Multiple sequence alignment - TraesCS1A01G343500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G343500 chr1A 100.000 2372 0 0 1 2372 532073888 532076259 0 4381
1 TraesCS1A01G343500 chr5D 98.879 1605 18 0 768 2372 503263812 503262208 0 2865
2 TraesCS1A01G343500 chr5D 98.754 1605 20 0 768 2372 503246236 503247840 0 2854
3 TraesCS1A01G343500 chr3A 98.879 1605 18 0 768 2372 66004169 66002565 0 2865
4 TraesCS1A01G343500 chr2A 98.816 1605 19 0 768 2372 726905491 726903887 0 2859
5 TraesCS1A01G343500 chr2A 94.955 674 28 1 3 670 8392240 8391567 0 1051
6 TraesCS1A01G343500 chr2D 98.754 1605 20 0 768 2372 272811282 272809678 0 2854
7 TraesCS1A01G343500 chr2D 98.505 1605 24 0 768 2372 591985573 591987177 0 2832
8 TraesCS1A01G343500 chr6D 98.629 1605 22 0 768 2372 389244858 389243254 0 2843
9 TraesCS1A01G343500 chr3D 98.505 1605 23 1 768 2372 589262562 589260959 0 2830
10 TraesCS1A01G343500 chr1D 98.131 1605 30 0 768 2372 459903753 459902149 0 2798
11 TraesCS1A01G343500 chr6B 90.318 661 64 0 7 667 114025555 114026215 0 867
12 TraesCS1A01G343500 chr6B 89.970 668 67 0 3 670 564204549 564203882 0 863
13 TraesCS1A01G343500 chr6B 86.637 666 82 5 7 670 677893323 677892663 0 730
14 TraesCS1A01G343500 chr2B 89.701 670 63 1 7 670 550850052 550849383 0 850
15 TraesCS1A01G343500 chr2B 89.568 671 64 1 3 667 31113435 31114105 0 846
16 TraesCS1A01G343500 chr3B 88.772 668 75 0 3 670 452477425 452476758 0 819
17 TraesCS1A01G343500 chr5B 88.060 670 71 2 4 667 103371678 103372344 0 785
18 TraesCS1A01G343500 chr7B 88.055 653 78 0 7 659 577120315 577120967 0 774


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G343500 chr1A 532073888 532076259 2371 False 4381 4381 100.000 1 2372 1 chr1A.!!$F1 2371
1 TraesCS1A01G343500 chr5D 503262208 503263812 1604 True 2865 2865 98.879 768 2372 1 chr5D.!!$R1 1604
2 TraesCS1A01G343500 chr5D 503246236 503247840 1604 False 2854 2854 98.754 768 2372 1 chr5D.!!$F1 1604
3 TraesCS1A01G343500 chr3A 66002565 66004169 1604 True 2865 2865 98.879 768 2372 1 chr3A.!!$R1 1604
4 TraesCS1A01G343500 chr2A 726903887 726905491 1604 True 2859 2859 98.816 768 2372 1 chr2A.!!$R2 1604
5 TraesCS1A01G343500 chr2A 8391567 8392240 673 True 1051 1051 94.955 3 670 1 chr2A.!!$R1 667
6 TraesCS1A01G343500 chr2D 272809678 272811282 1604 True 2854 2854 98.754 768 2372 1 chr2D.!!$R1 1604
7 TraesCS1A01G343500 chr2D 591985573 591987177 1604 False 2832 2832 98.505 768 2372 1 chr2D.!!$F1 1604
8 TraesCS1A01G343500 chr6D 389243254 389244858 1604 True 2843 2843 98.629 768 2372 1 chr6D.!!$R1 1604
9 TraesCS1A01G343500 chr3D 589260959 589262562 1603 True 2830 2830 98.505 768 2372 1 chr3D.!!$R1 1604
10 TraesCS1A01G343500 chr1D 459902149 459903753 1604 True 2798 2798 98.131 768 2372 1 chr1D.!!$R1 1604
11 TraesCS1A01G343500 chr6B 114025555 114026215 660 False 867 867 90.318 7 667 1 chr6B.!!$F1 660
12 TraesCS1A01G343500 chr6B 564203882 564204549 667 True 863 863 89.970 3 670 1 chr6B.!!$R1 667
13 TraesCS1A01G343500 chr6B 677892663 677893323 660 True 730 730 86.637 7 670 1 chr6B.!!$R2 663
14 TraesCS1A01G343500 chr2B 550849383 550850052 669 True 850 850 89.701 7 670 1 chr2B.!!$R1 663
15 TraesCS1A01G343500 chr2B 31113435 31114105 670 False 846 846 89.568 3 667 1 chr2B.!!$F1 664
16 TraesCS1A01G343500 chr3B 452476758 452477425 667 True 819 819 88.772 3 670 1 chr3B.!!$R1 667
17 TraesCS1A01G343500 chr5B 103371678 103372344 666 False 785 785 88.060 4 667 1 chr5B.!!$F1 663
18 TraesCS1A01G343500 chr7B 577120315 577120967 652 False 774 774 88.055 7 659 1 chr7B.!!$F1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 637 0.028902 GTGGATTTAATGGCGGCGTC 59.971 55.0 3.62 3.62 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 1892 1.25084 CCTTAACCAAGCCACTGCCC 61.251 60.0 0.0 0.0 38.69 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.139163 GCACGGAAATGCAAACCAAG 58.861 50.000 0.00 0.00 45.39 3.61
77 78 1.279539 CGCGTTGTTGTGTCTGCAT 59.720 52.632 0.00 0.00 0.00 3.96
129 130 4.767255 GCCAGACGGTCCCAGCAG 62.767 72.222 4.14 0.00 33.28 4.24
130 131 4.087892 CCAGACGGTCCCAGCAGG 62.088 72.222 4.14 0.00 0.00 4.85
140 141 4.972875 CCAGCAGGGATGAACTCC 57.027 61.111 0.00 0.00 44.11 3.85
141 142 1.153289 CCAGCAGGGATGAACTCCG 60.153 63.158 0.00 0.00 46.01 4.63
142 143 1.153289 CAGCAGGGATGAACTCCGG 60.153 63.158 0.00 0.00 46.01 5.14
143 144 1.613630 AGCAGGGATGAACTCCGGT 60.614 57.895 0.00 0.00 46.01 5.28
144 145 1.450312 GCAGGGATGAACTCCGGTG 60.450 63.158 0.00 0.00 46.01 4.94
145 146 1.221840 CAGGGATGAACTCCGGTGG 59.778 63.158 8.63 2.00 46.01 4.61
146 147 1.995626 AGGGATGAACTCCGGTGGG 60.996 63.158 8.63 0.00 46.01 4.61
147 148 1.993391 GGGATGAACTCCGGTGGGA 60.993 63.158 8.63 0.00 46.01 4.37
148 149 1.345715 GGGATGAACTCCGGTGGGAT 61.346 60.000 8.63 0.00 46.01 3.85
149 150 0.106894 GGATGAACTCCGGTGGGATC 59.893 60.000 8.63 5.91 42.83 3.36
150 151 0.106894 GATGAACTCCGGTGGGATCC 59.893 60.000 1.92 1.92 42.83 3.36
151 152 0.326618 ATGAACTCCGGTGGGATCCT 60.327 55.000 12.58 0.00 42.83 3.24
152 153 1.264749 TGAACTCCGGTGGGATCCTG 61.265 60.000 12.58 0.00 42.83 3.86
153 154 1.972660 GAACTCCGGTGGGATCCTGG 61.973 65.000 12.58 8.97 42.83 4.45
154 155 3.866582 CTCCGGTGGGATCCTGGC 61.867 72.222 12.58 1.95 42.83 4.85
157 158 3.550431 CGGTGGGATCCTGGCGAT 61.550 66.667 12.58 0.00 0.00 4.58
158 159 2.427753 GGTGGGATCCTGGCGATC 59.572 66.667 12.58 0.00 45.91 3.69
163 164 3.064416 GATCCTGGCGATCCCCTC 58.936 66.667 0.00 0.00 41.51 4.30
164 165 2.527875 ATCCTGGCGATCCCCTCC 60.528 66.667 0.00 0.00 0.00 4.30
165 166 4.880426 TCCTGGCGATCCCCTCCC 62.880 72.222 0.00 0.00 0.00 4.30
167 168 3.866582 CTGGCGATCCCCTCCCAC 61.867 72.222 0.00 0.00 0.00 4.61
170 171 4.222847 GCGATCCCCTCCCACGAC 62.223 72.222 0.00 0.00 0.00 4.34
171 172 3.900892 CGATCCCCTCCCACGACG 61.901 72.222 0.00 0.00 0.00 5.12
172 173 3.537874 GATCCCCTCCCACGACGG 61.538 72.222 0.00 0.00 0.00 4.79
173 174 4.393778 ATCCCCTCCCACGACGGT 62.394 66.667 0.00 0.00 0.00 4.83
182 183 2.815211 CACGACGGTGGCCTGATG 60.815 66.667 3.32 0.00 40.58 3.07
183 184 3.311110 ACGACGGTGGCCTGATGT 61.311 61.111 3.32 0.00 0.00 3.06
184 185 2.047274 CGACGGTGGCCTGATGTT 60.047 61.111 3.32 0.00 0.00 2.71
185 186 2.390599 CGACGGTGGCCTGATGTTG 61.391 63.158 3.32 0.00 0.00 3.33
186 187 1.003839 GACGGTGGCCTGATGTTGA 60.004 57.895 3.32 0.00 0.00 3.18
187 188 1.003355 ACGGTGGCCTGATGTTGAG 60.003 57.895 3.32 0.00 0.00 3.02
188 189 2.401766 CGGTGGCCTGATGTTGAGC 61.402 63.158 3.32 0.00 0.00 4.26
189 190 2.048603 GGTGGCCTGATGTTGAGCC 61.049 63.158 3.32 0.00 45.96 4.70
190 191 1.001641 GTGGCCTGATGTTGAGCCT 60.002 57.895 3.32 0.00 45.94 4.58
191 192 0.610232 GTGGCCTGATGTTGAGCCTT 60.610 55.000 3.32 0.00 45.94 4.35
192 193 0.609957 TGGCCTGATGTTGAGCCTTG 60.610 55.000 3.32 0.00 45.94 3.61
