Multiple sequence alignment - TraesCS1A01G343000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G343000 | chr1A | 100.000 | 7063 | 0 | 0 | 1 | 7063 | 531716134 | 531723196 | 0.000000e+00 | 13044 |
1 | TraesCS1A01G343000 | chr1B | 92.562 | 5028 | 241 | 60 | 722 | 5687 | 585325876 | 585330832 | 0.000000e+00 | 7090 |
2 | TraesCS1A01G343000 | chr1B | 87.317 | 1364 | 116 | 37 | 5724 | 7046 | 585330986 | 585332333 | 0.000000e+00 | 1507 |
3 | TraesCS1A01G343000 | chr1D | 93.647 | 4691 | 186 | 57 | 2431 | 7046 | 433365185 | 433369838 | 0.000000e+00 | 6909 |
4 | TraesCS1A01G343000 | chr1D | 90.390 | 1873 | 112 | 39 | 575 | 2433 | 433363323 | 433365141 | 0.000000e+00 | 2399 |
5 | TraesCS1A01G343000 | chr1D | 81.947 | 493 | 77 | 9 | 12 | 498 | 42128531 | 42128045 | 2.370000e-109 | 407 |
6 | TraesCS1A01G343000 | chr5A | 86.136 | 3628 | 406 | 66 | 2653 | 6225 | 691440052 | 691436467 | 0.000000e+00 | 3823 |
7 | TraesCS1A01G343000 | chr5A | 81.161 | 844 | 133 | 20 | 1240 | 2074 | 691441363 | 691440537 | 0.000000e+00 | 654 |
8 | TraesCS1A01G343000 | chr5A | 78.161 | 348 | 64 | 9 | 1711 | 2054 | 382776138 | 382775799 | 2.000000e-50 | 211 |
9 | TraesCS1A01G343000 | chr5A | 78.723 | 282 | 56 | 4 | 5767 | 6046 | 396502711 | 396502990 | 1.210000e-42 | 185 |
10 | TraesCS1A01G343000 | chr5A | 98.571 | 70 | 1 | 0 | 1021 | 1090 | 691441616 | 691441547 | 2.680000e-24 | 124 |
11 | TraesCS1A01G343000 | chrUn | 86.427 | 3529 | 385 | 67 | 2653 | 6123 | 126753063 | 126756555 | 0.000000e+00 | 3777 |
12 | TraesCS1A01G343000 | chrUn | 81.371 | 875 | 123 | 28 | 1210 | 2071 | 126751720 | 126752567 | 0.000000e+00 | 676 |
13 | TraesCS1A01G343000 | chrUn | 98.571 | 70 | 1 | 0 | 1021 | 1090 | 126751499 | 126751568 | 2.680000e-24 | 124 |
14 | TraesCS1A01G343000 | chr4B | 84.657 | 3904 | 455 | 95 | 2435 | 6250 | 653144800 | 653148647 | 0.000000e+00 | 3759 |
15 | TraesCS1A01G343000 | chr4B | 98.571 | 70 | 1 | 0 | 1021 | 1090 | 653143495 | 653143564 | 2.680000e-24 | 124 |
16 | TraesCS1A01G343000 | chr3D | 81.895 | 1784 | 238 | 50 | 3931 | 5671 | 481911874 | 481910133 | 0.000000e+00 | 1426 |
17 | TraesCS1A01G343000 | chr3D | 78.839 | 1309 | 227 | 36 | 2624 | 3908 | 481913521 | 481912239 | 0.000000e+00 | 837 |
18 | TraesCS1A01G343000 | chr3D | 79.801 | 604 | 108 | 7 | 1232 | 1830 | 481926277 | 481925683 | 1.820000e-115 | 427 |
19 | TraesCS1A01G343000 | chr3D | 84.293 | 382 | 51 | 8 | 5719 | 6095 | 481909621 | 481909244 | 1.450000e-96 | 364 |
20 | TraesCS1A01G343000 | chr3D | 77.686 | 363 | 71 | 8 | 1711 | 2071 | 141456601 | 141456955 | 5.550000e-51 | 213 |
21 | TraesCS1A01G343000 | chr6D | 81.511 | 503 | 90 | 3 | 1 | 500 | 20134544 | 20135046 | 1.830000e-110 | 411 |
22 | TraesCS1A01G343000 | chr6D | 75.956 | 366 | 74 | 7 | 1711 | 2074 | 450265545 | 450265192 | 7.280000e-40 | 176 |
23 | TraesCS1A01G343000 | chr6D | 82.123 | 179 | 32 | 0 | 1287 | 1465 | 147220846 | 147220668 | 3.410000e-33 | 154 |
24 | TraesCS1A01G343000 | chr7D | 80.435 | 552 | 95 | 11 | 1 | 548 | 136414365 | 136414907 | 6.590000e-110 | 409 |
25 | TraesCS1A01G343000 | chr7D | 81.579 | 494 | 88 | 3 | 10 | 500 | 628135039 | 628134546 | 8.530000e-109 | 405 |
26 | TraesCS1A01G343000 | chr7B | 80.284 | 563 | 91 | 15 | 10 | 563 | 104298875 | 104298324 | 2.370000e-109 | 407 |
27 | TraesCS1A01G343000 | chr7B | 80.754 | 504 | 90 | 7 | 1 | 500 | 339619011 | 339619511 | 3.090000e-103 | 387 |
28 | TraesCS1A01G343000 | chr2A | 80.108 | 558 | 94 | 12 | 10 | 561 | 66767739 | 66767193 | 3.970000e-107 | 399 |
29 | TraesCS1A01G343000 | chr2A | 78.161 | 348 | 64 | 9 | 1711 | 2054 | 444664856 | 444664517 | 2.000000e-50 | 211 |
30 | TraesCS1A01G343000 | chr2D | 81.339 | 493 | 88 | 4 | 11 | 499 | 112538270 | 112538762 | 1.430000e-106 | 398 |
31 | TraesCS1A01G343000 | chr6B | 80.037 | 541 | 97 | 7 | 10 | 548 | 508533381 | 508532850 | 2.390000e-104 | 390 |
32 | TraesCS1A01G343000 | chr5D | 79.538 | 303 | 60 | 2 | 5745 | 6046 | 299404596 | 299404897 | 1.540000e-51 | 215 |
33 | TraesCS1A01G343000 | chr5B | 79.208 | 303 | 61 | 2 | 5745 | 6046 | 340622801 | 340623102 | 7.180000e-50 | 209 |
34 | TraesCS1A01G343000 | chr5B | 82.386 | 176 | 31 | 0 | 1287 | 1462 | 52305912 | 52306087 | 3.410000e-33 | 154 |
35 | TraesCS1A01G343000 | chr5B | 75.499 | 351 | 67 | 12 | 1711 | 2059 | 645087697 | 645088030 | 3.410000e-33 | 154 |
36 | TraesCS1A01G343000 | chr7A | 77.746 | 346 | 68 | 7 | 1711 | 2054 | 133638226 | 133637888 | 3.340000e-48 | 204 |
37 | TraesCS1A01G343000 | chr3B | 81.250 | 176 | 33 | 0 | 1287 | 1462 | 702359949 | 702360124 | 7.390000e-30 | 143 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G343000 | chr1A | 531716134 | 531723196 | 7062 | False | 13044.000000 | 13044 | 100.000000 | 1 | 7063 | 1 | chr1A.!!$F1 | 7062 |
1 | TraesCS1A01G343000 | chr1B | 585325876 | 585332333 | 6457 | False | 4298.500000 | 7090 | 89.939500 | 722 | 7046 | 2 | chr1B.!!$F1 | 6324 |
2 | TraesCS1A01G343000 | chr1D | 433363323 | 433369838 | 6515 | False | 4654.000000 | 6909 | 92.018500 | 575 | 7046 | 2 | chr1D.!!$F1 | 6471 |
3 | TraesCS1A01G343000 | chr5A | 691436467 | 691441616 | 5149 | True | 1533.666667 | 3823 | 88.622667 | 1021 | 6225 | 3 | chr5A.!!$R2 | 5204 |
4 | TraesCS1A01G343000 | chrUn | 126751499 | 126756555 | 5056 | False | 1525.666667 | 3777 | 88.789667 | 1021 | 6123 | 3 | chrUn.!!$F1 | 5102 |
5 | TraesCS1A01G343000 | chr4B | 653143495 | 653148647 | 5152 | False | 1941.500000 | 3759 | 91.614000 | 1021 | 6250 | 2 | chr4B.!!$F1 | 5229 |
6 | TraesCS1A01G343000 | chr3D | 481909244 | 481913521 | 4277 | True | 875.666667 | 1426 | 81.675667 | 2624 | 6095 | 3 | chr3D.!!$R2 | 3471 |
7 | TraesCS1A01G343000 | chr3D | 481925683 | 481926277 | 594 | True | 427.000000 | 427 | 79.801000 | 1232 | 1830 | 1 | chr3D.!!$R1 | 598 |
8 | TraesCS1A01G343000 | chr6D | 20134544 | 20135046 | 502 | False | 411.000000 | 411 | 81.511000 | 1 | 500 | 1 | chr6D.!!$F1 | 499 |
9 | TraesCS1A01G343000 | chr7D | 136414365 | 136414907 | 542 | False | 409.000000 | 409 | 80.435000 | 1 | 548 | 1 | chr7D.!!$F1 | 547 |
10 | TraesCS1A01G343000 | chr7B | 104298324 | 104298875 | 551 | True | 407.000000 | 407 | 80.284000 | 10 | 563 | 1 | chr7B.!!$R1 | 553 |
11 | TraesCS1A01G343000 | chr7B | 339619011 | 339619511 | 500 | False | 387.000000 | 387 | 80.754000 | 1 | 500 | 1 | chr7B.!!$F1 | 499 |
12 | TraesCS1A01G343000 | chr2A | 66767193 | 66767739 | 546 | True | 399.000000 | 399 | 80.108000 | 10 | 561 | 1 | chr2A.!!$R1 | 551 |
