Multiple sequence alignment - TraesCS1A01G342300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G342300 chr1A 100.000 2567 0 0 1 2567 531512156 531514722 0.000000e+00 4741.0
1 TraesCS1A01G342300 chr1A 93.377 1676 78 18 903 2563 531561890 531563547 0.000000e+00 2449.0
2 TraesCS1A01G342300 chr1A 90.650 1401 78 29 980 2362 531367009 531368374 0.000000e+00 1812.0
3 TraesCS1A01G342300 chr1A 92.135 623 44 5 1 620 549501889 549502509 0.000000e+00 874.0
4 TraesCS1A01G342300 chr1A 100.000 392 0 0 2696 3087 531514851 531515242 0.000000e+00 725.0
5 TraesCS1A01G342300 chr1A 94.079 152 8 1 2696 2846 531564838 531564989 2.390000e-56 230.0
6 TraesCS1A01G342300 chr1A 93.421 152 9 1 2696 2846 531568586 531568737 1.110000e-54 224.0
7 TraesCS1A01G342300 chr1A 93.421 152 9 1 2696 2846 531573598 531573749 1.110000e-54 224.0
8 TraesCS1A01G342300 chr1A 93.421 152 9 1 2696 2846 531574849 531575000 1.110000e-54 224.0
9 TraesCS1A01G342300 chr1A 93.421 152 9 1 2696 2846 531579875 531580026 1.110000e-54 224.0
10 TraesCS1A01G342300 chr1A 89.655 174 15 1 2867 3037 531514344 531514517 5.180000e-53 219.0
11 TraesCS1A01G342300 chr1A 89.655 174 15 1 2189 2362 531515022 531515192 5.180000e-53 219.0
12 TraesCS1A01G342300 chr1A 92.763 152 10 1 2696 2846 531566086 531566237 5.180000e-53 219.0
13 TraesCS1A01G342300 chr1A 92.763 152 10 1 2696 2846 531569844 531569995 5.180000e-53 219.0
14 TraesCS1A01G342300 chr1A 92.763 152 10 1 2696 2846 531572345 531572496 5.180000e-53 219.0
15 TraesCS1A01G342300 chr1A 92.763 152 10 1 2696 2846 531582401 531582552 5.180000e-53 219.0
16 TraesCS1A01G342300 chr1A 89.205 176 13 3 2867 3037 531563172 531563346 6.700000e-52 215.0
17 TraesCS1A01G342300 chr1A 87.766 188 5 8 2865 3051 531368218 531368388 1.450000e-48 204.0
18 TraesCS1A01G342300 chr1A 87.730 163 14 2 755 911 531502342 531502504 5.260000e-43 185.0
19 TraesCS1A01G342300 chr1B 90.205 1613 101 21 978 2567 584762016 584763594 0.000000e+00 2050.0
20 TraesCS1A01G342300 chr1B 92.888 1392 64 12 978 2362 584779316 584780679 0.000000e+00 1989.0
21 TraesCS1A01G342300 chr1B 92.616 1395 65 14 978 2362 584798105 584799471 0.000000e+00 1971.0
22 TraesCS1A01G342300 chr1B 91.504 1436 90 14 978 2392 584620416 584621840 0.000000e+00 1947.0
23 TraesCS1A01G342300 chr1B 91.365 1436 92 14 978 2392 584575055 584576479 0.000000e+00 1936.0
24 TraesCS1A01G342300 chr1B 90.386 1425 107 23 978 2391 584654228 584655633 0.000000e+00 1845.0
25 TraesCS1A01G342300 chr1B 90.799 1402 91 21 978 2362 584603794 584605174 0.000000e+00 1842.0
26 TraesCS1A01G342300 chr1B 90.717 851 55 12 1520 2362 584566230 584567064 0.000000e+00 1112.0
27 TraesCS1A01G342300 chr1B 91.304 230 11 5 2865 3087 584566894 584567121 3.870000e-79 305.0
28 TraesCS1A01G342300 chr1B 90.870 230 12 5 2865 3087 584605004 584605231 1.800000e-77 300.0
29 TraesCS1A01G342300 chr1B 89.787 235 9 9 2865 3085 584621629 584621862 1.400000e-73 287.0
30 TraesCS1A01G342300 chr1B 89.610 231 15 6 2865 3087 584655429 584655658 5.040000e-73 285.0
31 TraesCS1A01G342300 chr1B 89.362 235 10 9 2865 3085 584576268 584576501 6.520000e-72 281.0
32 TraesCS1A01G342300 chr1B 88.596 228 15 5 755 978 584761737 584761957 1.820000e-67 267.0
33 TraesCS1A01G342300 chr1B 88.596 228 15 5 755 978 584779037 584779257 1.820000e-67 267.0
34 TraesCS1A01G342300 chr1B 93.103 174 9 2 2865 3037 584780508 584780679 5.110000e-63 252.0
35 TraesCS1A01G342300 chr1B 92.529 174 10 2 2865 3037 584799300 584799471 2.380000e-61 246.0
36 TraesCS1A01G342300 chr1B 81.699 153 19 4 2329 2478 584904218 584904364 5.410000e-23 119.0
37 TraesCS1A01G342300 chr1D 90.482 1576 106 21 978 2523 433092618 433094179 0.000000e+00 2039.0
38 TraesCS1A01G342300 chr1D 91.603 1429 76 24 978 2392 433060558 433061956 0.000000e+00 1934.0
39 TraesCS1A01G342300 chr1D 87.912 1092 81 16 1455 2523 433143196 433144259 0.000000e+00 1238.0
40 TraesCS1A01G342300 chr1D 84.708 667 57 26 620 1265 433143148 433142506 2.610000e-175 625.0
41 TraesCS1A01G342300 chr1D 91.775 231 11 5 2865 3087 433061750 433061980 6.430000e-82 315.0
42 TraesCS1A01G342300 chr1D 87.013 231 16 8 755 978 433092344 433092567 6.610000e-62 248.0
43 TraesCS1A01G342300 chr1D 84.672 137 20 1 2712 2847 296894507 296894371 5.370000e-28 135.0
44 TraesCS1A01G342300 chr1D 79.646 113 22 1 2424 2535 425032224 425032112 2.550000e-11 80.5
45 TraesCS1A01G342300 chr3B 84.035 1710 152 67 684 2319 647944252 647942590 0.000000e+00 1533.0
46 TraesCS1A01G342300 chr7A 93.005 629 41 3 1 627 726512666 726513293 0.000000e+00 915.0
47 TraesCS1A01G342300 chr7A 92.616 623 43 3 1 620 33493488 33494110 0.000000e+00 893.0
48 TraesCS1A01G342300 chr6A 93.053 619 42 1 3 620 136933889 136933271 0.000000e+00 904.0