193 194 0.322816 GGCCTGATGTTGAGCCTTGA 60.323 55.000 0.00 0.00 42.34 3.02
194 195 1.093159 GCCTGATGTTGAGCCTTGAG 58.907 55.000 0.00 0.00 0.00 3.02
195 196 1.747709 CCTGATGTTGAGCCTTGAGG 58.252 55.000 0.00 0.00 38.53 3.86
196 197 1.681166 CCTGATGTTGAGCCTTGAGGG 60.681 57.143 0.00 0.00 35.18 4.30
197 198 0.329261 TGATGTTGAGCCTTGAGGGG 59.671 55.000 0.00 0.00 35.18 4.79
203 204 4.035102 AGCCTTGAGGGGTTCGCC 62.035 66.667 0.00 0.00 44.41 5.54
205 206 4.016706 CCTTGAGGGGTTCGCCGT 62.017 66.667 0.41 0.00 38.45 5.68
206 207 2.434359 CTTGAGGGGTTCGCCGTC 60.434 66.667 0.41 0.00 38.45 4.79
207 208 3.952628 CTTGAGGGGTTCGCCGTCC 62.953 68.421 0.00 0.00 38.45 4.79
209 210 4.452733 GAGGGGTTCGCCGTCCTG 62.453 72.222 0.41 0.00 38.45 3.86
211 212 4.011517 GGGGTTCGCCGTCCTGAA 62.012 66.667 1.95 0.00 38.45 3.02
212 213 2.434359 GGGTTCGCCGTCCTGAAG 60.434 66.667 1.95 0.00 38.45 3.02
213 214 2.342648 GGTTCGCCGTCCTGAAGT 59.657 61.111 0.00 0.00 0.00 3.01
214 215 1.301479 GGTTCGCCGTCCTGAAGTT 60.301 57.895 0.00 0.00 0.00 2.66
215 216 1.289800 GGTTCGCCGTCCTGAAGTTC 61.290 60.000 0.00 0.00 0.00 3.01
216 217 0.319641 GTTCGCCGTCCTGAAGTTCT 60.320 55.000 4.17 0.00 0.00 3.01
217 218 0.038526 TTCGCCGTCCTGAAGTTCTC 60.039 55.000 4.17 0.00 0.00 2.87
218 219 1.446272 CGCCGTCCTGAAGTTCTCC 60.446 63.158 4.17 0.00 0.00 3.71
219 220 1.079057 GCCGTCCTGAAGTTCTCCC 60.079 63.158 4.17 0.00 0.00 4.30
220 221 1.827399 GCCGTCCTGAAGTTCTCCCA 61.827 60.000 4.17 0.00 0.00 4.37
221 222 0.247736 CCGTCCTGAAGTTCTCCCAG 59.752 60.000 4.17 0.00 0.00 4.45
222 223 0.390472 CGTCCTGAAGTTCTCCCAGC 60.390 60.000 4.17 0.00 0.00 4.85
223 224 0.390472 GTCCTGAAGTTCTCCCAGCG 60.390 60.000 4.17 0.00 0.00 5.18
224 225 1.078848 CCTGAAGTTCTCCCAGCGG 60.079 63.158 4.17 0.00 0.00 5.52
225 226 1.078848 CTGAAGTTCTCCCAGCGGG 60.079 63.158 4.17 7.24 46.11 6.13
226 227 2.436824 GAAGTTCTCCCAGCGGGC 60.437 66.667 8.57 0.00 43.94 6.13
227 228 4.394712 AAGTTCTCCCAGCGGGCG 62.395 66.667 8.57 3.30 43.94 6.13
245 246 3.211963 GCCTGCCGCGGATTTGAT 61.212 61.111 33.48 0.00 0.00 2.57
246 247 2.717485 CCTGCCGCGGATTTGATG 59.283 61.111 33.48 9.30 0.00 3.07
247 248 1.819208 CCTGCCGCGGATTTGATGA 60.819 57.895 33.48 0.00 0.00 2.92
248 249 1.168407 CCTGCCGCGGATTTGATGAT 61.168 55.000 33.48 0.00 0.00 2.45
249 250 0.664761 CTGCCGCGGATTTGATGATT 59.335 50.000 33.48 0.00 0.00 2.57
250 251 0.662619 TGCCGCGGATTTGATGATTC 59.337 50.000 33.48 6.69 0.00 2.52
251 252 0.040067 GCCGCGGATTTGATGATTCC 60.040 55.000 33.48 1.16 0.00 3.01
255 256 1.597742 CGGATTTGATGATTCCGCCT 58.402 50.000 0.00 0.00 42.36 5.52
256 257 1.949525 CGGATTTGATGATTCCGCCTT 59.050 47.619 0.00 0.00 42.36 4.35
257 258 2.031682 CGGATTTGATGATTCCGCCTTC 60.032 50.000 0.00 0.00 42.36 3.46
258 259 3.217626 GGATTTGATGATTCCGCCTTCT 58.782 45.455 0.00 0.00 0.00 2.85
259 260 3.004106 GGATTTGATGATTCCGCCTTCTG 59.996 47.826 0.00 0.00 0.00 3.02
260 261 3.348647 TTTGATGATTCCGCCTTCTGA 57.651 42.857 0.00 0.00 0.00 3.27
261 262 3.348647 TTGATGATTCCGCCTTCTGAA 57.651 42.857 0.00 0.00 0.00 3.02
262 263 3.565764 TGATGATTCCGCCTTCTGAAT 57.434 42.857 0.00 0.00 34.02 2.57
263 264 3.889815 TGATGATTCCGCCTTCTGAATT 58.110 40.909 0.00 0.00 31.56 2.17
264 265 3.628942 TGATGATTCCGCCTTCTGAATTG 59.371 43.478 0.00 0.00 31.56 2.32
265 266 1.745087 TGATTCCGCCTTCTGAATTGC 59.255 47.619 0.00 0.00 31.56 3.56
266 267 1.066152 GATTCCGCCTTCTGAATTGCC 59.934 52.381 6.50 0.00 31.56 4.52
267 268 0.965363 TTCCGCCTTCTGAATTGCCC 60.965 55.000 6.50 0.00 0.00 5.36
268 269 1.678635 CCGCCTTCTGAATTGCCCA 60.679 57.895 6.50 0.00 0.00 5.36
269 270 1.660560 CCGCCTTCTGAATTGCCCAG 61.661 60.000 6.50 0.00 0.00 4.45
270 271 0.677731 CGCCTTCTGAATTGCCCAGA 60.678 55.000 6.50 0.00 38.74 3.86
271 272 1.549203 GCCTTCTGAATTGCCCAGAA 58.451 50.000 7.59 7.59 45.30 3.02
276 277 4.371624 TTCTGAATTGCCCAGAAGAGAA 57.628 40.909 4.42 0.00 43.39 2.87
277 278 3.947868 TCTGAATTGCCCAGAAGAGAAG 58.052 45.455 0.00 0.00 37.68 2.85
278 279 2.422832 CTGAATTGCCCAGAAGAGAAGC 59.577 50.000 0.00 0.00 33.65 3.86
279 280 2.040813 TGAATTGCCCAGAAGAGAAGCT 59.959 45.455 0.00 0.00 0.00 3.74
280 281 2.416680 ATTGCCCAGAAGAGAAGCTC 57.583 50.000 0.00 0.00 0.00 4.09
281 282 0.326264 TTGCCCAGAAGAGAAGCTCC 59.674 55.000 0.00 0.00 0.00 4.70
282 283 0.837691 TGCCCAGAAGAGAAGCTCCA 60.838 55.000 0.00 0.00 0.00 3.86
283 284 0.392327 GCCCAGAAGAGAAGCTCCAC 60.392 60.000 0.00 0.00 0.00 4.02
284 285 0.979665 CCCAGAAGAGAAGCTCCACA 59.020 55.000 0.00 0.00 0.00 4.17
285 286 1.558756 CCCAGAAGAGAAGCTCCACAT 59.441 52.381 0.00 0.00 0.00 3.21
286 287 2.419851 CCCAGAAGAGAAGCTCCACATC 60.420 54.545 0.00 0.00 0.00 3.06
287 288 2.419851 CCAGAAGAGAAGCTCCACATCC 60.420 54.545 0.00 0.00 0.00 3.51
288 289 2.500910 CAGAAGAGAAGCTCCACATCCT 59.499 50.000 0.00 0.00 0.00 3.24
289 290 2.765699 AGAAGAGAAGCTCCACATCCTC 59.234 50.000 0.00 0.00 0.00 3.71
290 291 1.110442 AGAGAAGCTCCACATCCTCG 58.890 55.000 0.00 0.00 0.00 4.63
291 292 0.529555 GAGAAGCTCCACATCCTCGC 60.530 60.000 0.00 0.00 0.00 5.03
292 293 1.219124 GAAGCTCCACATCCTCGCA 59.781 57.895 0.00 0.00 0.00 5.10
293 294 0.391661 GAAGCTCCACATCCTCGCAA 60.392 55.000 0.00 0.00 0.00 4.85
294 295 0.674895 AAGCTCCACATCCTCGCAAC 60.675 55.000 0.00 0.00 0.00 4.17
295 296 2.109126 GCTCCACATCCTCGCAACC 61.109 63.158 0.00 0.00 0.00 3.77
296 297 1.811266 CTCCACATCCTCGCAACCG 60.811 63.158 0.00 0.00 0.00 4.44
297 298 2.047274 CCACATCCTCGCAACCGT 60.047 61.111 0.00 0.00 35.54 4.83
298 299 2.100631 CCACATCCTCGCAACCGTC 61.101 63.158 0.00 0.00 35.54 4.79
299 300 2.126071 ACATCCTCGCAACCGTCG 60.126 61.111 0.00 0.00 35.54 5.12
300 301 2.126071 CATCCTCGCAACCGTCGT 60.126 61.111 0.00 0.00 35.54 4.34
301 302 2.158959 CATCCTCGCAACCGTCGTC 61.159 63.158 0.00 0.00 35.54 4.20
302 303 2.341101 ATCCTCGCAACCGTCGTCT 61.341 57.895 0.00 0.00 35.54 4.18
303 304 2.267681 ATCCTCGCAACCGTCGTCTC 62.268 60.000 0.00 0.00 35.54 3.36
304 305 2.504244 CTCGCAACCGTCGTCTCC 60.504 66.667 0.00 0.00 35.54 3.71
305 306 4.394078 TCGCAACCGTCGTCTCCG 62.394 66.667 0.00 0.00 35.54 4.63
306 307 4.394078 CGCAACCGTCGTCTCCGA 62.394 66.667 0.00 0.00 41.73 4.55
307 308 2.181021 GCAACCGTCGTCTCCGAT 59.819 61.111 0.00 0.00 46.30 4.18
308 309 2.158959 GCAACCGTCGTCTCCGATG 61.159 63.158 0.00 0.00 46.30 3.84
313 314 3.984241 GTCGTCTCCGATGAAGCG 58.016 61.111 0.00 0.00 46.30 4.68
314 315 2.102357 TCGTCTCCGATGAAGCGC 59.898 61.111 0.00 0.00 38.40 5.92
315 316 3.315521 CGTCTCCGATGAAGCGCG 61.316 66.667 0.00 0.00 35.63 6.86
316 317 3.621394 GTCTCCGATGAAGCGCGC 61.621 66.667 26.66 26.66 0.00 6.86
350 351 3.044305 GCGTGGCGGAGGATATGC 61.044 66.667 0.00 0.00 0.00 3.14
351 352 2.421314 CGTGGCGGAGGATATGCA 59.579 61.111 0.00 0.00 0.00 3.96
352 353 1.004560 CGTGGCGGAGGATATGCAT 60.005 57.895 3.79 3.79 0.00 3.96
