Multiple sequence alignment - TraesCS1A01G344700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G344700 chr1A 100.000 3098 0 0 1 3098 532510944 532507847 0.000000e+00 5722
1 TraesCS1A01G344700 chr1D 84.016 757 85 17 2361 3098 434382483 434381744 0.000000e+00 695
2 TraesCS1A01G344700 chr1D 87.184 632 50 17 1 627 434734817 434735422 0.000000e+00 689
3 TraesCS1A01G344700 chr1D 78.995 995 104 60 539 1479 434514209 434515152 1.600000e-162 582
4 TraesCS1A01G344700 chr1D 86.252 531 71 2 1541 2070 434515186 434515715 2.680000e-160 575
5 TraesCS1A01G344700 chr1D 86.374 433 40 14 781 1207 434735808 434736227 3.640000e-124 455
6 TraesCS1A01G344700 chr1D 85.437 206 27 3 1542 1745 434736507 434736711 8.700000e-51 211
7 TraesCS1A01G344700 chr1B 83.361 595 88 6 1487 2079 588227242 588226657 9.770000e-150 540
8 TraesCS1A01G344700 chr1B 81.757 592 70 24 818 1400 588227898 588227336 7.830000e-126 460
9 TraesCS1A01G344700 chr1B 78.182 605 104 22 2509 3098 588763481 588764072 8.170000e-96 361
10 TraesCS1A01G344700 chr1B 74.910 554 112 21 1545 2080 665853122 665852578 8.640000e-56 228
11 TraesCS1A01G344700 chr1B 74.910 554 112 21 1545 2080 666003910 666004454 8.640000e-56 228
12 TraesCS1A01G344700 chr1B 72.626 537 134 9 1541 2072 622938285 622937757 6.870000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G344700 chr1A 532507847 532510944 3097 True 5722.000000 5722 100.000000 1 3098 1 chr1A.!!$R1 3097
1 TraesCS1A01G344700 chr1D 434381744 434382483 739 True 695.000000 695 84.016000 2361 3098 1 chr1D.!!$R1 737
2 TraesCS1A01G344700 chr1D 434514209 434515715 1506 False 578.500000 582 82.623500 539 2070 2 chr1D.!!$F1 1531
3 TraesCS1A01G344700 chr1D 434734817 434736711 1894 False 451.666667 689 86.331667 1 1745 3 chr1D.!!$F2 1744
4 TraesCS1A01G344700 chr1B 588226657 588227898 1241 True 500.000000 540 82.559000 818 2079 2 chr1B.!!$R3 1261
5 TraesCS1A01G344700 chr1B 588763481 588764072 591 False 361.000000 361 78.182000 2509 3098 1 chr1B.!!$F1 589
6 TraesCS1A01G344700 chr1B 665852578 665853122 544 True 228.000000 228 74.910000 1545 2080 1 chr1B.!!$R2 535
7 TraesCS1A01G344700 chr1B 666003910 666004454 544 False 228.000000 228 74.910000 1545 2080 1 chr1B.!!$F2 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 305 0.036858 GAGCCAAGGACCACACTCTC 60.037 60.0 0.00 0.00 0.00 3.20 F
1090 1385 0.037790 GATCTACGCATCTCTGCCCC 60.038 60.0 0.00 0.00 46.07 5.80 F
1105 1400 0.105039 GCCCCAACTGATCGAGTAGG 59.895 60.0 0.00 3.85 33.09 3.18 F
1694 2063 0.396001 TACATCACCCCGACGATGGA 60.396 55.0 9.93 0.00 42.72 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 2150 0.027586 GGCGCGCACGAGATATTTTT 59.972 50.0 34.42 0.00 43.93 1.94 R
1909 2292 0.033504 ACAACAGCGATGACTTCCGT 59.966 50.0 8.12 0.00 0.00 4.69 R
2049 2432 0.038744 ACCTGATGGCAAGAACCAGG 59.961 55.0 16.32 16.32 44.71 4.45 R
2607 3007 0.179134 GATGTAGAACTCGCGCACCT 60.179 55.0 8.75 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.989787 CCACAAACTTGGCCGGCC 61.990 66.667 39.40 39.40 0.00 6.13
58 59 2.289882 CCTCTTCAACCTGACATCTGCA 60.290 50.000 0.00 0.00 0.00 4.41
59 60 3.405831 CTCTTCAACCTGACATCTGCAA 58.594 45.455 0.00 0.00 0.00 4.08
81 82 3.584848 AGTAGAGCCTGAAATTGACCACT 59.415 43.478 0.00 0.00 0.00 4.00
94 95 1.067846 TGACCACTGGAGATTTCGACG 60.068 52.381 0.71 0.00 0.00 5.12
143 145 7.735917 ACGAAGAAGGATGAATGGATAATACA 58.264 34.615 0.00 0.00 0.00 2.29
144 146 8.378565 ACGAAGAAGGATGAATGGATAATACAT 58.621 33.333 0.00 0.00 0.00 2.29
145 147 8.663025 CGAAGAAGGATGAATGGATAATACATG 58.337 37.037 0.00 0.00 0.00 3.21
146 148 9.730705 GAAGAAGGATGAATGGATAATACATGA 57.269 33.333 0.00 0.00 0.00 3.07
148 150 9.736414 AGAAGGATGAATGGATAATACATGAAG 57.264 33.333 0.00 0.00 0.00 3.02
149 151 9.730705 GAAGGATGAATGGATAATACATGAAGA 57.269 33.333 0.00 0.00 0.00 2.87
167 169 9.252962 ACATGAAGATTTTGATTTTGTTCTCAC 57.747 29.630 0.00 0.00 0.00 3.51
168 170 8.706035 CATGAAGATTTTGATTTTGTTCTCACC 58.294 33.333 0.00 0.00 0.00 4.02
169 171 7.209475 TGAAGATTTTGATTTTGTTCTCACCC 58.791 34.615 0.00 0.00 0.00 4.61
170 172 6.729690 AGATTTTGATTTTGTTCTCACCCA 57.270 33.333 0.00 0.00 0.00 4.51
180 182 1.346068 GTTCTCACCCAGACTGCTCTT 59.654 52.381 0.00 0.00 0.00 2.85
201 203 1.705873 ATAGCGGGAAAGGAGTCGAT 58.294 50.000 0.00 0.00 0.00 3.59
233 235 1.032014 CTTTGGTGGTGGTGGACTTG 58.968 55.000 0.00 0.00 0.00 3.16
243 245 3.011014 TGGACTTGCCCCACAACA 58.989 55.556 0.00 0.00 33.68 3.33
247 249 0.668535 GACTTGCCCCACAACAGAAC 59.331 55.000 0.00 0.00 33.68 3.01
300 304 0.472734 AGAGCCAAGGACCACACTCT 60.473 55.000 0.00 0.00 0.00 3.24
301 305 0.036858 GAGCCAAGGACCACACTCTC 60.037 60.000 0.00 0.00 0.00 3.20
314 318 2.035704 CACACTCTCAACTCTGCTCAGT 59.964 50.000 0.00 0.00 0.00 3.41
315 319 2.697751 ACACTCTCAACTCTGCTCAGTT 59.302 45.455 0.00 0.00 37.05 3.16
346 350 4.333926 CCACCTTTGCTATCTTTCAGCTAC 59.666 45.833 0.00 0.00 39.83 3.58
355 359 6.183360 TGCTATCTTTCAGCTACGTGATTTTG 60.183 38.462 0.00 0.00 39.83 2.44
358 362 4.451096 TCTTTCAGCTACGTGATTTTGGTC 59.549 41.667 0.00 0.00 0.00 4.02
360 364 1.393539 CAGCTACGTGATTTTGGTCCG 59.606 52.381 0.00 0.00 0.00 4.79
366 370 0.879090 GTGATTTTGGTCCGGTGTCC 59.121 55.000 0.00 3.61 0.00 4.02
372 376 0.547075 TTGGTCCGGTGTCCTTCAAA 59.453 50.000 0.00 0.00 0.00 2.69
373 377 0.179040 TGGTCCGGTGTCCTTCAAAC 60.179 55.000 0.00 0.00 0.00 2.93
375 379 1.476291 GGTCCGGTGTCCTTCAAACTT 60.476 52.381 0.00 0.00 0.00 2.66
410 414 3.469899 TTCCATCAAATCAAACTCGCG 57.530 42.857 0.00 0.00 0.00 5.87
428 433 1.664016 GCGTGCATCTGGTGAGTTTTG 60.664 52.381 0.00 0.00 0.00 2.44
471 477 9.937577 GTACAATACAAAAATTCGAAAATCTGC 57.062 29.630 0.00 0.00 0.00 4.26
479 485 5.757850 AATTCGAAAATCTGCCTGATACC 57.242 39.130 0.00 0.00 34.45 2.73
501 507 7.161773 ACCGAAATGAAAATCATCAAGACAT 57.838 32.000 0.00 0.00 35.76 3.06
502 508 7.253422 ACCGAAATGAAAATCATCAAGACATC 58.747 34.615 0.00 0.00 35.76 3.06
528 534 8.770828 CGATTAGAGACACCTTCTTTTTGTTAA 58.229 33.333 0.00 0.00 33.22 2.01
550 556 1.826385 AAATTCTGAGCCCAAGTCCG 58.174 50.000 0.00 0.00 0.00 4.79
554 560 2.525629 TGAGCCCAAGTCCGGACA 60.526 61.111 35.00 10.31 0.00 4.02
561 567 1.216710 CAAGTCCGGACAGCTCTCC 59.783 63.158 35.00 6.86 0.00 3.71
645 655 3.645687 AGATAGAGGATCAAAGAGGTGCC 59.354 47.826 0.00 0.00 37.82 5.01
647 657 2.203584 AGAGGATCAAAGAGGTGCCAT 58.796 47.619 0.00 0.00 37.82 4.40
706 964 2.584261 CTATCCACACGCTGCTGCCT 62.584 60.000 10.24 0.00 35.36 4.75
707 965 2.184020 TATCCACACGCTGCTGCCTT 62.184 55.000 10.24 0.00 35.36 4.35
708 966 4.034258 CCACACGCTGCTGCCTTG 62.034 66.667 10.24 9.82 35.36 3.61
751 1014 4.969196 CTGCACGTGACGGCACCT 62.969 66.667 22.23 0.00 42.09 4.00
778 1041 2.588877 CGCGAAGGGCCATACCAG 60.589 66.667 6.18 0.00 42.05 4.00
838 1125 2.105766 ACTAGTTCCCGCCGTTAATCT 58.894 47.619 0.00 0.00 0.00 2.40
867 1154 3.148412 TGCAAGCTGTACAATGTCACAT 58.852 40.909 0.00 0.00 0.00 3.21
890 1178 8.892723 ACATAATCGAATGTCAAAAGCTATGAA 58.107 29.630 3.86 0.00 35.08 2.57
909 1197 6.931790 ATGAAGCATAGGATAGTCACAGAT 57.068 37.500 0.00 0.00 0.00 2.90
915 1203 6.950619 AGCATAGGATAGTCACAGATATCACA 59.049 38.462 5.32 0.00 31.29 3.58
1044 1337 1.153881 GAGGCGGTTGACGGACTAC 60.154 63.158 0.00 0.00 44.51 2.73
1076 1371 0.686789 CCCATCGCCCATGTGATCTA 59.313 55.000 0.00 0.00 39.68 1.98
1078 1373 1.422388 CATCGCCCATGTGATCTACG 58.578 55.000 0.00 0.00 39.68 3.51
1088 1383 1.067669 TGTGATCTACGCATCTCTGCC 59.932 52.381 0.00 0.00 46.07 4.85
1089 1384 0.676184 TGATCTACGCATCTCTGCCC 59.324 55.000 0.00 0.00 46.07 5.36
1090 1385 0.037790 GATCTACGCATCTCTGCCCC 60.038 60.000 0.00 0.00 46.07 5.80
1091 1386 0.760567 ATCTACGCATCTCTGCCCCA 60.761 55.000 0.00 0.00 46.07 4.96
1092 1387 0.975556 TCTACGCATCTCTGCCCCAA 60.976 55.000 0.00 0.00 46.07 4.12
1094 1389 1.264749 TACGCATCTCTGCCCCAACT 61.265 55.000 0.00 0.00 46.07 3.16
1095 1390 2.110967 CGCATCTCTGCCCCAACTG 61.111 63.158 0.00 0.00 46.07 3.16
1097 1392 0.106819 GCATCTCTGCCCCAACTGAT 60.107 55.000 0.00 0.00 42.88 2.90