13 | TraesCS1A01G343000 | chr6B | 508532850 | 508533381 | 531 | True | 390.000000 | 390 | 80.037000 | 10 | 548 | 1 | chr6B.!!$R1 | 538 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
965 | 1016 | 0.031585 | TTTGGAGACGACGACCAGTG | 59.968 | 55.000 | 0.00 | 0.0 | 35.08 | 3.66 | F |
1110 | 1199 | 0.107945 | CCCTTCTCTCCGCCTTCTTG | 60.108 | 60.000 | 0.00 | 0.0 | 0.00 | 3.02 | F |
1658 | 1853 | 0.679002 | CCCTCTCATGCCACACAAGG | 60.679 | 60.000 | 0.00 | 0.0 | 0.00 | 3.61 | F |
2000 | 2222 | 1.466167 | CCTCAGTGTCGCTCCAATTTG | 59.534 | 52.381 | 0.00 | 0.0 | 0.00 | 2.32 | F |
3595 | 3996 | 0.645868 | GATTTCGTACAGGTCTGCGC | 59.354 | 55.000 | 0.00 | 0.0 | 0.00 | 6.09 | F |
4861 | 5634 | 4.588951 | ACGAGTATGGCCTTGATCTAATGA | 59.411 | 41.667 | 3.32 | 0.0 | 0.00 | 2.57 | F |
5533 | 6364 | 2.806818 | CCATCTCCTCATTGCTTCGATG | 59.193 | 50.000 | 0.00 | 0.0 | 0.00 | 3.84 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2312 | 2552 | 1.295423 | GTCGCCTGCTACTCCCAAA | 59.705 | 57.895 | 0.00 | 0.00 | 0.00 | 3.28 | R |
2450 | 2748 | 3.494048 | CCTGGTCAGCTGATATGTTCCTC | 60.494 | 52.174 | 21.47 | 2.96 | 0.00 | 3.71 | R |
3219 | 3597 | 0.952984 | AGAAGAGTGCGCCAAGAAGC | 60.953 | 55.000 | 4.18 | 0.00 | 0.00 | 3.86 | R |
3706 | 4107 | 0.317160 | TTAGTGACAGACCTGTGGCG | 59.683 | 55.000 | 7.47 | 0.00 | 45.05 | 5.69 | R |
4869 | 5655 | 3.090037 | AGTGTGCACGGAGAGTTATACT | 58.910 | 45.455 | 13.13 | 2.73 | 36.20 | 2.12 | R |
5771 | 7200 | 0.679640 | TGCCCCCGTATCTTGCTTTG | 60.680 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 | R |
6809 | 8309 | 1.894756 | CTGCAAAACCGTTCCCCGA | 60.895 | 57.895 | 0.00 | 0.00 | 39.56 | 5.14 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
53 | 55 | 3.869065 | CGGAGGGCACTGTTTTTAGATA | 58.131 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
56 | 59 | 5.357032 | CGGAGGGCACTGTTTTTAGATATTT | 59.643 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
84 | 87 | 5.673514 | AGTTTTGTTAAGGTTCGTGTCCTA | 58.326 | 37.500 | 0.00 | 0.00 | 34.56 | 2.94 |
105 | 108 | 0.539669 | TCAGGAAGACGAGGCAGTGA | 60.540 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
121 | 124 | 2.941453 | GTGACGGCTCACTGAAGATA | 57.059 | 50.000 | 9.05 | 0.00 | 43.26 | 1.98 |
122 | 125 | 3.232213 | GTGACGGCTCACTGAAGATAA | 57.768 | 47.619 | 9.05 | 0.00 | 43.26 | 1.75 |
123 | 126 | 3.786635 | GTGACGGCTCACTGAAGATAAT | 58.213 | 45.455 | 9.05 | 0.00 | 43.26 | 1.28 |
160 | 164 | 4.376170 | GCCCCCATTCCGGTGGTT | 62.376 | 66.667 | 10.05 | 0.00 | 37.57 | 3.67 |
162 | 166 | 2.760477 | CCCCATTCCGGTGGTTCA | 59.240 | 61.111 | 10.05 | 0.00 | 37.57 | 3.18 |
178 | 182 | 2.292569 | GGTTCATCTAGCATCGTCGGTA | 59.707 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
197 | 201 | 2.521105 | AGACGTGTTAAGGTGTGTCC | 57.479 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
202 | 206 | 1.055551 | TGTTAAGGTGTGTCCCCGGT | 61.056 | 55.000 | 0.00 | 0.00 | 36.75 | 5.28 |
220 | 224 | 2.648059 | GGTGGATCTGTCTTTGATGGG | 58.352 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
227 | 231 | 3.565307 | TCTGTCTTTGATGGGTTTGCTT | 58.435 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
230 | 234 | 1.969923 | TCTTTGATGGGTTTGCTTGGG | 59.030 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
235 | 239 | 0.108396 | ATGGGTTTGCTTGGGTTTGC | 59.892 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
249 | 253 | 1.798813 | GGTTTGCTCATCGTTCGTCTT | 59.201 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
251 | 255 | 2.432206 | TTGCTCATCGTTCGTCTTCA | 57.568 | 45.000 | 0.00 | 0.00 | 0.00 | 3.02 |
267 | 271 | 3.565482 | GTCTTCATTTGTGTGCCTTCAGA | 59.435 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
306 | 310 | 1.437573 | CTACTCTTCATCGGCGGCA | 59.562 | 57.895 | 10.53 | 0.00 | 0.00 | 5.69 |
307 | 311 | 0.179111 | CTACTCTTCATCGGCGGCAA | 60.179 | 55.000 | 10.53 | 0.00 | 0.00 | 4.52 |
322 | 326 | 1.066908 | CGGCAATTGTTGTTCTGGTGT | 59.933 | 47.619 | 7.40 | 0.00 | 0.00 | 4.16 |
323 | 327 | 2.481104 | CGGCAATTGTTGTTCTGGTGTT | 60.481 | 45.455 | 7.40 | 0.00 | 0.00 | 3.32 |
329 | 333 | 5.923733 | ATTGTTGTTCTGGTGTTTTGGTA | 57.076 | 34.783 | 0.00 | 0.00 | 0.00 | 3.25 |
333 | 337 | 5.354792 | TGTTGTTCTGGTGTTTTGGTACTAC | 59.645 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
334 | 338 | 5.100344 | TGTTCTGGTGTTTTGGTACTACA | 57.900 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
339 | 343 | 2.224695 | GGTGTTTTGGTACTACAGGGCT | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
344 | 348 | 5.163174 | TGTTTTGGTACTACAGGGCTTTAGT | 60.163 | 40.000 | 0.00 | 0.00 | 33.11 | 2.24 |
350 | 354 | 5.765182 | GGTACTACAGGGCTTTAGTACGATA | 59.235 | 44.000 | 17.07 | 0.00 | 46.32 | 2.92 |
361 | 365 | 5.230936 | GCTTTAGTACGATAACTTTCCGACC | 59.769 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
366 | 370 | 2.159462 | ACGATAACTTTCCGACCGTCTC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
376 | 381 | 1.668047 | CCGACCGTCTCCTACAACAAC | 60.668 | 57.143 | 0.00 | 0.00 | 0.00 | 3.32 |
404 | 409 | 2.443016 | CTCTGACGAGGGAGGGGG | 60.443 | 72.222 | 0.00 | 0.00 | 33.51 | 5.40 |
433 | 439 | 2.684843 | GGCACCTTCAGCTCGCTTG | 61.685 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
443 | 449 | 1.206072 | GCTCGCTTGAGTGCTTGTG | 59.794 | 57.895 | 0.00 | 0.00 | 42.01 | 3.33 |
445 | 451 | 0.601046 | CTCGCTTGAGTGCTTGTGGA | 60.601 | 55.000 | 0.00 | 0.00 | 34.89 | 4.02 |
503 | 509 | 9.840427 | ATTTTTATTATTTCTGGTGTTCGACTG | 57.160 | 29.630 | 0.00 | 0.00 | 0.00 | 3.51 |
504 | 510 | 7.972832 | TTTATTATTTCTGGTGTTCGACTGT | 57.027 | 32.000 | 0.00 | 0.00 | 0.00 | 3.55 |
505 | 511 | 7.972832 | TTATTATTTCTGGTGTTCGACTGTT | 57.027 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
506 | 512 | 5.917541 | TTATTTCTGGTGTTCGACTGTTC | 57.082 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
508 | 514 | 0.742505 | TCTGGTGTTCGACTGTTCGT | 59.257 | 50.000 | 0.00 | 0.00 | 46.01 | 3.85 |
509 | 515 | 1.135527 | TCTGGTGTTCGACTGTTCGTT | 59.864 | 47.619 | 0.00 | 0.00 | 46.01 | 3.85 |
510 | 516 | 2.358582 | TCTGGTGTTCGACTGTTCGTTA | 59.641 | 45.455 | 0.00 | 0.00 | 46.01 | 3.18 |
511 | 517 | 3.005050 | TCTGGTGTTCGACTGTTCGTTAT | 59.995 | 43.478 | 0.00 | 0.00 | 46.01 | 1.89 |
512 | 518 | 4.216042 | TCTGGTGTTCGACTGTTCGTTATA | 59.784 | 41.667 | 0.00 | 0.00 | 46.01 | 0.98 |
513 | 519 | 4.229096 | TGGTGTTCGACTGTTCGTTATAC | 58.771 | 43.478 | 0.00 | 0.00 | 46.01 | 1.47 |
514 | 520 | 3.609807 | GGTGTTCGACTGTTCGTTATACC | 59.390 | 47.826 | 0.00 | 0.00 | 46.01 | 2.73 |