353 354 1.293963 CGTGGCGGAGGATATGCATG 61.294 60.000 10.16 0.00 0.00 4.06
354 355 0.250467 GTGGCGGAGGATATGCATGT 60.250 55.000 10.16 1.23 0.00 3.21
355 356 0.250424 TGGCGGAGGATATGCATGTG 60.250 55.000 10.16 0.00 0.00 3.21
356 357 0.957395 GGCGGAGGATATGCATGTGG 60.957 60.000 10.16 0.00 0.00 4.17
357 358 0.035317 GCGGAGGATATGCATGTGGA 59.965 55.000 10.16 0.00 0.00 4.02
358 359 1.339438 GCGGAGGATATGCATGTGGAT 60.339 52.381 10.16 0.00 0.00 3.41
359 360 2.625737 CGGAGGATATGCATGTGGATC 58.374 52.381 10.16 3.91 0.00 3.36
360 361 2.235650 CGGAGGATATGCATGTGGATCT 59.764 50.000 10.16 0.00 0.00 2.75
361 362 3.678252 CGGAGGATATGCATGTGGATCTC 60.678 52.174 10.16 6.77 0.00 2.75
362 363 3.370315 GGAGGATATGCATGTGGATCTCC 60.370 52.174 10.16 11.70 38.72 3.71
363 364 2.575279 AGGATATGCATGTGGATCTCCC 59.425 50.000 10.16 0.00 39.06 4.30
364 365 2.356535 GGATATGCATGTGGATCTCCCC 60.357 54.545 10.16 0.00 34.52 4.81
365 366 1.067295 TATGCATGTGGATCTCCCCC 58.933 55.000 10.16 0.00 34.29 5.40
399 400 2.268920 GGAAGCGCTCCATCACCA 59.731 61.111 12.06 0.00 44.67 4.17
400 401 2.109126 GGAAGCGCTCCATCACCAC 61.109 63.158 12.06 0.00 44.67 4.16
401 402 2.045926 AAGCGCTCCATCACCACC 60.046 61.111 12.06 0.00 0.00 4.61
402 403 3.628646 AAGCGCTCCATCACCACCC 62.629 63.158 12.06 0.00 0.00 4.61
406 407 3.402681 CTCCATCACCACCCGCCT 61.403 66.667 0.00 0.00 0.00 5.52
407 408 3.391665 CTCCATCACCACCCGCCTC 62.392 68.421 0.00 0.00 0.00 4.70
408 409 3.716195 CCATCACCACCCGCCTCA 61.716 66.667 0.00 0.00 0.00 3.86
409 410 2.591753 CATCACCACCCGCCTCAT 59.408 61.111 0.00 0.00 0.00 2.90
410 411 1.524621 CATCACCACCCGCCTCATC 60.525 63.158 0.00 0.00 0.00 2.92
411 412 1.690633 ATCACCACCCGCCTCATCT 60.691 57.895 0.00 0.00 0.00 2.90
412 413 1.690219 ATCACCACCCGCCTCATCTC 61.690 60.000 0.00 0.00 0.00 2.75
413 414 2.039624 ACCACCCGCCTCATCTCT 59.960 61.111 0.00 0.00 0.00 3.10
414 415 2.060980 ACCACCCGCCTCATCTCTC 61.061 63.158 0.00 0.00 0.00 3.20
415 416 2.415010 CACCCGCCTCATCTCTCG 59.585 66.667 0.00 0.00 0.00 4.04
416 417 2.835431 ACCCGCCTCATCTCTCGG 60.835 66.667 0.00 0.00 41.41 4.63
417 418 4.292178 CCCGCCTCATCTCTCGGC 62.292 72.222 0.00 0.00 40.49 5.54
420 421 2.334653 GCCTCATCTCTCGGCGAG 59.665 66.667 30.10 30.10 41.30 5.03
421 422 2.334653 CCTCATCTCTCGGCGAGC 59.665 66.667 31.01 0.00 39.70 5.03
422 423 2.334653 CTCATCTCTCGGCGAGCC 59.665 66.667 31.01 3.59 39.70 4.70
423 424 2.124109 TCATCTCTCGGCGAGCCT 60.124 61.111 31.01 15.10 39.70 4.58
424 425 2.128853 CTCATCTCTCGGCGAGCCTC 62.129 65.000 31.01 0.00 39.70 4.70
425 426 2.909965 ATCTCTCGGCGAGCCTCC 60.910 66.667 31.01 0.00 39.70 4.30
448 449 2.563942 GAGCGGATCGATCTCGGG 59.436 66.667 26.56 15.80 39.28 5.14
449 450 3.618710 GAGCGGATCGATCTCGGGC 62.619 68.421 26.56 22.06 39.28 6.13
450 451 3.978491 GCGGATCGATCTCGGGCA 61.978 66.667 26.56 0.00 40.29 5.36
451 452 2.256764 CGGATCGATCTCGGGCAG 59.743 66.667 23.96 4.74 40.29 4.85
452 453 2.048690 GGATCGATCTCGGGCAGC 60.049 66.667 23.96 1.95 40.29 5.25
453 454 2.429907 GATCGATCTCGGGCAGCG 60.430 66.667 18.29 0.00 40.29 5.18
454 455 3.905705 GATCGATCTCGGGCAGCGG 62.906 68.421 18.29 0.00 40.29 5.52
476 477 2.032681 GCAACTGGAGGCGGAAGT 59.967 61.111 0.00 0.00 0.00 3.01
477 478 2.328099 GCAACTGGAGGCGGAAGTG 61.328 63.158 0.00 0.00 0.00 3.16
478 479 2.032681 AACTGGAGGCGGAAGTGC 59.967 61.111 0.00 0.00 0.00 4.40
512 513 4.025401 CGTGCCACCGGAACAAGC 62.025 66.667 9.46 3.48 28.25 4.01
513 514 3.670377 GTGCCACCGGAACAAGCC 61.670 66.667 9.46 0.00 29.85 4.35
521 522 3.733960 GGAACAAGCCGGCGAACC 61.734 66.667 23.20 17.13 0.00 3.62
522 523 3.733960 GAACAAGCCGGCGAACCC 61.734 66.667 23.20 8.17 0.00 4.11
551 552 2.494445 CGTCACGCTCCAGCCATA 59.506 61.111 0.00 0.00 37.91 2.74
552 553 1.878522 CGTCACGCTCCAGCCATAC 60.879 63.158 0.00 0.00 37.91 2.39
553 554 1.878522 GTCACGCTCCAGCCATACG 60.879 63.158 0.00 0.00 37.91 3.06
554 555 2.184322 CACGCTCCAGCCATACGT 59.816 61.111 0.00 0.00 37.91 3.57
555 556 1.878522 CACGCTCCAGCCATACGTC 60.879 63.158 0.00 0.00 37.91 4.34
556 557 2.052690 ACGCTCCAGCCATACGTCT 61.053 57.895 0.00 0.00 37.91 4.18
557 558 1.141881 CGCTCCAGCCATACGTCTT 59.858 57.895 0.00 0.00 37.91 3.01
558 559 0.872021 CGCTCCAGCCATACGTCTTC 60.872 60.000 0.00 0.00 37.91 2.87
559 560 0.461961 GCTCCAGCCATACGTCTTCT 59.538 55.000 0.00 0.00 34.31 2.85
560 561 1.537135 GCTCCAGCCATACGTCTTCTC 60.537 57.143 0.00 0.00 34.31 2.87
561 562 1.751351 CTCCAGCCATACGTCTTCTCA 59.249 52.381 0.00 0.00 0.00 3.27
562 563 2.166459 CTCCAGCCATACGTCTTCTCAA 59.834 50.000 0.00 0.00 0.00 3.02
563 564 2.094182 TCCAGCCATACGTCTTCTCAAC 60.094 50.000 0.00 0.00 0.00 3.18
564 565 2.093973 CCAGCCATACGTCTTCTCAACT 60.094 50.000 0.00 0.00 0.00 3.16
565 566 2.926200 CAGCCATACGTCTTCTCAACTG 59.074 50.000 0.00 0.00 0.00 3.16
566 567 1.661112 GCCATACGTCTTCTCAACTGC 59.339 52.381 0.00 0.00 0.00 4.40
567 568 1.920574 CCATACGTCTTCTCAACTGCG 59.079 52.381 0.00 0.00 0.00 5.18
568 569 1.920574 CATACGTCTTCTCAACTGCGG 59.079 52.381 0.00 0.00 0.00 5.69
569 570 1.241165 TACGTCTTCTCAACTGCGGA 58.759 50.000 0.00 0.00 0.00 5.54
570 571 0.603569 ACGTCTTCTCAACTGCGGAT 59.396 50.000 0.00 0.00 0.00 4.18
571 572 1.000955 ACGTCTTCTCAACTGCGGATT 59.999 47.619 0.00 0.00 0.00 3.01
572 573 2.069273 CGTCTTCTCAACTGCGGATTT 58.931 47.619 0.00 0.00 0.00 2.17
573 574 2.159787 CGTCTTCTCAACTGCGGATTTG 60.160 50.000 0.00 0.33 0.00 2.32
574 575 2.160417 GTCTTCTCAACTGCGGATTTGG 59.840 50.000 7.15 0.00 0.00 3.28
575 576 2.038426 TCTTCTCAACTGCGGATTTGGA 59.962 45.455 7.15 1.44 0.00 3.53
576 577 2.099141 TCTCAACTGCGGATTTGGAG 57.901 50.000 7.15 4.21 0.00 3.86
577 578 0.449388 CTCAACTGCGGATTTGGAGC 59.551 55.000 7.15 0.00 0.00 4.70
578 579 0.250684 TCAACTGCGGATTTGGAGCA 60.251 50.000 7.15 0.00 39.25 4.26
581 582 2.045045 TGCGGATTTGGAGCAGGG 60.045 61.111 0.00 0.00 35.81 4.45
582 583 2.272146 GCGGATTTGGAGCAGGGA 59.728 61.111 0.00 0.00 0.00 4.20
583 584 1.821332 GCGGATTTGGAGCAGGGAG 60.821 63.158 0.00 0.00 0.00 4.30
584 585 1.907739 CGGATTTGGAGCAGGGAGA 59.092 57.895 0.00 0.00 0.00 3.71
585 586 0.179062 CGGATTTGGAGCAGGGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
586 587 0.465278 GGATTTGGAGCAGGGAGAGC 60.465 60.000 0.00 0.00 0.00 4.09
587 588 0.545646 GATTTGGAGCAGGGAGAGCT 59.454 55.000 0.00 0.00 46.82 4.09
592 593 3.536164 AGCAGGGAGAGCTCGATG 58.464 61.111 8.37 7.08 38.01 3.84
593 594 1.381056 AGCAGGGAGAGCTCGATGT 60.381 57.895 8.37 0.00 38.01 3.06
594 595 1.227205 GCAGGGAGAGCTCGATGTG 60.227 63.158 8.37 6.46 0.00 3.21
595 596 1.440893 CAGGGAGAGCTCGATGTGG 59.559 63.158 8.37 0.00 0.00 4.17
596 597 1.000993 AGGGAGAGCTCGATGTGGT 59.999 57.895 8.37 0.00 0.00 4.16
597 598 1.142748 GGGAGAGCTCGATGTGGTG 59.857 63.158 8.37 0.00 0.00 4.17
598 599 1.608717 GGGAGAGCTCGATGTGGTGT 61.609 60.000 8.37 0.00 0.00 4.16