49 TraesCS1A01G342300 chr6A 81.213 676 82 23 852 1513 616689241 616688597 1.280000e-138 503.0
50 TraesCS1A01G342300 chr2A 92.937 623 41 3 3 623 408785275 408785896 0.000000e+00 904.0
51 TraesCS1A01G342300 chr5A 92.960 625 35 6 1 622 590687377 590686759 0.000000e+00 902.0
52 TraesCS1A01G342300 chr5A 92.788 624 41 3 1 622 433386229 433385608 0.000000e+00 900.0
53 TraesCS1A01G342300 chr5D 92.575 633 37 9 1 629 467426913 467427539 0.000000e+00 900.0
54 TraesCS1A01G342300 chr5D 88.060 134 15 1 2715 2847 7616613 7616480 1.150000e-34 158.0
55 TraesCS1A01G342300 chr5D 87.023 131 16 1 2715 2844 218210911 218211041 2.480000e-31 147.0
56 TraesCS1A01G342300 chr5D 83.465 127 20 1 2718 2843 50964693 50964819 1.940000e-22 117.0
57 TraesCS1A01G342300 chr3A 92.332 626 45 3 1 624 709783858 709783234 0.000000e+00 887.0
58 TraesCS1A01G342300 chr4D 86.154 130 17 1 2715 2843 327723697 327723826 4.150000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G342300 chr1A 531512156 531515242 3086 False 1476.000000 4741 94.827500 1 3087 4 chr1A.!!$F4 3086
1 TraesCS1A01G342300 chr1A 531367009 531368388 1379 False 1008.000000 1812 89.208000 980 3051 2 chr1A.!!$F3 2071
2 TraesCS1A01G342300 chr1A 549501889 549502509 620 False 874.000000 874 92.135000 1 620 1 chr1A.!!$F2 619
3 TraesCS1A01G342300 chr1A 531561890 531575000 13110 False 469.222222 2449 92.801444 903 3037 9 chr1A.!!$F5 2134
4 TraesCS1A01G342300 chr1A 531579875 531582552 2677 False 221.500000 224 93.092000 2696 2846 2 chr1A.!!$F6 150
5 TraesCS1A01G342300 chr1B 584761737 584763594 1857 False 1158.500000 2050 89.400500 755 2567 2 chr1B.!!$F7 1812
6 TraesCS1A01G342300 chr1B 584620416 584621862 1446 False 1117.000000 1947 90.645500 978 3085 2 chr1B.!!$F5 2107
7 TraesCS1A01G342300 chr1B 584575055 584576501 1446 False 1108.500000 1936 90.363500 978 3085 2 chr1B.!!$F3 2107
8 TraesCS1A01G342300 chr1B 584798105 584799471 1366 False 1108.500000 1971 92.572500 978 3037 2 chr1B.!!$F9 2059
9 TraesCS1A01G342300 chr1B 584603794 584605231 1437 False 1071.000000 1842 90.834500 978 3087 2 chr1B.!!$F4 2109
10 TraesCS1A01G342300 chr1B 584654228 584655658 1430 False 1065.000000 1845 89.998000 978 3087 2 chr1B.!!$F6 2109
11 TraesCS1A01G342300 chr1B 584779037 584780679 1642 False 836.000000 1989 91.529000 755 3037 3 chr1B.!!$F8 2282
12 TraesCS1A01G342300 chr1B 584566230 584567121 891 False 708.500000 1112 91.010500 1520 3087 2 chr1B.!!$F2 1567
13 TraesCS1A01G342300 chr1D 433143196 433144259 1063 False 1238.000000 1238 87.912000 1455 2523 1 chr1D.!!$F1 1068
14 TraesCS1A01G342300 chr1D 433092344 433094179 1835 False 1143.500000 2039 88.747500 755 2523 2 chr1D.!!$F3 1768
15 TraesCS1A01G342300 chr1D 433060558 433061980 1422 False 1124.500000 1934 91.689000 978 3087 2 chr1D.!!$F2 2109
16 TraesCS1A01G342300 chr1D 433142506 433143148 642 True 625.000000 625 84.708000 620 1265 1 chr1D.!!$R3 645
17 TraesCS1A01G342300 chr3B 647942590 647944252 1662 True 1533.000000 1533 84.035000 684 2319 1 chr3B.!!$R1 1635
18 TraesCS1A01G342300 chr7A 726512666 726513293 627 False 915.000000 915 93.005000 1 627 1 chr7A.!!$F2 626
19 TraesCS1A01G342300 chr7A 33493488 33494110 622 False 893.000000 893 92.616000 1 620 1 chr7A.!!$F1 619
20 TraesCS1A01G342300 chr6A 136933271 136933889 618 True 904.000000 904 93.053000 3 620 1 chr6A.!!$R1 617
21 TraesCS1A01G342300 chr6A 616688597 616689241 644 True 503.000000 503 81.213000 852 1513 1 chr6A.!!$R2 661
22 TraesCS1A01G342300 chr2A 408785275 408785896 621 False 904.000000 904 92.937000 3 623 1 chr2A.!!$F1 620
23 TraesCS1A01G342300 chr5A 590686759 590687377 618 True 902.000000 902 92.960000 1 622 1 chr5A.!!$R2 621
24 TraesCS1A01G342300 chr5A 433385608 433386229 621 True 900.000000 900 92.788000 1 622 1 chr5A.!!$R1 621
25 TraesCS1A01G342300 chr5D 467426913 467427539 626 False 900.000000 900 92.575000 1 629 1 chr5D.!!$F3 628
26 TraesCS1A01G342300 chr3A 709783234 709783858 624 True 887.000000 887 92.332000 1 624 1 chr3A.!!$R1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 505 0.041090 AAAATGGGCCGAGAATGGGT 59.959 50.0 0.00 0.0 35.77 4.51 F
616 623 0.172578 GGGTCGCCCATTAAAGTTGC 59.827 55.0 9.72 0.0 44.65 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1639 1783 0.321564 CGTTGAGGCCCTTGATGACA 60.322 55.0 0.00 0.00 0.00 3.58 R
2505 2807 0.386352 TCAGTAGCGAAACCGTGTCG 60.386 55.0 6.75 6.75 41.46 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 4.648626 TCCGACGAGGGTGACGGT 62.649 66.667 0.00 0.00 45.31 4.83
325 329 2.033448 AGTCGCCGGCAAAATGGA 59.967 55.556 28.98 11.71 0.00 3.41
428 435 3.480133 CCCGGGGGCAGAAGTAGG 61.480 72.222 14.71 0.00 0.00 3.18
429 436 4.176752 CCGGGGGCAGAAGTAGGC 62.177 72.222 0.00 0.00 0.00 3.93