515 | 521 | 3.299020 | GTGTTCGACTGTTCGTTATACCG | 59.701 | 47.826 | 0.00 | 0.00 | 46.01 | 4.02 |
516 | 522 | 2.178474 | TCGACTGTTCGTTATACCGC | 57.822 | 50.000 | 0.00 | 0.00 | 46.01 | 5.68 |
517 | 523 | 1.194495 | CGACTGTTCGTTATACCGCC | 58.806 | 55.000 | 0.00 | 0.00 | 40.61 | 6.13 |
518 | 524 | 1.564207 | GACTGTTCGTTATACCGCCC | 58.436 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
519 | 525 | 1.135721 | GACTGTTCGTTATACCGCCCT | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
520 | 526 | 1.134907 | ACTGTTCGTTATACCGCCCTG | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
521 | 527 | 1.135527 | CTGTTCGTTATACCGCCCTGA | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
522 | 528 | 1.758280 | TGTTCGTTATACCGCCCTGAT | 59.242 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
523 | 529 | 2.168936 | TGTTCGTTATACCGCCCTGATT | 59.831 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
524 | 530 | 2.519377 | TCGTTATACCGCCCTGATTG | 57.481 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
525 | 531 | 2.033372 | TCGTTATACCGCCCTGATTGA | 58.967 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
526 | 532 | 2.431419 | TCGTTATACCGCCCTGATTGAA | 59.569 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
527 | 533 | 3.070446 | TCGTTATACCGCCCTGATTGAAT | 59.930 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
528 | 534 | 4.281435 | TCGTTATACCGCCCTGATTGAATA | 59.719 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
529 | 535 | 5.046878 | TCGTTATACCGCCCTGATTGAATAT | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
530 | 536 | 5.063438 | CGTTATACCGCCCTGATTGAATATG | 59.937 | 44.000 | 0.00 | 0.00 | 0.00 | 1.78 |
531 | 537 | 4.908601 | ATACCGCCCTGATTGAATATGA | 57.091 | 40.909 | 0.00 | 0.00 | 0.00 | 2.15 |
532 | 538 | 3.131709 | ACCGCCCTGATTGAATATGAG | 57.868 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
533 | 539 | 2.439507 | ACCGCCCTGATTGAATATGAGT | 59.560 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
534 | 540 | 3.646162 | ACCGCCCTGATTGAATATGAGTA | 59.354 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
535 | 541 | 4.248859 | CCGCCCTGATTGAATATGAGTAG | 58.751 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
536 | 542 | 4.021104 | CCGCCCTGATTGAATATGAGTAGA | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
537 | 543 | 5.337894 | CCGCCCTGATTGAATATGAGTAGAT | 60.338 | 44.000 | 0.00 | 0.00 | 0.00 | 1.98 |
538 | 544 | 5.809562 | CGCCCTGATTGAATATGAGTAGATC | 59.190 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
539 | 545 | 5.809562 | GCCCTGATTGAATATGAGTAGATCG | 59.190 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
540 | 546 | 6.350528 | GCCCTGATTGAATATGAGTAGATCGA | 60.351 | 42.308 | 0.00 | 0.00 | 0.00 | 3.59 |
541 | 547 | 7.606349 | CCCTGATTGAATATGAGTAGATCGAA | 58.394 | 38.462 | 0.00 | 0.00 | 0.00 | 3.71 |
542 | 548 | 8.090831 | CCCTGATTGAATATGAGTAGATCGAAA | 58.909 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
543 | 549 | 9.138062 | CCTGATTGAATATGAGTAGATCGAAAG | 57.862 | 37.037 | 0.00 | 0.00 | 0.00 | 2.62 |
544 | 550 | 9.689976 | CTGATTGAATATGAGTAGATCGAAAGT | 57.310 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
582 | 588 | 6.432607 | ACAAGAGTGACTTATTATCGTCGA | 57.567 | 37.500 | 0.00 | 0.00 | 37.03 | 4.20 |
584 | 590 | 5.080642 | AGAGTGACTTATTATCGTCGACG | 57.919 | 43.478 | 31.30 | 31.30 | 41.45 | 5.12 |
592 | 598 | 0.794229 | TTATCGTCGACGTGAACGGC | 60.794 | 55.000 | 34.40 | 2.72 | 45.58 | 5.68 |
606 | 612 | 3.307242 | GTGAACGGCTAGCAATCTTACAG | 59.693 | 47.826 | 18.24 | 0.00 | 0.00 | 2.74 |
647 | 654 | 3.190337 | GCAGCTTGTTTGCCTCTTG | 57.810 | 52.632 | 0.00 | 0.00 | 35.54 | 3.02 |
651 | 658 | 3.524541 | CAGCTTGTTTGCCTCTTGTTTT | 58.475 | 40.909 | 0.00 | 0.00 | 0.00 | 2.43 |
672 | 680 | 3.377434 | TTTGACACAGTTCGTTCAACG | 57.623 | 42.857 | 2.64 | 2.64 | 44.19 | 4.10 |
682 | 690 | 3.893720 | GTTCGTTCAACGGACTCTAGAA | 58.106 | 45.455 | 14.49 | 0.00 | 46.16 | 2.10 |
690 | 698 | 5.311265 | TCAACGGACTCTAGAAGACAAGTA | 58.689 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
691 | 699 | 5.180868 | TCAACGGACTCTAGAAGACAAGTAC | 59.819 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
692 | 700 | 4.909001 | ACGGACTCTAGAAGACAAGTACT | 58.091 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
698 | 706 | 6.117488 | ACTCTAGAAGACAAGTACTAGGAGC | 58.883 | 44.000 | 0.00 | 0.00 | 34.80 | 4.70 |
704 | 712 | 3.940221 | AGACAAGTACTAGGAGCACTACG | 59.060 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
705 | 713 | 2.422832 | ACAAGTACTAGGAGCACTACGC | 59.577 | 50.000 | 0.00 | 0.00 | 42.91 | 4.42 |
719 | 727 | 3.360533 | CACTACGCGTAGAACTACATGG | 58.639 | 50.000 | 43.57 | 20.66 | 36.97 | 3.66 |
745 | 754 | 1.146263 | GGCCCACATAGGTTCCGAG | 59.854 | 63.158 | 0.00 | 0.00 | 34.66 | 4.63 |
752 | 761 | 3.684788 | CCACATAGGTTCCGAGAAACTTG | 59.315 | 47.826 | 9.09 | 9.51 | 0.00 | 3.16 |
762 | 771 | 5.215252 | TCCGAGAAACTTGAGAAGTCAAT | 57.785 | 39.130 | 0.00 | 0.00 | 41.96 | 2.57 |
765 | 774 | 5.466728 | CCGAGAAACTTGAGAAGTCAATCAA | 59.533 | 40.000 | 0.00 | 0.00 | 41.96 | 2.57 |
767 | 776 | 6.848296 | CGAGAAACTTGAGAAGTCAATCAAAC | 59.152 | 38.462 | 0.00 | 0.00 | 41.96 | 2.93 |
768 | 777 | 7.465916 | CGAGAAACTTGAGAAGTCAATCAAACA | 60.466 | 37.037 | 0.00 | 0.00 | 41.96 | 2.83 |
769 | 778 | 8.055279 | AGAAACTTGAGAAGTCAATCAAACAA | 57.945 | 30.769 | 0.00 | 0.00 | 41.96 | 2.83 |
770 | 779 | 8.522830 | AGAAACTTGAGAAGTCAATCAAACAAA | 58.477 | 29.630 | 0.00 | 0.00 | 41.96 | 2.83 |
771 | 780 | 9.139174 | GAAACTTGAGAAGTCAATCAAACAAAA | 57.861 | 29.630 | 0.00 | 0.00 | 41.96 | 2.44 |
772 | 781 | 9.487790 | AAACTTGAGAAGTCAATCAAACAAAAA | 57.512 | 25.926 | 0.00 | 0.00 | 41.96 | 1.94 |
814 | 823 | 8.602472 | TTGCTAATAATCACATTTAACCCCTT | 57.398 | 30.769 | 0.00 | 0.00 | 0.00 | 3.95 |
815 | 824 | 8.006298 | TGCTAATAATCACATTTAACCCCTTG | 57.994 | 34.615 | 0.00 | 0.00 | 0.00 | 3.61 |
839 | 859 | 2.507407 | TGTCTCTAAATTGCACCCCC | 57.493 | 50.000 | 0.00 | 0.00 | 0.00 | 5.40 |
840 | 860 | 1.707989 | TGTCTCTAAATTGCACCCCCA | 59.292 | 47.619 | 0.00 | 0.00 | 0.00 | 4.96 |
842 | 862 | 1.005450 | TCTCTAAATTGCACCCCCACC | 59.995 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
844 | 864 | 1.304547 | TAAATTGCACCCCCACCGG | 60.305 | 57.895 | 0.00 | 0.00 | 0.00 | 5.28 |
881 | 907 | 1.377987 | ACACCACACCACACCACAC | 60.378 | 57.895 | 0.00 | 0.00 | 0.00 | 3.82 |
882 | 908 | 2.118404 | CACCACACCACACCACACC | 61.118 | 63.158 | 0.00 | 0.00 | 0.00 | 4.16 |
883 | 909 | 2.273776 | CCACACCACACCACACCA | 59.726 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