1098 1393 1.964552 CATCTCTGCCCCAACTGATC 58.035 55.000 0.00 0.00 0.00 2.92
1099 1394 0.467384 ATCTCTGCCCCAACTGATCG 59.533 55.000 0.00 0.00 0.00 3.69
1104 1399 0.824109 TGCCCCAACTGATCGAGTAG 59.176 55.000 0.00 0.00 33.09 2.57
1105 1400 0.105039 GCCCCAACTGATCGAGTAGG 59.895 60.000 0.00 3.85 33.09 3.18
1106 1401 0.105039 CCCCAACTGATCGAGTAGGC 59.895 60.000 0.00 0.00 33.09 3.93
1107 1402 1.115467 CCCAACTGATCGAGTAGGCT 58.885 55.000 0.00 0.00 33.09 4.58
1108 1403 1.482593 CCCAACTGATCGAGTAGGCTT 59.517 52.381 0.00 0.00 33.09 4.35
1109 1404 2.544685 CCAACTGATCGAGTAGGCTTG 58.455 52.381 0.00 0.00 33.09 4.01
1110 1405 1.929836 CAACTGATCGAGTAGGCTTGC 59.070 52.381 0.00 0.00 33.09 4.01
1111 1406 0.461961 ACTGATCGAGTAGGCTTGCC 59.538 55.000 2.97 2.97 30.86 4.52
1117 1412 1.086634 CGAGTAGGCTTGCCAGCTTC 61.087 60.000 14.54 5.15 46.44 3.86
1121 1416 1.544825 TAGGCTTGCCAGCTTCGAGT 61.545 55.000 14.54 0.00 46.44 4.18
1129 1424 3.782046 TGCCAGCTTCGAGTACTATTTC 58.218 45.455 0.00 0.00 0.00 2.17
1130 1425 3.447586 TGCCAGCTTCGAGTACTATTTCT 59.552 43.478 0.00 0.00 0.00 2.52
1146 1441 9.423061 GTACTATTTCTAAAGGAACCGTGTAAA 57.577 33.333 0.00 0.00 33.13 2.01
1149 1444 7.812690 ATTTCTAAAGGAACCGTGTAAACTT 57.187 32.000 0.00 0.00 33.13 2.66
1152 1453 7.894376 TCTAAAGGAACCGTGTAAACTTATG 57.106 36.000 0.00 0.00 0.00 1.90
1159 1460 6.072893 GGAACCGTGTAAACTTATGTGAACAT 60.073 38.462 0.95 0.95 40.22 2.71
1160 1461 7.118101 GGAACCGTGTAAACTTATGTGAACATA 59.882 37.037 0.00 0.00 37.76 2.29
1171 1472 4.659111 ATGTGAACATATTGGCATGTGG 57.341 40.909 0.00 0.00 39.10 4.17
1189 1490 2.033299 GTGGACATGTGGTGTTTCACTG 59.967 50.000 1.15 0.00 42.36 3.66
1200 1501 7.402054 TGTGGTGTTTCACTGATTAATCCTAT 58.598 34.615 12.90 0.00 38.40 2.57
1201 1502 8.544622 TGTGGTGTTTCACTGATTAATCCTATA 58.455 33.333 12.90 0.00 38.40 1.31
1202 1503 9.561069 GTGGTGTTTCACTGATTAATCCTATAT 57.439 33.333 12.90 0.00 34.40 0.86
1224 1525 8.978564 ATATATGAGTTGCAAGATCGAGTTAG 57.021 34.615 0.00 0.00 0.00 2.34
1228 1529 5.105756 TGAGTTGCAAGATCGAGTTAGATGA 60.106 40.000 0.00 0.00 0.00 2.92
1232 1533 5.767269 TGCAAGATCGAGTTAGATGATCTC 58.233 41.667 0.00 0.00 46.03 2.75
1240 1552 4.615949 GAGTTAGATGATCTCGTGCATGT 58.384 43.478 5.68 0.00 0.00 3.21
1247 1559 1.409064 GATCTCGTGCATGTCTACCCA 59.591 52.381 5.68 0.00 0.00 4.51
1248 1560 0.817654 TCTCGTGCATGTCTACCCAG 59.182 55.000 5.68 0.00 0.00 4.45
1249 1561 0.532573 CTCGTGCATGTCTACCCAGT 59.467 55.000 5.68 0.00 0.00 4.00
1250 1562 1.749063 CTCGTGCATGTCTACCCAGTA 59.251 52.381 5.68 0.00 0.00 2.74
1253 1565 1.203994 GTGCATGTCTACCCAGTACGT 59.796 52.381 0.00 0.00 0.00 3.57
1257 1569 3.733077 GCATGTCTACCCAGTACGTGTAC 60.733 52.174 0.00 1.90 33.59 2.90
1283 1595 8.489559 CGTAAGTTCTAGTACTAGATAGTGCTG 58.510 40.741 28.79 14.82 46.44 4.41
1284 1596 9.328845 GTAAGTTCTAGTACTAGATAGTGCTGT 57.671 37.037 28.79 13.30 46.44 4.40
1285 1597 8.441312 AAGTTCTAGTACTAGATAGTGCTGTC 57.559 38.462 28.79 12.95 46.44 3.51
1288 1600 6.215121 TCTAGTACTAGATAGTGCTGTCGTC 58.785 44.000 25.58 0.00 46.44 4.20
1329 1641 0.935898 GTGAGCTTGCGATGGATCAG 59.064 55.000 0.00 0.00 0.00 2.90
1332 1644 1.895707 GCTTGCGATGGATCAGGGG 60.896 63.158 0.00 0.00 0.00 4.79
1339 1651 2.701163 GATGGATCAGGGGTCGTCGC 62.701 65.000 0.00 0.00 0.00 5.19
1381 1694 1.580845 CCGGTGGCTCTTGCTTCTTG 61.581 60.000 0.00 0.00 39.59 3.02
1384 1697 0.514691 GTGGCTCTTGCTTCTTGTCG 59.485 55.000 0.00 0.00 39.59 4.35
1387 1700 0.793250 GCTCTTGCTTCTTGTCGGTC 59.207 55.000 0.00 0.00 36.03 4.79
1470 1785 2.423892 CACTCACTAGAGCGAGGCTTAA 59.576 50.000 0.00 0.00 46.09 1.85
1485 1800 1.477700 GCTTAAGGCCATGCATGTCAA 59.522 47.619 24.58 9.96 34.27 3.18
1495 1863 2.925578 TGCATGTCAATAGCAACTGC 57.074 45.000 0.00 0.00 42.49 4.40
1513 1881 5.481200 ACTGCTTCATCAAATCAATCTCG 57.519 39.130 0.00 0.00 0.00 4.04
1516 1884 3.549625 GCTTCATCAAATCAATCTCGGCC 60.550 47.826 0.00 0.00 0.00 6.13
1521 1889 1.098050 AAATCAATCTCGGCCACTGC 58.902 50.000 2.24 0.00 0.00 4.40
1525 1893 1.486310 TCAATCTCGGCCACTGCTTAT 59.514 47.619 2.24 0.00 37.74 1.73
1527 1895 1.959042 ATCTCGGCCACTGCTTATTG 58.041 50.000 2.24 0.00 37.74 1.90
1528 1896 0.744414 TCTCGGCCACTGCTTATTGC 60.744 55.000 2.24 0.00 43.25 3.56
1529 1897 0.745845 CTCGGCCACTGCTTATTGCT 60.746 55.000 2.24 0.00 43.37 3.91
1530 1898 1.026182 TCGGCCACTGCTTATTGCTG 61.026 55.000 2.24 0.00 44.70 4.41
1531 1899 1.811860 GGCCACTGCTTATTGCTGG 59.188 57.895 0.00 0.00 43.66 4.85
1533 1901 1.430632 CCACTGCTTATTGCTGGCG 59.569 57.895 0.00 0.00 43.66 5.69
1534 1902 1.430632 CACTGCTTATTGCTGGCGG 59.569 57.895 0.00 0.00 43.66 6.13
1539 1907 1.802636 CTTATTGCTGGCGGGTGTG 59.197 57.895 0.00 0.00 0.00 3.82
1552 1920 0.802494 GGGTGTGTATGCAGGTTTCG 59.198 55.000 0.00 0.00 0.00 3.46
1619 1988 0.942410 GACACGACAAAGCTGCGGTA 60.942 55.000 0.00 0.00 0.00 4.02
1665 2034 1.613437 GCAGGCACTAACCACAACATT 59.387 47.619 0.00 0.00 36.02 2.71
1668 2037 2.890945 AGGCACTAACCACAACATTTCC 59.109 45.455 0.00 0.00 36.02 3.13
1694 2063 0.396001 TACATCACCCCGACGATGGA 60.396 55.000 9.93 0.00 42.72 3.41
1697 2066 1.392710 ATCACCCCGACGATGGACTC 61.393 60.000 9.93 0.00 0.00 3.36
1731 2106 3.387947 CGTAGCTTCCCCACCGGT 61.388 66.667 0.00 0.00 0.00 5.28
1733 2108 2.203877 TAGCTTCCCCACCGGTGT 60.204 61.111 31.80 14.92 0.00 4.16
1755 2130 1.372997 CAACTGCTACACGCTCCGT 60.373 57.895 0.00 0.00 42.36 4.69
1776 2151 4.680237 CTCGTGTCGGCAGGGCAA 62.680 66.667 10.16 0.00 0.00 4.52
1779 2154 2.840066 CGTGTCGGCAGGGCAAAAA 61.840 57.895 0.81 0.00 0.00 1.94
1788 2163 2.223572 GGCAGGGCAAAAATATCTCGTG 60.224 50.000 0.00 0.00 0.00 4.35
1809 2184 1.308047 GCGCCATGTTCATGTATGGA 58.692 50.000 22.01 0.00 45.32 3.41
1826 2201 1.000060 TGGAAACTACGACGGTCTTGG 60.000 52.381 6.57 1.28 0.00 3.61
1828 2203 0.665369 AAACTACGACGGTCTTGGCG 60.665 55.000 6.57 0.00 0.00 5.69
1876 2251 2.827921 GGGGTTAACTACTGGAAGACGA 59.172 50.000 5.42 0.00 37.43 4.20
1884 2259 5.407407 ACTACTGGAAGACGATGAACATT 57.593 39.130 0.00 0.00 37.43 2.71
1891 2266 4.093556 GGAAGACGATGAACATTTCAGACC 59.906 45.833 0.00 0.00 43.98 3.85
1894 2269 3.338249 ACGATGAACATTTCAGACCCAG 58.662 45.455 0.00 0.00 43.98 4.45
1897 2272 0.804989 GAACATTTCAGACCCAGGCG 59.195 55.000 0.00 0.00 0.00 5.52
1900 2275 2.954684 ATTTCAGACCCAGGCGCGA 61.955 57.895 12.10 0.00 0.00 5.87
1909 2292 2.278792 CAGGCGCGACGATGATGA 60.279 61.111 12.10 0.00 0.00 2.92
1910 2293 2.278857 AGGCGCGACGATGATGAC 60.279 61.111 12.10 0.00 0.00 3.06
2016 2399 1.275421 GCCTAAGGCCCCTCAAGAGT 61.275 60.000 0.00 0.00 44.06 3.24
2060 2444 3.376918 GCAGGGCCTGGTTCTTGC 61.377 66.667 33.43 15.66 31.21 4.01
2072 2456 1.457346 GTTCTTGCCATCAGGTCCAG 58.543 55.000 0.00 0.00 37.19 3.86
2080 2464 1.377725 ATCAGGTCCAGCTTTGGCG 60.378 57.895 0.00 0.00 44.37 5.69
2081 2465 2.826777 ATCAGGTCCAGCTTTGGCGG 62.827 60.000 0.00 0.00 44.37 6.13
2084 2468 3.294493 GTCCAGCTTTGGCGGCAA 61.294 61.111 21.79 21.79 44.37 4.52
2085 2469 2.985282 TCCAGCTTTGGCGGCAAG 60.985 61.111 24.20 18.36 44.37 4.01
2086 2470 4.060038 CCAGCTTTGGCGGCAAGG 62.060 66.667 26.57 26.57 44.37 3.61
2087 2471 4.060038 CAGCTTTGGCGGCAAGGG 62.060 66.667 30.28 23.63 44.37 3.95
2088 2472 4.603535 AGCTTTGGCGGCAAGGGT 62.604 61.111 28.58 28.58 44.37 4.34
2089 2473 4.362476 GCTTTGGCGGCAAGGGTG 62.362 66.667 30.28 19.49 0.00 4.61
2090 2474 2.912025 CTTTGGCGGCAAGGGTGT 60.912 61.111 23.84 0.00 0.00 4.16
2091 2475 2.909965 TTTGGCGGCAAGGGTGTC 60.910 61.111 24.20 0.00 0.00 3.67
2092 2476 3.723097 TTTGGCGGCAAGGGTGTCA 62.723 57.895 24.20 5.14 0.00 3.58
2093 2477 4.641645 TGGCGGCAAGGGTGTCAG 62.642 66.667 10.22 0.00 0.00 3.51
2095 2479 4.643387 GCGGCAAGGGTGTCAGGT 62.643 66.667 0.00 0.00 0.00 4.00
2096 2480 3.065306 CGGCAAGGGTGTCAGGTA 58.935 61.111 0.00 0.00 0.00 3.08
2097 2481 1.373435 CGGCAAGGGTGTCAGGTAA 59.627 57.895 0.00 0.00 0.00 2.85
2098 2482 0.035439 CGGCAAGGGTGTCAGGTAAT 60.035 55.000 0.00 0.00 0.00 1.89
2099 2483 1.613255 CGGCAAGGGTGTCAGGTAATT 60.613 52.381 0.00 0.00 0.00 1.40