430 437 4.530857 CGGGGGCAGAAGTAGGCG 62.531 72.222 0.00 0.00 0.00 5.52
431 438 3.081409 GGGGGCAGAAGTAGGCGA 61.081 66.667 0.00 0.00 0.00 5.54
432 439 2.501610 GGGGCAGAAGTAGGCGAG 59.498 66.667 0.00 0.00 0.00 5.03
433 440 2.202946 GGGCAGAAGTAGGCGAGC 60.203 66.667 0.00 0.00 0.00 5.03
434 441 2.579201 GGCAGAAGTAGGCGAGCA 59.421 61.111 0.00 0.00 0.00 4.26
435 442 1.079127 GGCAGAAGTAGGCGAGCAA 60.079 57.895 0.00 0.00 0.00 3.91
436 443 1.086634 GGCAGAAGTAGGCGAGCAAG 61.087 60.000 0.00 0.00 0.00 4.01
437 444 1.700600 GCAGAAGTAGGCGAGCAAGC 61.701 60.000 0.00 0.00 0.00 4.01
438 445 1.153745 AGAAGTAGGCGAGCAAGCG 60.154 57.895 0.00 0.00 38.18 4.68
475 482 4.520846 CGCCGACGCAAATCAGGC 62.521 66.667 0.00 0.00 44.00 4.85
476 483 3.127533 GCCGACGCAAATCAGGCT 61.128 61.111 0.00 0.00 44.06 4.58
477 484 3.093278 CCGACGCAAATCAGGCTC 58.907 61.111 0.00 0.00 0.00 4.70
478 485 1.741401 CCGACGCAAATCAGGCTCA 60.741 57.895 0.00 0.00 0.00 4.26
479 486 1.298157 CCGACGCAAATCAGGCTCAA 61.298 55.000 0.00 0.00 0.00 3.02
480 487 0.516877 CGACGCAAATCAGGCTCAAA 59.483 50.000 0.00 0.00 0.00 2.69
481 488 1.069296 CGACGCAAATCAGGCTCAAAA 60.069 47.619 0.00 0.00 0.00 2.44
482 489 2.604373 CGACGCAAATCAGGCTCAAAAA 60.604 45.455 0.00 0.00 0.00 1.94
483 490 3.578688 GACGCAAATCAGGCTCAAAAAT 58.421 40.909 0.00 0.00 0.00 1.82
484 491 3.319755 ACGCAAATCAGGCTCAAAAATG 58.680 40.909 0.00 0.00 0.00 2.32
485 492 2.669434 CGCAAATCAGGCTCAAAAATGG 59.331 45.455 0.00 0.00 0.00 3.16
486 493 3.004862 GCAAATCAGGCTCAAAAATGGG 58.995 45.455 0.00 0.00 0.00 4.00
487 494 3.004862 CAAATCAGGCTCAAAAATGGGC 58.995 45.455 0.00 0.00 0.00 5.36
488 495 1.197812 ATCAGGCTCAAAAATGGGCC 58.802 50.000 11.78 11.78 44.38 5.80
490 497 3.693411 GGCTCAAAAATGGGCCGA 58.307 55.556 3.61 0.00 35.08 5.54
491 498 1.512694 GGCTCAAAAATGGGCCGAG 59.487 57.895 3.61 0.00 35.08 4.63
492 499 0.965363 GGCTCAAAAATGGGCCGAGA 60.965 55.000 3.61 0.00 35.08 4.04
493 500 0.887933 GCTCAAAAATGGGCCGAGAA 59.112 50.000 7.90 0.00 0.00 2.87
494 501 1.478105 GCTCAAAAATGGGCCGAGAAT 59.522 47.619 7.90 0.00 0.00 2.40
495 502 2.736400 GCTCAAAAATGGGCCGAGAATG 60.736 50.000 7.90 0.61 0.00 2.67
496 503 1.824230 TCAAAAATGGGCCGAGAATGG 59.176 47.619 0.00 0.00 0.00 3.16
497 504 1.134729 CAAAAATGGGCCGAGAATGGG 60.135 52.381 0.00 0.00 36.85 4.00
498 505 0.041090 AAAATGGGCCGAGAATGGGT 59.959 50.000 0.00 0.00 35.77 4.51
499 506 0.395724 AAATGGGCCGAGAATGGGTC 60.396 55.000 0.00 0.00 38.16 4.46
500 507 2.608970 AATGGGCCGAGAATGGGTCG 62.609 60.000 0.00 0.00 40.76 4.79
515 522 4.965348 TCGCCCGCGGACGAAAAA 62.965 61.111 34.30 11.97 43.93 1.94
516 523 4.729798 CGCCCGCGGACGAAAAAC 62.730 66.667 30.91 4.71 43.93 2.43
519 526 3.037249 CCGCGGACGAAAAACGGA 61.037 61.111 24.07 0.00 46.71 4.69
520 527 3.285776 CCGCGGACGAAAAACGGAC 62.286 63.158 24.07 0.00 46.71 4.79
526 533 4.344109 CGAAAAACGGACGCGCGT 62.344 61.111 38.52 38.52 38.46 6.01
527 534 2.496171 GAAAAACGGACGCGCGTC 60.496 61.111 45.60 45.60 43.87 5.19
539 546 3.411351 CGCGTCCGTTTGGGTCAG 61.411 66.667 0.00 0.00 37.00 3.51
540 547 3.723348 GCGTCCGTTTGGGTCAGC 61.723 66.667 0.00 0.00 37.00 4.26
541 548 3.411351 CGTCCGTTTGGGTCAGCG 61.411 66.667 0.00 0.00 37.00 5.18
542 549 3.723348 GTCCGTTTGGGTCAGCGC 61.723 66.667 0.00 0.00 37.00 5.92
545 552 3.645975 CGTTTGGGTCAGCGCGTT 61.646 61.111 8.43 0.00 0.00 4.84
546 553 2.051345 GTTTGGGTCAGCGCGTTG 60.051 61.111 17.58 17.58 0.00 4.10
547 554 3.283684 TTTGGGTCAGCGCGTTGG 61.284 61.111 22.99 5.26 0.00 3.77
559 566 2.983592 CGTTGGGCCGCCTTTTCT 60.984 61.111 9.86 0.00 0.00 2.52
560 567 2.650778 GTTGGGCCGCCTTTTCTG 59.349 61.111 9.86 0.00 0.00 3.02
561 568 2.197324 TTGGGCCGCCTTTTCTGT 59.803 55.556 9.86 0.00 0.00 3.41
562 569 1.901464 TTGGGCCGCCTTTTCTGTC 60.901 57.895 9.86 0.00 0.00 3.51
563 570 3.062466 GGGCCGCCTTTTCTGTCC 61.062 66.667 9.86 0.00 0.00 4.02
564 571 3.431725 GGCCGCCTTTTCTGTCCG 61.432 66.667 0.71 0.00 0.00 4.79
565 572 4.103103 GCCGCCTTTTCTGTCCGC 62.103 66.667 0.00 0.00 0.00 5.54
566 573 3.788766 CCGCCTTTTCTGTCCGCG 61.789 66.667 0.00 0.00 42.37 6.46
567 574 4.445545 CGCCTTTTCTGTCCGCGC 62.446 66.667 0.00 0.00 36.02 6.86
568 575 4.103103 GCCTTTTCTGTCCGCGCC 62.103 66.667 0.00 0.00 0.00 6.53
569 576 3.788766 CCTTTTCTGTCCGCGCCG 61.789 66.667 0.00 0.00 0.00 6.46
570 577 2.736995 CTTTTCTGTCCGCGCCGA 60.737 61.111 0.00 0.00 0.00 5.54
571 578 3.011760 CTTTTCTGTCCGCGCCGAC 62.012 63.158 20.04 20.04 0.00 4.79
581 588 3.723348 GCGCCGACCCAAACAGAC 61.723 66.667 0.00 0.00 0.00 3.51
582 589 3.411351 CGCCGACCCAAACAGACG 61.411 66.667 0.00 0.00 0.00 4.18
583 590 3.047877 GCCGACCCAAACAGACGG 61.048 66.667 0.00 0.00 45.26 4.79
584 591 3.047877 CCGACCCAAACAGACGGC 61.048 66.667 0.00 0.00 37.32 5.68