599 600 0.459237 GGAGAGCTCGATGTGGTGTG 60.459 60.000 8.37 0.00 0.00 3.82
600 601 0.459237 GAGAGCTCGATGTGGTGTGG 60.459 60.000 8.37 0.00 0.00 4.17
601 602 1.448540 GAGCTCGATGTGGTGTGGG 60.449 63.158 0.00 0.00 0.00 4.61
602 603 2.436646 GCTCGATGTGGTGTGGGG 60.437 66.667 0.00 0.00 0.00 4.96
603 604 2.268920 CTCGATGTGGTGTGGGGG 59.731 66.667 0.00 0.00 0.00 5.40
604 605 2.528127 TCGATGTGGTGTGGGGGT 60.528 61.111 0.00 0.00 0.00 4.95
605 606 2.359850 CGATGTGGTGTGGGGGTG 60.360 66.667 0.00 0.00 0.00 4.61
606 607 2.035626 GATGTGGTGTGGGGGTGG 59.964 66.667 0.00 0.00 0.00 4.61
607 608 3.583882 GATGTGGTGTGGGGGTGGG 62.584 68.421 0.00 0.00 0.00 4.61
609 610 4.596585 GTGGTGTGGGGGTGGGTG 62.597 72.222 0.00 0.00 0.00 4.61
613 614 4.865228 TGTGGGGGTGGGTGGGAA 62.865 66.667 0.00 0.00 0.00 3.97
614 615 3.979497 GTGGGGGTGGGTGGGAAG 61.979 72.222 0.00 0.00 0.00 3.46
617 618 4.366684 GGGGTGGGTGGGAAGCTG 62.367 72.222 0.00 0.00 0.00 4.24
618 619 3.580319 GGGTGGGTGGGAAGCTGT 61.580 66.667 0.00 0.00 0.00 4.40
619 620 2.282462 GGTGGGTGGGAAGCTGTG 60.282 66.667 0.00 0.00 0.00 3.66
620 621 2.282462 GTGGGTGGGAAGCTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
621 622 2.449518 TGGGTGGGAAGCTGTGGA 60.450 61.111 0.00 0.00 0.00 4.02
622 623 1.852157 TGGGTGGGAAGCTGTGGAT 60.852 57.895 0.00 0.00 0.00 3.41
623 624 1.384191 GGGTGGGAAGCTGTGGATT 59.616 57.895 0.00 0.00 0.00 3.01
624 625 0.251787 GGGTGGGAAGCTGTGGATTT 60.252 55.000 0.00 0.00 0.00 2.17
625 626 1.005450 GGGTGGGAAGCTGTGGATTTA 59.995 52.381 0.00 0.00 0.00 1.40
626 627 2.556559 GGGTGGGAAGCTGTGGATTTAA 60.557 50.000 0.00 0.00 0.00 1.52
627 628 3.365472 GGTGGGAAGCTGTGGATTTAAT 58.635 45.455 0.00 0.00 0.00 1.40
628 629 3.131046 GGTGGGAAGCTGTGGATTTAATG 59.869 47.826 0.00 0.00 0.00 1.90
629 630 3.131046 GTGGGAAGCTGTGGATTTAATGG 59.869 47.826 0.00 0.00 0.00 3.16
630 631 2.101415 GGGAAGCTGTGGATTTAATGGC 59.899 50.000 0.00 0.00 0.00 4.40
631 632 2.223572 GGAAGCTGTGGATTTAATGGCG 60.224 50.000 0.00 0.00 0.00 5.69
632 633 1.392589 AGCTGTGGATTTAATGGCGG 58.607 50.000 0.00 0.00 0.00 6.13
633 634 0.249031 GCTGTGGATTTAATGGCGGC 60.249 55.000 0.00 0.00 0.00 6.53
634 635 0.029300 CTGTGGATTTAATGGCGGCG 59.971 55.000 0.51 0.51 0.00 6.46
635 636 0.678366 TGTGGATTTAATGGCGGCGT 60.678 50.000 9.37 0.00 0.00 5.68
636 637 0.028902 GTGGATTTAATGGCGGCGTC 59.971 55.000 3.62 3.62 0.00 5.19
637 638 1.278637 GGATTTAATGGCGGCGTCG 59.721 57.895 4.29 4.29 39.81 5.12
638 639 1.278637 GATTTAATGGCGGCGTCGG 59.721 57.895 13.05 0.00 36.79 4.79
683 684 3.905331 GGAGGCCTTCCCCTAAAAG 57.095 57.895 6.77 0.00 40.37 2.27
684 685 0.259065 GGAGGCCTTCCCCTAAAAGG 59.741 60.000 6.77 0.00 45.12 3.11
685 686 1.000496 GAGGCCTTCCCCTAAAAGGT 59.000 55.000 6.77 0.00 44.34 3.50
686 687 0.704664 AGGCCTTCCCCTAAAAGGTG 59.295 55.000 0.00 0.00 44.34 4.00
687 688 0.970937 GGCCTTCCCCTAAAAGGTGC 60.971 60.000 0.00 0.00 44.34 5.01
688 689 0.251608 GCCTTCCCCTAAAAGGTGCA 60.252 55.000 4.01 0.00 44.34 4.57
689 690 1.545841 CCTTCCCCTAAAAGGTGCAC 58.454 55.000 8.80 8.80 38.79 4.57
690 691 1.203001 CCTTCCCCTAAAAGGTGCACA 60.203 52.381 20.43 0.00 38.79 4.57
691 692 2.557452 CCTTCCCCTAAAAGGTGCACAT 60.557 50.000 20.43 9.24 38.79 3.21
692 693 2.507407 TCCCCTAAAAGGTGCACATC 57.493 50.000 20.43 1.46 31.93 3.06
693 694 1.005450 TCCCCTAAAAGGTGCACATCC 59.995 52.381 20.43 0.48 31.93 3.51
694 695 1.272425 CCCCTAAAAGGTGCACATCCA 60.272 52.381 20.43 0.00 31.93 3.41
695 696 2.624029 CCCCTAAAAGGTGCACATCCAT 60.624 50.000 20.43 4.01 31.93 3.41
696 697 2.689983 CCCTAAAAGGTGCACATCCATC 59.310 50.000 20.43 0.00 31.93 3.51
697 698 2.689983 CCTAAAAGGTGCACATCCATCC 59.310 50.000 20.43 0.00 0.00 3.51
698 699 2.307496 AAAAGGTGCACATCCATCCA 57.693 45.000 20.43 0.00 0.00 3.41
699 700 2.307496 AAAGGTGCACATCCATCCAA 57.693 45.000 20.43 0.00 0.00 3.53
700 701 1.549203 AAGGTGCACATCCATCCAAC 58.451 50.000 20.43 0.00 0.00 3.77
701 702 0.700564 AGGTGCACATCCATCCAACT 59.299 50.000 20.43 0.00 0.00 3.16
702 703 1.098050 GGTGCACATCCATCCAACTC 58.902 55.000 20.43 0.00 0.00 3.01
703 704 1.340405 GGTGCACATCCATCCAACTCT 60.340 52.381 20.43 0.00 0.00 3.24
704 705 2.440409 GTGCACATCCATCCAACTCTT 58.560 47.619 13.17 0.00 0.00 2.85
705 706 2.821969 GTGCACATCCATCCAACTCTTT 59.178 45.455 13.17 0.00 0.00 2.52
706 707 4.009675 GTGCACATCCATCCAACTCTTTA 58.990 43.478 13.17 0.00 0.00 1.85
707 708 4.641989 GTGCACATCCATCCAACTCTTTAT 59.358 41.667 13.17 0.00 0.00 1.40
708 709 4.883585 TGCACATCCATCCAACTCTTTATC 59.116 41.667 0.00 0.00 0.00 1.75
709 710 4.276926 GCACATCCATCCAACTCTTTATCC 59.723 45.833 0.00 0.00 0.00 2.59
710 711 5.688807 CACATCCATCCAACTCTTTATCCT 58.311 41.667 0.00 0.00 0.00 3.24
711 712 5.530171 CACATCCATCCAACTCTTTATCCTG 59.470 44.000 0.00 0.00 0.00 3.86
712 713 4.156455 TCCATCCAACTCTTTATCCTGC 57.844 45.455 0.00 0.00 0.00 4.85
713 714 3.117888 TCCATCCAACTCTTTATCCTGCC 60.118 47.826 0.00 0.00 0.00 4.85
714 715 3.117738 CCATCCAACTCTTTATCCTGCCT 60.118 47.826 0.00 0.00 0.00 4.75
715 716 4.530875 CATCCAACTCTTTATCCTGCCTT 58.469 43.478 0.00 0.00 0.00 4.35
716 717 5.397899 CCATCCAACTCTTTATCCTGCCTTA 60.398 44.000 0.00 0.00 0.00 2.69
717 718 5.975988 TCCAACTCTTTATCCTGCCTTAT 57.024 39.130 0.00 0.00 0.00 1.73
718 719 6.327386 TCCAACTCTTTATCCTGCCTTATT 57.673 37.500 0.00 0.00 0.00 1.40
719 720 6.731467 TCCAACTCTTTATCCTGCCTTATTT 58.269 36.000 0.00 0.00 0.00 1.40
720 721 6.603201 TCCAACTCTTTATCCTGCCTTATTTG 59.397 38.462 0.00 0.00 0.00 2.32
721 722 6.378280 CCAACTCTTTATCCTGCCTTATTTGT 59.622 38.462 0.00 0.00 0.00 2.83
722 723 7.093771 CCAACTCTTTATCCTGCCTTATTTGTT 60.094 37.037 0.00 0.00 0.00 2.83
723 724 7.396540 ACTCTTTATCCTGCCTTATTTGTTG 57.603 36.000 0.00 0.00 0.00 3.33
724 725 6.378280 ACTCTTTATCCTGCCTTATTTGTTGG 59.622 38.462 0.00 0.00 0.00 3.77
725 726 5.127031 TCTTTATCCTGCCTTATTTGTTGGC 59.873 40.000 0.00 0.00 46.26 4.52
734 735 6.588348 GCCTTATTTGTTGGCATGAATTAC 57.412 37.500 0.00 0.00 45.46 1.89
735 736 5.523552 GCCTTATTTGTTGGCATGAATTACC 59.476 40.000 0.00 0.00 45.46 2.85
736 737 6.048509 CCTTATTTGTTGGCATGAATTACCC 58.951 40.000 0.00 0.00 0.00 3.69
737 738 3.584406 TTTGTTGGCATGAATTACCCG 57.416 42.857 0.00 0.00 0.00 5.28
738 739 2.208132 TGTTGGCATGAATTACCCGT 57.792 45.000 0.00 0.00 0.00 5.28
739 740 2.520069 TGTTGGCATGAATTACCCGTT 58.480 42.857 0.00 0.00 0.00 4.44
740 741 2.490115 TGTTGGCATGAATTACCCGTTC 59.510 45.455 0.00 0.00 0.00 3.95
741 742 1.757682 TGGCATGAATTACCCGTTCC 58.242 50.000 0.00 0.00 0.00 3.62
742 743 1.283613 TGGCATGAATTACCCGTTCCT 59.716 47.619 0.00 0.00 0.00 3.36
743 744 1.676006 GGCATGAATTACCCGTTCCTG 59.324 52.381 0.00 0.00 0.00 3.86
744 745 1.676006 GCATGAATTACCCGTTCCTGG 59.324 52.381 0.00 0.00 0.00 4.45
745 746 2.944094 GCATGAATTACCCGTTCCTGGT 60.944 50.000 0.00 0.00 39.97 4.00