884 | 910 | 2.118404 | CCACACCACACCACACCAC | 61.118 | 63.158 | 0.00 | 0.00 | 0.00 | 4.16 |
885 | 911 | 2.118404 | CACACCACACCACACCACC | 61.118 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
886 | 912 | 2.899838 | CACCACACCACACCACCG | 60.900 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
954 | 980 | 3.883489 | AGGCGGCTATAAAATTTGGAGAC | 59.117 | 43.478 | 11.03 | 0.00 | 0.00 | 3.36 |
965 | 1016 | 0.031585 | TTTGGAGACGACGACCAGTG | 59.968 | 55.000 | 0.00 | 0.00 | 35.08 | 3.66 |
992 | 1043 | 2.546795 | CCATCTTTCTCCTCCGAATCCG | 60.547 | 54.545 | 0.00 | 0.00 | 0.00 | 4.18 |
1018 | 1073 | 4.316823 | TGGACTCCTCCACCGGCT | 62.317 | 66.667 | 0.00 | 0.00 | 42.15 | 5.52 |
1019 | 1074 | 3.462678 | GGACTCCTCCACCGGCTC | 61.463 | 72.222 | 0.00 | 0.00 | 36.42 | 4.70 |
1102 | 1191 | 1.040339 | CCAGGTCTCCCTTCTCTCCG | 61.040 | 65.000 | 0.00 | 0.00 | 39.89 | 4.63 |
1110 | 1199 | 0.107945 | CCCTTCTCTCCGCCTTCTTG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1111 | 1200 | 0.742635 | CCTTCTCTCCGCCTTCTTGC | 60.743 | 60.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1188 | 1280 | 3.361644 | CGTGAACTGATTTGAATTTGCCG | 59.638 | 43.478 | 0.00 | 0.00 | 0.00 | 5.69 |
1190 | 1282 | 4.382754 | GTGAACTGATTTGAATTTGCCGAC | 59.617 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
1194 | 1286 | 5.600696 | ACTGATTTGAATTTGCCGACTTTT | 58.399 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
1204 | 1296 | 4.647424 | TTGCCGACTTTTTCTGATTTGT | 57.353 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
1304 | 1492 | 2.493973 | CTCCTCTGCGTCCTGCTC | 59.506 | 66.667 | 0.00 | 0.00 | 46.63 | 4.26 |
1640 | 1835 | 2.501261 | GCCGAAAGTATGTTATCCCCC | 58.499 | 52.381 | 0.00 | 0.00 | 0.00 | 5.40 |
1655 | 1850 | 2.605607 | CCCCCTCTCATGCCACACA | 61.606 | 63.158 | 0.00 | 0.00 | 0.00 | 3.72 |
1658 | 1853 | 0.679002 | CCCTCTCATGCCACACAAGG | 60.679 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
1702 | 1911 | 5.991328 | TCGTTCATAATTCAGGCTCAATC | 57.009 | 39.130 | 0.00 | 0.00 | 0.00 | 2.67 |
1703 | 1912 | 5.674525 | TCGTTCATAATTCAGGCTCAATCT | 58.325 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
1704 | 1913 | 6.115446 | TCGTTCATAATTCAGGCTCAATCTT | 58.885 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1705 | 1914 | 6.258727 | TCGTTCATAATTCAGGCTCAATCTTC | 59.741 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
1708 | 1917 | 5.525012 | TCATAATTCAGGCTCAATCTTCGTG | 59.475 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1893 | 2115 | 3.365364 | CGAAGCTTTTGGTTGGATCTGTC | 60.365 | 47.826 | 0.00 | 0.00 | 40.61 | 3.51 |
1895 | 2117 | 3.416156 | AGCTTTTGGTTGGATCTGTCTC | 58.584 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
1935 | 2157 | 1.996191 | CGCCAGAGTTTAGACAGCTTC | 59.004 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1961 | 2183 | 2.369394 | CCAGCATTTACTCCAGGGAAC | 58.631 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
2000 | 2222 | 1.466167 | CCTCAGTGTCGCTCCAATTTG | 59.534 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
2014 | 2236 | 4.499183 | TCCAATTTGTCGCAAACAGTTTT | 58.501 | 34.783 | 7.08 | 0.00 | 39.58 | 2.43 |
2015 | 2237 | 4.328440 | TCCAATTTGTCGCAAACAGTTTTG | 59.672 | 37.500 | 7.08 | 7.50 | 44.42 | 2.44 |
2130 | 2352 | 5.376625 | ACATGCTTTCTGAACAAGGAGTTA | 58.623 | 37.500 | 0.00 | 0.00 | 41.51 | 2.24 |
2144 | 2380 | 5.869888 | ACAAGGAGTTAGTTAAGATGAAGCG | 59.130 | 40.000 | 0.00 | 0.00 | 0.00 | 4.68 |
2154 | 2390 | 5.872070 | AGTTAAGATGAAGCGAGGAGAAAAG | 59.128 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
2233 | 2473 | 6.470235 | CCTCATGTTTCTAAGCTTTAATTGCG | 59.530 | 38.462 | 3.20 | 0.00 | 35.28 | 4.85 |
2284 | 2524 | 4.660789 | ACAAGCTGCTTTGTTGATTTCT | 57.339 | 36.364 | 13.10 | 0.00 | 38.05 | 2.52 |
2366 | 2606 | 6.933514 | ATTGGACCTTGTAAAATGGTGATT | 57.066 | 33.333 | 0.00 | 0.00 | 36.47 | 2.57 |
2380 | 2620 | 8.574196 | AAAATGGTGATTTTAGAGTGTTTTCG | 57.426 | 30.769 | 0.00 | 0.00 | 39.53 | 3.46 |
2392 | 2635 | 5.123227 | AGAGTGTTTTCGGTCTTCATCAAA | 58.877 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
2423 | 2666 | 3.812609 | TCAGCTTCGTTGCTTGAATGTTA | 59.187 | 39.130 | 2.47 | 0.00 | 41.98 | 2.41 |
2424 | 2667 | 4.274705 | TCAGCTTCGTTGCTTGAATGTTAA | 59.725 | 37.500 | 2.47 | 0.00 | 41.98 | 2.01 |
2425 | 2668 | 5.048782 | TCAGCTTCGTTGCTTGAATGTTAAT | 60.049 | 36.000 | 2.47 | 0.00 | 41.98 | 1.40 |
2428 | 2671 | 5.402270 | GCTTCGTTGCTTGAATGTTAATTGT | 59.598 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2429 | 2672 | 6.580791 | GCTTCGTTGCTTGAATGTTAATTGTA | 59.419 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
2430 | 2673 | 7.273381 | GCTTCGTTGCTTGAATGTTAATTGTAT | 59.727 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2431 | 2674 | 9.128107 | CTTCGTTGCTTGAATGTTAATTGTATT | 57.872 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
2433 | 2676 | 9.767684 | TCGTTGCTTGAATGTTAATTGTATTAG | 57.232 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
2618 | 2972 | 4.233632 | TGAGAATATGCCATTGGTGACA | 57.766 | 40.909 | 4.26 | 0.00 | 39.83 | 3.58 |
2651 | 3013 | 2.990740 | TTTTGTATCCCTTGGGTGCT | 57.009 | 45.000 | 5.51 | 0.00 | 0.00 | 4.40 |
2862 | 3232 | 4.141367 | TGAAGTGGTACCATTGGTTCTTCA | 60.141 | 41.667 | 27.14 | 27.14 | 36.60 | 3.02 |
2868 | 3238 | 5.600484 | TGGTACCATTGGTTCTTCATGTTTT | 59.400 | 36.000 | 14.78 | 0.00 | 37.09 | 2.43 |
2992 | 3366 | 4.778904 | TGCGTTTACTGAAATTGCACTAC | 58.221 | 39.130 | 0.00 | 0.00 | 35.27 | 2.73 |
3219 | 3597 | 7.589954 | ACGAAATTAAAATTTGACCTGTCTTCG | 59.410 | 33.333 | 5.44 | 4.60 | 38.64 | 3.79 |
3595 | 3996 | 0.645868 | GATTTCGTACAGGTCTGCGC | 59.354 | 55.000 | 0.00 | 0.00 | 0.00 | 6.09 |
3706 | 4107 | 6.354622 | CGTCGTTCTTTTCTTCAGTCAAAATC | 59.645 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
3894 | 4297 | 8.483758 | TGAGGATAATAGTTTCCCAAGTAAGTC | 58.516 | 37.037 | 0.00 | 0.00 | 32.05 | 3.01 |
3899 | 4302 | 7.981102 | AATAGTTTCCCAAGTAAGTCACTTC | 57.019 | 36.000 | 0.00 | 0.00 | 44.48 | 3.01 |
3922 | 4675 | 9.831737 | CTTCCTTATTTATGTTTGACAACTCTG | 57.168 | 33.333 | 0.00 | 0.00 | 33.58 | 3.35 |
4362 | 5123 | 6.704289 | TCCCTTGCATATTTCTCAAAGATG | 57.296 | 37.500 | 0.00 | 0.21 | 41.69 | 2.90 |
4407 | 5173 | 4.718961 | AGGCCCTGACAATATATGTGTTC | 58.281 | 43.478 | 0.00 | 0.00 | 44.12 | 3.18 |
4861 | 5634 | 4.588951 | ACGAGTATGGCCTTGATCTAATGA | 59.411 | 41.667 | 3.32 | 0.00 | 0.00 | 2.57 |
4869 | 5655 | 8.945195 | ATGGCCTTGATCTAATGATATTTTCA | 57.055 | 30.769 | 3.32 | 0.00 | 39.12 | 2.69 |