2100 2484 2.355310 CGGCAAGGGTGTCAGGTAATTA 60.355 50.000 0.00 0.00 0.00 1.40
2101 2485 3.692690 GGCAAGGGTGTCAGGTAATTAA 58.307 45.455 0.00 0.00 0.00 1.40
2102 2486 3.694566 GGCAAGGGTGTCAGGTAATTAAG 59.305 47.826 0.00 0.00 0.00 1.85
2103 2487 3.128764 GCAAGGGTGTCAGGTAATTAAGC 59.871 47.826 0.00 0.00 0.00 3.09
2104 2488 4.331968 CAAGGGTGTCAGGTAATTAAGCA 58.668 43.478 0.00 0.00 0.00 3.91
2105 2489 3.951663 AGGGTGTCAGGTAATTAAGCAC 58.048 45.455 0.00 0.00 0.00 4.40
2106 2490 2.676342 GGGTGTCAGGTAATTAAGCACG 59.324 50.000 0.00 0.00 0.00 5.34
2107 2491 3.332034 GGTGTCAGGTAATTAAGCACGT 58.668 45.455 0.00 0.00 0.00 4.49
2108 2492 3.124636 GGTGTCAGGTAATTAAGCACGTG 59.875 47.826 12.28 12.28 33.06 4.49
2109 2493 2.739913 TGTCAGGTAATTAAGCACGTGC 59.260 45.455 32.79 32.79 42.49 5.34
2127 2511 8.204182 GCACGTGCTTACATTGAAATAATATC 57.796 34.615 32.55 0.00 38.21 1.63
2128 2512 7.855409 GCACGTGCTTACATTGAAATAATATCA 59.145 33.333 32.55 0.00 38.21 2.15
2129 2513 9.715123 CACGTGCTTACATTGAAATAATATCAA 57.285 29.630 0.82 0.00 40.76 2.57
2148 2532 8.895932 ATATCAATTTGTTTTCAAGCGTACTC 57.104 30.769 0.00 0.00 41.09 2.59
2149 2533 6.125327 TCAATTTGTTTTCAAGCGTACTCA 57.875 33.333 0.00 0.00 41.09 3.41
2150 2534 5.968848 TCAATTTGTTTTCAAGCGTACTCAC 59.031 36.000 0.00 0.00 41.09 3.51
2151 2535 3.579147 TTGTTTTCAAGCGTACTCACG 57.421 42.857 0.00 0.00 41.94 4.35
2152 2536 2.931325 TTGTTTTCAAGCGTACTCACGT 59.069 40.909 0.00 0.00 41.49 4.49
2153 2537 4.111198 TTGTTTTCAAGCGTACTCACGTA 58.889 39.130 0.00 0.00 41.49 3.57
2154 2538 4.746115 TTGTTTTCAAGCGTACTCACGTAT 59.254 37.500 0.00 0.00 41.49 3.06
2155 2539 5.332732 TTGTTTTCAAGCGTACTCACGTATG 60.333 40.000 0.00 0.00 41.49 2.39
2156 2540 8.194011 TTGTTTTCAAGCGTACTCACGTATGG 62.194 42.308 0.00 0.00 41.49 2.74
2159 2543 4.297071 CGTACTCACGTATGGCCG 57.703 61.111 0.00 0.00 43.31 6.13
2160 2544 1.298863 CGTACTCACGTATGGCCGG 60.299 63.158 0.00 0.00 43.31 6.13
2161 2545 1.717791 CGTACTCACGTATGGCCGGA 61.718 60.000 5.05 0.00 43.31 5.14
2162 2546 0.672342 GTACTCACGTATGGCCGGAT 59.328 55.000 5.05 0.00 0.00 4.18
2163 2547 1.068127 GTACTCACGTATGGCCGGATT 59.932 52.381 5.05 0.00 0.00 3.01
2164 2548 0.104304 ACTCACGTATGGCCGGATTC 59.896 55.000 5.05 0.00 0.00 2.52
2165 2549 0.600255 CTCACGTATGGCCGGATTCC 60.600 60.000 5.05 0.00 0.00 3.01
2166 2550 1.145156 CACGTATGGCCGGATTCCA 59.855 57.895 5.05 2.87 38.09 3.53
2167 2551 1.145377 ACGTATGGCCGGATTCCAC 59.855 57.895 5.05 0.00 36.26 4.02
2168 2552 1.335132 ACGTATGGCCGGATTCCACT 61.335 55.000 5.05 0.00 36.26 4.00
2169 2553 0.677288 CGTATGGCCGGATTCCACTA 59.323 55.000 5.05 0.00 36.26 2.74
2170 2554 1.275291 CGTATGGCCGGATTCCACTAT 59.725 52.381 5.05 0.49 36.26 2.12
2171 2555 2.674177 CGTATGGCCGGATTCCACTATC 60.674 54.545 5.05 0.00 36.26 2.08
2172 2556 1.434188 ATGGCCGGATTCCACTATCA 58.566 50.000 5.05 0.00 36.26 2.15
2173 2557 1.434188 TGGCCGGATTCCACTATCAT 58.566 50.000 5.05 0.00 0.00 2.45
2174 2558 1.774254 TGGCCGGATTCCACTATCATT 59.226 47.619 5.05 0.00 0.00 2.57
2175 2559 2.976185 TGGCCGGATTCCACTATCATTA 59.024 45.455 5.05 0.00 0.00 1.90
2176 2560 3.244422 TGGCCGGATTCCACTATCATTAC 60.244 47.826 5.05 0.00 0.00 1.89
2177 2561 3.244422 GGCCGGATTCCACTATCATTACA 60.244 47.826 5.05 0.00 0.00 2.41
2178 2562 4.385825 GCCGGATTCCACTATCATTACAA 58.614 43.478 5.05 0.00 0.00 2.41
2179 2563 4.819630 GCCGGATTCCACTATCATTACAAA 59.180 41.667 5.05 0.00 0.00 2.83
2180 2564 5.298276 GCCGGATTCCACTATCATTACAAAA 59.702 40.000 5.05 0.00 0.00 2.44
2181 2565 6.725246 CCGGATTCCACTATCATTACAAAAC 58.275 40.000 0.00 0.00 0.00 2.43
2182 2566 6.317642 CCGGATTCCACTATCATTACAAAACA 59.682 38.462 0.00 0.00 0.00 2.83
2183 2567 7.186804 CGGATTCCACTATCATTACAAAACAC 58.813 38.462 3.09 0.00 0.00 3.32
2184 2568 7.148323 CGGATTCCACTATCATTACAAAACACA 60.148 37.037 3.09 0.00 0.00 3.72
2185 2569 8.184192 GGATTCCACTATCATTACAAAACACAG 58.816 37.037 0.00 0.00 0.00 3.66
2186 2570 7.447374 TTCCACTATCATTACAAAACACAGG 57.553 36.000 0.00 0.00 0.00 4.00
2187 2571 6.539173 TCCACTATCATTACAAAACACAGGT 58.461 36.000 0.00 0.00 0.00 4.00
2188 2572 7.001674 TCCACTATCATTACAAAACACAGGTT 58.998 34.615 0.00 0.00 39.43 3.50
2189 2573 7.174253 TCCACTATCATTACAAAACACAGGTTC 59.826 37.037 0.00 0.00 35.82 3.62
2190 2574 7.040755 CCACTATCATTACAAAACACAGGTTCA 60.041 37.037 0.00 0.00 35.82 3.18
2191 2575 8.349245 CACTATCATTACAAAACACAGGTTCAA 58.651 33.333 0.00 0.00 35.82 2.69
2192 2576 8.908903 ACTATCATTACAAAACACAGGTTCAAA 58.091 29.630 0.00 0.00 35.82 2.69
2193 2577 9.743057 CTATCATTACAAAACACAGGTTCAAAA 57.257 29.630 0.00 0.00 35.82 2.44
2195 2579 8.641499 TCATTACAAAACACAGGTTCAAAATC 57.359 30.769 0.00 0.00 35.82 2.17
2196 2580 8.253810 TCATTACAAAACACAGGTTCAAAATCA 58.746 29.630 0.00 0.00 35.82 2.57
2197 2581 9.044150 CATTACAAAACACAGGTTCAAAATCAT 57.956 29.630 0.00 0.00 35.82 2.45
2198 2582 9.612066 ATTACAAAACACAGGTTCAAAATCATT 57.388 25.926 0.00 0.00 35.82 2.57
2199 2583 7.538303 ACAAAACACAGGTTCAAAATCATTC 57.462 32.000 0.00 0.00 35.82 2.67
2200 2584 6.538381 ACAAAACACAGGTTCAAAATCATTCC 59.462 34.615 0.00 0.00 35.82 3.01
2201 2585 4.503741 ACACAGGTTCAAAATCATTCCG 57.496 40.909 0.00 0.00 0.00 4.30
2202 2586 4.141287 ACACAGGTTCAAAATCATTCCGA 58.859 39.130 0.00 0.00 0.00 4.55
2203 2587 4.766891 ACACAGGTTCAAAATCATTCCGAT 59.233 37.500 0.00 0.00 35.12 4.18
2204 2588 5.097529 CACAGGTTCAAAATCATTCCGATG 58.902 41.667 0.00 0.00 33.40 3.84
2205 2589 4.158394 ACAGGTTCAAAATCATTCCGATGG 59.842 41.667 0.00 0.00 33.40 3.51
2206 2590 4.398988 CAGGTTCAAAATCATTCCGATGGA 59.601 41.667 0.00 0.00 33.40 3.41
2207 2591 5.016173 AGGTTCAAAATCATTCCGATGGAA 58.984 37.500 0.00 0.00 46.39 3.53
2208 2592 5.480073 AGGTTCAAAATCATTCCGATGGAAA 59.520 36.000 1.86 0.00 45.41 3.13
2209 2593 5.576774 GGTTCAAAATCATTCCGATGGAAAC 59.423 40.000 1.86 0.00 45.41 2.78
2210 2594 5.973899 TCAAAATCATTCCGATGGAAACA 57.026 34.783 1.86 0.00 45.41 2.83
2226 2610 6.687081 TGGAAACATAAACGAAACTGAGTT 57.313 33.333 0.00 0.00 33.40 3.01
2227 2611 7.789273 TGGAAACATAAACGAAACTGAGTTA 57.211 32.000 0.00 0.00 33.40 2.24
2228 2612 8.385898 TGGAAACATAAACGAAACTGAGTTAT 57.614 30.769 0.00 0.00 33.40 1.89
2229 2613 9.491675 TGGAAACATAAACGAAACTGAGTTATA 57.508 29.630 0.00 0.00 33.40 0.98
2230 2614 9.750882 GGAAACATAAACGAAACTGAGTTATAC 57.249 33.333 0.00 0.00 0.00 1.47
2234 2618 9.298774 ACATAAACGAAACTGAGTTATACTAGC 57.701 33.333 0.00 0.00 0.00 3.42
2235 2619 9.517609 CATAAACGAAACTGAGTTATACTAGCT 57.482 33.333 0.00 0.00 0.00 3.32
2238 2622 7.862512 ACGAAACTGAGTTATACTAGCTAGT 57.137 36.000 28.50 28.50 40.24 2.57
2239 2623 7.918643 ACGAAACTGAGTTATACTAGCTAGTC 58.081 38.462 29.28 15.21 37.73 2.59
2240 2624 7.551974 ACGAAACTGAGTTATACTAGCTAGTCA 59.448 37.037 29.28 18.13 37.73 3.41
2241 2625 8.561212 CGAAACTGAGTTATACTAGCTAGTCAT 58.439 37.037 29.28 20.86 37.73 3.06
2242 2626 9.887406 GAAACTGAGTTATACTAGCTAGTCATC 57.113 37.037 29.28 19.30 37.73 2.92
2243 2627 7.989416 ACTGAGTTATACTAGCTAGTCATCC 57.011 40.000 29.28 15.77 37.73 3.51
2244 2628 7.751646 ACTGAGTTATACTAGCTAGTCATCCT 58.248 38.462 29.28 19.79 37.73 3.24
2245 2629 7.663905 ACTGAGTTATACTAGCTAGTCATCCTG 59.336 40.741 29.28 18.32 37.73 3.86
2246 2630 7.746703 TGAGTTATACTAGCTAGTCATCCTGA 58.253 38.462 29.28 11.10 37.73 3.86
2247 2631 8.387039 TGAGTTATACTAGCTAGTCATCCTGAT 58.613 37.037 29.28 17.24 37.73 2.90
2248 2632 8.574251 AGTTATACTAGCTAGTCATCCTGATG 57.426 38.462 29.28 0.55 37.73 3.07
2249 2633 7.613801 AGTTATACTAGCTAGTCATCCTGATGG 59.386 40.741 29.28 0.00 39.24 3.51
2250 2634 3.505386 ACTAGCTAGTCATCCTGATGGG 58.495 50.000 20.95 0.00 39.24 4.00
2251 2635 1.727062 AGCTAGTCATCCTGATGGGG 58.273 55.000 7.26 0.00 39.24 4.96
2252 2636 1.221523 AGCTAGTCATCCTGATGGGGA 59.778 52.381 7.26 0.00 39.24 4.81
2253 2637 2.158035 AGCTAGTCATCCTGATGGGGAT 60.158 50.000 7.26 0.00 46.02 3.85
2254 2638 3.078153 AGCTAGTCATCCTGATGGGGATA 59.922 47.826 7.26 0.00 43.55 2.59
2255 2639 3.840666 GCTAGTCATCCTGATGGGGATAA 59.159 47.826 7.26 0.00 43.55 1.75