746 747 3.352648 CATGAATTACCCGTTCCTGGTT 58.647 45.455 0.00 0.00 37.31 3.67
747 748 3.062122 TGAATTACCCGTTCCTGGTTC 57.938 47.619 0.00 0.00 37.31 3.62
748 749 2.290450 TGAATTACCCGTTCCTGGTTCC 60.290 50.000 0.00 0.00 37.31 3.62
749 750 0.622136 ATTACCCGTTCCTGGTTCCC 59.378 55.000 0.00 0.00 37.31 3.97
750 751 0.767446 TTACCCGTTCCTGGTTCCCA 60.767 55.000 0.00 0.00 37.31 4.37
751 752 0.548197 TACCCGTTCCTGGTTCCCAT 60.548 55.000 0.00 0.00 37.31 4.00
752 753 1.382629 CCCGTTCCTGGTTCCCATT 59.617 57.895 0.00 0.00 30.82 3.16
753 754 0.679960 CCCGTTCCTGGTTCCCATTC 60.680 60.000 0.00 0.00 30.82 2.67
754 755 0.679960 CCGTTCCTGGTTCCCATTCC 60.680 60.000 0.00 0.00 30.82 3.01
755 756 0.328258 CGTTCCTGGTTCCCATTCCT 59.672 55.000 0.00 0.00 30.82 3.36
756 757 1.839424 GTTCCTGGTTCCCATTCCTG 58.161 55.000 0.00 0.00 30.82 3.86
757 758 0.039618 TTCCTGGTTCCCATTCCTGC 59.960 55.000 0.00 0.00 30.82 4.85
758 759 1.380380 CCTGGTTCCCATTCCTGCC 60.380 63.158 0.00 0.00 30.82 4.85
759 760 1.693640 CTGGTTCCCATTCCTGCCT 59.306 57.895 0.00 0.00 30.82 4.75
760 761 0.918983 CTGGTTCCCATTCCTGCCTA 59.081 55.000 0.00 0.00 30.82 3.93
761 762 1.284785 CTGGTTCCCATTCCTGCCTAA 59.715 52.381 0.00 0.00 30.82 2.69
762 763 1.713647 TGGTTCCCATTCCTGCCTAAA 59.286 47.619 0.00 0.00 0.00 1.85
763 764 2.110899 TGGTTCCCATTCCTGCCTAAAA 59.889 45.455 0.00 0.00 0.00 1.52
764 765 2.760650 GGTTCCCATTCCTGCCTAAAAG 59.239 50.000 0.00 0.00 0.00 2.27
765 766 2.760650 GTTCCCATTCCTGCCTAAAAGG 59.239 50.000 0.00 0.00 38.80 3.11
766 767 2.000048 TCCCATTCCTGCCTAAAAGGT 59.000 47.619 0.00 0.00 37.80 3.50
942 943 6.002653 GGGGGAGTTATTGTCTATCTTTGT 57.997 41.667 0.00 0.00 0.00 2.83
998 999 1.151908 GGTGGTTTACCCTGTGGCA 59.848 57.895 0.00 0.00 44.15 4.92
1099 1100 3.809832 CCAATTCGGCAGTTCGATCTATT 59.190 43.478 0.00 0.00 39.03 1.73
1226 1227 2.493687 GGATACCTAGGCACCCAGAGAT 60.494 54.545 9.30 0.00 0.00 2.75
1589 1694 4.041762 GGGGCACGTGGAATCCCA 62.042 66.667 24.73 0.00 40.53 4.37
1934 2039 3.055094 GGATGAAACTAAGCAGAGGTCCA 60.055 47.826 0.00 0.00 0.00 4.02
1969 2074 4.736126 TGAAGAATCAGCGGATGAGTTA 57.264 40.909 0.00 0.00 42.53 2.24
1993 2098 1.367346 TAGGGGTGAAATGCCACTCA 58.633 50.000 0.00 0.00 39.36 3.41
2205 2412 1.878656 CGTCGAGAGGGAAACAGCCT 61.879 60.000 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.423538 GCATTTCCGTGCTAATCCAGTT 59.576 45.455 0.00 0.00 41.82 3.16
1 2 2.017049 GCATTTCCGTGCTAATCCAGT 58.983 47.619 0.00 0.00 41.82 4.00
77 78 1.550130 AAATCGCCTTCCCCGACAGA 61.550 55.000 0.00 0.00 37.56 3.41
125 126 1.613630 ACCGGAGTTCATCCCTGCT 60.614 57.895 9.46 0.00 46.50 4.24
128 129 1.995626 CCCACCGGAGTTCATCCCT 60.996 63.158 9.46 0.00 46.50 4.20
129 130 1.345715 ATCCCACCGGAGTTCATCCC 61.346 60.000 9.46 0.00 46.50 3.85
130 131 0.106894 GATCCCACCGGAGTTCATCC 59.893 60.000 9.46 0.00 43.12 3.51
131 132 0.106894 GGATCCCACCGGAGTTCATC 59.893 60.000 9.46 2.39 43.12 2.92
132 133 0.326618 AGGATCCCACCGGAGTTCAT 60.327 55.000 9.46 0.00 43.12 2.57
133 134 1.080354 AGGATCCCACCGGAGTTCA 59.920 57.895 9.46 0.00 43.12 3.18
134 135 1.522569 CAGGATCCCACCGGAGTTC 59.477 63.158 9.46 0.74 43.12 3.01
135 136 1.995626 CCAGGATCCCACCGGAGTT 60.996 63.158 9.46 0.00 43.12 3.01
136 137 2.365635 CCAGGATCCCACCGGAGT 60.366 66.667 9.46 0.00 43.12 3.85
137 138 3.866582 GCCAGGATCCCACCGGAG 61.867 72.222 9.46 0.00 43.12 4.63
140 141 3.521529 GATCGCCAGGATCCCACCG 62.522 68.421 8.55 8.65 44.86 4.94
141 142 2.427753 GATCGCCAGGATCCCACC 59.572 66.667 8.55 0.00 44.86 4.61
147 148 2.527875 GGAGGGGATCGCCAGGAT 60.528 66.667 28.74 9.75 38.35 3.24
148 149 4.880426 GGGAGGGGATCGCCAGGA 62.880 72.222 28.74 0.00 37.03 3.86
150 151 3.866582 GTGGGAGGGGATCGCCAG 61.867 72.222 28.74 0.00 40.09 4.85
153 154 4.222847 GTCGTGGGAGGGGATCGC 62.223 72.222 0.06 0.06 41.18 4.58
154 155 3.900892 CGTCGTGGGAGGGGATCG 61.901 72.222 0.00 0.00 0.00 3.69
155 156 3.537874 CCGTCGTGGGAGGGGATC 61.538 72.222 0.00 0.00 43.08 3.36
165 166 2.815211 CATCAGGCCACCGTCGTG 60.815 66.667 5.01 0.00 39.91 4.35
166 167 2.879233 AACATCAGGCCACCGTCGT 61.879 57.895 5.01 0.00 0.00 4.34
167 168 2.047274 AACATCAGGCCACCGTCG 60.047 61.111 5.01 0.00 0.00 5.12
168 169 1.003839 TCAACATCAGGCCACCGTC 60.004 57.895 5.01 0.00 0.00 4.79
169 170 1.003355 CTCAACATCAGGCCACCGT 60.003 57.895 5.01 0.00 0.00 4.83
170 171 2.401766 GCTCAACATCAGGCCACCG 61.402 63.158 5.01 0.00 0.00 4.94
171 172 2.048603 GGCTCAACATCAGGCCACC 61.049 63.158 5.01 0.00 43.59 4.61
172 173 0.610232 AAGGCTCAACATCAGGCCAC 60.610 55.000 5.01 0.00 46.23 5.01
173 174 0.609957 CAAGGCTCAACATCAGGCCA 60.610 55.000 5.01 0.00 46.23 5.36
174 175 0.322816 TCAAGGCTCAACATCAGGCC 60.323 55.000 0.00 0.00 44.38 5.19
175 176 1.093159 CTCAAGGCTCAACATCAGGC 58.907 55.000 0.00 0.00 36.69 4.85
176 177 1.681166 CCCTCAAGGCTCAACATCAGG 60.681 57.143 0.00 0.00 0.00 3.86
177 178 1.681166 CCCCTCAAGGCTCAACATCAG 60.681 57.143 0.00 0.00 0.00 2.90
178 179 0.329261 CCCCTCAAGGCTCAACATCA 59.671 55.000 0.00 0.00 0.00 3.07
179 180 0.329596 ACCCCTCAAGGCTCAACATC 59.670 55.000 0.00 0.00 0.00 3.06
180 181 0.779997 AACCCCTCAAGGCTCAACAT 59.220 50.000 0.00 0.00 0.00 2.71
181 182 0.110486 GAACCCCTCAAGGCTCAACA 59.890 55.000 0.00 0.00 0.00 3.33
182 183 0.955919 CGAACCCCTCAAGGCTCAAC 60.956 60.000 0.00 0.00 0.00 3.18
183 184 1.374947 CGAACCCCTCAAGGCTCAA 59.625 57.895 0.00 0.00 0.00 3.02
184 185 3.068881 CGAACCCCTCAAGGCTCA 58.931 61.111 0.00 0.00 0.00 4.26
185 186 2.436824 GCGAACCCCTCAAGGCTC 60.437 66.667 0.00 0.00 0.00 4.70
186 187 4.035102 GGCGAACCCCTCAAGGCT 62.035 66.667 0.00 0.00 0.00 4.58
188 189 3.952628 GACGGCGAACCCCTCAAGG 62.953 68.421 16.62 0.00 0.00 3.61
189 190 2.434359 GACGGCGAACCCCTCAAG 60.434 66.667 16.62 0.00 0.00 3.02
190 191 4.011517 GGACGGCGAACCCCTCAA 62.012 66.667 16.62 0.00 0.00 3.02
192 193 4.452733 CAGGACGGCGAACCCCTC 62.453 72.222 16.62 0.00 0.00 4.30
194 195 3.952628 CTTCAGGACGGCGAACCCC 62.953 68.421 16.62 9.11 0.00 4.95
195 196 2.434359 CTTCAGGACGGCGAACCC 60.434 66.667 16.62 11.86 0.00 4.11
196 197 1.289800 GAACTTCAGGACGGCGAACC 61.290 60.000 16.62 16.74 0.00 3.62
197 198 0.319641 AGAACTTCAGGACGGCGAAC 60.320 55.000 16.62 5.56 0.00 3.95
198 199 0.038526 GAGAACTTCAGGACGGCGAA 60.039 55.000 16.62 0.00 0.00 4.70
199 200 1.585006 GAGAACTTCAGGACGGCGA 59.415 57.895 16.62 0.00 0.00 5.54
200 201 1.446272 GGAGAACTTCAGGACGGCG 60.446 63.158 4.80 4.80 0.00 6.46
201 202 1.079057 GGGAGAACTTCAGGACGGC 60.079 63.158 0.00 0.00 0.00 5.68
202 203 0.247736 CTGGGAGAACTTCAGGACGG 59.752 60.000 0.00 0.00 0.00 4.79
203 204 0.390472 GCTGGGAGAACTTCAGGACG 60.390 60.000 0.00 0.00 0.00 4.79
204 205 0.390472 CGCTGGGAGAACTTCAGGAC 60.390 60.000 0.00 0.00 0.00 3.85
205 206 1.544825 CCGCTGGGAGAACTTCAGGA 61.545 60.000 0.00 0.00 34.06 3.86