5031 | 5817 | 7.885399 | ACTGAAGGTATAGTTCTGCAATTTCTT | 59.115 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
5061 | 5855 | 6.149308 | TCTGCACCAGTATCTATTGTTGTTTG | 59.851 | 38.462 | 0.00 | 0.00 | 32.61 | 2.93 |
5123 | 5922 | 3.276857 | CCATGCAGCAATAGTTCAGACT | 58.723 | 45.455 | 0.00 | 0.00 | 39.97 | 3.24 |
5327 | 6154 | 6.371825 | CCAAAGTACTTACCTGATTCCTGTTC | 59.628 | 42.308 | 8.92 | 0.00 | 0.00 | 3.18 |
5329 | 6156 | 6.532988 | AGTACTTACCTGATTCCTGTTCTC | 57.467 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
5336 | 6165 | 4.006319 | CCTGATTCCTGTTCTCTTTCCAC | 58.994 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
5344 | 6173 | 2.880268 | TGTTCTCTTTCCACATGCACAG | 59.120 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
5533 | 6364 | 2.806818 | CCATCTCCTCATTGCTTCGATG | 59.193 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
5686 | 6523 | 9.461312 | AAATTACCTATTCACTTGTATGAAGCA | 57.539 | 29.630 | 0.00 | 0.00 | 41.76 | 3.91 |
5687 | 6524 | 7.843490 | TTACCTATTCACTTGTATGAAGCAC | 57.157 | 36.000 | 0.00 | 0.00 | 41.76 | 4.40 |
5688 | 6525 | 5.804639 | ACCTATTCACTTGTATGAAGCACA | 58.195 | 37.500 | 0.00 | 0.00 | 41.76 | 4.57 |
5689 | 6526 | 5.877012 | ACCTATTCACTTGTATGAAGCACAG | 59.123 | 40.000 | 0.00 | 0.00 | 41.76 | 3.66 |
5690 | 6527 | 6.108687 | CCTATTCACTTGTATGAAGCACAGA | 58.891 | 40.000 | 0.00 | 0.00 | 41.76 | 3.41 |
5691 | 6528 | 6.595326 | CCTATTCACTTGTATGAAGCACAGAA | 59.405 | 38.462 | 0.00 | 0.00 | 41.76 | 3.02 |
5692 | 6529 | 7.281774 | CCTATTCACTTGTATGAAGCACAGAAT | 59.718 | 37.037 | 0.00 | 0.00 | 41.76 | 2.40 |
5697 | 6534 | 5.410746 | ACTTGTATGAAGCACAGAATGACAG | 59.589 | 40.000 | 0.00 | 0.00 | 39.69 | 3.51 |
5705 | 7009 | 4.960938 | AGCACAGAATGACAGAACTACAA | 58.039 | 39.130 | 0.00 | 0.00 | 39.69 | 2.41 |
5721 | 7025 | 9.811655 | CAGAACTACAATTTGTGTAACTGTATG | 57.188 | 33.333 | 12.30 | 0.00 | 42.23 | 2.39 |
5742 | 7171 | 8.172484 | TGTATGCTACTTTATTAAACACTTGCG | 58.828 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
5819 | 7248 | 5.503846 | CGTGTTCACAATGACAACATCTTCA | 60.504 | 40.000 | 3.87 | 0.00 | 35.50 | 3.02 |
6141 | 7579 | 6.355638 | GTGTATGAGACTTGTTTGAACTTCG | 58.644 | 40.000 | 0.00 | 0.00 | 0.00 | 3.79 |
6144 | 7582 | 4.689071 | TGAGACTTGTTTGAACTTCGCTA | 58.311 | 39.130 | 0.00 | 0.00 | 0.00 | 4.26 |
6147 | 7585 | 6.365247 | TGAGACTTGTTTGAACTTCGCTATAC | 59.635 | 38.462 | 0.00 | 0.00 | 0.00 | 1.47 |
6148 | 7586 | 5.345202 | AGACTTGTTTGAACTTCGCTATACG | 59.655 | 40.000 | 0.00 | 0.00 | 45.62 | 3.06 |
6149 | 7587 | 4.387862 | ACTTGTTTGAACTTCGCTATACGG | 59.612 | 41.667 | 0.00 | 0.00 | 43.89 | 4.02 |
6172 | 7610 | 4.159244 | AGTTTTGGTTAGTGTGGCACTA | 57.841 | 40.909 | 19.83 | 5.03 | 43.46 | 2.74 |
6174 | 7612 | 2.851263 | TTGGTTAGTGTGGCACTAGG | 57.149 | 50.000 | 19.83 | 0.00 | 45.83 | 3.02 |
6246 | 7684 | 3.241493 | TGGCAATTCCAGTGTACCG | 57.759 | 52.632 | 0.00 | 0.00 | 40.72 | 4.02 |
6252 | 7690 | 3.936453 | GCAATTCCAGTGTACCGTATTCA | 59.064 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
6431 | 7870 | 8.846943 | AAACTGAACAAAATATGAAATTCCCC | 57.153 | 30.769 | 0.00 | 0.00 | 0.00 | 4.81 |
6432 | 7871 | 6.946340 | ACTGAACAAAATATGAAATTCCCCC | 58.054 | 36.000 | 0.00 | 0.00 | 0.00 | 5.40 |
6434 | 7873 | 7.017056 | ACTGAACAAAATATGAAATTCCCCCAA | 59.983 | 33.333 | 0.00 | 0.00 | 0.00 | 4.12 |
6435 | 7874 | 7.749666 | TGAACAAAATATGAAATTCCCCCAAA | 58.250 | 30.769 | 0.00 | 0.00 | 0.00 | 3.28 |
6436 | 7875 | 8.220559 | TGAACAAAATATGAAATTCCCCCAAAA | 58.779 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
6437 | 7876 | 9.072375 | GAACAAAATATGAAATTCCCCCAAAAA | 57.928 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
6731 | 8231 | 0.320771 | AATGTCGACCTCACCTGTGC | 60.321 | 55.000 | 14.12 | 0.00 | 0.00 | 4.57 |
6732 | 8232 | 1.471829 | ATGTCGACCTCACCTGTGCA | 61.472 | 55.000 | 14.12 | 0.00 | 0.00 | 4.57 |
6752 | 8252 | 3.841643 | CATTTCTGCATCCCTCAACAAC | 58.158 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
6809 | 8309 | 2.097466 | CGTGCGGCAAATAGGAAATTCT | 59.903 | 45.455 | 3.23 | 0.00 | 0.00 | 2.40 |
6891 | 8391 | 7.585579 | TTTATCCACCGGTTTTCTAGTTTTT | 57.414 | 32.000 | 2.97 | 0.00 | 0.00 | 1.94 |
6930 | 8433 | 7.279090 | ACAAAATTTTCTAGGGTTTGTTTTCGG | 59.721 | 33.333 | 0.00 | 0.00 | 38.85 | 4.30 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 2.442272 | CCGAGATCCACCGGGTCT | 60.442 | 66.667 | 6.32 | 3.23 | 41.89 | 3.85 |
56 | 59 | 6.679843 | ACACGAACCTTAACAAAACTCAAAA | 58.320 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
84 | 87 | 0.540830 | ACTGCCTCGTCTTCCTGAGT | 60.541 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
105 | 108 | 6.267928 | ACCTTATATTATCTTCAGTGAGCCGT | 59.732 | 38.462 | 0.00 | 0.00 | 0.00 | 5.68 |
112 | 115 | 8.361139 | CGGTGAGAACCTTATATTATCTTCAGT | 58.639 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
121 | 124 | 6.053650 | GGCTAAACGGTGAGAACCTTATATT | 58.946 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
122 | 125 | 5.454329 | GGGCTAAACGGTGAGAACCTTATAT | 60.454 | 44.000 | 0.00 | 0.00 | 0.00 | 0.86 |
123 | 126 | 4.141869 | GGGCTAAACGGTGAGAACCTTATA | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
135 | 138 | 1.305287 | GGAATGGGGGCTAAACGGT | 59.695 | 57.895 | 0.00 | 0.00 | 0.00 | 4.83 |
140 | 143 | 3.003230 | CACCGGAATGGGGGCTAA | 58.997 | 61.111 | 9.46 | 0.00 | 44.64 | 3.09 |
160 | 164 | 2.806818 | GTCTACCGACGATGCTAGATGA | 59.193 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
178 | 182 | 1.069668 | GGGACACACCTTAACACGTCT | 59.930 | 52.381 | 0.00 | 0.00 | 38.98 | 4.18 |
186 | 190 | 2.218454 | CCACCGGGGACACACCTTA | 61.218 | 63.158 | 4.41 | 0.00 | 40.01 | 2.69 |
197 | 201 | 0.613260 | TCAAAGACAGATCCACCGGG | 59.387 | 55.000 | 6.32 | 0.00 | 0.00 | 5.73 |
202 | 206 | 4.081406 | CAAACCCATCAAAGACAGATCCA | 58.919 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
209 | 213 | 2.289010 | CCCAAGCAAACCCATCAAAGAC | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
220 | 224 | 2.407090 | GATGAGCAAACCCAAGCAAAC | 58.593 | 47.619 | 0.00 | 0.00 | 0.00 | 2.93 |
227 | 231 | 0.250124 | ACGAACGATGAGCAAACCCA | 60.250 | 50.000 | 0.14 | 0.00 | 0.00 | 4.51 |
230 | 234 | 2.475111 | TGAAGACGAACGATGAGCAAAC | 59.525 | 45.455 | 0.14 | 0.00 | 0.00 | 2.93 |
235 | 239 | 4.150627 | ACACAAATGAAGACGAACGATGAG | 59.849 | 41.667 | 0.14 | 0.00 | 0.00 | 2.90 |
249 | 253 | 3.256383 | CCAATCTGAAGGCACACAAATGA | 59.744 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