2256 2640 4.287067 GCTAGTCATCCTGATGGGGATAAA 59.713 45.833 7.26 0.00 43.55 1.40
2257 2641 5.045286 GCTAGTCATCCTGATGGGGATAAAT 60.045 44.000 7.26 0.00 43.55 1.40
2258 2642 5.511386 AGTCATCCTGATGGGGATAAATC 57.489 43.478 7.26 0.00 43.55 2.17
2259 2643 4.915809 AGTCATCCTGATGGGGATAAATCA 59.084 41.667 7.26 0.00 43.55 2.57
2260 2644 5.554747 AGTCATCCTGATGGGGATAAATCAT 59.445 40.000 7.26 0.00 43.55 2.45
2261 2645 6.046405 AGTCATCCTGATGGGGATAAATCATT 59.954 38.462 7.26 0.00 43.55 2.57
2262 2646 6.152323 GTCATCCTGATGGGGATAAATCATTG 59.848 42.308 7.26 0.00 43.55 2.82
2263 2647 4.410099 TCCTGATGGGGATAAATCATTGC 58.590 43.478 0.00 0.00 32.56 3.56
2264 2648 4.140971 TCCTGATGGGGATAAATCATTGCA 60.141 41.667 0.00 0.00 32.56 4.08
2265 2649 4.589798 CCTGATGGGGATAAATCATTGCAA 59.410 41.667 0.00 0.00 32.56 4.08
2266 2650 5.070714 CCTGATGGGGATAAATCATTGCAAA 59.929 40.000 1.71 0.00 32.56 3.68
2267 2651 6.408320 CCTGATGGGGATAAATCATTGCAAAA 60.408 38.462 1.71 0.00 32.56 2.44
2268 2652 6.955364 TGATGGGGATAAATCATTGCAAAAA 58.045 32.000 1.71 0.00 0.00 1.94
2304 2688 8.998277 ATACTAGCTAGAAGTAGAAATGGTGA 57.002 34.615 27.45 0.00 33.15 4.02
2305 2689 7.102847 ACTAGCTAGAAGTAGAAATGGTGAC 57.897 40.000 27.45 0.00 0.00 3.67
2323 2707 7.581213 TGGTGACAGATGACTTGTAAATTTT 57.419 32.000 0.00 0.00 35.01 1.82
2324 2708 7.424803 TGGTGACAGATGACTTGTAAATTTTG 58.575 34.615 0.00 0.00 35.01 2.44
2325 2709 7.068103 TGGTGACAGATGACTTGTAAATTTTGT 59.932 33.333 0.00 0.00 35.01 2.83
2326 2710 8.564574 GGTGACAGATGACTTGTAAATTTTGTA 58.435 33.333 0.00 0.00 0.00 2.41
2327 2711 9.599322 GTGACAGATGACTTGTAAATTTTGTAG 57.401 33.333 0.00 0.00 0.00 2.74
2328 2712 9.337396 TGACAGATGACTTGTAAATTTTGTAGT 57.663 29.630 0.00 0.00 0.00 2.73
2343 2727 7.832503 ATTTTGTAGTAAAATTCAGGCATGC 57.167 32.000 9.90 9.90 0.00 4.06
2344 2728 5.973899 TTGTAGTAAAATTCAGGCATGCA 57.026 34.783 21.36 0.00 0.00 3.96
2345 2729 6.528537 TTGTAGTAAAATTCAGGCATGCAT 57.471 33.333 21.36 10.32 0.00 3.96
2346 2730 6.528537 TGTAGTAAAATTCAGGCATGCATT 57.471 33.333 21.36 7.62 0.00 3.56
2347 2731 6.563422 TGTAGTAAAATTCAGGCATGCATTC 58.437 36.000 21.36 1.57 0.00 2.67
2348 2732 5.927281 AGTAAAATTCAGGCATGCATTCT 57.073 34.783 21.36 4.35 0.00 2.40
2349 2733 5.899299 AGTAAAATTCAGGCATGCATTCTC 58.101 37.500 21.36 0.72 0.00 2.87
2350 2734 3.814005 AAATTCAGGCATGCATTCTCC 57.186 42.857 21.36 0.00 0.00 3.71
2351 2735 2.750141 ATTCAGGCATGCATTCTCCT 57.250 45.000 21.36 2.68 0.00 3.69
2352 2736 2.519771 TTCAGGCATGCATTCTCCTT 57.480 45.000 21.36 0.00 0.00 3.36
2353 2737 1.758936 TCAGGCATGCATTCTCCTTG 58.241 50.000 21.36 0.00 0.00 3.61
2354 2738 0.102481 CAGGCATGCATTCTCCTTGC 59.898 55.000 21.36 0.00 40.55 4.01
2360 2744 1.825090 TGCATTCTCCTTGCATTCGT 58.175 45.000 0.00 0.00 44.73 3.85
2361 2745 2.161855 TGCATTCTCCTTGCATTCGTT 58.838 42.857 0.00 0.00 44.73 3.85
2362 2746 2.095110 TGCATTCTCCTTGCATTCGTTG 60.095 45.455 0.00 0.00 44.73 4.10
2363 2747 2.162208 GCATTCTCCTTGCATTCGTTGA 59.838 45.455 0.00 0.00 39.90 3.18
2364 2748 3.181493 GCATTCTCCTTGCATTCGTTGAT 60.181 43.478 0.00 0.00 39.90 2.57
2365 2749 4.035558 GCATTCTCCTTGCATTCGTTGATA 59.964 41.667 0.00 0.00 39.90 2.15
2369 2753 3.270027 TCCTTGCATTCGTTGATACAGG 58.730 45.455 0.00 0.00 0.00 4.00
2375 2759 3.680475 GCATTCGTTGATACAGGTACCCA 60.680 47.826 8.74 0.00 0.00 4.51
2378 2762 3.638860 TCGTTGATACAGGTACCCAGAT 58.361 45.455 8.74 0.00 0.00 2.90
2393 2777 1.000163 CCAGATGATCCTTACGACCGG 60.000 57.143 0.00 0.00 0.00 5.28
2394 2778 1.681793 CAGATGATCCTTACGACCGGT 59.318 52.381 6.92 6.92 0.00 5.28
2395 2779 2.100916 CAGATGATCCTTACGACCGGTT 59.899 50.000 9.42 0.00 0.00 4.44
2401 2785 0.531311 CCTTACGACCGGTTATGGCC 60.531 60.000 9.42 0.00 0.00 5.36
2407 2791 4.557385 CCGGTTATGGCCCCCGTC 62.557 72.222 16.09 0.00 40.10 4.79
2409 2793 3.472726 GGTTATGGCCCCCGTCGA 61.473 66.667 0.00 0.00 0.00 4.20
2410 2794 2.108362 GTTATGGCCCCCGTCGAG 59.892 66.667 0.00 0.00 0.00 4.04
2420 2804 3.129502 CCGTCGAGCGACCCTACA 61.130 66.667 16.35 0.00 44.77 2.74
2421 2805 2.403987 CGTCGAGCGACCCTACAG 59.596 66.667 16.35 0.00 44.77 2.74
2437 2821 3.882888 CCTACAGAGTGGTCAGAGATCTC 59.117 52.174 15.29 15.29 0.00 2.75
2438 2822 3.448093 ACAGAGTGGTCAGAGATCTCA 57.552 47.619 24.39 1.76 0.00 3.27
2441 2825 3.509184 CAGAGTGGTCAGAGATCTCAACA 59.491 47.826 24.39 10.96 0.00 3.33
2447 2831 3.999663 GGTCAGAGATCTCAACAACCAAG 59.000 47.826 24.39 3.29 0.00 3.61
2459 2843 6.826231 TCTCAACAACCAAGAGTGTGATAAAA 59.174 34.615 0.00 0.00 0.00 1.52
2462 2846 6.619801 ACAACCAAGAGTGTGATAAAAGTC 57.380 37.500 0.00 0.00 0.00 3.01
2465 2849 5.794894 ACCAAGAGTGTGATAAAAGTCGAT 58.205 37.500 0.00 0.00 0.00 3.59
2466 2850 5.639506 ACCAAGAGTGTGATAAAAGTCGATG 59.360 40.000 0.00 0.00 0.00 3.84
2486 2870 1.023513 GCTTCGAAGTGCCATCTGCT 61.024 55.000 25.24 0.00 42.00 4.24
2528 2928 1.689233 CCCATCCGGTTCTCCTGGA 60.689 63.158 0.00 0.00 39.38 3.86
2560 2960 0.179056 ACGCTTACAATCCCATCCCG 60.179 55.000 0.00 0.00 0.00 5.14
2576 2976 4.326826 CATCCCGAGGTATATTTGCATGT 58.673 43.478 0.00 0.00 0.00 3.21
2578 2978 4.133820 TCCCGAGGTATATTTGCATGTTG 58.866 43.478 0.00 0.00 0.00 3.33
2593 2993 2.526304 TGTTGTACTTCGCAGAGCTT 57.474 45.000 0.00 0.00 38.43 3.74
2594 2994 2.135139 TGTTGTACTTCGCAGAGCTTG 58.865 47.619 0.00 0.00 38.43 4.01
2635 3035 4.122776 GCGAGTTCTACATCACCATGAAT 58.877 43.478 0.00 0.00 33.72 2.57
2655 3055 1.268283 GGCAAGCTCCTGTACCCTCT 61.268 60.000 0.00 0.00 0.00 3.69
2668 3068 2.710902 CCCTCTCGTCATGTCGCCA 61.711 63.158 7.51 0.00 0.00 5.69
2682 3082 1.514873 CGCCACGGTACCTCGTAAC 60.515 63.158 10.90 0.00 41.86 2.50
2698 3098 1.664151 GTAACCGCTGCCATCTACAAC 59.336 52.381 0.00 0.00 0.00 3.32
2707 3107 1.127951 GCCATCTACAACGACAAACCG 59.872 52.381 0.00 0.00 0.00 4.44
2709 3109 3.577667 CCATCTACAACGACAAACCGTA 58.422 45.455 0.00 0.00 42.54 4.02
2724 3124 0.322098 CCGTACCATGGCTTTGACCA 60.322 55.000 13.04 0.00 45.82 4.02
2729 3129 1.423541 ACCATGGCTTTGACCAGTACA 59.576 47.619 13.04 0.00 44.71 2.90
2754 3154 3.204827 GCTGAATGCCACCGCGAT 61.205 61.111 8.23 0.00 38.08 4.58
2758 3158 1.521457 GAATGCCACCGCGATCTCA 60.521 57.895 8.23 0.00 38.08 3.27
2776 3176 1.086696 CAACGCTTCCACCGATCATT 58.913 50.000 0.00 0.00 0.00 2.57
2796 3196 1.803366 AACGCCGTCGAGGTCTTCTT 61.803 55.000 4.18 0.00 43.70 2.52
2816 3216 4.000620 TCCTCCCTACCACCGGCA 62.001 66.667 0.00 0.00 0.00 5.69
2817 3217 3.782443 CCTCCCTACCACCGGCAC 61.782 72.222 0.00 0.00 0.00 5.01
2877 3285 8.558973 TTTTCAGAAAACAAAATTGGTCATGT 57.441 26.923 4.06 0.00 0.00 3.21
2879 3287 8.641499 TTCAGAAAACAAAATTGGTCATGTAC 57.359 30.769 0.00 0.00 0.00 2.90
2880 3288 7.776107 TCAGAAAACAAAATTGGTCATGTACA 58.224 30.769 0.00 0.00 0.00 2.90
2881 3289 7.920151 TCAGAAAACAAAATTGGTCATGTACAG 59.080 33.333 0.33 0.00 0.00 2.74
2882 3290 6.701400 AGAAAACAAAATTGGTCATGTACAGC 59.299 34.615 0.33 0.00 0.00 4.40
2883 3291 5.789643 AACAAAATTGGTCATGTACAGCT 57.210 34.783 0.33 0.00 0.00 4.24
2885 3293 6.500684 ACAAAATTGGTCATGTACAGCTAG 57.499 37.500 0.33 0.00 0.00 3.42
2886 3294 5.415701 ACAAAATTGGTCATGTACAGCTAGG 59.584 40.000 0.33 0.00 0.00 3.02
2887 3295 5.435686 AAATTGGTCATGTACAGCTAGGA 57.564 39.130 0.33 0.00 0.00 2.94
2890 3298 2.292257 TGGTCATGTACAGCTAGGACCT 60.292 50.000 22.73 0.00 43.94 3.85
2891 3299 3.053170 TGGTCATGTACAGCTAGGACCTA 60.053 47.826 22.73 0.13 43.94 3.08
2892 3300 3.570550 GGTCATGTACAGCTAGGACCTAG 59.429 52.174 22.44 22.44 41.17 3.02
2893 3301 4.208746 GTCATGTACAGCTAGGACCTAGT 58.791 47.826 26.10 12.66 36.53 2.57
2896 3304 5.826737 TCATGTACAGCTAGGACCTAGTAAC 59.173 44.000 26.10 18.84 36.53 2.50
2897 3305 5.447778 TGTACAGCTAGGACCTAGTAACT 57.552 43.478 26.10 14.24 36.53 2.24
2899 3307 6.590068 TGTACAGCTAGGACCTAGTAACTAG 58.410 44.000 26.10 13.74 36.53 2.57
2900 3308 5.713760 ACAGCTAGGACCTAGTAACTAGT 57.286 43.478 26.10 14.26 36.53 2.57
2901 3309 6.821616 ACAGCTAGGACCTAGTAACTAGTA 57.178 41.667 26.10 0.00 36.53 1.82
2902 3310 6.829849 ACAGCTAGGACCTAGTAACTAGTAG 58.170 44.000 26.10 8.61 36.53 2.57