206 207 1.078848 CCGCTGGGAGAACTTCAGG 60.079 63.158 0.00 0.00 34.06 3.86
207 208 4.606071 CCGCTGGGAGAACTTCAG 57.394 61.111 0.00 0.00 34.06 3.02
228 229 3.211963 ATCAAATCCGCGGCAGGC 61.212 61.111 23.51 0.00 38.69 4.85
229 230 1.168407 ATCATCAAATCCGCGGCAGG 61.168 55.000 23.51 10.05 0.00 4.85
230 231 0.664761 AATCATCAAATCCGCGGCAG 59.335 50.000 23.51 10.05 0.00 4.85
231 232 0.662619 GAATCATCAAATCCGCGGCA 59.337 50.000 23.51 10.36 0.00 5.69
232 233 0.040067 GGAATCATCAAATCCGCGGC 60.040 55.000 23.51 0.50 0.00 6.53
237 238 3.004106 CAGAAGGCGGAATCATCAAATCC 59.996 47.826 0.00 0.00 0.00 3.01
238 239 3.879295 TCAGAAGGCGGAATCATCAAATC 59.121 43.478 0.00 0.00 0.00 2.17
239 240 3.889815 TCAGAAGGCGGAATCATCAAAT 58.110 40.909 0.00 0.00 0.00 2.32
240 241 3.348647 TCAGAAGGCGGAATCATCAAA 57.651 42.857 0.00 0.00 0.00 2.69
241 242 3.348647 TTCAGAAGGCGGAATCATCAA 57.651 42.857 0.00 0.00 0.00 2.57
242 243 3.565764 ATTCAGAAGGCGGAATCATCA 57.434 42.857 0.00 0.00 34.48 3.07
243 244 3.549625 GCAATTCAGAAGGCGGAATCATC 60.550 47.826 0.00 0.00 37.85 2.92
244 245 2.360165 GCAATTCAGAAGGCGGAATCAT 59.640 45.455 0.00 0.00 37.85 2.45
245 246 1.745087 GCAATTCAGAAGGCGGAATCA 59.255 47.619 0.00 0.00 37.85 2.57
246 247 1.066152 GGCAATTCAGAAGGCGGAATC 59.934 52.381 4.08 0.00 37.85 2.52
247 248 1.106285 GGCAATTCAGAAGGCGGAAT 58.894 50.000 4.08 0.00 40.01 3.01
248 249 0.965363 GGGCAATTCAGAAGGCGGAA 60.965 55.000 4.08 0.00 32.86 4.30
249 250 1.378514 GGGCAATTCAGAAGGCGGA 60.379 57.895 4.08 0.00 0.00 5.54
250 251 1.660560 CTGGGCAATTCAGAAGGCGG 61.661 60.000 4.08 0.00 34.36 6.13
251 252 0.677731 TCTGGGCAATTCAGAAGGCG 60.678 55.000 4.08 0.00 38.20 5.52
252 253 1.549203 TTCTGGGCAATTCAGAAGGC 58.451 50.000 4.42 1.73 43.70 4.35
255 256 4.330250 CTTCTCTTCTGGGCAATTCAGAA 58.670 43.478 7.59 7.59 45.57 3.02
256 257 3.871463 GCTTCTCTTCTGGGCAATTCAGA 60.871 47.826 0.00 0.00 39.24 3.27
257 258 2.422832 GCTTCTCTTCTGGGCAATTCAG 59.577 50.000 0.00 0.00 0.00 3.02
258 259 2.040813 AGCTTCTCTTCTGGGCAATTCA 59.959 45.455 0.00 0.00 0.00 2.57
259 260 2.682352 GAGCTTCTCTTCTGGGCAATTC 59.318 50.000 0.00 0.00 0.00 2.17
260 261 2.620108 GGAGCTTCTCTTCTGGGCAATT 60.620 50.000 0.00 0.00 0.00 2.32
261 262 1.064832 GGAGCTTCTCTTCTGGGCAAT 60.065 52.381 0.00 0.00 0.00 3.56
262 263 0.326264 GGAGCTTCTCTTCTGGGCAA 59.674 55.000 0.00 0.00 0.00 4.52
263 264 0.837691 TGGAGCTTCTCTTCTGGGCA 60.838 55.000 0.00 0.00 0.00 5.36
264 265 0.392327 GTGGAGCTTCTCTTCTGGGC 60.392 60.000 0.00 0.00 0.00 5.36
265 266 0.979665 TGTGGAGCTTCTCTTCTGGG 59.020 55.000 0.00 0.00 0.00 4.45
266 267 2.419851 GGATGTGGAGCTTCTCTTCTGG 60.420 54.545 9.19 0.00 0.00 3.86
267 268 2.500910 AGGATGTGGAGCTTCTCTTCTG 59.499 50.000 9.19 0.00 0.00 3.02
268 269 2.765699 GAGGATGTGGAGCTTCTCTTCT 59.234 50.000 9.19 0.00 0.00 2.85
269 270 2.481104 CGAGGATGTGGAGCTTCTCTTC 60.481 54.545 0.00 0.00 0.00 2.87
270 271 1.480137 CGAGGATGTGGAGCTTCTCTT 59.520 52.381 0.00 0.00 0.00 2.85
271 272 1.110442 CGAGGATGTGGAGCTTCTCT 58.890 55.000 0.00 0.00 0.00 3.10
272 273 0.529555 GCGAGGATGTGGAGCTTCTC 60.530 60.000 0.00 0.00 0.00 2.87
273 274 1.260538 TGCGAGGATGTGGAGCTTCT 61.261 55.000 0.00 0.00 0.00 2.85
274 275 0.391661 TTGCGAGGATGTGGAGCTTC 60.392 55.000 0.00 0.00 0.00 3.86
275 276 0.674895 GTTGCGAGGATGTGGAGCTT 60.675 55.000 0.00 0.00 0.00 3.74
276 277 1.078848 GTTGCGAGGATGTGGAGCT 60.079 57.895 0.00 0.00 0.00 4.09
277 278 2.109126 GGTTGCGAGGATGTGGAGC 61.109 63.158 0.00 0.00 0.00 4.70
278 279 1.811266 CGGTTGCGAGGATGTGGAG 60.811 63.158 0.00 0.00 0.00 3.86
279 280 2.264480 CGGTTGCGAGGATGTGGA 59.736 61.111 0.00 0.00 0.00 4.02
280 281 2.047274 ACGGTTGCGAGGATGTGG 60.047 61.111 0.00 0.00 0.00 4.17
281 282 2.444624 CGACGGTTGCGAGGATGTG 61.445 63.158 0.00 0.00 0.00 3.21
282 283 2.126071 CGACGGTTGCGAGGATGT 60.126 61.111 0.00 0.00 0.00 3.06
283 284 2.126071 ACGACGGTTGCGAGGATG 60.126 61.111 0.00 0.00 0.00 3.51
284 285 2.181021 GACGACGGTTGCGAGGAT 59.819 61.111 0.00 0.00 0.00 3.24
285 286 2.974489 GAGACGACGGTTGCGAGGA 61.974 63.158 0.00 0.00 0.00 3.71
286 287 2.504244 GAGACGACGGTTGCGAGG 60.504 66.667 0.00 0.00 0.00 4.63
287 288 2.504244 GGAGACGACGGTTGCGAG 60.504 66.667 0.00 0.00 0.00 5.03
299 300 3.621394 GCGCGCTTCATCGGAGAC 61.621 66.667 26.67 0.00 42.51 3.36
319 320 4.755614 ACGCGAACTCCGTCGAGC 62.756 66.667 15.93 0.00 43.56 5.03
320 321 2.870161 CACGCGAACTCCGTCGAG 60.870 66.667 15.93 0.00 43.86 4.04
321 322 4.394078 CCACGCGAACTCCGTCGA 62.394 66.667 15.93 0.00 43.86 4.20
333 334 3.044305 GCATATCCTCCGCCACGC 61.044 66.667 0.00 0.00 0.00 5.34
334 335 1.004560 ATGCATATCCTCCGCCACG 60.005 57.895 0.00 0.00 0.00 4.94
335 336 0.250467 ACATGCATATCCTCCGCCAC 60.250 55.000 0.00 0.00 0.00 5.01
336 337 0.250424 CACATGCATATCCTCCGCCA 60.250 55.000 0.00 0.00 0.00 5.69
337 338 0.957395 CCACATGCATATCCTCCGCC 60.957 60.000 0.00 0.00 0.00 6.13
338 339 0.035317 TCCACATGCATATCCTCCGC 59.965 55.000 0.00 0.00 0.00 5.54
339 340 2.235650 AGATCCACATGCATATCCTCCG 59.764 50.000 0.00 0.00 0.00 4.63
340 341 3.370315 GGAGATCCACATGCATATCCTCC 60.370 52.174 0.00 6.45 35.64 4.30
341 342 3.370315 GGGAGATCCACATGCATATCCTC 60.370 52.174 0.00 0.84 37.91 3.71
342 343 2.575279 GGGAGATCCACATGCATATCCT 59.425 50.000 0.00 0.00 37.91 3.24
343 344 2.356535 GGGGAGATCCACATGCATATCC 60.357 54.545 0.00 0.00 39.88 2.59
344 345 2.356535 GGGGGAGATCCACATGCATATC 60.357 54.545 0.00 0.00 42.67 1.63
345 346 1.637553 GGGGGAGATCCACATGCATAT 59.362 52.381 0.00 0.00 42.67 1.78
346 347 1.067295 GGGGGAGATCCACATGCATA 58.933 55.000 0.00 0.00 42.67 3.14
347 348 1.849116 GGGGGAGATCCACATGCAT 59.151 57.895 3.02 0.00 42.67 3.96
348 349 3.334604 GGGGGAGATCCACATGCA 58.665 61.111 3.02 0.00 42.67 3.96
377 378 4.162690 ATGGAGCGCTTCCCCGAC 62.163 66.667 14.57 0.00 46.19 4.79
378 379 3.849951 GATGGAGCGCTTCCCCGA 61.850 66.667 14.57 0.00 46.19 5.14
379 380 4.161295 TGATGGAGCGCTTCCCCG 62.161 66.667 14.57 0.00 46.19 5.73
380 381 2.514824 GTGATGGAGCGCTTCCCC 60.515 66.667 14.57 10.24 46.19 4.81
381 382 2.514824 GGTGATGGAGCGCTTCCC 60.515 66.667 14.57 11.07 46.19 3.97
382 383 2.109126 GTGGTGATGGAGCGCTTCC 61.109 63.158 14.57 15.56 46.98 3.46
383 384 2.109126 GGTGGTGATGGAGCGCTTC 61.109 63.158 13.26 11.25 32.88 3.86
384 385 2.045926 GGTGGTGATGGAGCGCTT 60.046 61.111 13.26 0.00 32.88 4.68
385 386 4.101448 GGGTGGTGATGGAGCGCT 62.101 66.667 11.27 11.27 32.88 5.92
389 390 3.391665 GAGGCGGGTGGTGATGGAG 62.392 68.421 0.00 0.00 0.00 3.86
390 391 3.399181 GAGGCGGGTGGTGATGGA 61.399 66.667 0.00 0.00 0.00 3.41
391 392 2.947938 GATGAGGCGGGTGGTGATGG 62.948 65.000 0.00 0.00 0.00 3.51
392 393 1.524621 GATGAGGCGGGTGGTGATG 60.525 63.158 0.00 0.00 0.00 3.07
393 394 1.690219 GAGATGAGGCGGGTGGTGAT 61.690 60.000 0.00 0.00 0.00 3.06
394 395 2.284625 AGATGAGGCGGGTGGTGA 60.285 61.111 0.00 0.00 0.00 4.02