585 592 3.047877 CGACCCAAACAGACGGCC 61.048 66.667 0.00 0.00 0.00 6.13
586 593 3.047877 GACCCAAACAGACGGCCG 61.048 66.667 26.86 26.86 0.00 6.13
601 608 3.192922 CCGCGGACGAAATGGGTC 61.193 66.667 24.07 0.00 43.93 4.46
602 609 3.550992 CGCGGACGAAATGGGTCG 61.551 66.667 0.00 0.00 46.54 4.79
603 610 3.861263 GCGGACGAAATGGGTCGC 61.861 66.667 0.00 0.00 45.00 5.19
604 611 3.192922 CGGACGAAATGGGTCGCC 61.193 66.667 0.00 0.00 45.00 5.54
605 612 2.822701 GGACGAAATGGGTCGCCC 60.823 66.667 7.87 7.87 45.00 6.13
616 623 0.172578 GGGTCGCCCATTAAAGTTGC 59.827 55.000 9.72 0.00 44.65 4.17
617 624 1.173913 GGTCGCCCATTAAAGTTGCT 58.826 50.000 0.00 0.00 0.00 3.91
618 625 1.132453 GGTCGCCCATTAAAGTTGCTC 59.868 52.381 0.00 0.00 0.00 4.26
629 636 7.718753 CCCATTAAAGTTGCTCTAAGATCTCAT 59.281 37.037 0.00 0.00 0.00 2.90
630 637 8.772705 CCATTAAAGTTGCTCTAAGATCTCATC 58.227 37.037 0.00 0.00 0.00 2.92
638 645 9.086336 GTTGCTCTAAGATCTCATCAATATAGC 57.914 37.037 0.00 0.00 0.00 2.97
640 647 8.810041 TGCTCTAAGATCTCATCAATATAGCAA 58.190 33.333 0.00 0.00 33.95 3.91
641 648 9.086336 GCTCTAAGATCTCATCAATATAGCAAC 57.914 37.037 0.00 0.00 30.56 4.17
655 662 2.651361 CAACGGCTGAGACCTCGT 59.349 61.111 0.00 0.00 37.45 4.18
675 682 4.099120 CGTTAAGTCTCAATCGACTGAGG 58.901 47.826 22.53 5.62 43.14 3.86
697 704 7.387673 TGAGGTTTAGCAATCATATCATTACCG 59.612 37.037 0.00 0.00 0.00 4.02
708 716 6.436261 TCATATCATTACCGAAGACGTCTTC 58.564 40.000 37.30 37.30 46.63 2.87
749 763 1.549170 GGGAGGAGTAAAGTGAGCGAA 59.451 52.381 0.00 0.00 0.00 4.70
750 764 2.168728 GGGAGGAGTAAAGTGAGCGAAT 59.831 50.000 0.00 0.00 0.00 3.34
751 765 3.369576 GGGAGGAGTAAAGTGAGCGAATT 60.370 47.826 0.00 0.00 0.00 2.17
752 766 3.866327 GGAGGAGTAAAGTGAGCGAATTC 59.134 47.826 0.00 0.00 0.00 2.17
753 767 4.495422 GAGGAGTAAAGTGAGCGAATTCA 58.505 43.478 6.22 0.00 0.00 2.57
787 808 2.745037 GTGGCAACTACCCGGTGA 59.255 61.111 0.00 0.00 37.61 4.02
789 810 0.535553 GTGGCAACTACCCGGTGAAA 60.536 55.000 0.00 0.00 37.61 2.69
819 841 4.576053 TCCAACGAAGCCAAGATAATCATG 59.424 41.667 0.00 0.00 0.00 3.07
823 845 4.336433 ACGAAGCCAAGATAATCATGGTTG 59.664 41.667 0.08 0.00 37.54 3.77
858 884 7.274686 CACATGCCAACATATGTGCATATATTG 59.725 37.037 25.05 18.83 45.09 1.90
864 890 7.413328 CCAACATATGTGCATATATTGTCGGAG 60.413 40.741 12.81 3.73 36.79 4.63
901 937 9.833917 CTCGAGTGTCCACCTATATATAGATAA 57.166 37.037 19.51 1.65 32.05 1.75
931 975 5.012046 TGCTGGAGGTATATCAACATACAGG 59.988 44.000 5.01 0.00 41.41 4.00
933 977 4.904853 TGGAGGTATATCAACATACAGGCA 59.095 41.667 0.00 0.00 33.77 4.75
1342 1472 0.692419 ATGCTTCCGTCCTCCTGGAT 60.692 55.000 0.00 0.00 45.29 3.41
1526 1667 1.617536 ATCCTCAGCAGGGGCAAGA 60.618 57.895 0.00 0.00 44.61 3.02
2219 2493 1.879380 CGATTCTTTCACTGGTTGCCA 59.121 47.619 0.00 0.00 0.00 4.92
2420 2719 5.366477 ACAATCCATTTTTGTTCCCTCAACT 59.634 36.000 0.00 0.00 33.64 3.16
2422 2721 3.895041 TCCATTTTTGTTCCCTCAACTCC 59.105 43.478 0.00 0.00 35.79 3.85
2436 2738 1.133482 CAACTCCCACTTTGGTCCCTT 60.133 52.381 0.00 0.00 35.17 3.95
2449 2751 1.420138 GGTCCCTTGACTCTCAAACCA 59.580 52.381 1.15 0.00 41.47 3.67
2450 2752 2.551071 GGTCCCTTGACTCTCAAACCAG 60.551 54.545 1.15 0.00 41.47 4.00
2452 2754 2.634940 TCCCTTGACTCTCAAACCAGAG 59.365 50.000 0.00 0.00 44.96 3.35
2475 2777 0.318441 CAGCTCCACGAACTCTCCAA 59.682 55.000 0.00 0.00 0.00 3.53
2478 2780 1.797025 CTCCACGAACTCTCCAAACC 58.203 55.000 0.00 0.00 0.00 3.27
2485 2787 3.181454 ACGAACTCTCCAAACCAGTCATT 60.181 43.478 0.00 0.00 0.00 2.57
2495 2797 4.202111 CCAAACCAGTCATTTTTCGTCCTT 60.202 41.667 0.00 0.00 0.00 3.36
2501 2803 4.036262 CAGTCATTTTTCGTCCTTGTGGAA 59.964 41.667 0.00 0.00 45.18 3.53
2505 2807 1.314730 TTTCGTCCTTGTGGAAAGGC 58.685 50.000 0.00 0.00 45.18 4.35
2526 2828 0.319297 ACACGGTTTCGCTACTGACC 60.319 55.000 3.05 0.00 40.63 4.02
2528 2830 1.804326 CGGTTTCGCTACTGACCCG 60.804 63.158 0.00 0.00 0.00 5.28
2554 2856 0.955428 TTGGACCAATCGCTGCTCAC 60.955 55.000 1.69 0.00 0.00 3.51
2563 2865 2.482374 GCTGCTCACGTGGCATTC 59.518 61.111 25.16 18.03 39.07 2.67
2735 3037 3.428045 GCTAAGGCCTTGTACAATGCAAG 60.428 47.826 29.20 23.50 42.00 4.01
2743 3045 5.046910 CTTGTACAATGCAAGGTGGTTAG 57.953 43.478 9.13 0.00 39.53 2.34
2744 3046 3.417101 TGTACAATGCAAGGTGGTTAGG 58.583 45.455 0.00 0.00 0.00 2.69
2745 3047 1.923356 ACAATGCAAGGTGGTTAGGG 58.077 50.000 0.00 0.00 0.00 3.53
2746 3048 1.185315 CAATGCAAGGTGGTTAGGGG 58.815 55.000 0.00 0.00 0.00 4.79
2747 3049 1.080638 AATGCAAGGTGGTTAGGGGA 58.919 50.000 0.00 0.00 0.00 4.81
2748 3050 0.625849 ATGCAAGGTGGTTAGGGGAG 59.374 55.000 0.00 0.00 0.00 4.30
2749 3051 0.474854 TGCAAGGTGGTTAGGGGAGA 60.475 55.000 0.00 0.00 0.00 3.71
2750 3052 0.919710 GCAAGGTGGTTAGGGGAGAT 59.080 55.000 0.00 0.00 0.00 2.75