2978 3390 2.036346 AGAAATGCAACAGTTTCTGCCC 59.964 45.455 11.31 0.00 41.67 5.36
2980 3392 1.708341 ATGCAACAGTTTCTGCCCTT 58.292 45.000 0.00 0.00 37.79 3.95
3051 3463 3.490761 CCTTGTGTGCCGAGAAAATTTGT 60.491 43.478 0.00 0.00 0.00 2.83
3070 3482 2.108075 TGTGTGGGATGGATTGAGTTGT 59.892 45.455 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.618507 GCTCTACTTGCAGATGTCAGGTT 60.619 47.826 0.00 0.00 0.00 3.50
58 59 4.042187 AGTGGTCAATTTCAGGCTCTACTT 59.958 41.667 0.00 0.00 0.00 2.24
59 60 3.584848 AGTGGTCAATTTCAGGCTCTACT 59.415 43.478 0.00 0.00 0.00 2.57
81 82 1.063616 CGAGCTACGTCGAAATCTCCA 59.936 52.381 0.00 0.00 42.85 3.86
94 95 1.144057 CCCCACCATCACGAGCTAC 59.856 63.158 0.00 0.00 0.00 3.58
102 103 0.474614 TCGTTGTTTCCCCACCATCA 59.525 50.000 0.00 0.00 0.00 3.07
143 145 7.874528 GGGTGAGAACAAAATCAAAATCTTCAT 59.125 33.333 0.00 0.00 0.00 2.57
144 146 7.147759 TGGGTGAGAACAAAATCAAAATCTTCA 60.148 33.333 0.00 0.00 0.00 3.02
145 147 7.209475 TGGGTGAGAACAAAATCAAAATCTTC 58.791 34.615 0.00 0.00 0.00 2.87
146 148 7.069826 TCTGGGTGAGAACAAAATCAAAATCTT 59.930 33.333 0.00 0.00 0.00 2.40
147 149 6.550854 TCTGGGTGAGAACAAAATCAAAATCT 59.449 34.615 0.00 0.00 0.00 2.40
148 150 6.642540 GTCTGGGTGAGAACAAAATCAAAATC 59.357 38.462 0.00 0.00 30.26 2.17
149 151 6.324770 AGTCTGGGTGAGAACAAAATCAAAAT 59.675 34.615 0.00 0.00 30.26 1.82
151 153 5.067674 CAGTCTGGGTGAGAACAAAATCAAA 59.932 40.000 0.00 0.00 30.26 2.69
152 154 4.580167 CAGTCTGGGTGAGAACAAAATCAA 59.420 41.667 0.00 0.00 30.26 2.57
153 155 4.136796 CAGTCTGGGTGAGAACAAAATCA 58.863 43.478 0.00 0.00 30.26 2.57
154 156 3.057946 GCAGTCTGGGTGAGAACAAAATC 60.058 47.826 1.14 0.00 30.26 2.17
155 157 2.887152 GCAGTCTGGGTGAGAACAAAAT 59.113 45.455 1.14 0.00 30.26 1.82
157 159 1.490490 AGCAGTCTGGGTGAGAACAAA 59.510 47.619 1.14 0.00 30.26 2.83
158 160 1.070758 GAGCAGTCTGGGTGAGAACAA 59.929 52.381 1.14 0.00 30.26 2.83
159 161 0.681733 GAGCAGTCTGGGTGAGAACA 59.318 55.000 1.14 0.00 30.26 3.18
160 162 0.972883 AGAGCAGTCTGGGTGAGAAC 59.027 55.000 1.14 0.00 30.26 3.01
161 163 1.722034 AAGAGCAGTCTGGGTGAGAA 58.278 50.000 1.14 0.00 31.37 2.87
162 164 2.604912 TAAGAGCAGTCTGGGTGAGA 57.395 50.000 1.14 0.00 31.37 3.27
163 165 3.902881 ATTAAGAGCAGTCTGGGTGAG 57.097 47.619 1.14 0.00 31.37 3.51
164 166 3.133003 GCTATTAAGAGCAGTCTGGGTGA 59.867 47.826 17.01 0.00 42.36 4.02
165 167 3.462021 GCTATTAAGAGCAGTCTGGGTG 58.538 50.000 17.01 0.00 42.36 4.61
166 168 2.101582 CGCTATTAAGAGCAGTCTGGGT 59.898 50.000 21.15 0.00 42.99 4.51
167 169 2.546795 CCGCTATTAAGAGCAGTCTGGG 60.547 54.545 21.15 9.57 42.99 4.45
168 170 2.546795 CCCGCTATTAAGAGCAGTCTGG 60.547 54.545 21.15 13.20 42.99 3.86
169 171 2.362397 TCCCGCTATTAAGAGCAGTCTG 59.638 50.000 21.15 5.08 42.99 3.51
170 172 2.667470 TCCCGCTATTAAGAGCAGTCT 58.333 47.619 21.15 0.00 42.99 3.24
180 182 2.658285 TCGACTCCTTTCCCGCTATTA 58.342 47.619 0.00 0.00 0.00 0.98
201 203 2.435805 CCACCAAAGCTAGCCAGATAGA 59.564 50.000 12.13 0.00 0.00 1.98
233 235 0.539438 TCATGGTTCTGTTGTGGGGC 60.539 55.000 0.00 0.00 0.00 5.80
266 268 5.221303 CCTTGGCTCTTGAGAACAAAATCAA 60.221 40.000 1.30 0.00 35.49 2.57
271 273 3.214328 GTCCTTGGCTCTTGAGAACAAA 58.786 45.455 1.30 0.00 35.49 2.83
346 350 0.515564 GACACCGGACCAAAATCACG 59.484 55.000 9.46 0.00 0.00 4.35
355 359 0.108019 AGTTTGAAGGACACCGGACC 59.892 55.000 9.46 8.86 0.00 4.46
358 362 3.793797 AAAAAGTTTGAAGGACACCGG 57.206 42.857 0.00 0.00 0.00 5.28
387 391 5.296780 ACGCGAGTTTGATTTGATGGAATAT 59.703 36.000 15.93 0.00 46.40 1.28
388 392 4.634004 ACGCGAGTTTGATTTGATGGAATA 59.366 37.500 15.93 0.00 46.40 1.75
389 393 3.440173 ACGCGAGTTTGATTTGATGGAAT 59.560 39.130 15.93 0.00 46.40 3.01
391 395 2.159430 CACGCGAGTTTGATTTGATGGA 59.841 45.455 15.93 0.00 46.40 3.41
392 396 2.508867 CACGCGAGTTTGATTTGATGG 58.491 47.619 15.93 0.00 46.40 3.51
393 397 1.906966 GCACGCGAGTTTGATTTGATG 59.093 47.619 15.93 0.00 46.40 3.07
394 398 1.535028 TGCACGCGAGTTTGATTTGAT 59.465 42.857 15.93 0.00 46.40 2.57
395 399 0.940833 TGCACGCGAGTTTGATTTGA 59.059 45.000 15.93 0.00 46.40 2.69
396 400 1.906966 GATGCACGCGAGTTTGATTTG 59.093 47.619 15.93 0.00 46.40 2.32
397 401 1.806542 AGATGCACGCGAGTTTGATTT 59.193 42.857 15.93 0.00 46.40 2.17
398 402 1.129251 CAGATGCACGCGAGTTTGATT 59.871 47.619 15.93 0.00 46.40 2.57
399 403 0.723414 CAGATGCACGCGAGTTTGAT 59.277 50.000 15.93 0.00 46.40 2.57
400 404 1.291184 CCAGATGCACGCGAGTTTGA 61.291 55.000 15.93 0.00 46.40 2.69
401 405 1.133253 CCAGATGCACGCGAGTTTG 59.867 57.895 15.93 0.22 46.40 2.93
402 406 1.301716 ACCAGATGCACGCGAGTTT 60.302 52.632 15.93 0.00 46.40 2.66
405 409 2.125952 TCACCAGATGCACGCGAG 60.126 61.111 15.93 5.97 0.00 5.03
410 414 2.358898 ACACAAAACTCACCAGATGCAC 59.641 45.455 0.00 0.00 0.00 4.57
428 433 3.724374 TGTACAAGCCAGTAAGTGACAC 58.276 45.455 0.00 0.00 0.00 3.67
471 477 7.263100 TGATGATTTTCATTTCGGTATCAGG 57.737 36.000 0.00 0.00 37.20 3.86
479 485 7.182089 TCGATGTCTTGATGATTTTCATTTCG 58.818 34.615 0.00 0.00 37.20 3.46
501 507 6.522054 ACAAAAAGAAGGTGTCTCTAATCGA 58.478 36.000 0.00 0.00 34.56 3.59
502 508 6.787085 ACAAAAAGAAGGTGTCTCTAATCG 57.213 37.500 0.00 0.00 34.56 3.34
529 535 2.558359 CGGACTTGGGCTCAGAATTTTT 59.442 45.455 0.00 0.00 0.00 1.94
541 547 2.232298 GAGAGCTGTCCGGACTTGGG 62.232 65.000 33.39 20.89 0.00 4.12
550 556 0.250513 ATCCAAACGGAGAGCTGTCC 59.749 55.000 19.95 19.95 35.52 4.02
554 560 1.139853 GATGGATCCAAACGGAGAGCT 59.860 52.381 20.67 0.00 35.52 4.09
594 604 1.261480 TCTCCAGGTCTCAAGAGCAC 58.739 55.000 11.45 0.52 44.42 4.40
645 655 2.456119 GCGACGAGAAGGTGGCATG 61.456 63.158 0.00 0.00 40.77 4.06
647 657 3.282745 GAGCGACGAGAAGGTGGCA 62.283 63.158 0.00 0.00 43.13 4.92
656 666 2.776913 GGAGGGGAAGAGCGACGAG 61.777 68.421 0.00 0.00 0.00 4.18
688 867 2.125147 GGCAGCAGCGTGTGGATA 60.125 61.111 0.00 0.00 43.41 2.59
690 869 4.254709 AAGGCAGCAGCGTGTGGA 62.255 61.111 0.00 0.00 43.41 4.02
735 993 4.539083 AAGGTGCCGTCACGTGCA 62.539 61.111 11.67 9.00 44.03 4.57
736 994 2.830285 AAAAGGTGCCGTCACGTGC 61.830 57.895 11.67 5.23 44.03 5.34
737 995 1.010125 CAAAAGGTGCCGTCACGTG 60.010 57.895 9.94 9.94 44.03 4.49
738 996 3.416490 CAAAAGGTGCCGTCACGT 58.584 55.556 0.00 0.00 44.03 4.49
757 1020 2.280797 TATGGCCCTTCGCGCATC 60.281 61.111 8.75 0.00 38.94 3.91
766 1029 0.844661 TGTTGGTCTGGTATGGCCCT 60.845 55.000 0.00 0.00 36.04 5.19
773 1036 1.073629 TGGGGGTGTTGGTCTGGTA 60.074 57.895 0.00 0.00 0.00 3.25
774 1037 2.369015 TGGGGGTGTTGGTCTGGT 60.369 61.111 0.00 0.00 0.00 4.00
778 1041 1.004200 CGTAGTGGGGGTGTTGGTC 60.004 63.158 0.00 0.00 0.00 4.02
802 1089 7.121463 CGGGAACTAGTAATACTCTCTATGCAT 59.879 40.741 3.79 3.79 0.00 3.96
803 1090 6.430308 CGGGAACTAGTAATACTCTCTATGCA 59.570 42.308 0.00 0.00 0.00 3.96
804 1091 6.623331 GCGGGAACTAGTAATACTCTCTATGC 60.623 46.154 0.00 0.00 0.00 3.14
805 1092 6.127952 GGCGGGAACTAGTAATACTCTCTATG 60.128 46.154 0.00 0.00 0.00 2.23
806 1093 5.945191 GGCGGGAACTAGTAATACTCTCTAT 59.055 44.000 0.00 0.00 0.00 1.98
807 1094 5.312079 GGCGGGAACTAGTAATACTCTCTA 58.688 45.833 0.00 0.00 0.00 2.43
808 1095 4.143543 GGCGGGAACTAGTAATACTCTCT 58.856 47.826 0.00 0.00 0.00 3.10
809 1096 3.058363 CGGCGGGAACTAGTAATACTCTC 60.058 52.174 0.00 0.00 0.00 3.20
867 1154 7.409697 GCTTCATAGCTTTTGACATTCGATTA 58.590 34.615 0.00 0.00 44.27 1.75
890 1178 6.950619 TGTGATATCTGTGACTATCCTATGCT 59.049 38.462 3.98 0.00 0.00 3.79
909 1197 2.571202 TGGACAGTTCATGCCTGTGATA 59.429 45.455 18.82 5.92 43.00 2.15
915 1203 0.615331 ACGATGGACAGTTCATGCCT 59.385 50.000 0.00 0.00 0.00 4.75
1038 1331 2.084546 GGTTGACTTGCATGGTAGTCC 58.915 52.381 12.56 0.23 40.00 3.85
1044 1337 0.452987 CGATGGGTTGACTTGCATGG 59.547 55.000 4.44 0.00 0.00 3.66
1076 1371 2.045926 GTTGGGGCAGAGATGCGT 60.046 61.111 0.00 0.00 35.24 5.24
1078 1373 0.106819 ATCAGTTGGGGCAGAGATGC 60.107 55.000 0.00 0.00 0.00 3.91
1088 1383 1.115467 AGCCTACTCGATCAGTTGGG 58.885 55.000 19.24 14.51 45.52 4.12
1090 1385 1.929836 GCAAGCCTACTCGATCAGTTG 59.070 52.381 3.63 2.60 36.43 3.16