395 396 2.187946 GAGATGAGGCGGGTGGTG 59.812 66.667 0.00 0.00 0.00 4.17
396 397 2.039624 AGAGATGAGGCGGGTGGT 59.960 61.111 0.00 0.00 0.00 4.16
397 398 2.818132 GAGAGATGAGGCGGGTGG 59.182 66.667 0.00 0.00 0.00 4.61
398 399 2.415010 CGAGAGATGAGGCGGGTG 59.585 66.667 0.00 0.00 0.00 4.61
399 400 2.835431 CCGAGAGATGAGGCGGGT 60.835 66.667 0.00 0.00 40.08 5.28
400 401 4.292178 GCCGAGAGATGAGGCGGG 62.292 72.222 0.00 0.00 43.73 6.13
425 426 3.937433 GATCGATCCGCTCTCGCCG 62.937 68.421 14.76 0.00 36.11 6.46
426 427 2.126657 GATCGATCCGCTCTCGCC 60.127 66.667 14.76 0.00 36.11 5.54
427 428 1.154301 GAGATCGATCCGCTCTCGC 60.154 63.158 21.66 0.00 38.86 5.03
429 430 1.499949 CCGAGATCGATCCGCTCTC 59.500 63.158 21.66 11.95 43.01 3.20
430 431 1.969064 CCCGAGATCGATCCGCTCT 60.969 63.158 21.66 3.16 43.02 4.09
431 432 2.563942 CCCGAGATCGATCCGCTC 59.436 66.667 21.66 11.91 43.02 5.03
432 433 3.675563 GCCCGAGATCGATCCGCT 61.676 66.667 21.66 3.34 43.02 5.52
433 434 3.905705 CTGCCCGAGATCGATCCGC 62.906 68.421 21.66 17.30 43.02 5.54
434 435 2.256764 CTGCCCGAGATCGATCCG 59.743 66.667 21.66 21.78 43.02 4.18
435 436 2.048690 GCTGCCCGAGATCGATCC 60.049 66.667 21.66 12.11 43.02 3.36
436 437 2.429907 CGCTGCCCGAGATCGATC 60.430 66.667 17.91 17.91 43.02 3.69
437 438 3.983494 CCGCTGCCCGAGATCGAT 61.983 66.667 0.00 0.00 43.02 3.59
459 460 2.032681 ACTTCCGCCTCCAGTTGC 59.967 61.111 0.00 0.00 0.00 4.17
460 461 2.328099 GCACTTCCGCCTCCAGTTG 61.328 63.158 0.00 0.00 0.00 3.16
461 462 2.032681 GCACTTCCGCCTCCAGTT 59.967 61.111 0.00 0.00 0.00 3.16
495 496 4.025401 GCTTGTTCCGGTGGCACG 62.025 66.667 12.17 7.01 0.00 5.34
496 497 3.670377 GGCTTGTTCCGGTGGCAC 61.670 66.667 9.70 9.70 0.00 5.01
504 505 3.733960 GGTTCGCCGGCTTGTTCC 61.734 66.667 26.68 15.24 0.00 3.62
505 506 3.733960 GGGTTCGCCGGCTTGTTC 61.734 66.667 26.68 9.90 38.45 3.18
534 535 1.878522 GTATGGCTGGAGCGTGACG 60.879 63.158 0.00 0.00 43.26 4.35
535 536 1.878522 CGTATGGCTGGAGCGTGAC 60.879 63.158 0.00 0.00 43.26 3.67
536 537 2.279502 GACGTATGGCTGGAGCGTGA 62.280 60.000 0.00 0.00 43.26 4.35
537 538 1.878522 GACGTATGGCTGGAGCGTG 60.879 63.158 0.00 0.00 43.26 5.34
538 539 1.605058 AAGACGTATGGCTGGAGCGT 61.605 55.000 0.00 0.00 43.26 5.07
539 540 0.872021 GAAGACGTATGGCTGGAGCG 60.872 60.000 0.00 0.00 43.26 5.03
540 541 0.461961 AGAAGACGTATGGCTGGAGC 59.538 55.000 0.00 0.00 41.14 4.70
541 542 1.751351 TGAGAAGACGTATGGCTGGAG 59.249 52.381 0.00 0.00 0.00 3.86
542 543 1.847328 TGAGAAGACGTATGGCTGGA 58.153 50.000 0.00 0.00 0.00 3.86
543 544 2.093973 AGTTGAGAAGACGTATGGCTGG 60.094 50.000 0.00 0.00 0.00 4.85
544 545 2.926200 CAGTTGAGAAGACGTATGGCTG 59.074 50.000 0.00 0.00 0.00 4.85
545 546 2.675317 GCAGTTGAGAAGACGTATGGCT 60.675 50.000 0.00 0.00 0.00 4.75
546 547 1.661112 GCAGTTGAGAAGACGTATGGC 59.339 52.381 0.00 0.00 0.00 4.40
547 548 1.920574 CGCAGTTGAGAAGACGTATGG 59.079 52.381 0.00 0.00 0.00 2.74
548 549 1.920574 CCGCAGTTGAGAAGACGTATG 59.079 52.381 0.00 0.00 0.00 2.39
549 550 1.816835 TCCGCAGTTGAGAAGACGTAT 59.183 47.619 0.00 0.00 0.00 3.06
550 551 1.241165 TCCGCAGTTGAGAAGACGTA 58.759 50.000 0.00 0.00 0.00 3.57
551 552 0.603569 ATCCGCAGTTGAGAAGACGT 59.396 50.000 0.00 0.00 0.00 4.34
552 553 1.714794 AATCCGCAGTTGAGAAGACG 58.285 50.000 0.00 0.00 0.00 4.18
553 554 2.160417 CCAAATCCGCAGTTGAGAAGAC 59.840 50.000 0.00 0.00 28.42 3.01
554 555 2.038426 TCCAAATCCGCAGTTGAGAAGA 59.962 45.455 0.00 0.00 28.42 2.87
555 556 2.417933 CTCCAAATCCGCAGTTGAGAAG 59.582 50.000 0.00 0.00 28.42 2.85
556 557 2.426522 CTCCAAATCCGCAGTTGAGAA 58.573 47.619 0.00 0.00 28.42 2.87
557 558 1.945819 GCTCCAAATCCGCAGTTGAGA 60.946 52.381 0.00 0.00 28.42 3.27
558 559 0.449388 GCTCCAAATCCGCAGTTGAG 59.551 55.000 0.00 0.00 28.42 3.02
559 560 0.250684 TGCTCCAAATCCGCAGTTGA 60.251 50.000 0.00 0.00 28.42 3.18
560 561 0.169672 CTGCTCCAAATCCGCAGTTG 59.830 55.000 0.00 0.00 44.50 3.16
561 562 2.559785 CTGCTCCAAATCCGCAGTT 58.440 52.632 0.00 0.00 44.50 3.16
562 563 4.308526 CTGCTCCAAATCCGCAGT 57.691 55.556 0.00 0.00 44.50 4.40
564 565 2.045045 CCCTGCTCCAAATCCGCA 60.045 61.111 0.00 0.00 0.00 5.69
565 566 1.821332 CTCCCTGCTCCAAATCCGC 60.821 63.158 0.00 0.00 0.00 5.54
566 567 0.179062 CTCTCCCTGCTCCAAATCCG 60.179 60.000 0.00 0.00 0.00 4.18
567 568 0.465278 GCTCTCCCTGCTCCAAATCC 60.465 60.000 0.00 0.00 0.00 3.01
568 569 0.545646 AGCTCTCCCTGCTCCAAATC 59.454 55.000 0.00 0.00 35.67 2.17
569 570 2.707352 AGCTCTCCCTGCTCCAAAT 58.293 52.632 0.00 0.00 35.67 2.32
570 571 4.239991 AGCTCTCCCTGCTCCAAA 57.760 55.556 0.00 0.00 35.67 3.28
575 576 1.381056 ACATCGAGCTCTCCCTGCT 60.381 57.895 12.85 0.00 44.24 4.24
576 577 1.227205 CACATCGAGCTCTCCCTGC 60.227 63.158 12.85 0.00 0.00 4.85
577 578 1.326213 ACCACATCGAGCTCTCCCTG 61.326 60.000 12.85 6.19 0.00 4.45
578 579 1.000993 ACCACATCGAGCTCTCCCT 59.999 57.895 12.85 0.00 0.00 4.20
579 580 1.142748 CACCACATCGAGCTCTCCC 59.857 63.158 12.85 0.00 0.00 4.30
580 581 0.459237 CACACCACATCGAGCTCTCC 60.459 60.000 12.85 0.00 0.00 3.71
581 582 0.459237 CCACACCACATCGAGCTCTC 60.459 60.000 12.85 0.00 0.00 3.20
582 583 1.593787 CCACACCACATCGAGCTCT 59.406 57.895 12.85 0.00 0.00 4.09
583 584 1.448540 CCCACACCACATCGAGCTC 60.449 63.158 2.73 2.73 0.00 4.09
584 585 2.665000 CCCACACCACATCGAGCT 59.335 61.111 0.00 0.00 0.00 4.09
585 586 2.436646 CCCCACACCACATCGAGC 60.437 66.667 0.00 0.00 0.00 5.03
586 587 2.268920 CCCCCACACCACATCGAG 59.731 66.667 0.00 0.00 0.00 4.04
587 588 2.528127 ACCCCCACACCACATCGA 60.528 61.111 0.00 0.00 0.00 3.59
588 589 2.359850 CACCCCCACACCACATCG 60.360 66.667 0.00 0.00 0.00 3.84
589 590 2.035626 CCACCCCCACACCACATC 59.964 66.667 0.00 0.00 0.00 3.06
590 591 3.589542 CCCACCCCCACACCACAT 61.590 66.667 0.00 0.00 0.00 3.21
592 593 4.596585 CACCCACCCCCACACCAC 62.597 72.222 0.00 0.00 0.00 4.16
596 597 4.865228 TTCCCACCCACCCCCACA 62.865 66.667 0.00 0.00 0.00 4.17
597 598 3.979497 CTTCCCACCCACCCCCAC 61.979 72.222 0.00 0.00 0.00 4.61
600 601 4.366684 CAGCTTCCCACCCACCCC 62.367 72.222 0.00 0.00 0.00 4.95
601 602 3.580319 ACAGCTTCCCACCCACCC 61.580 66.667 0.00 0.00 0.00 4.61
602 603 2.282462 CACAGCTTCCCACCCACC 60.282 66.667 0.00 0.00 0.00 4.61
603 604 2.142292 ATCCACAGCTTCCCACCCAC 62.142 60.000 0.00 0.00 0.00 4.61
604 605 1.434513 AATCCACAGCTTCCCACCCA 61.435 55.000 0.00 0.00 0.00 4.51
605 606 0.251787 AAATCCACAGCTTCCCACCC 60.252 55.000 0.00 0.00 0.00 4.61
606 607 2.507407 TAAATCCACAGCTTCCCACC 57.493 50.000 0.00 0.00 0.00 4.61
607 608 3.131046 CCATTAAATCCACAGCTTCCCAC 59.869 47.826 0.00 0.00 0.00 4.61
608 609 3.364549 CCATTAAATCCACAGCTTCCCA 58.635 45.455 0.00 0.00 0.00 4.37
609 610 2.101415 GCCATTAAATCCACAGCTTCCC 59.899 50.000 0.00 0.00 0.00 3.97
610 611 2.223572 CGCCATTAAATCCACAGCTTCC 60.224 50.000 0.00 0.00 0.00 3.46