2751 3053 1.408822 GCAAGGTGGTTAGGGGAGATG 60.409 57.143 0.00 0.00 0.00 2.90
2752 3054 0.919710 AAGGTGGTTAGGGGAGATGC 59.080 55.000 0.00 0.00 0.00 3.91
2753 3055 0.044855 AGGTGGTTAGGGGAGATGCT 59.955 55.000 0.00 0.00 0.00 3.79
2754 3056 0.919710 GGTGGTTAGGGGAGATGCTT 59.080 55.000 0.00 0.00 0.00 3.91
2755 3057 2.124411 GGTGGTTAGGGGAGATGCTTA 58.876 52.381 0.00 0.00 0.00 3.09
2756 3058 2.104963 GGTGGTTAGGGGAGATGCTTAG 59.895 54.545 0.00 0.00 0.00 2.18
2757 3059 3.039011 GTGGTTAGGGGAGATGCTTAGA 58.961 50.000 0.00 0.00 0.00 2.10
2758 3060 3.070302 GTGGTTAGGGGAGATGCTTAGAG 59.930 52.174 0.00 0.00 0.00 2.43
2759 3061 3.052109 TGGTTAGGGGAGATGCTTAGAGA 60.052 47.826 0.00 0.00 0.00 3.10
2760 3062 3.967987 GGTTAGGGGAGATGCTTAGAGAA 59.032 47.826 0.00 0.00 0.00 2.87
2761 3063 4.409247 GGTTAGGGGAGATGCTTAGAGAAA 59.591 45.833 0.00 0.00 0.00 2.52
2762 3064 5.072464 GGTTAGGGGAGATGCTTAGAGAAAT 59.928 44.000 0.00 0.00 0.00 2.17
2763 3065 6.270231 GGTTAGGGGAGATGCTTAGAGAAATA 59.730 42.308 0.00 0.00 0.00 1.40
2764 3066 7.202102 GGTTAGGGGAGATGCTTAGAGAAATAA 60.202 40.741 0.00 0.00 0.00 1.40
2765 3067 6.831664 AGGGGAGATGCTTAGAGAAATAAA 57.168 37.500 0.00 0.00 0.00 1.40
2766 3068 6.596621 AGGGGAGATGCTTAGAGAAATAAAC 58.403 40.000 0.00 0.00 0.00 2.01
2767 3069 5.765677 GGGGAGATGCTTAGAGAAATAAACC 59.234 44.000 0.00 0.00 0.00 3.27
2768 3070 6.357367 GGGAGATGCTTAGAGAAATAAACCA 58.643 40.000 0.00 0.00 0.00 3.67
2769 3071 6.261158 GGGAGATGCTTAGAGAAATAAACCAC 59.739 42.308 0.00 0.00 0.00 4.16
2770 3072 6.018669 GGAGATGCTTAGAGAAATAAACCACG 60.019 42.308 0.00 0.00 0.00 4.94
2771 3073 6.407202 AGATGCTTAGAGAAATAAACCACGT 58.593 36.000 0.00 0.00 0.00 4.49
2772 3074 6.879458 AGATGCTTAGAGAAATAAACCACGTT 59.121 34.615 0.00 0.00 0.00 3.99
2773 3075 6.870971 TGCTTAGAGAAATAAACCACGTTT 57.129 33.333 0.00 0.00 39.24 3.60
2774 3076 7.266922 TGCTTAGAGAAATAAACCACGTTTT 57.733 32.000 0.00 0.00 37.01 2.43
2775 3077 7.708998 TGCTTAGAGAAATAAACCACGTTTTT 58.291 30.769 0.00 0.00 37.01 1.94
2799 3101 8.819643 TTTTAAGCATGGGTGTTTATTTGTAC 57.180 30.769 0.00 0.00 32.19 2.90
2800 3102 7.768807 TTAAGCATGGGTGTTTATTTGTACT 57.231 32.000 0.00 0.00 32.19 2.73
2801 3103 5.643379 AGCATGGGTGTTTATTTGTACTG 57.357 39.130 0.00 0.00 0.00 2.74
2802 3104 4.462483 AGCATGGGTGTTTATTTGTACTGG 59.538 41.667 0.00 0.00 0.00 4.00
2803 3105 4.461081 GCATGGGTGTTTATTTGTACTGGA 59.539 41.667 0.00 0.00 0.00 3.86
2804 3106 5.621329 GCATGGGTGTTTATTTGTACTGGAC 60.621 44.000 0.00 0.00 0.00 4.02
2805 3107 5.050126 TGGGTGTTTATTTGTACTGGACA 57.950 39.130 0.00 0.00 35.78 4.02
2806 3108 5.067273 TGGGTGTTTATTTGTACTGGACAG 58.933 41.667 0.00 0.00 39.88 3.51
2807 3109 5.163184 TGGGTGTTTATTTGTACTGGACAGA 60.163 40.000 6.29 0.00 39.88 3.41
2808 3110 5.180680 GGGTGTTTATTTGTACTGGACAGAC 59.819 44.000 6.29 1.20 39.88 3.51
2809 3111 5.107220 GGTGTTTATTTGTACTGGACAGACG 60.107 44.000 6.29 0.00 39.88 4.18
2810 3112 4.449743 TGTTTATTTGTACTGGACAGACGC 59.550 41.667 6.29 0.00 39.88 5.19
2811 3113 4.530710 TTATTTGTACTGGACAGACGCT 57.469 40.909 6.29 0.00 39.88 5.07
2812 3114 2.902705 TTTGTACTGGACAGACGCTT 57.097 45.000 6.29 0.00 39.88 4.68
2813 3115 4.530710 ATTTGTACTGGACAGACGCTTA 57.469 40.909 6.29 0.00 39.88 3.09
2814 3116 4.325028 TTTGTACTGGACAGACGCTTAA 57.675 40.909 6.29 0.00 39.88 1.85
2815 3117 4.530710 TTGTACTGGACAGACGCTTAAT 57.469 40.909 6.29 0.00 39.88 1.40
2816 3118 4.530710 TGTACTGGACAGACGCTTAATT 57.469 40.909 6.29 0.00 32.86 1.40
2817 3119 5.648178 TGTACTGGACAGACGCTTAATTA 57.352 39.130 6.29 0.00 32.86 1.40
2818 3120 5.647589 TGTACTGGACAGACGCTTAATTAG 58.352 41.667 6.29 0.00 32.86 1.73
2819 3121 4.124851 ACTGGACAGACGCTTAATTAGG 57.875 45.455 6.29 0.00 0.00 2.69
2820 3122 2.866762 CTGGACAGACGCTTAATTAGGC 59.133 50.000 9.43 9.43 0.00 3.93
2821 3123 2.235155 TGGACAGACGCTTAATTAGGCA 59.765 45.455 18.43 0.00 0.00 4.75
2822 3124 3.118408 TGGACAGACGCTTAATTAGGCAT 60.118 43.478 18.43 3.98 0.00 4.40
2823 3125 3.495001 GGACAGACGCTTAATTAGGCATC 59.505 47.826 18.43 13.24 0.00 3.91
2824 3126 4.372656 GACAGACGCTTAATTAGGCATCT 58.627 43.478 18.43 15.24 30.85 2.90
2825 3127 4.372656 ACAGACGCTTAATTAGGCATCTC 58.627 43.478 14.37 7.72 28.15 2.75
2826 3128 4.100189 ACAGACGCTTAATTAGGCATCTCT 59.900 41.667 14.37 9.61 28.15 3.10
2827 3129 4.683781 CAGACGCTTAATTAGGCATCTCTC 59.316 45.833 14.37 3.46 28.15 3.20
2828 3130 3.991121 GACGCTTAATTAGGCATCTCTCC 59.009 47.826 18.43 0.00 0.00 3.71
2829 3131 3.643792 ACGCTTAATTAGGCATCTCTCCT 59.356 43.478 18.43 0.00 37.72 3.69
2830 3132 4.833380 ACGCTTAATTAGGCATCTCTCCTA 59.167 41.667 18.43 0.00 35.21 2.94
2831 3133 5.482175 ACGCTTAATTAGGCATCTCTCCTAT 59.518 40.000 18.43 0.00 36.20 2.57
2832 3134 6.663953 ACGCTTAATTAGGCATCTCTCCTATA 59.336 38.462 18.43 0.00 36.20 1.31