1091 1386 1.134670 GGCAAGCCTACTCGATCAGTT 60.135 52.381 3.29 0.00 36.43 3.16
1092 1387 0.461961 GGCAAGCCTACTCGATCAGT 59.538 55.000 3.29 0.00 39.41 3.41
1094 1389 0.461548 CTGGCAAGCCTACTCGATCA 59.538 55.000 12.96 0.00 36.94 2.92
1095 1390 0.878086 GCTGGCAAGCCTACTCGATC 60.878 60.000 12.96 0.00 44.22 3.69
1097 1392 2.579201 GCTGGCAAGCCTACTCGA 59.421 61.111 12.96 0.00 44.22 4.04
1106 1401 2.941453 TAGTACTCGAAGCTGGCAAG 57.059 50.000 0.00 0.00 0.00 4.01
1107 1402 3.887621 AATAGTACTCGAAGCTGGCAA 57.112 42.857 0.00 0.00 0.00 4.52
1108 1403 3.447586 AGAAATAGTACTCGAAGCTGGCA 59.552 43.478 0.00 0.00 0.00 4.92
1109 1404 4.048241 AGAAATAGTACTCGAAGCTGGC 57.952 45.455 0.00 0.00 0.00 4.85
1110 1405 6.697892 CCTTTAGAAATAGTACTCGAAGCTGG 59.302 42.308 0.00 0.00 0.00 4.85
1111 1406 7.481642 TCCTTTAGAAATAGTACTCGAAGCTG 58.518 38.462 0.00 0.00 0.00 4.24
1117 1412 6.471519 CACGGTTCCTTTAGAAATAGTACTCG 59.528 42.308 0.00 0.00 35.85 4.18
1121 1416 9.423061 GTTTACACGGTTCCTTTAGAAATAGTA 57.577 33.333 0.00 0.00 35.85 1.82
1129 1424 7.385752 TCACATAAGTTTACACGGTTCCTTTAG 59.614 37.037 0.00 0.00 0.00 1.85
1130 1425 7.215789 TCACATAAGTTTACACGGTTCCTTTA 58.784 34.615 0.00 0.00 0.00 1.85
1146 1441 6.183360 CCACATGCCAATATGTTCACATAAGT 60.183 38.462 3.78 0.00 41.60 2.24
1149 1444 5.299028 GTCCACATGCCAATATGTTCACATA 59.701 40.000 2.13 2.13 39.17 2.29
1152 1453 3.443329 TGTCCACATGCCAATATGTTCAC 59.557 43.478 0.00 0.00 39.17 3.18
1171 1472 4.836125 AATCAGTGAAACACCACATGTC 57.164 40.909 0.00 0.00 42.31 3.06
1200 1501 8.166422 TCTAACTCGATCTTGCAACTCATATA 57.834 34.615 0.00 0.00 0.00 0.86
1201 1502 7.043961 TCTAACTCGATCTTGCAACTCATAT 57.956 36.000 0.00 0.00 0.00 1.78
1202 1503 6.451064 TCTAACTCGATCTTGCAACTCATA 57.549 37.500 0.00 0.00 0.00 2.15
1203 1504 5.330455 TCTAACTCGATCTTGCAACTCAT 57.670 39.130 0.00 0.00 0.00 2.90
1204 1505 4.783764 TCTAACTCGATCTTGCAACTCA 57.216 40.909 0.00 0.00 0.00 3.41
1205 1506 5.344066 TCATCTAACTCGATCTTGCAACTC 58.656 41.667 0.00 0.00 0.00 3.01
1206 1507 5.330455 TCATCTAACTCGATCTTGCAACT 57.670 39.130 0.00 0.00 0.00 3.16
1207 1508 5.982516 AGATCATCTAACTCGATCTTGCAAC 59.017 40.000 0.00 0.00 42.48 4.17
1208 1509 6.154203 AGATCATCTAACTCGATCTTGCAA 57.846 37.500 0.00 0.00 42.48 4.08
1209 1510 5.767269 GAGATCATCTAACTCGATCTTGCA 58.233 41.667 0.00 0.00 44.53 4.08
1223 1524 3.005261 GGTAGACATGCACGAGATCATCT 59.995 47.826 0.00 0.00 0.00 2.90
1224 1525 3.312828 GGTAGACATGCACGAGATCATC 58.687 50.000 0.00 0.00 0.00 2.92
1228 1529 1.410517 CTGGGTAGACATGCACGAGAT 59.589 52.381 0.00 0.00 0.00 2.75
1232 1533 1.797713 CGTACTGGGTAGACATGCACG 60.798 57.143 0.00 0.00 0.00 5.34
1248 1560 8.525071 CTAGTACTAGAACTTACGTACACGTAC 58.475 40.741 23.20 0.00 43.28 3.67
1249 1561 8.456471 TCTAGTACTAGAACTTACGTACACGTA 58.544 37.037 26.83 10.39 43.71 3.57
1250 1562 7.313646 TCTAGTACTAGAACTTACGTACACGT 58.686 38.462 26.83 12.54 45.53 4.49
1257 1569 8.489559 CAGCACTATCTAGTACTAGAACTTACG 58.510 40.741 31.11 19.51 44.44 3.18
1260 1572 7.225145 CGACAGCACTATCTAGTACTAGAACTT 59.775 40.741 31.11 19.76 44.44 2.66
1268 1580 5.085636 CTGACGACAGCACTATCTAGTAC 57.914 47.826 1.13 0.00 37.33 2.73
1281 1593 3.117171 GCCAGCAGCTGACGACAG 61.117 66.667 24.90 10.66 45.91 3.51
1282 1594 4.687215 GGCCAGCAGCTGACGACA 62.687 66.667 24.90 0.00 43.05 4.35
1308 1620 2.098842 GATCCATCGCAAGCTCACGC 62.099 60.000 3.59 0.00 37.18 5.34
1311 1623 0.179065 CCTGATCCATCGCAAGCTCA 60.179 55.000 0.00 0.00 37.18 4.26
1313 1625 1.147824 CCCTGATCCATCGCAAGCT 59.852 57.895 0.00 0.00 37.18 3.74
1316 1628 1.526887 GACCCCTGATCCATCGCAA 59.473 57.895 0.00 0.00 0.00 4.85
1319 1631 1.364171 GACGACCCCTGATCCATCG 59.636 63.158 0.00 0.00 38.71 3.84
1339 1651 2.117156 CCATTGCTCTTGCTCCCGG 61.117 63.158 0.00 0.00 40.48 5.73
1342 1654 2.768492 CCGCCATTGCTCTTGCTCC 61.768 63.158 0.00 0.00 40.48 4.70
1395 1708 1.835483 CGTGAAGAACGCTGCTGCTT 61.835 55.000 14.03 0.68 46.99 3.91
1413 1726 1.592669 GTCGATCTGGCCATGGACG 60.593 63.158 18.40 9.74 0.00 4.79
1470 1785 1.325355 GCTATTGACATGCATGGCCT 58.675 50.000 29.51 18.78 33.92 5.19
1495 1863 3.628942 TGGCCGAGATTGATTTGATGAAG 59.371 43.478 0.00 0.00 0.00 3.02
1521 1889 0.960364 ACACACCCGCCAGCAATAAG 60.960 55.000 0.00 0.00 0.00 1.73
1525 1893 1.673993 CATACACACCCGCCAGCAA 60.674 57.895 0.00 0.00 0.00 3.91
1527 1895 3.508840 GCATACACACCCGCCAGC 61.509 66.667 0.00 0.00 0.00 4.85
1528 1896 2.046411 TGCATACACACCCGCCAG 60.046 61.111 0.00 0.00 0.00 4.85
1529 1897 2.046411 CTGCATACACACCCGCCA 60.046 61.111 0.00 0.00 0.00 5.69
1530 1898 2.824041 CCTGCATACACACCCGCC 60.824 66.667 0.00 0.00 0.00 6.13
1531 1899 1.241315 AAACCTGCATACACACCCGC 61.241 55.000 0.00 0.00 0.00 6.13
1532 1900 0.802494 GAAACCTGCATACACACCCG 59.198 55.000 0.00 0.00 0.00 5.28
1533 1901 0.802494 CGAAACCTGCATACACACCC 59.198 55.000 0.00 0.00 0.00 4.61
1534 1902 1.519408 ACGAAACCTGCATACACACC 58.481 50.000 0.00 0.00 0.00 4.16
1539 1907 5.047847 TCTATGCTTACGAAACCTGCATAC 58.952 41.667 0.00 0.00 43.09 2.39
1552 1920 2.555199 CAGGCCACAGTCTATGCTTAC 58.445 52.381 5.01 0.00 0.00 2.34
1600 1968 0.942410 TACCGCAGCTTTGTCGTGTC 60.942 55.000 0.00 0.00 0.00 3.67
1619 1988 1.615424 AAGCCAGTATCCCCGGTGT 60.615 57.895 0.00 0.00 0.00 4.16
1629 1998 0.108186 CTGCATCGGTGAAGCCAGTA 60.108 55.000 0.00 0.00 36.97 2.74
1630 1999 1.376424 CTGCATCGGTGAAGCCAGT 60.376 57.895 0.00 0.00 36.97 4.00
1665 2034 1.514087 GGTGATGTACTCGGCGGAA 59.486 57.895 7.21 0.00 0.00 4.30
1668 2037 2.106332 GGGGTGATGTACTCGGCG 59.894 66.667 0.00 0.00 0.00 6.46
1711 2080 2.349755 GGTGGGGAAGCTACGCAA 59.650 61.111 9.23 0.00 32.38 4.85
1731 2106 2.594048 CGTGTAGCAGTTGCGCACA 61.594 57.895 11.12 17.42 45.08 4.57
1755 2130 3.680786 CCTGCCGACACGAGTGGA 61.681 66.667 8.19 0.00 34.19 4.02
1775 2150 0.027586 GGCGCGCACGAGATATTTTT 59.972 50.000 34.42 0.00 43.93 1.94
1776 2151 1.087202 TGGCGCGCACGAGATATTTT 61.087 50.000 34.42 0.00 43.93 1.82
1779 2154 2.023771 CATGGCGCGCACGAGATAT 61.024 57.895 34.42 11.57 43.93 1.63
1788 2163 0.658244 CATACATGAACATGGCGCGC 60.658 55.000 25.94 25.94 42.91 6.86
1809 2184 0.665369 CGCCAAGACCGTCGTAGTTT 60.665 55.000 0.00 0.00 0.00 2.66
1828 2203 3.195698 GTCGAAGATGGGCGGCAC 61.196 66.667 12.47 0.00 40.67 5.01
1876 2251 2.450476 GCCTGGGTCTGAAATGTTCAT 58.550 47.619 0.00 0.00 39.30 2.57
1884 2259 4.373116 GTCGCGCCTGGGTCTGAA 62.373 66.667 0.00 0.00 0.00 3.02
1891 2266 3.333189 CATCATCGTCGCGCCTGG 61.333 66.667 0.00 0.00 0.00 4.45
1894 2269 3.682315 CGTCATCATCGTCGCGCC 61.682 66.667 0.00 0.00 0.00 6.53
1897 2272 0.525668 ACTTCCGTCATCATCGTCGC 60.526 55.000 0.00 0.00 0.00 5.19
1909 2292 0.033504 ACAACAGCGATGACTTCCGT 59.966 50.000 8.12 0.00 0.00 4.69
1910 2293 0.716108 GACAACAGCGATGACTTCCG 59.284 55.000 8.12 0.00 0.00 4.30
1971 2354 2.577059 GAGATGAACGGCGTCCCA 59.423 61.111 15.17 15.39 32.72 4.37
2016 2399 0.252057 TAGCCTGTGGGTAGAGTGCA 60.252 55.000 0.00 0.00 34.28 4.57
2028 2411 4.351938 TGCGTCGCGTTAGCCTGT 62.352 61.111 13.38 0.00 41.18 4.00
2049 2432 0.038744 ACCTGATGGCAAGAACCAGG 59.961 55.000 16.32 16.32 44.71 4.45
2060 2444 1.318158 GCCAAAGCTGGACCTGATGG 61.318 60.000 1.91 8.00 46.92 3.51
2063 2447 2.032528 CGCCAAAGCTGGACCTGA 59.967 61.111 1.91 0.00 46.92 3.86
2072 2456 4.362476 CACCCTTGCCGCCAAAGC 62.362 66.667 0.00 0.00 0.00 3.51
2080 2464 2.215942 AATTACCTGACACCCTTGCC 57.784 50.000 0.00 0.00 0.00 4.52
2081 2465 3.128764 GCTTAATTACCTGACACCCTTGC 59.871 47.826 0.00 0.00 0.00 4.01
2082 2466 4.156008 GTGCTTAATTACCTGACACCCTTG 59.844 45.833 0.00 0.00 0.00 3.61
2083 2467 4.332828 GTGCTTAATTACCTGACACCCTT 58.667 43.478 0.00 0.00 0.00 3.95
2084 2468 3.618997 CGTGCTTAATTACCTGACACCCT 60.619 47.826 0.00 0.00 0.00 4.34
2085 2469 2.676342 CGTGCTTAATTACCTGACACCC 59.324 50.000 0.00 0.00 0.00 4.61
2086 2470 3.124636 CACGTGCTTAATTACCTGACACC 59.875 47.826 0.82 0.00 0.00 4.16
2087 2471 3.424433 GCACGTGCTTAATTACCTGACAC 60.424 47.826 32.55 0.00 38.21 3.67
2088 2472 2.739913 GCACGTGCTTAATTACCTGACA 59.260 45.455 32.55 0.00 38.21 3.58