251 | 255 | 3.499338 | TCCAATCTGAAGGCACACAAAT | 58.501 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
267 | 271 | 3.139077 | GCGTAAATCGGAAGGATCCAAT | 58.861 | 45.455 | 15.82 | 1.38 | 46.97 | 3.16 |
306 | 310 | 5.159273 | ACCAAAACACCAGAACAACAATT | 57.841 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
307 | 311 | 4.817318 | ACCAAAACACCAGAACAACAAT | 57.183 | 36.364 | 0.00 | 0.00 | 0.00 | 2.71 |
322 | 326 | 5.571791 | ACTAAAGCCCTGTAGTACCAAAA | 57.428 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
323 | 327 | 5.336690 | CGTACTAAAGCCCTGTAGTACCAAA | 60.337 | 44.000 | 21.59 | 0.00 | 45.16 | 3.28 |
329 | 333 | 5.890419 | AGTTATCGTACTAAAGCCCTGTAGT | 59.110 | 40.000 | 3.78 | 3.78 | 34.89 | 2.73 |
333 | 337 | 5.522824 | GGAAAGTTATCGTACTAAAGCCCTG | 59.477 | 44.000 | 0.00 | 0.00 | 0.00 | 4.45 |
334 | 338 | 5.668471 | GGAAAGTTATCGTACTAAAGCCCT | 58.332 | 41.667 | 0.00 | 0.00 | 0.00 | 5.19 |
339 | 343 | 5.106317 | ACGGTCGGAAAGTTATCGTACTAAA | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
344 | 348 | 3.009723 | AGACGGTCGGAAAGTTATCGTA | 58.990 | 45.455 | 1.89 | 0.00 | 0.00 | 3.43 |
350 | 354 | 1.543358 | GTAGGAGACGGTCGGAAAGTT | 59.457 | 52.381 | 1.89 | 0.00 | 0.00 | 2.66 |
361 | 365 | 4.025145 | GGACAAAAGTTGTTGTAGGAGACG | 60.025 | 45.833 | 0.00 | 0.00 | 45.52 | 4.18 |
366 | 370 | 2.287368 | GCCGGACAAAAGTTGTTGTAGG | 60.287 | 50.000 | 5.05 | 13.91 | 45.52 | 3.18 |
376 | 381 | 0.319555 | TCGTCAGAGCCGGACAAAAG | 60.320 | 55.000 | 5.05 | 0.00 | 34.97 | 2.27 |
415 | 421 | 2.359230 | AAGCGAGCTGAAGGTGCC | 60.359 | 61.111 | 0.00 | 0.00 | 0.00 | 5.01 |
418 | 424 | 0.320247 | CACTCAAGCGAGCTGAAGGT | 60.320 | 55.000 | 0.00 | 0.00 | 43.66 | 3.50 |
424 | 430 | 1.070445 | ACAAGCACTCAAGCGAGCT | 59.930 | 52.632 | 0.00 | 0.00 | 43.66 | 4.09 |
433 | 439 | 0.874607 | AACGACGTCCACAAGCACTC | 60.875 | 55.000 | 10.58 | 0.00 | 0.00 | 3.51 |
443 | 449 | 2.679837 | TGTAGACCATCTAACGACGTCC | 59.320 | 50.000 | 10.58 | 0.00 | 29.58 | 4.79 |
445 | 451 | 3.603532 | TCTGTAGACCATCTAACGACGT | 58.396 | 45.455 | 0.00 | 0.00 | 29.58 | 4.34 |
500 | 506 | 1.134907 | CAGGGCGGTATAACGAACAGT | 60.135 | 52.381 | 15.85 | 0.00 | 35.47 | 3.55 |
501 | 507 | 1.135527 | TCAGGGCGGTATAACGAACAG | 59.864 | 52.381 | 15.85 | 2.46 | 35.47 | 3.16 |
502 | 508 | 1.184431 | TCAGGGCGGTATAACGAACA | 58.816 | 50.000 | 15.85 | 0.00 | 35.47 | 3.18 |
503 | 509 | 2.521105 | ATCAGGGCGGTATAACGAAC | 57.479 | 50.000 | 15.85 | 5.51 | 35.47 | 3.95 |
504 | 510 | 2.431419 | TCAATCAGGGCGGTATAACGAA | 59.569 | 45.455 | 15.85 | 0.00 | 35.47 | 3.85 |
505 | 511 | 2.033372 | TCAATCAGGGCGGTATAACGA | 58.967 | 47.619 | 15.85 | 0.00 | 35.47 | 3.85 |
506 | 512 | 2.519377 | TCAATCAGGGCGGTATAACG | 57.481 | 50.000 | 5.62 | 5.62 | 0.00 | 3.18 |
507 | 513 | 6.170506 | TCATATTCAATCAGGGCGGTATAAC | 58.829 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
508 | 514 | 6.013725 | ACTCATATTCAATCAGGGCGGTATAA | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
509 | 515 | 5.483937 | ACTCATATTCAATCAGGGCGGTATA | 59.516 | 40.000 | 0.00 | 0.00 | 0.00 | 1.47 |
510 | 516 | 4.287067 | ACTCATATTCAATCAGGGCGGTAT | 59.713 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
511 | 517 | 3.646162 | ACTCATATTCAATCAGGGCGGTA | 59.354 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
512 | 518 | 2.439507 | ACTCATATTCAATCAGGGCGGT | 59.560 | 45.455 | 0.00 | 0.00 | 0.00 | 5.68 |
513 | 519 | 3.131709 | ACTCATATTCAATCAGGGCGG | 57.868 | 47.619 | 0.00 | 0.00 | 0.00 | 6.13 |
514 | 520 | 5.139435 | TCTACTCATATTCAATCAGGGCG | 57.861 | 43.478 | 0.00 | 0.00 | 0.00 | 6.13 |
515 | 521 | 5.809562 | CGATCTACTCATATTCAATCAGGGC | 59.190 | 44.000 | 0.00 | 0.00 | 0.00 | 5.19 |
516 | 522 | 7.163001 | TCGATCTACTCATATTCAATCAGGG | 57.837 | 40.000 | 0.00 | 0.00 | 0.00 | 4.45 |
517 | 523 | 9.138062 | CTTTCGATCTACTCATATTCAATCAGG | 57.862 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
518 | 524 | 9.689976 | ACTTTCGATCTACTCATATTCAATCAG | 57.310 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
552 | 558 | 9.878599 | CGATAATAAGTCACTCTTGTTTGTTTT | 57.121 | 29.630 | 0.00 | 0.00 | 38.23 | 2.43 |
553 | 559 | 9.052759 | ACGATAATAAGTCACTCTTGTTTGTTT | 57.947 | 29.630 | 0.00 | 0.00 | 38.23 | 2.83 |
554 | 560 | 8.603242 | ACGATAATAAGTCACTCTTGTTTGTT | 57.397 | 30.769 | 0.00 | 0.00 | 38.23 | 2.83 |
555 | 561 | 7.061905 | CGACGATAATAAGTCACTCTTGTTTGT | 59.938 | 37.037 | 0.00 | 0.00 | 38.23 | 2.83 |
556 | 562 | 7.272731 | TCGACGATAATAAGTCACTCTTGTTTG | 59.727 | 37.037 | 0.00 | 0.00 | 38.23 | 2.93 |
557 | 563 | 7.272948 | GTCGACGATAATAAGTCACTCTTGTTT | 59.727 | 37.037 | 0.00 | 0.00 | 38.23 | 2.83 |
558 | 564 | 6.746364 | GTCGACGATAATAAGTCACTCTTGTT | 59.254 | 38.462 | 0.00 | 0.00 | 39.92 | 2.83 |
559 | 565 | 6.256686 | GTCGACGATAATAAGTCACTCTTGT | 58.743 | 40.000 | 0.00 | 0.00 | 37.23 | 3.16 |
560 | 566 | 5.392874 | CGTCGACGATAATAAGTCACTCTTG | 59.607 | 44.000 | 33.35 | 0.00 | 43.02 | 3.02 |
561 | 567 | 5.064452 | ACGTCGACGATAATAAGTCACTCTT | 59.936 | 40.000 | 41.52 | 12.33 | 43.02 | 2.85 |
562 | 568 | 4.569966 | ACGTCGACGATAATAAGTCACTCT | 59.430 | 41.667 | 41.52 | 12.73 | 43.02 | 3.24 |
563 | 569 | 4.665292 | CACGTCGACGATAATAAGTCACTC | 59.335 | 45.833 | 41.52 | 0.00 | 43.02 | 3.51 |
564 | 570 | 4.330894 | TCACGTCGACGATAATAAGTCACT | 59.669 | 41.667 | 41.52 | 13.89 | 43.02 | 3.41 |
565 | 571 | 4.581493 | TCACGTCGACGATAATAAGTCAC | 58.419 | 43.478 | 41.52 | 0.00 | 43.02 | 3.67 |
566 | 572 | 4.863152 | TCACGTCGACGATAATAAGTCA | 57.137 | 40.909 | 41.52 | 2.11 | 43.02 | 3.41 |
567 | 573 | 4.142028 | CGTTCACGTCGACGATAATAAGTC | 59.858 | 45.833 | 41.52 | 20.05 | 41.53 | 3.01 |
568 | 574 | 4.024438 | CGTTCACGTCGACGATAATAAGT | 58.976 | 43.478 | 41.52 | 16.22 | 41.53 | 2.24 |
569 | 575 | 3.416674 | CCGTTCACGTCGACGATAATAAG | 59.583 | 47.826 | 41.52 | 24.91 | 41.53 | 1.73 |
570 | 576 | 3.353524 | CCGTTCACGTCGACGATAATAA | 58.646 | 45.455 | 41.52 | 23.38 | 41.53 | 1.40 |
571 | 577 | 2.850631 | GCCGTTCACGTCGACGATAATA | 60.851 | 50.000 | 41.52 | 19.36 | 41.53 | 0.98 |
572 | 578 | 1.818850 | CCGTTCACGTCGACGATAAT | 58.181 | 50.000 | 41.52 | 19.00 | 41.53 | 1.28 |
573 | 579 | 0.794229 | GCCGTTCACGTCGACGATAA | 60.794 | 55.000 | 41.52 | 29.54 | 41.53 | 1.75 |
582 | 588 | 0.246635 | AGATTGCTAGCCGTTCACGT | 59.753 | 50.000 | 13.29 | 0.00 | 37.74 | 4.49 |
584 | 590 | 3.259064 | TGTAAGATTGCTAGCCGTTCAC | 58.741 | 45.455 | 13.29 | 4.01 | 0.00 | 3.18 |
606 | 612 | 5.404946 | CCACACATTCTTGATTTGATGGTC | 58.595 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