2833 3135 7.147983 ACGCTTAATTAGGCATCTCTCCTATAG 60.148 40.741 18.43 0.00 36.20 1.31
2834 3136 7.067615 CGCTTAATTAGGCATCTCTCCTATAGA 59.932 40.741 18.43 0.00 36.20 1.98
2835 3137 8.754080 GCTTAATTAGGCATCTCTCCTATAGAA 58.246 37.037 14.21 0.00 36.20 2.10
2849 3151 5.153950 CCTATAGAAATAGGCACTGGACC 57.846 47.826 0.00 0.00 46.45 4.46
2850 3152 4.593206 CCTATAGAAATAGGCACTGGACCA 59.407 45.833 0.00 0.00 46.45 4.02
2851 3153 5.249393 CCTATAGAAATAGGCACTGGACCAT 59.751 44.000 0.00 0.00 46.45 3.55
2852 3154 3.287867 AGAAATAGGCACTGGACCATG 57.712 47.619 0.00 0.00 41.52 3.66
2853 3155 2.846206 AGAAATAGGCACTGGACCATGA 59.154 45.455 0.00 0.00 41.52 3.07
2854 3156 3.266772 AGAAATAGGCACTGGACCATGAA 59.733 43.478 0.00 0.00 41.52 2.57
2855 3157 3.737559 AATAGGCACTGGACCATGAAA 57.262 42.857 0.00 0.00 41.52 2.69
2856 3158 3.959495 ATAGGCACTGGACCATGAAAT 57.041 42.857 0.00 0.00 41.52 2.17
2857 3159 5.387113 AATAGGCACTGGACCATGAAATA 57.613 39.130 0.00 0.00 41.52 1.40
2858 3160 3.287867 AGGCACTGGACCATGAAATAG 57.712 47.619 0.00 0.00 37.18 1.73
2859 3161 2.092212 AGGCACTGGACCATGAAATAGG 60.092 50.000 0.00 0.00 37.18 2.57
2860 3162 1.678101 GCACTGGACCATGAAATAGGC 59.322 52.381 0.00 0.00 0.00 3.93
2861 3163 2.945440 GCACTGGACCATGAAATAGGCA 60.945 50.000 0.00 0.00 0.00 4.75
2862 3164 2.684881 CACTGGACCATGAAATAGGCAC 59.315 50.000 0.00 0.00 0.00 5.01
2863 3165 2.578021 ACTGGACCATGAAATAGGCACT 59.422 45.455 0.00 0.00 46.37 4.40
2864 3166 3.010584 ACTGGACCATGAAATAGGCACTT 59.989 43.478 0.00 0.00 41.75 3.16
2865 3167 4.019174 CTGGACCATGAAATAGGCACTTT 58.981 43.478 0.00 0.00 41.75 2.66
2866 3168 3.763360 TGGACCATGAAATAGGCACTTTG 59.237 43.478 0.00 0.00 41.75 2.77
2867 3169 3.763897 GGACCATGAAATAGGCACTTTGT 59.236 43.478 0.00 0.00 41.75 2.83
2868 3170 4.947388 GGACCATGAAATAGGCACTTTGTA 59.053 41.667 0.00 0.00 41.75 2.41
2869 3171 5.417580 GGACCATGAAATAGGCACTTTGTAA 59.582 40.000 0.00 0.00 41.75 2.41
2870 3172 6.071616 GGACCATGAAATAGGCACTTTGTAAA 60.072 38.462 0.00 0.00 41.75 2.01
2871 3173 7.296628 ACCATGAAATAGGCACTTTGTAAAA 57.703 32.000 0.00 0.00 41.75 1.52
2872 3174 7.906327 ACCATGAAATAGGCACTTTGTAAAAT 58.094 30.769 0.00 0.00 41.75 1.82
2873 3175 8.374743 ACCATGAAATAGGCACTTTGTAAAATT 58.625 29.630 0.00 0.00 41.75 1.82
2874 3176 9.218440 CCATGAAATAGGCACTTTGTAAAATTT 57.782 29.630 0.00 0.00 41.75 1.82
2876 3178 8.600449 TGAAATAGGCACTTTGTAAAATTTGG 57.400 30.769 0.00 0.00 41.75 3.28
2877 3179 7.172361 TGAAATAGGCACTTTGTAAAATTTGGC 59.828 33.333 0.00 0.00 41.75 4.52
2878 3180 3.389221 AGGCACTTTGTAAAATTTGGCG 58.611 40.909 0.00 0.00 27.25 5.69
2879 3181 3.068873 AGGCACTTTGTAAAATTTGGCGA 59.931 39.130 0.00 0.00 27.25 5.54
2880 3182 3.993736 GGCACTTTGTAAAATTTGGCGAT 59.006 39.130 0.00 0.00 0.00 4.58
2881 3183 4.450757 GGCACTTTGTAAAATTTGGCGATT 59.549 37.500 0.00 0.00 0.00 3.34
2882 3184 5.389411 GGCACTTTGTAAAATTTGGCGATTC 60.389 40.000 0.00 0.00 0.00 2.52
2883 3185 5.405269 GCACTTTGTAAAATTTGGCGATTCT 59.595 36.000 0.00 0.00 0.00 2.40
2884 3186 6.073819 GCACTTTGTAAAATTTGGCGATTCTT 60.074 34.615 0.00 0.00 0.00 2.52
2885 3187 7.518211 GCACTTTGTAAAATTTGGCGATTCTTT 60.518 33.333 0.00 0.00 0.00 2.52
2886 3188 8.334632 CACTTTGTAAAATTTGGCGATTCTTTT 58.665 29.630 0.00 0.00 0.00 2.27
2887 3189 8.334632 ACTTTGTAAAATTTGGCGATTCTTTTG 58.665 29.630 0.00 0.00 0.00 2.44
2888 3190 6.221858 TGTAAAATTTGGCGATTCTTTTGC 57.778 33.333 0.00 0.00 0.00 3.68
2889 3191 5.988561 TGTAAAATTTGGCGATTCTTTTGCT 59.011 32.000 0.00 0.00 34.85 3.91
2890 3192 4.996062 AAATTTGGCGATTCTTTTGCTG 57.004 36.364 0.00 0.00 34.85 4.41
2891 3193 3.665745 ATTTGGCGATTCTTTTGCTGT 57.334 38.095 0.00 0.00 34.85 4.40
2892 3194 2.420628 TTGGCGATTCTTTTGCTGTG 57.579 45.000 0.00 0.00 34.85 3.66
2893 3195 1.317613 TGGCGATTCTTTTGCTGTGT 58.682 45.000 0.00 0.00 34.85 3.72
2894 3196 1.001487 TGGCGATTCTTTTGCTGTGTG 60.001 47.619 0.00 0.00 34.85 3.82
2895 3197 1.055338 GCGATTCTTTTGCTGTGTGC 58.945 50.000 0.00 0.00 43.25 4.57
2896 3198 1.689959 CGATTCTTTTGCTGTGTGCC 58.310 50.000 0.00 0.00 42.00 5.01
2897 3199 1.267806 CGATTCTTTTGCTGTGTGCCT 59.732 47.619 0.00 0.00 42.00 4.75
2898 3200 2.287788 CGATTCTTTTGCTGTGTGCCTT 60.288 45.455 0.00 0.00 42.00 4.35
2899 3201 3.721035 GATTCTTTTGCTGTGTGCCTTT 58.279 40.909 0.00 0.00 42.00 3.11
2900 3202 3.608316 TTCTTTTGCTGTGTGCCTTTT 57.392 38.095 0.00 0.00 42.00 2.27
2901 3203 3.163630 TCTTTTGCTGTGTGCCTTTTC 57.836 42.857 0.00 0.00 42.00 2.29
2902 3204 2.760092 TCTTTTGCTGTGTGCCTTTTCT 59.240 40.909 0.00 0.00 42.00 2.52
2903 3205 3.195396 TCTTTTGCTGTGTGCCTTTTCTT 59.805 39.130 0.00 0.00 42.00 2.52
2904 3206 3.608316 TTTGCTGTGTGCCTTTTCTTT 57.392 38.095 0.00 0.00 42.00 2.52
2905 3207 3.608316 TTGCTGTGTGCCTTTTCTTTT 57.392 38.095 0.00 0.00 42.00 2.27