611 612 2.223572 CCGCCATTAAATCCACAGCTTC 60.224 50.000 0.00 0.00 0.00 3.86
612 613 1.750778 CCGCCATTAAATCCACAGCTT 59.249 47.619 0.00 0.00 0.00 3.74
613 614 1.392589 CCGCCATTAAATCCACAGCT 58.607 50.000 0.00 0.00 0.00 4.24
614 615 0.249031 GCCGCCATTAAATCCACAGC 60.249 55.000 0.00 0.00 0.00 4.40
615 616 0.029300 CGCCGCCATTAAATCCACAG 59.971 55.000 0.00 0.00 0.00 3.66
616 617 0.678366 ACGCCGCCATTAAATCCACA 60.678 50.000 0.00 0.00 0.00 4.17
617 618 0.028902 GACGCCGCCATTAAATCCAC 59.971 55.000 0.00 0.00 0.00 4.02
618 619 1.433053 CGACGCCGCCATTAAATCCA 61.433 55.000 0.00 0.00 0.00 3.41
619 620 1.278637 CGACGCCGCCATTAAATCC 59.721 57.895 0.00 0.00 0.00 3.01
620 621 1.278637 CCGACGCCGCCATTAAATC 59.721 57.895 0.00 0.00 0.00 2.17
621 622 2.830285 GCCGACGCCGCCATTAAAT 61.830 57.895 0.00 0.00 0.00 1.40
622 623 3.501548 GCCGACGCCGCCATTAAA 61.502 61.111 0.00 0.00 0.00 1.52
665 666 0.259065 CCTTTTAGGGGAAGGCCTCC 59.741 60.000 5.23 9.41 44.54 4.30
666 667 1.000496 ACCTTTTAGGGGAAGGCCTC 59.000 55.000 5.23 0.00 46.10 4.70
667 668 0.704664 CACCTTTTAGGGGAAGGCCT 59.295 55.000 0.00 0.00 43.10 5.19
668 669 0.970937 GCACCTTTTAGGGGAAGGCC 60.971 60.000 0.00 0.00 43.10 5.19
669 670 0.251608 TGCACCTTTTAGGGGAAGGC 60.252 55.000 0.00 0.00 43.10 4.35
670 671 1.203001 TGTGCACCTTTTAGGGGAAGG 60.203 52.381 15.69 1.52 43.10 3.46
671 672 2.286365 TGTGCACCTTTTAGGGGAAG 57.714 50.000 15.69 0.00 43.10 3.46
672 673 2.556559 GGATGTGCACCTTTTAGGGGAA 60.557 50.000 15.69 0.00 43.10 3.97
673 674 1.005450 GGATGTGCACCTTTTAGGGGA 59.995 52.381 15.69 0.00 43.10 4.81
674 675 1.272425 TGGATGTGCACCTTTTAGGGG 60.272 52.381 15.69 0.00 43.37 4.79
675 676 2.214376 TGGATGTGCACCTTTTAGGG 57.786 50.000 15.69 0.00 40.58 3.53
676 677 2.689983 GGATGGATGTGCACCTTTTAGG 59.310 50.000 15.69 0.00 42.49 2.69
677 678 3.355378 TGGATGGATGTGCACCTTTTAG 58.645 45.455 15.69 0.00 0.00 1.85
678 679 3.448093 TGGATGGATGTGCACCTTTTA 57.552 42.857 15.69 0.00 0.00 1.52
679 680 2.299867 GTTGGATGGATGTGCACCTTTT 59.700 45.455 15.69 0.00 0.00 2.27
680 681 1.895131 GTTGGATGGATGTGCACCTTT 59.105 47.619 15.69 0.00 0.00 3.11
681 682 1.076024 AGTTGGATGGATGTGCACCTT 59.924 47.619 15.69 0.93 0.00 3.50
682 683 0.700564 AGTTGGATGGATGTGCACCT 59.299 50.000 15.69 3.77 0.00 4.00
683 684 1.098050 GAGTTGGATGGATGTGCACC 58.902 55.000 15.69 0.00 0.00 5.01
684 685 2.119801 AGAGTTGGATGGATGTGCAC 57.880 50.000 10.75 10.75 0.00 4.57
685 686 2.885135 AAGAGTTGGATGGATGTGCA 57.115 45.000 0.00 0.00 0.00 4.57
686 687 4.276926 GGATAAAGAGTTGGATGGATGTGC 59.723 45.833 0.00 0.00 0.00 4.57
687 688 5.530171 CAGGATAAAGAGTTGGATGGATGTG 59.470 44.000 0.00 0.00 0.00 3.21
688 689 5.688807 CAGGATAAAGAGTTGGATGGATGT 58.311 41.667 0.00 0.00 0.00 3.06
689 690 4.518211 GCAGGATAAAGAGTTGGATGGATG 59.482 45.833 0.00 0.00 0.00 3.51
690 691 4.446889 GGCAGGATAAAGAGTTGGATGGAT 60.447 45.833 0.00 0.00 0.00 3.41
691 692 3.117888 GGCAGGATAAAGAGTTGGATGGA 60.118 47.826 0.00 0.00 0.00 3.41
692 693 3.117738 AGGCAGGATAAAGAGTTGGATGG 60.118 47.826 0.00 0.00 0.00 3.51
693 694 4.162040 AGGCAGGATAAAGAGTTGGATG 57.838 45.455 0.00 0.00 0.00 3.51
694 695 4.870021 AAGGCAGGATAAAGAGTTGGAT 57.130 40.909 0.00 0.00 0.00 3.41
695 696 5.975988 ATAAGGCAGGATAAAGAGTTGGA 57.024 39.130 0.00 0.00 0.00 3.53
696 697 6.378280 ACAAATAAGGCAGGATAAAGAGTTGG 59.622 38.462 0.00 0.00 0.00 3.77
697 698 7.396540 ACAAATAAGGCAGGATAAAGAGTTG 57.603 36.000 0.00 0.00 0.00 3.16
698 699 7.093771 CCAACAAATAAGGCAGGATAAAGAGTT 60.094 37.037 0.00 0.00 0.00 3.01
699 700 6.378280 CCAACAAATAAGGCAGGATAAAGAGT 59.622 38.462 0.00 0.00 0.00 3.24
700 701 6.799512 CCAACAAATAAGGCAGGATAAAGAG 58.200 40.000 0.00 0.00 0.00 2.85
701 702 6.773976 CCAACAAATAAGGCAGGATAAAGA 57.226 37.500 0.00 0.00 0.00 2.52
712 713 6.048509 GGGTAATTCATGCCAACAAATAAGG 58.951 40.000 0.00 0.00 35.05 2.69
713 714 5.748152 CGGGTAATTCATGCCAACAAATAAG 59.252 40.000 0.00 0.00 35.05 1.73
714 715 5.186021 ACGGGTAATTCATGCCAACAAATAA 59.814 36.000 0.00 0.00 35.05 1.40
715 716 4.707448 ACGGGTAATTCATGCCAACAAATA 59.293 37.500 0.00 0.00 35.05 1.40
716 717 3.513515 ACGGGTAATTCATGCCAACAAAT 59.486 39.130 0.00 0.00 35.05 2.32
717 718 2.894126 ACGGGTAATTCATGCCAACAAA 59.106 40.909 0.00 0.00 35.05 2.83
718 719 2.520069 ACGGGTAATTCATGCCAACAA 58.480 42.857 0.00 0.00 35.05 2.83
719 720 2.208132 ACGGGTAATTCATGCCAACA 57.792 45.000 0.00 0.00 35.05 3.33
720 721 2.159296 GGAACGGGTAATTCATGCCAAC 60.159 50.000 0.00 0.00 35.05 3.77
721 722 2.096248 GGAACGGGTAATTCATGCCAA 58.904 47.619 0.00 0.00 35.05 4.52
722 723 1.283613 AGGAACGGGTAATTCATGCCA 59.716 47.619 0.00 0.00 35.05 4.92
723 724 1.676006 CAGGAACGGGTAATTCATGCC 59.324 52.381 0.00 0.00 31.85 4.40
724 725 1.676006 CCAGGAACGGGTAATTCATGC 59.324 52.381 0.00 0.00 39.39 4.06
743 744 4.443834 CCTTTTAGGCAGGAATGGGAACC 61.444 52.174 0.00 0.00 41.35 3.62
744 745 2.760650 CCTTTTAGGCAGGAATGGGAAC 59.239 50.000 0.00 0.00 32.41 3.62
745 746 2.381961 ACCTTTTAGGCAGGAATGGGAA 59.618 45.455 0.00 0.00 39.63 3.97
746 747 2.000048 ACCTTTTAGGCAGGAATGGGA 59.000 47.619 0.00 0.00 39.63 4.37
747 748 2.102578 CACCTTTTAGGCAGGAATGGG 58.897 52.381 0.00 0.00 39.63 4.00
748 749 1.478105 GCACCTTTTAGGCAGGAATGG 59.522 52.381 0.00 0.00 39.63 3.16
749 750 2.424956 GAGCACCTTTTAGGCAGGAATG 59.575 50.000 0.00 0.00 39.63 2.67
750 751 2.621668 GGAGCACCTTTTAGGCAGGAAT 60.622 50.000 0.00 0.00 39.63 3.01
751 752 1.271926 GGAGCACCTTTTAGGCAGGAA 60.272 52.381 0.00 0.00 39.63 3.36
752 753 0.328258 GGAGCACCTTTTAGGCAGGA 59.672 55.000 0.00 0.00 39.63 3.86
753 754 0.681243 GGGAGCACCTTTTAGGCAGG 60.681 60.000 0.00 0.00 39.63 4.85
754 755 2.873797 GGGAGCACCTTTTAGGCAG 58.126 57.895 0.00 0.00 39.63 4.85
764 765 2.069165 AACCAGGAACAGGGAGCACC 62.069 60.000 0.00 0.00 40.36 5.01
765 766 0.606673 GAACCAGGAACAGGGAGCAC 60.607 60.000 0.00 0.00 40.36 4.40
766 767 0.768221 AGAACCAGGAACAGGGAGCA 60.768 55.000 0.00 0.00 40.36 4.26
773 774 3.071023 CAGTTACAGGAGAACCAGGAACA 59.929 47.826 8.90 0.00 45.32 3.18
938 939 3.449737 CGGGTTCTACCATAGAGGACAAA 59.550 47.826 0.00 0.00 41.02 2.83
942 943 2.747467 CGACGGGTTCTACCATAGAGGA 60.747 54.545 0.00 0.00 41.02 3.71
998 999 0.171455 GACTCGAACCGCTGACATCT 59.829 55.000 0.00 0.00 0.00 2.90
1099 1100 8.499403 TTATCAACGTCCATGAATGTGAAATA 57.501 30.769 0.00 0.00 0.00 1.40
1226 1227 1.596934 CTTGCTACGCCCTTCCTCA 59.403 57.895 0.00 0.00 0.00 3.86
1589 1694 2.440409 GTGGTCCTTGCTGATTCACAT 58.560 47.619 0.00 0.00 0.00 3.21
1787 1892 1.250840 CCTTAACCAAGCCACTGCCC 61.251 60.000 0.00 0.00 38.69 5.36
1934 2039 5.063204 TGATTCTTCAACATCAGTCGGTTT 58.937 37.500 0.00 0.00 0.00 3.27
1969 2074 1.360852 TGGCATTTCACCCCTAACCAT 59.639 47.619 0.00 0.00 0.00 3.55
2205 2412 1.635817 GGGCCTTAGCTGGTGATCCA 61.636 60.000 0.84 0.00 42.08 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.