651 | 658 | 3.425094 | CCGTTGAACGAACTGTGTCAAAA | 60.425 | 43.478 | 20.47 | 0.00 | 46.05 | 2.44 |
654 | 662 | 1.135053 | TCCGTTGAACGAACTGTGTCA | 60.135 | 47.619 | 20.47 | 0.00 | 46.05 | 3.58 |
672 | 680 | 6.652053 | TCCTAGTACTTGTCTTCTAGAGTCC | 58.348 | 44.000 | 0.00 | 0.00 | 33.81 | 3.85 |
677 | 685 | 5.883673 | AGTGCTCCTAGTACTTGTCTTCTAG | 59.116 | 44.000 | 0.00 | 0.00 | 37.96 | 2.43 |
680 | 688 | 5.447548 | CGTAGTGCTCCTAGTACTTGTCTTC | 60.448 | 48.000 | 0.00 | 0.00 | 37.96 | 2.87 |
682 | 690 | 3.940221 | CGTAGTGCTCCTAGTACTTGTCT | 59.060 | 47.826 | 0.00 | 0.00 | 37.96 | 3.41 |
690 | 698 | 1.134580 | TCTACGCGTAGTGCTCCTAGT | 60.135 | 52.381 | 37.32 | 4.20 | 45.12 | 2.57 |
691 | 699 | 1.579698 | TCTACGCGTAGTGCTCCTAG | 58.420 | 55.000 | 37.32 | 18.23 | 45.12 | 3.02 |
692 | 700 | 1.667724 | GTTCTACGCGTAGTGCTCCTA | 59.332 | 52.381 | 37.32 | 19.49 | 45.12 | 2.94 |
704 | 712 | 1.202268 | ACTCGCCATGTAGTTCTACGC | 60.202 | 52.381 | 5.66 | 2.91 | 0.00 | 4.42 |
705 | 713 | 2.451132 | CACTCGCCATGTAGTTCTACG | 58.549 | 52.381 | 5.66 | 0.00 | 0.00 | 3.51 |
734 | 742 | 5.246429 | ACTTCTCAAGTTTCTCGGAACCTAT | 59.754 | 40.000 | 0.00 | 0.00 | 39.04 | 2.57 |
745 | 754 | 8.687824 | TTTGTTTGATTGACTTCTCAAGTTTC | 57.312 | 30.769 | 0.00 | 0.00 | 43.03 | 2.78 |
769 | 778 | 4.143284 | GCAAAACAAAAGTCGTCCGTTTTT | 60.143 | 37.500 | 0.00 | 0.00 | 37.61 | 1.94 |
770 | 779 | 3.365520 | GCAAAACAAAAGTCGTCCGTTTT | 59.634 | 39.130 | 0.00 | 0.00 | 39.64 | 2.43 |
771 | 780 | 2.918600 | GCAAAACAAAAGTCGTCCGTTT | 59.081 | 40.909 | 0.00 | 0.00 | 0.00 | 3.60 |
772 | 781 | 2.162809 | AGCAAAACAAAAGTCGTCCGTT | 59.837 | 40.909 | 0.00 | 0.00 | 0.00 | 4.44 |
773 | 782 | 1.741145 | AGCAAAACAAAAGTCGTCCGT | 59.259 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
774 | 783 | 2.468532 | AGCAAAACAAAAGTCGTCCG | 57.531 | 45.000 | 0.00 | 0.00 | 0.00 | 4.79 |
775 | 784 | 7.806014 | TGATTATTAGCAAAACAAAAGTCGTCC | 59.194 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
776 | 785 | 8.627428 | GTGATTATTAGCAAAACAAAAGTCGTC | 58.373 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
777 | 786 | 8.132362 | TGTGATTATTAGCAAAACAAAAGTCGT | 58.868 | 29.630 | 0.00 | 0.00 | 0.00 | 4.34 |
778 | 787 | 8.500837 | TGTGATTATTAGCAAAACAAAAGTCG | 57.499 | 30.769 | 0.00 | 0.00 | 0.00 | 4.18 |
785 | 794 | 9.646427 | GGGTTAAATGTGATTATTAGCAAAACA | 57.354 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
786 | 795 | 9.093970 | GGGGTTAAATGTGATTATTAGCAAAAC | 57.906 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
787 | 796 | 9.041354 | AGGGGTTAAATGTGATTATTAGCAAAA | 57.959 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
788 | 797 | 8.602472 | AGGGGTTAAATGTGATTATTAGCAAA | 57.398 | 30.769 | 0.00 | 0.00 | 0.00 | 3.68 |
814 | 823 | 4.947388 | GGGTGCAATTTAGAGACATTACCA | 59.053 | 41.667 | 0.00 | 0.00 | 0.00 | 3.25 |
815 | 824 | 4.338400 | GGGGTGCAATTTAGAGACATTACC | 59.662 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
839 | 859 | 1.447489 | CTTCTCTCTGCAGCCGGTG | 60.447 | 63.158 | 9.47 | 0.89 | 0.00 | 4.94 |
840 | 860 | 2.654079 | CCTTCTCTCTGCAGCCGGT | 61.654 | 63.158 | 9.47 | 0.00 | 0.00 | 5.28 |
842 | 862 | 2.511145 | GCCTTCTCTCTGCAGCCG | 60.511 | 66.667 | 9.47 | 2.34 | 0.00 | 5.52 |
844 | 864 | 1.744741 | GGTGCCTTCTCTCTGCAGC | 60.745 | 63.158 | 9.47 | 0.00 | 44.83 | 5.25 |
954 | 980 | 2.179517 | GAGCTCCACTGGTCGTCG | 59.820 | 66.667 | 0.87 | 0.00 | 0.00 | 5.12 |
965 | 1016 | 1.416030 | GGAGGAGAAAGATGGAGCTCC | 59.584 | 57.143 | 26.78 | 26.78 | 45.70 | 4.70 |
992 | 1043 | 1.452833 | GAGGAGTCCATTGCTGGCC | 60.453 | 63.158 | 12.86 | 0.00 | 42.80 | 5.36 |
1102 | 1191 | 1.809547 | GAAACAGAGGAGCAAGAAGGC | 59.190 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
1110 | 1199 | 2.037772 | TGGAAGTGAGAAACAGAGGAGC | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1111 | 1200 | 4.252073 | CATGGAAGTGAGAAACAGAGGAG | 58.748 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
1172 | 1264 | 6.421801 | AGAAAAAGTCGGCAAATTCAAATCAG | 59.578 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
1188 | 1280 | 4.976116 | CGGGACAACAAATCAGAAAAAGTC | 59.024 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1190 | 1282 | 4.932146 | ACGGGACAACAAATCAGAAAAAG | 58.068 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
1194 | 1286 | 3.490078 | GCAAACGGGACAACAAATCAGAA | 60.490 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
1204 | 1296 | 1.034838 | ACAGCAAGCAAACGGGACAA | 61.035 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1640 | 1835 | 0.325933 | TCCTTGTGTGGCATGAGAGG | 59.674 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1655 | 1850 | 1.590932 | GCGCATGTCATCATCTCCTT | 58.409 | 50.000 | 0.30 | 0.00 | 31.15 | 3.36 |
1658 | 1853 | 2.445565 | TAGGCGCATGTCATCATCTC | 57.554 | 50.000 | 10.83 | 0.00 | 31.15 | 2.75 |
1702 | 1911 | 1.112459 | GTTCAAAAGCACGCACGAAG | 58.888 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1703 | 1912 | 0.587737 | CGTTCAAAAGCACGCACGAA | 60.588 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1704 | 1913 | 1.011684 | CGTTCAAAAGCACGCACGA | 60.012 | 52.632 | 0.00 | 0.00 | 0.00 | 4.35 |
1705 | 1914 | 2.003443 | CCGTTCAAAAGCACGCACG | 61.003 | 57.895 | 0.00 | 0.00 | 34.98 | 5.34 |
1708 | 1917 | 2.010817 | CTGCCGTTCAAAAGCACGC | 61.011 | 57.895 | 0.00 | 0.00 | 34.98 | 5.34 |
1893 | 2115 | 1.379176 | TGTCCGAGCCCTGAGAGAG | 60.379 | 63.158 | 0.00 | 0.00 | 0.00 | 3.20 |
1895 | 2117 | 2.888863 | GTGTCCGAGCCCTGAGAG | 59.111 | 66.667 | 0.00 | 0.00 | 0.00 | 3.20 |
1935 | 2157 | 3.494048 | CCTGGAGTAAATGCTGGCTCTAG | 60.494 | 52.174 | 0.00 | 0.00 | 36.66 | 2.43 |
1961 | 2183 | 5.977635 | TGAGGTTGGACAATATACAGAGTG | 58.022 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2000 | 2222 | 2.553079 | TGACCAAAACTGTTTGCGAC | 57.447 | 45.000 | 6.53 | 1.63 | 42.44 | 5.19 |
2014 | 2236 | 3.495983 | CGGTATTATCCCAGCATTGACCA | 60.496 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
2015 | 2237 | 3.074412 | CGGTATTATCCCAGCATTGACC | 58.926 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2130 | 2352 | 5.407407 | TTTCTCCTCGCTTCATCTTAACT | 57.593 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2144 | 2380 | 5.047802 | TCCAAATGTTCATGCTTTTCTCCTC | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2255 | 2495 | 4.192429 | ACAAAGCAGCTTGTTGTCTTTT | 57.808 | 36.364 | 8.88 | 0.00 | 36.05 | 2.27 |
2312 | 2552 | 1.295423 | GTCGCCTGCTACTCCCAAA | 59.705 | 57.895 | 0.00 | 0.00 | 0.00 | 3.28 |
2326 | 2566 | 5.746721 | GGTCCAATATTTTAAATGTGGTCGC | 59.253 | 40.000 | 16.54 | 10.83 | 0.00 | 5.19 |