2917 3219 7.494298 TGTGCCTTTTCTTTTCTTTGGTTATTC 59.506 33.333 0.00 0.00 0.00 1.75
2921 3223 9.045223 CCTTTTCTTTTCTTTGGTTATTCCTTG 57.955 33.333 0.00 0.00 37.07 3.61
2932 3234 8.713708 TTTGGTTATTCCTTGGTTCAATTCTA 57.286 30.769 0.00 0.00 37.07 2.10
2933 3235 7.938140 TGGTTATTCCTTGGTTCAATTCTAG 57.062 36.000 0.00 0.00 37.07 2.43
2936 3238 4.380843 TTCCTTGGTTCAATTCTAGCCA 57.619 40.909 0.00 0.00 0.00 4.75
2953 3255 1.810151 GCCAAGCTACGGAATTGTTCA 59.190 47.619 6.28 0.00 0.00 3.18
3052 3359 9.858247 CATGTTTTGATGAACAGAAAAAGATTG 57.142 29.630 0.00 0.00 42.28 2.67
3053 3360 7.908230 TGTTTTGATGAACAGAAAAAGATTGC 58.092 30.769 0.00 0.00 34.77 3.56
3054 3361 7.765360 TGTTTTGATGAACAGAAAAAGATTGCT 59.235 29.630 0.00 0.00 34.77 3.91
3055 3362 8.606602 GTTTTGATGAACAGAAAAAGATTGCTT 58.393 29.630 0.00 0.00 35.37 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
299 303 4.821589 CCGGCGACTCTTCCAGCC 62.822 72.222 9.30 0.00 45.67 4.85
416 423 2.202946 GCTCGCCTACTTCTGCCC 60.203 66.667 0.00 0.00 0.00 5.36
417 424 1.079127 TTGCTCGCCTACTTCTGCC 60.079 57.895 0.00 0.00 0.00 4.85
418 425 1.700600 GCTTGCTCGCCTACTTCTGC 61.701 60.000 0.00 0.00 0.00 4.26
419 426 1.416813 CGCTTGCTCGCCTACTTCTG 61.417 60.000 0.00 0.00 0.00 3.02
420 427 1.153745 CGCTTGCTCGCCTACTTCT 60.154 57.895 0.00 0.00 0.00 2.85
421 428 3.389206 CGCTTGCTCGCCTACTTC 58.611 61.111 0.00 0.00 0.00 3.01
458 465 4.520846 GCCTGATTTGCGTCGGCG 62.521 66.667 4.29 4.29 44.10 6.46
459 466 3.100862 GAGCCTGATTTGCGTCGGC 62.101 63.158 0.00 0.00 37.76 5.54
460 467 1.298157 TTGAGCCTGATTTGCGTCGG 61.298 55.000 0.00 0.00 0.00 4.79
461 468 0.516877 TTTGAGCCTGATTTGCGTCG 59.483 50.000 0.00 0.00 0.00 5.12
462 469 2.704725 TTTTGAGCCTGATTTGCGTC 57.295 45.000 0.00 0.00 0.00 5.19
463 470 3.319755 CATTTTTGAGCCTGATTTGCGT 58.680 40.909 0.00 0.00 0.00 5.24
464 471 2.669434 CCATTTTTGAGCCTGATTTGCG 59.331 45.455 0.00 0.00 0.00 4.85
465 472 3.004862 CCCATTTTTGAGCCTGATTTGC 58.995 45.455 0.00 0.00 0.00 3.68
466 473 3.004862 GCCCATTTTTGAGCCTGATTTG 58.995 45.455 0.00 0.00 0.00 2.32
467 474 2.026915 GGCCCATTTTTGAGCCTGATTT 60.027 45.455 0.00 0.00 42.34 2.17
468 475 1.556451 GGCCCATTTTTGAGCCTGATT 59.444 47.619 0.00 0.00 42.34 2.57
469 476 1.197812 GGCCCATTTTTGAGCCTGAT 58.802 50.000 0.00 0.00 42.34 2.90
470 477 1.250154 CGGCCCATTTTTGAGCCTGA 61.250 55.000 0.00 0.00 43.48 3.86
471 478 1.216178 CGGCCCATTTTTGAGCCTG 59.784 57.895 0.00 0.00 43.48 4.85
472 479 0.967380 CTCGGCCCATTTTTGAGCCT 60.967 55.000 0.00 0.00 43.48 4.58
473 480 0.965363 TCTCGGCCCATTTTTGAGCC 60.965 55.000 0.00 0.00 42.18 4.70
474 481 0.887933 TTCTCGGCCCATTTTTGAGC 59.112 50.000 0.00 0.00 0.00 4.26
475 482 2.159198 CCATTCTCGGCCCATTTTTGAG 60.159 50.000 0.00 0.00 0.00 3.02
476 483 1.824230 CCATTCTCGGCCCATTTTTGA 59.176 47.619 0.00 0.00 0.00 2.69
477 484 1.134729 CCCATTCTCGGCCCATTTTTG 60.135 52.381 0.00 0.00 0.00 2.44
478 485 1.194218 CCCATTCTCGGCCCATTTTT 58.806 50.000 0.00 0.00 0.00 1.94
479 486 0.041090 ACCCATTCTCGGCCCATTTT 59.959 50.000 0.00 0.00 0.00 1.82
480 487 0.395724 GACCCATTCTCGGCCCATTT 60.396 55.000 0.00 0.00 0.00 2.32
481 488 1.227383 GACCCATTCTCGGCCCATT 59.773 57.895 0.00 0.00 0.00 3.16
482 489 2.919043 GACCCATTCTCGGCCCAT 59.081 61.111 0.00 0.00 0.00 4.00
483 490 3.781307 CGACCCATTCTCGGCCCA 61.781 66.667 0.00 0.00 0.00 5.36
499 506 4.729798 GTTTTTCGTCCGCGGGCG 62.730 66.667 44.15 44.15 38.89 6.13
500 507 4.729798 CGTTTTTCGTCCGCGGGC 62.730 66.667 27.83 25.32 38.89 6.13
501 508 4.079748 CCGTTTTTCGTCCGCGGG 62.080 66.667 27.83 10.69 38.86 6.13
502 509 3.037249 TCCGTTTTTCGTCCGCGG 61.037 61.111 22.12 22.12 43.32 6.46
503 510 2.169327 GTCCGTTTTTCGTCCGCG 59.831 61.111 0.00 0.00 37.94 6.46
504 511 2.169327 CGTCCGTTTTTCGTCCGC 59.831 61.111 0.00 0.00 37.94 5.54
505 512 2.169327 GCGTCCGTTTTTCGTCCG 59.831 61.111 0.00 0.00 37.94 4.79
506 513 2.169327 CGCGTCCGTTTTTCGTCC 59.831 61.111 0.00 0.00 37.94 4.79
507 514 2.496171 GCGCGTCCGTTTTTCGTC 60.496 61.111 8.43 0.00 37.94 4.20
508 515 4.344109 CGCGCGTCCGTTTTTCGT 62.344 61.111 24.19 0.00 37.94 3.85
509 516 4.344109 ACGCGCGTCCGTTTTTCG 62.344 61.111 32.73 0.00 38.47 3.46
510 517 2.496171 GACGCGCGTCCGTTTTTC 60.496 61.111 44.30 23.38 42.24 2.29
522 529 3.411351 CTGACCCAAACGGACGCG 61.411 66.667 3.53 3.53 34.64 6.01
523 530 3.723348 GCTGACCCAAACGGACGC 61.723 66.667 0.00 0.00 34.64 5.19
524 531 3.411351 CGCTGACCCAAACGGACG 61.411 66.667 0.00 0.00 34.64 4.79
525 532 3.723348 GCGCTGACCCAAACGGAC 61.723 66.667 0.00 0.00 34.64 4.79
528 535 3.645975 AACGCGCTGACCCAAACG 61.646 61.111 5.73 0.00 0.00 3.60
529 536 2.051345 CAACGCGCTGACCCAAAC 60.051 61.111 5.73 0.00 0.00 2.93
530 537 3.283684 CCAACGCGCTGACCCAAA 61.284 61.111 11.83 0.00 0.00 3.28
542 549 2.983592 AGAAAAGGCGGCCCAACG 60.984 61.111 17.02 0.00 0.00 4.10