2089 2473 3.385079 GCACGTGCTTAATTACCTGAC 57.615 47.619 32.55 0.00 38.21 3.51
2102 2486 7.855409 TGATATTATTTCAATGTAAGCACGTGC 59.145 33.333 32.79 32.79 42.49 5.34
2103 2487 9.715123 TTGATATTATTTCAATGTAAGCACGTG 57.285 29.630 12.28 12.28 0.00 4.49
2122 2506 9.341899 GAGTACGCTTGAAAACAAATTGATATT 57.658 29.630 0.00 0.00 0.00 1.28
2123 2507 8.511321 TGAGTACGCTTGAAAACAAATTGATAT 58.489 29.630 0.00 0.00 0.00 1.63
2124 2508 7.801315 GTGAGTACGCTTGAAAACAAATTGATA 59.199 33.333 0.00 0.00 0.00 2.15
2125 2509 6.636850 GTGAGTACGCTTGAAAACAAATTGAT 59.363 34.615 0.00 0.00 0.00 2.57
2126 2510 5.968848 GTGAGTACGCTTGAAAACAAATTGA 59.031 36.000 0.00 0.00 0.00 2.57
2127 2511 5.108780 CGTGAGTACGCTTGAAAACAAATTG 60.109 40.000 0.00 0.00 44.11 2.32
2128 2512 4.967575 CGTGAGTACGCTTGAAAACAAATT 59.032 37.500 0.00 0.00 44.11 1.82
2129 2513 4.523813 CGTGAGTACGCTTGAAAACAAAT 58.476 39.130 0.00 0.00 44.11 2.32
2130 2514 3.930618 CGTGAGTACGCTTGAAAACAAA 58.069 40.909 0.00 0.00 44.11 2.83
2131 2515 3.579147 CGTGAGTACGCTTGAAAACAA 57.421 42.857 0.00 0.00 44.11 2.83
2146 2530 0.600255 GGAATCCGGCCATACGTGAG 60.600 60.000 2.24 0.00 0.00 3.51
2147 2531 1.331399 TGGAATCCGGCCATACGTGA 61.331 55.000 2.24 0.00 0.00 4.35
2148 2532 1.145156 TGGAATCCGGCCATACGTG 59.855 57.895 2.24 0.00 0.00 4.49
2149 2533 1.145377 GTGGAATCCGGCCATACGT 59.855 57.895 2.24 0.00 37.81 3.57
2150 2534 0.677288 TAGTGGAATCCGGCCATACG 59.323 55.000 2.24 0.00 37.81 3.06
2151 2535 2.301870 TGATAGTGGAATCCGGCCATAC 59.698 50.000 2.24 0.00 37.81 2.39
2152 2536 2.615391 TGATAGTGGAATCCGGCCATA 58.385 47.619 2.24 0.00 37.81 2.74
2153 2537 1.434188 TGATAGTGGAATCCGGCCAT 58.566 50.000 2.24 0.00 37.81 4.40
2154 2538 1.434188 ATGATAGTGGAATCCGGCCA 58.566 50.000 2.24 0.00 0.00 5.36
2155 2539 2.568623 AATGATAGTGGAATCCGGCC 57.431 50.000 0.00 0.00 0.00 6.13
2156 2540 4.002906 TGTAATGATAGTGGAATCCGGC 57.997 45.455 0.00 0.00 0.00 6.13
2157 2541 6.317642 TGTTTTGTAATGATAGTGGAATCCGG 59.682 38.462 0.00 0.00 0.00 5.14
2158 2542 7.148323 TGTGTTTTGTAATGATAGTGGAATCCG 60.148 37.037 0.00 0.00 0.00 4.18
2159 2543 8.050778 TGTGTTTTGTAATGATAGTGGAATCC 57.949 34.615 0.00 0.00 0.00 3.01
2160 2544 8.184192 CCTGTGTTTTGTAATGATAGTGGAATC 58.816 37.037 0.00 0.00 0.00 2.52
2161 2545 7.669722 ACCTGTGTTTTGTAATGATAGTGGAAT 59.330 33.333 0.00 0.00 0.00 3.01
2162 2546 7.001674 ACCTGTGTTTTGTAATGATAGTGGAA 58.998 34.615 0.00 0.00 0.00 3.53
2163 2547 6.539173 ACCTGTGTTTTGTAATGATAGTGGA 58.461 36.000 0.00 0.00 0.00 4.02
2164 2548 6.817765 ACCTGTGTTTTGTAATGATAGTGG 57.182 37.500 0.00 0.00 0.00 4.00
2165 2549 7.870826 TGAACCTGTGTTTTGTAATGATAGTG 58.129 34.615 0.00 0.00 33.97 2.74
2166 2550 8.458573 TTGAACCTGTGTTTTGTAATGATAGT 57.541 30.769 0.00 0.00 33.97 2.12
2167 2551 9.743057 TTTTGAACCTGTGTTTTGTAATGATAG 57.257 29.630 0.00 0.00 33.97 2.08
2169 2553 9.260002 GATTTTGAACCTGTGTTTTGTAATGAT 57.740 29.630 0.00 0.00 33.97 2.45
2170 2554 8.253810 TGATTTTGAACCTGTGTTTTGTAATGA 58.746 29.630 0.00 0.00 33.97 2.57
2171 2555 8.417780 TGATTTTGAACCTGTGTTTTGTAATG 57.582 30.769 0.00 0.00 33.97 1.90
2172 2556 9.612066 AATGATTTTGAACCTGTGTTTTGTAAT 57.388 25.926 0.00 0.00 33.97 1.89
2173 2557 9.092876 GAATGATTTTGAACCTGTGTTTTGTAA 57.907 29.630 0.00 0.00 33.97 2.41
2174 2558 7.708752 GGAATGATTTTGAACCTGTGTTTTGTA 59.291 33.333 0.00 0.00 33.97 2.41
2175 2559 6.538381 GGAATGATTTTGAACCTGTGTTTTGT 59.462 34.615 0.00 0.00 33.97 2.83
2176 2560 6.292274 CGGAATGATTTTGAACCTGTGTTTTG 60.292 38.462 0.00 0.00 33.97 2.44
2177 2561 5.752955 CGGAATGATTTTGAACCTGTGTTTT 59.247 36.000 0.00 0.00 33.97 2.43
2178 2562 5.068460 TCGGAATGATTTTGAACCTGTGTTT 59.932 36.000 0.00 0.00 33.97 2.83
2179 2563 4.582656 TCGGAATGATTTTGAACCTGTGTT 59.417 37.500 0.00 0.00 37.42 3.32
2180 2564 4.141287 TCGGAATGATTTTGAACCTGTGT 58.859 39.130 0.00 0.00 0.00 3.72
2181 2565 4.764679 TCGGAATGATTTTGAACCTGTG 57.235 40.909 0.00 0.00 0.00 3.66
2182 2566 4.158394 CCATCGGAATGATTTTGAACCTGT 59.842 41.667 0.00 0.00 34.13 4.00
2183 2567 4.398988 TCCATCGGAATGATTTTGAACCTG 59.601 41.667 0.00 0.00 34.13 4.00
2184 2568 4.599041 TCCATCGGAATGATTTTGAACCT 58.401 39.130 0.00 0.00 34.13 3.50
2185 2569 4.981806 TCCATCGGAATGATTTTGAACC 57.018 40.909 0.00 0.00 34.13 3.62
2186 2570 6.155827 TGTTTCCATCGGAATGATTTTGAAC 58.844 36.000 0.00 0.00 41.71 3.18
2187 2571 6.338214 TGTTTCCATCGGAATGATTTTGAA 57.662 33.333 0.00 0.00 41.71 2.69
2188 2572 5.973899 TGTTTCCATCGGAATGATTTTGA 57.026 34.783 0.00 0.00 41.71 2.69
2189 2573 8.594687 GTTTATGTTTCCATCGGAATGATTTTG 58.405 33.333 0.00 0.00 41.71 2.44
2190 2574 7.487829 CGTTTATGTTTCCATCGGAATGATTTT 59.512 33.333 0.00 0.00 41.71 1.82
2191 2575 6.972328 CGTTTATGTTTCCATCGGAATGATTT 59.028 34.615 0.00 0.00 41.71 2.17
2192 2576 6.317642 TCGTTTATGTTTCCATCGGAATGATT 59.682 34.615 0.00 0.00 41.71 2.57
2193 2577 5.820423 TCGTTTATGTTTCCATCGGAATGAT 59.180 36.000 0.00 0.00 41.71 2.45
2194 2578 5.179533 TCGTTTATGTTTCCATCGGAATGA 58.820 37.500 0.00 0.00 41.71 2.57
2195 2579 5.478233 TCGTTTATGTTTCCATCGGAATG 57.522 39.130 0.00 0.00 41.71 2.67
2196 2580 6.150474 AGTTTCGTTTATGTTTCCATCGGAAT 59.850 34.615 0.00 0.00 41.71 3.01
2197 2581 5.470777 AGTTTCGTTTATGTTTCCATCGGAA 59.529 36.000 0.00 0.00 40.27 4.30
2198 2582 4.998672 AGTTTCGTTTATGTTTCCATCGGA 59.001 37.500 0.00 0.00 32.29 4.55
2199 2583 5.086058 CAGTTTCGTTTATGTTTCCATCGG 58.914 41.667 0.00 0.00 32.29 4.18
2200 2584 5.922546 TCAGTTTCGTTTATGTTTCCATCG 58.077 37.500 0.00 0.00 32.29 3.84
2201 2585 6.899114 ACTCAGTTTCGTTTATGTTTCCATC 58.101 36.000 0.00 0.00 32.29 3.51
2202 2586 6.877611 ACTCAGTTTCGTTTATGTTTCCAT 57.122 33.333 0.00 0.00 34.97 3.41
2203 2587 6.687081 AACTCAGTTTCGTTTATGTTTCCA 57.313 33.333 0.00 0.00 0.00 3.53
2204 2588 9.750882 GTATAACTCAGTTTCGTTTATGTTTCC 57.249 33.333 0.00 0.00 0.00 3.13
2208 2592 9.298774 GCTAGTATAACTCAGTTTCGTTTATGT 57.701 33.333 0.00 0.00 0.00 2.29
2209 2593 9.517609 AGCTAGTATAACTCAGTTTCGTTTATG 57.482 33.333 0.00 0.00 0.00 1.90
2212 2596 8.738106 ACTAGCTAGTATAACTCAGTTTCGTTT 58.262 33.333 24.97 0.00 34.13 3.60
2213 2597 8.278729 ACTAGCTAGTATAACTCAGTTTCGTT 57.721 34.615 24.97 0.00 34.13 3.85
2214 2598 7.551974 TGACTAGCTAGTATAACTCAGTTTCGT 59.448 37.037 26.11 0.00 36.50 3.85
2215 2599 7.917597 TGACTAGCTAGTATAACTCAGTTTCG 58.082 38.462 26.11 0.00 36.50 3.46
2216 2600 9.887406 GATGACTAGCTAGTATAACTCAGTTTC 57.113 37.037 26.11 9.56 36.50 2.78
2217 2601 8.852135 GGATGACTAGCTAGTATAACTCAGTTT 58.148 37.037 26.11 4.56 36.50 2.66
2218 2602 8.221944 AGGATGACTAGCTAGTATAACTCAGTT 58.778 37.037 26.11 5.25 36.50 3.16
2219 2603 7.663905 CAGGATGACTAGCTAGTATAACTCAGT 59.336 40.741 26.11 1.84 39.69 3.41
2220 2604 7.880713 TCAGGATGACTAGCTAGTATAACTCAG 59.119 40.741 26.11 12.15 42.56 3.35
2221 2605 7.746703 TCAGGATGACTAGCTAGTATAACTCA 58.253 38.462 26.11 18.09 42.56 3.41
2239 2623 5.105473 GCAATGATTTATCCCCATCAGGATG 60.105 44.000 3.29 2.24 46.44 3.51
2241 2625 4.140971 TGCAATGATTTATCCCCATCAGGA 60.141 41.667 0.00 0.00 41.18 3.86
2242 2626 4.154176 TGCAATGATTTATCCCCATCAGG 58.846 43.478 0.00 0.00 32.91 3.86
2243 2627 5.794726 TTGCAATGATTTATCCCCATCAG 57.205 39.130 0.00 0.00 32.91 2.90
2244 2628 6.556974 TTTTGCAATGATTTATCCCCATCA 57.443 33.333 0.00 0.00 33.92 3.07
2279 2663 8.852135 GTCACCATTTCTACTTCTAGCTAGTAT 58.148 37.037 20.10 9.55 0.00 2.12
2280 2664 7.832685 TGTCACCATTTCTACTTCTAGCTAGTA 59.167 37.037 20.10 10.24 0.00 1.82
2281 2665 6.663953 TGTCACCATTTCTACTTCTAGCTAGT 59.336 38.462 20.10 6.76 0.00 2.57
2282 2666 7.067615 TCTGTCACCATTTCTACTTCTAGCTAG 59.932 40.741 15.01 15.01 0.00 3.42
2283 2667 6.890268 TCTGTCACCATTTCTACTTCTAGCTA 59.110 38.462 0.00 0.00 0.00 3.32
2284 2668 5.717178 TCTGTCACCATTTCTACTTCTAGCT 59.283 40.000 0.00 0.00 0.00 3.32
2285 2669 5.967088 TCTGTCACCATTTCTACTTCTAGC 58.033 41.667 0.00 0.00 0.00 3.42
2286 2670 7.704472 GTCATCTGTCACCATTTCTACTTCTAG 59.296 40.741 0.00 0.00 0.00 2.43
2287 2671 7.397476 AGTCATCTGTCACCATTTCTACTTCTA 59.603 37.037 0.00 0.00 0.00 2.10