2366 | 2606 | 6.285224 | TGATGAAGACCGAAAACACTCTAAA | 58.715 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2392 | 2635 | 7.761409 | TCAAGCAACGAAGCTGATTATAAATT | 58.239 | 30.769 | 7.10 | 0.00 | 45.89 | 1.82 |
2408 | 2651 | 9.554724 | ACTAATACAATTAACATTCAAGCAACG | 57.445 | 29.630 | 0.00 | 0.00 | 0.00 | 4.10 |
2432 | 2675 | 9.990868 | ATGTTCCTCCTTTGGTAAATATTAACT | 57.009 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2445 | 2743 | 4.574013 | GTCAGCTGATATGTTCCTCCTTTG | 59.426 | 45.833 | 21.47 | 0.00 | 0.00 | 2.77 |
2450 | 2748 | 3.494048 | CCTGGTCAGCTGATATGTTCCTC | 60.494 | 52.174 | 21.47 | 2.96 | 0.00 | 3.71 |
2646 | 3000 | 5.299531 | GGGAATGGAGAAATTAGTAAGCACC | 59.700 | 44.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2651 | 3013 | 8.893563 | AACATTGGGAATGGAGAAATTAGTAA | 57.106 | 30.769 | 0.00 | 0.00 | 43.21 | 2.24 |
2846 | 3215 | 6.420604 | CACAAAACATGAAGAACCAATGGTAC | 59.579 | 38.462 | 4.88 | 0.00 | 33.12 | 3.34 |
2868 | 3238 | 7.387673 | CCTGTGAAGAGAAACATGTTATACACA | 59.612 | 37.037 | 12.39 | 18.26 | 40.71 | 3.72 |
3195 | 3573 | 7.595130 | AGCGAAGACAGGTCAAATTTTAATTTC | 59.405 | 33.333 | 1.84 | 0.00 | 36.52 | 2.17 |
3219 | 3597 | 0.952984 | AGAAGAGTGCGCCAAGAAGC | 60.953 | 55.000 | 4.18 | 0.00 | 0.00 | 3.86 |
3595 | 3996 | 7.307694 | TGCTGTAATTATTTGCTGTGAAGAAG | 58.692 | 34.615 | 8.16 | 0.00 | 0.00 | 2.85 |
3706 | 4107 | 0.317160 | TTAGTGACAGACCTGTGGCG | 59.683 | 55.000 | 7.47 | 0.00 | 45.05 | 5.69 |
3894 | 4297 | 9.612620 | GAGTTGTCAAACATAAATAAGGAAGTG | 57.387 | 33.333 | 0.00 | 0.00 | 38.88 | 3.16 |
3899 | 4302 | 9.965824 | AAACAGAGTTGTCAAACATAAATAAGG | 57.034 | 29.630 | 0.00 | 0.00 | 38.88 | 2.69 |
3926 | 4679 | 6.675026 | ACATAACTTGTCATGCATATGATGC | 58.325 | 36.000 | 6.97 | 4.46 | 45.78 | 3.91 |
4379 | 5145 | 6.096705 | CACATATATTGTCAGGGCCTTTTCAA | 59.903 | 38.462 | 1.32 | 10.28 | 36.00 | 2.69 |
4383 | 5149 | 5.129368 | ACACATATATTGTCAGGGCCTTT | 57.871 | 39.130 | 1.32 | 0.00 | 36.00 | 3.11 |
4861 | 5634 | 7.438459 | GTGCACGGAGAGTTATACTGAAAATAT | 59.562 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
4869 | 5655 | 3.090037 | AGTGTGCACGGAGAGTTATACT | 58.910 | 45.455 | 13.13 | 2.73 | 36.20 | 2.12 |
5031 | 5817 | 7.124573 | ACAATAGATACTGGTGCAGACATAA | 57.875 | 36.000 | 0.00 | 0.00 | 35.18 | 1.90 |
5312 | 6139 | 4.844085 | TGGAAAGAGAACAGGAATCAGGTA | 59.156 | 41.667 | 0.00 | 0.00 | 0.00 | 3.08 |
5327 | 6154 | 7.558161 | TTATATTCTGTGCATGTGGAAAGAG | 57.442 | 36.000 | 0.00 | 0.00 | 31.20 | 2.85 |
5329 | 6156 | 7.013559 | TCCATTATATTCTGTGCATGTGGAAAG | 59.986 | 37.037 | 0.00 | 0.00 | 0.00 | 2.62 |
5336 | 6165 | 7.027760 | GCAGATTCCATTATATTCTGTGCATG | 58.972 | 38.462 | 0.00 | 0.00 | 36.91 | 4.06 |
5430 | 6261 | 5.063880 | ACACTCCACAGGTTATTTCTTGAC | 58.936 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
5533 | 6364 | 8.668510 | AACATACTTGATGATTCACAGTATCC | 57.331 | 34.615 | 10.17 | 0.00 | 39.06 | 2.59 |
5686 | 6523 | 7.283127 | ACACAAATTGTAGTTCTGTCATTCTGT | 59.717 | 33.333 | 0.00 | 0.00 | 36.32 | 3.41 |
5687 | 6524 | 7.642669 | ACACAAATTGTAGTTCTGTCATTCTG | 58.357 | 34.615 | 0.00 | 0.00 | 36.32 | 3.02 |
5688 | 6525 | 7.807977 | ACACAAATTGTAGTTCTGTCATTCT | 57.192 | 32.000 | 0.00 | 0.00 | 36.32 | 2.40 |
5689 | 6526 | 9.382244 | GTTACACAAATTGTAGTTCTGTCATTC | 57.618 | 33.333 | 0.00 | 0.00 | 41.86 | 2.67 |
5690 | 6527 | 9.120538 | AGTTACACAAATTGTAGTTCTGTCATT | 57.879 | 29.630 | 0.00 | 0.00 | 41.86 | 2.57 |
5691 | 6528 | 8.559536 | CAGTTACACAAATTGTAGTTCTGTCAT | 58.440 | 33.333 | 0.00 | 0.00 | 41.86 | 3.06 |
5692 | 6529 | 7.551262 | ACAGTTACACAAATTGTAGTTCTGTCA | 59.449 | 33.333 | 19.19 | 0.77 | 41.86 | 3.58 |
5697 | 6534 | 8.504005 | AGCATACAGTTACACAAATTGTAGTTC | 58.496 | 33.333 | 0.00 | 0.00 | 41.77 | 3.01 |
5721 | 7025 | 9.931210 | AATATCGCAAGTGTTTAATAAAGTAGC | 57.069 | 29.630 | 0.00 | 0.00 | 39.48 | 3.58 |
5742 | 7171 | 5.975939 | GCAGAACATTGCAGAGGAAAATATC | 59.024 | 40.000 | 0.00 | 0.00 | 43.53 | 1.63 |
5771 | 7200 | 0.679640 | TGCCCCCGTATCTTGCTTTG | 60.680 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
5819 | 7248 | 1.980765 | TCAACCTCCTGCTCATGTTCT | 59.019 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
6141 | 7579 | 5.640783 | ACACTAACCAAAACTTCCGTATAGC | 59.359 | 40.000 | 0.00 | 0.00 | 0.00 | 2.97 |
6144 | 7582 | 4.758165 | CCACACTAACCAAAACTTCCGTAT | 59.242 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
6147 | 7585 | 2.287368 | GCCACACTAACCAAAACTTCCG | 60.287 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6148 | 7586 | 2.691011 | TGCCACACTAACCAAAACTTCC | 59.309 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
6149 | 7587 | 3.380320 | AGTGCCACACTAACCAAAACTTC | 59.620 | 43.478 | 0.00 | 0.00 | 43.46 | 3.01 |
6172 | 7610 | 9.810870 | TTTACACAATACTAAATTTACACCCCT | 57.189 | 29.630 | 0.00 | 0.00 | 0.00 | 4.79 |
6174 | 7612 | 9.563898 | GCTTTACACAATACTAAATTTACACCC | 57.436 | 33.333 | 0.00 | 0.00 | 0.00 | 4.61 |
6209 | 7647 | 5.609423 | TGCCAGCATCACAAGTAAAATTTT | 58.391 | 33.333 | 8.75 | 8.75 | 0.00 | 1.82 |
6210 | 7648 | 5.212532 | TGCCAGCATCACAAGTAAAATTT | 57.787 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
6213 | 7651 | 4.870123 | ATTGCCAGCATCACAAGTAAAA | 57.130 | 36.364 | 0.00 | 0.00 | 0.00 | 1.52 |
6409 | 7848 | 6.945218 | TGGGGGAATTTCATATTTTGTTCAG | 58.055 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
6530 | 7986 | 9.114952 | GGGAATTCAAATCTTGTTTGGTTTAAA | 57.885 | 29.630 | 7.93 | 0.00 | 0.00 | 1.52 |
6532 | 7988 | 7.796054 | TGGGAATTCAAATCTTGTTTGGTTTA | 58.204 | 30.769 | 7.93 | 0.00 | 0.00 | 2.01 |
6654 | 8154 | 6.572519 | TCTCAAAGTTCCTGAACCATTTTTG | 58.427 | 36.000 | 6.41 | 10.17 | 42.06 | 2.44 |
6731 | 8231 | 3.256383 | TGTTGTTGAGGGATGCAGAAATG | 59.744 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
6732 | 8232 | 3.499338 | TGTTGTTGAGGGATGCAGAAAT | 58.501 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
6772 | 8272 | 1.940613 | GCACGTTGAGGAAAACTGTCT | 59.059 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
6809 | 8309 | 1.894756 | CTGCAAAACCGTTCCCCGA | 60.895 | 57.895 | 0.00 | 0.00 | 39.56 | 5.14 |
6909 | 8412 | 6.474140 | AACCGAAAACAAACCCTAGAAAAT | 57.526 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
6913 | 8416 | 5.195185 | AGAAAACCGAAAACAAACCCTAGA | 58.805 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
6916 | 8419 | 3.764972 | TGAGAAAACCGAAAACAAACCCT | 59.235 | 39.130 | 0.00 | 0.00 | 0.00 | 4.34 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.