2288 2672 6.212388 AGTCATCTGTCACCATTTCTACTTCT 59.788 38.462 0.00 0.00 0.00 2.85
2289 2673 6.402222 AGTCATCTGTCACCATTTCTACTTC 58.598 40.000 0.00 0.00 0.00 3.01
2290 2674 6.365970 AGTCATCTGTCACCATTTCTACTT 57.634 37.500 0.00 0.00 0.00 2.24
2291 2675 6.169094 CAAGTCATCTGTCACCATTTCTACT 58.831 40.000 0.00 0.00 0.00 2.57
2292 2676 5.934625 ACAAGTCATCTGTCACCATTTCTAC 59.065 40.000 0.00 0.00 0.00 2.59
2293 2677 6.114187 ACAAGTCATCTGTCACCATTTCTA 57.886 37.500 0.00 0.00 0.00 2.10
2294 2678 4.978099 ACAAGTCATCTGTCACCATTTCT 58.022 39.130 0.00 0.00 0.00 2.52
2295 2679 6.801539 TTACAAGTCATCTGTCACCATTTC 57.198 37.500 0.00 0.00 0.00 2.17
2296 2680 7.765695 ATTTACAAGTCATCTGTCACCATTT 57.234 32.000 0.00 0.00 0.00 2.32
2297 2681 7.765695 AATTTACAAGTCATCTGTCACCATT 57.234 32.000 0.00 0.00 0.00 3.16
2298 2682 7.765695 AAATTTACAAGTCATCTGTCACCAT 57.234 32.000 0.00 0.00 0.00 3.55
2299 2683 7.068103 ACAAAATTTACAAGTCATCTGTCACCA 59.932 33.333 0.00 0.00 0.00 4.17
2300 2684 7.425606 ACAAAATTTACAAGTCATCTGTCACC 58.574 34.615 0.00 0.00 0.00 4.02
2301 2685 9.599322 CTACAAAATTTACAAGTCATCTGTCAC 57.401 33.333 0.00 0.00 0.00 3.67
2302 2686 9.337396 ACTACAAAATTTACAAGTCATCTGTCA 57.663 29.630 0.00 0.00 0.00 3.58
2317 2701 8.720562 GCATGCCTGAATTTTACTACAAAATTT 58.279 29.630 6.36 0.00 39.23 1.82
2318 2702 7.877097 TGCATGCCTGAATTTTACTACAAAATT 59.123 29.630 16.68 7.27 41.11 1.82
2319 2703 7.385267 TGCATGCCTGAATTTTACTACAAAAT 58.615 30.769 16.68 0.00 0.00 1.82
2320 2704 6.753180 TGCATGCCTGAATTTTACTACAAAA 58.247 32.000 16.68 0.00 0.00 2.44
2321 2705 6.338214 TGCATGCCTGAATTTTACTACAAA 57.662 33.333 16.68 0.00 0.00 2.83
2322 2706 5.973899 TGCATGCCTGAATTTTACTACAA 57.026 34.783 16.68 0.00 0.00 2.41
2323 2707 6.377996 AGAATGCATGCCTGAATTTTACTACA 59.622 34.615 16.68 0.00 30.20 2.74
2324 2708 6.799512 AGAATGCATGCCTGAATTTTACTAC 58.200 36.000 16.68 0.00 30.20 2.73
2325 2709 6.039717 GGAGAATGCATGCCTGAATTTTACTA 59.960 38.462 16.68 0.00 30.20 1.82
2326 2710 5.163478 GGAGAATGCATGCCTGAATTTTACT 60.163 40.000 16.68 1.82 30.20 2.24
2327 2711 5.045872 GGAGAATGCATGCCTGAATTTTAC 58.954 41.667 16.68 0.21 30.20 2.01
2328 2712 4.957954 AGGAGAATGCATGCCTGAATTTTA 59.042 37.500 16.68 0.00 30.20 1.52
2329 2713 3.773119 AGGAGAATGCATGCCTGAATTTT 59.227 39.130 16.68 3.12 30.20 1.82
2330 2714 3.371965 AGGAGAATGCATGCCTGAATTT 58.628 40.909 16.68 0.00 30.20 1.82
2331 2715 3.028094 AGGAGAATGCATGCCTGAATT 57.972 42.857 16.68 8.03 32.96 2.17
2332 2716 2.693591 CAAGGAGAATGCATGCCTGAAT 59.306 45.455 16.68 0.00 0.00 2.57
2333 2717 2.097036 CAAGGAGAATGCATGCCTGAA 58.903 47.619 16.68 0.00 0.00 3.02
2334 2718 1.758936 CAAGGAGAATGCATGCCTGA 58.241 50.000 16.68 0.00 0.00 3.86
2335 2719 0.102481 GCAAGGAGAATGCATGCCTG 59.898 55.000 16.68 10.69 43.29 4.85
2336 2720 2.501492 GCAAGGAGAATGCATGCCT 58.499 52.632 16.68 4.72 43.29 4.75
2342 2726 2.162208 TCAACGAATGCAAGGAGAATGC 59.838 45.455 0.00 0.00 44.08 3.56
2343 2727 4.627611 ATCAACGAATGCAAGGAGAATG 57.372 40.909 0.00 0.00 0.00 2.67
2344 2728 5.185454 TGTATCAACGAATGCAAGGAGAAT 58.815 37.500 0.00 0.00 0.00 2.40
2345 2729 4.574892 TGTATCAACGAATGCAAGGAGAA 58.425 39.130 0.00 0.00 0.00 2.87
2346 2730 4.183865 CTGTATCAACGAATGCAAGGAGA 58.816 43.478 0.00 0.00 0.00 3.71
2347 2731 3.310774 CCTGTATCAACGAATGCAAGGAG 59.689 47.826 0.00 0.00 0.00 3.69
2348 2732 3.270027 CCTGTATCAACGAATGCAAGGA 58.730 45.455 0.00 0.00 0.00 3.36
2349 2733 3.009723 ACCTGTATCAACGAATGCAAGG 58.990 45.455 0.00 0.00 0.00 3.61
2350 2734 4.034048 GGTACCTGTATCAACGAATGCAAG 59.966 45.833 4.06 0.00 0.00 4.01
2351 2735 3.936453 GGTACCTGTATCAACGAATGCAA 59.064 43.478 4.06 0.00 0.00 4.08
2352 2736 3.527533 GGTACCTGTATCAACGAATGCA 58.472 45.455 4.06 0.00 0.00 3.96
2363 2747 9.556266 TCGTAAGGATCATCTGGGTACCTGTAT 62.556 44.444 12.72 0.00 46.10 2.29
2364 2748 8.338289 TCGTAAGGATCATCTGGGTACCTGTA 62.338 46.154 12.72 0.00 46.10 2.74
2365 2749 7.637353 TCGTAAGGATCATCTGGGTACCTGT 62.637 48.000 12.72 0.00 46.10 4.00
2369 2753 3.005578 GGTCGTAAGGATCATCTGGGTAC 59.994 52.174 0.00 0.00 38.47 3.34
2375 2759 2.068834 ACCGGTCGTAAGGATCATCT 57.931 50.000 0.00 0.00 38.47 2.90
2378 2762 2.363038 CCATAACCGGTCGTAAGGATCA 59.637 50.000 8.04 0.00 38.47 2.92
2393 2777 2.108362 CTCGACGGGGGCCATAAC 59.892 66.667 4.39 0.00 0.00 1.89
2394 2778 3.857038 GCTCGACGGGGGCCATAA 61.857 66.667 4.39 0.00 0.00 1.90
2407 2791 1.429825 CACTCTGTAGGGTCGCTCG 59.570 63.158 0.00 0.00 0.00 5.03
2409 2793 0.966370 GACCACTCTGTAGGGTCGCT 60.966 60.000 0.00 0.00 41.43 4.93
2410 2794 1.511768 GACCACTCTGTAGGGTCGC 59.488 63.158 0.00 0.00 41.43 5.19
2414 2798 2.516227 TCTCTGACCACTCTGTAGGG 57.484 55.000 0.00 0.00 0.00 3.53
2417 2801 4.576330 TGAGATCTCTGACCACTCTGTA 57.424 45.455 22.95 0.00 0.00 2.74
2420 2804 3.772387 TGTTGAGATCTCTGACCACTCT 58.228 45.455 22.95 0.00 0.00 3.24
2421 2805 4.241681 GTTGTTGAGATCTCTGACCACTC 58.758 47.826 22.95 8.71 0.00 3.51
2429 2813 4.346418 ACACTCTTGGTTGTTGAGATCTCT 59.654 41.667 22.95 0.00 0.00 3.10
2437 2821 6.795399 ACTTTTATCACACTCTTGGTTGTTG 58.205 36.000 0.00 0.00 0.00 3.33
2438 2822 6.238374 CGACTTTTATCACACTCTTGGTTGTT 60.238 38.462 0.00 0.00 0.00 2.83
2441 2825 5.607477 TCGACTTTTATCACACTCTTGGTT 58.393 37.500 0.00 0.00 0.00 3.67
2447 2831 4.184629 AGCCATCGACTTTTATCACACTC 58.815 43.478 0.00 0.00 0.00 3.51
2545 2945 1.887797 ACCTCGGGATGGGATTGTAA 58.112 50.000 0.00 0.00 0.00 2.41
2546 2946 2.779429 TACCTCGGGATGGGATTGTA 57.221 50.000 0.00 0.00 0.00 2.41
2551 2951 2.304761 GCAAATATACCTCGGGATGGGA 59.695 50.000 0.00 0.00 0.00 4.37
2560 2960 7.345192 CGAAGTACAACATGCAAATATACCTC 58.655 38.462 0.00 0.00 0.00 3.85
2576 2976 2.296190 TCTCAAGCTCTGCGAAGTACAA 59.704 45.455 0.00 0.00 0.00 2.41
2578 2978 2.525055 CTCTCAAGCTCTGCGAAGTAC 58.475 52.381 0.00 0.00 0.00 2.73
2593 2993 1.168407 GCACCTTGCTGTTGCTCTCA 61.168 55.000 0.00 0.00 40.96 3.27
2594 2994 1.578423 GCACCTTGCTGTTGCTCTC 59.422 57.895 0.00 0.00 40.96 3.20
2603 3003 2.154798 TAGAACTCGCGCACCTTGCT 62.155 55.000 8.75 0.00 42.25 3.91
2604 3004 1.736645 TAGAACTCGCGCACCTTGC 60.737 57.895 8.75 0.00 40.69 4.01
2605 3005 0.666274 TGTAGAACTCGCGCACCTTG 60.666 55.000 8.75 0.00 0.00 3.61
2606 3006 0.246635 ATGTAGAACTCGCGCACCTT 59.753 50.000 8.75 0.00 0.00 3.50
2607 3007 0.179134 GATGTAGAACTCGCGCACCT 60.179 55.000 8.75 0.00 0.00 4.00
2635 3035 1.538876 AGGGTACAGGAGCTTGCCA 60.539 57.895 0.00 0.00 0.00 4.92
2645 3045 1.064208 CGACATGACGAGAGGGTACAG 59.936 57.143 12.27 0.00 35.09 2.74
2668 3068 1.675641 AGCGGTTACGAGGTACCGT 60.676 57.895 14.25 4.22 46.35 4.83
2682 3082 1.153647 TCGTTGTAGATGGCAGCGG 60.154 57.895 0.00 0.00 40.16 5.52
2685 3085 2.159627 GGTTTGTCGTTGTAGATGGCAG 59.840 50.000 0.00 0.00 29.01 4.85
2698 3098 0.672401 AGCCATGGTACGGTTTGTCG 60.672 55.000 14.67 0.00 0.00 4.35
2707 3107 2.200373 ACTGGTCAAAGCCATGGTAC 57.800 50.000 14.67 4.35 37.96 3.34
2709 3109 1.423541 TGTACTGGTCAAAGCCATGGT 59.576 47.619 14.67 0.00 37.96 3.55
2724 3124 2.932614 GCATTCAGCGAGATGTTGTACT 59.067 45.455 0.00 0.00 0.00 2.73
2776 3176 0.957395 AGAAGACCTCGACGGCGTTA 60.957 55.000 16.19 4.74 38.98 3.18
2796 3196 2.038329 CGGTGGTAGGGAGGACCA 59.962 66.667 0.00 0.00 44.86 4.02
2816 3216 4.954970 CTGGGTTGCCGTGGCTGT 62.955 66.667 12.84 0.00 42.51 4.40
2827 3227 1.755200 ACTGGTTACCATCCTGGGTT 58.245 50.000 3.88 0.00 43.37 4.11
2830 3230 5.888982 ATAGTAACTGGTTACCATCCTGG 57.111 43.478 16.87 0.00 44.79 4.45
2877 3285 6.821616 ACTAGTTACTAGGTCCTAGCTGTA 57.178 41.667 23.70 8.81 38.30 2.74
2879 3287 6.829849 ACTACTAGTTACTAGGTCCTAGCTG 58.170 44.000 23.70 10.99 38.30 4.24
2880 3288 8.740616 ATACTACTAGTTACTAGGTCCTAGCT 57.259 38.462 23.70 15.61 38.30 3.32
2918 3326 7.334421 ACAAAGCTCTTATCAGCGATCTAAAAA 59.666 33.333 0.00 0.00 44.82 1.94
2925 3333 3.620374 CACACAAAGCTCTTATCAGCGAT 59.380 43.478 0.00 0.00 44.82 4.58
2978 3390 4.327885 GGCTCTGATCGCCGTAAG 57.672 61.111 0.00 0.00 37.87 2.34
3051 3463 3.622206 GCTACAACTCAATCCATCCCACA 60.622 47.826 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.