543 550 2.142357 GACAGAAAAGGCGGCCCAAC 62.142 60.000 17.02 5.20 0.00 3.77
544 551 1.901464 GACAGAAAAGGCGGCCCAA 60.901 57.895 17.02 0.00 0.00 4.12
545 552 2.282180 GACAGAAAAGGCGGCCCA 60.282 61.111 17.02 0.00 0.00 5.36
546 553 3.062466 GGACAGAAAAGGCGGCCC 61.062 66.667 17.02 0.00 0.00 5.80
547 554 3.431725 CGGACAGAAAAGGCGGCC 61.432 66.667 12.11 12.11 0.00 6.13
548 555 4.103103 GCGGACAGAAAAGGCGGC 62.103 66.667 0.00 0.00 0.00 6.53
549 556 3.788766 CGCGGACAGAAAAGGCGG 61.789 66.667 0.00 0.00 42.86 6.13
551 558 4.103103 GGCGCGGACAGAAAAGGC 62.103 66.667 8.83 0.00 0.00 4.35
552 559 3.788766 CGGCGCGGACAGAAAAGG 61.789 66.667 9.72 0.00 0.00 3.11
553 560 2.736995 TCGGCGCGGACAGAAAAG 60.737 61.111 14.27 0.00 0.00 2.27
554 561 3.039588 GTCGGCGCGGACAGAAAA 61.040 61.111 34.74 4.76 36.91 2.29
564 571 3.723348 GTCTGTTTGGGTCGGCGC 61.723 66.667 0.00 0.00 0.00 6.53
565 572 3.411351 CGTCTGTTTGGGTCGGCG 61.411 66.667 0.00 0.00 0.00 6.46
566 573 3.047877 CCGTCTGTTTGGGTCGGC 61.048 66.667 0.00 0.00 35.01 5.54
567 574 3.047877 GCCGTCTGTTTGGGTCGG 61.048 66.667 0.00 0.00 43.37 4.79
568 575 3.047877 GGCCGTCTGTTTGGGTCG 61.048 66.667 0.00 0.00 0.00 4.79
569 576 3.047877 CGGCCGTCTGTTTGGGTC 61.048 66.667 19.50 0.00 0.00 4.46
584 591 3.192922 GACCCATTTCGTCCGCGG 61.193 66.667 22.12 22.12 38.89 6.46
585 592 3.550992 CGACCCATTTCGTCCGCG 61.551 66.667 0.00 0.00 39.92 6.46
586 593 3.861263 GCGACCCATTTCGTCCGC 61.861 66.667 0.00 0.00 41.26 5.54
587 594 3.192922 GGCGACCCATTTCGTCCG 61.193 66.667 0.00 0.00 41.26 4.79
599 606 2.084546 AGAGCAACTTTAATGGGCGAC 58.915 47.619 0.00 0.00 0.00 5.19
600 607 2.489938 AGAGCAACTTTAATGGGCGA 57.510 45.000 0.00 0.00 0.00 5.54
601 608 3.938963 TCTTAGAGCAACTTTAATGGGCG 59.061 43.478 0.00 0.00 0.00 6.13
602 609 5.825151 AGATCTTAGAGCAACTTTAATGGGC 59.175 40.000 0.00 0.00 0.00 5.36
603 610 7.050377 TGAGATCTTAGAGCAACTTTAATGGG 58.950 38.462 0.00 0.00 0.00 4.00
604 611 8.674263 ATGAGATCTTAGAGCAACTTTAATGG 57.326 34.615 0.00 0.00 0.00 3.16
605 612 9.322773 TGATGAGATCTTAGAGCAACTTTAATG 57.677 33.333 0.00 0.00 0.00 1.90
606 613 9.896645 TTGATGAGATCTTAGAGCAACTTTAAT 57.103 29.630 0.00 0.00 0.00 1.40
607 614 9.896645 ATTGATGAGATCTTAGAGCAACTTTAA 57.103 29.630 0.00 0.00 0.00 1.52
612 619 9.086336 GCTATATTGATGAGATCTTAGAGCAAC 57.914 37.037 10.26 0.00 35.25 4.17
613 620 8.810041 TGCTATATTGATGAGATCTTAGAGCAA 58.190 33.333 13.94 9.21 38.59 3.91
614 621 8.358582 TGCTATATTGATGAGATCTTAGAGCA 57.641 34.615 12.80 12.80 38.89 4.26
615 622 9.086336 GTTGCTATATTGATGAGATCTTAGAGC 57.914 37.037 8.78 8.78 35.47 4.09
616 623 9.288124 CGTTGCTATATTGATGAGATCTTAGAG 57.712 37.037 0.00 0.00 0.00 2.43
617 624 8.246871 CCGTTGCTATATTGATGAGATCTTAGA 58.753 37.037 0.00 0.00 0.00 2.10
618 625 7.009999 GCCGTTGCTATATTGATGAGATCTTAG 59.990 40.741 0.00 0.00 33.53 2.18
638 645 0.242825 TAACGAGGTCTCAGCCGTTG 59.757 55.000 0.00 0.00 43.75 4.10
640 647 0.526662 CTTAACGAGGTCTCAGCCGT 59.473 55.000 0.00 0.00 36.77 5.68
641 648 0.526662 ACTTAACGAGGTCTCAGCCG 59.473 55.000 0.00 0.00 0.00 5.52
648 655 4.097012 GTCGATTGAGACTTAACGAGGTC 58.903 47.826 0.00 0.00 38.09 3.85
665 672 4.471904 TGATTGCTAAACCTCAGTCGAT 57.528 40.909 0.00 0.00 0.00 3.59
675 682 8.988934 TCTTCGGTAATGATATGATTGCTAAAC 58.011 33.333 3.31 0.00 0.00 2.01
697 704 5.219987 CCGAAAACTAATCGAAGACGTCTTC 60.220 44.000 37.30 37.30 46.63 2.87
708 716 2.073816 AGTGGCACCGAAAACTAATCG 58.926 47.619 15.27 0.00 39.92 3.34
749 763 5.153513 CACCAATCGTCGTTGAATTTGAAT 58.846 37.500 8.51 0.00 0.00 2.57
750 764 4.532276 CACCAATCGTCGTTGAATTTGAA 58.468 39.130 8.51 0.00 0.00 2.69
751 765 3.058570 CCACCAATCGTCGTTGAATTTGA 60.059 43.478 8.51 0.00 0.00 2.69
752 766 3.233578 CCACCAATCGTCGTTGAATTTG 58.766 45.455 8.51 0.00 0.00 2.32
753 767 2.351350 GCCACCAATCGTCGTTGAATTT 60.351 45.455 8.51 0.00 0.00 1.82
819 841 3.924144 TGGCATGTGCTTAAAATCAACC 58.076 40.909 4.84 0.00 41.70 3.77
823 845 6.757947 ACATATGTTGGCATGTGCTTAAAATC 59.242 34.615 1.41 0.00 44.71 2.17
858 884 1.026584 GAGGACCTAGCTTCTCCGAC 58.973 60.000 0.00 0.00 0.00 4.79
864 890 1.402613 GACACTCGAGGACCTAGCTTC 59.597 57.143 18.41 0.00 0.00 3.86
931 975 2.989840 CTCGATCGGTGGAGAATAATGC 59.010 50.000 16.41 0.00 32.46 3.56
933 977 2.628178 TGCTCGATCGGTGGAGAATAAT 59.372 45.455 16.41 0.00 32.46 1.28
1059 1161 3.736224 CTGGCCTGGCATCCCACT 61.736 66.667 22.05 0.00 35.79 4.00
1506 1638 2.905935 CTTGCCCCTGCTGAGGATGG 62.906 65.000 0.00 0.00 42.93 3.51
1526 1667 2.741878 CGGACGGCATCTGGAAGTTTAT 60.742 50.000 0.00 0.00 33.76 1.40
1639 1783 0.321564 CGTTGAGGCCCTTGATGACA 60.322 55.000 0.00 0.00 0.00 3.58
1942 2086 1.882352 GCGTTCTCCACCACCATTCTT 60.882 52.381 0.00 0.00 0.00 2.52
2397 2696 5.857268 AGTTGAGGGAACAAAAATGGATTG 58.143 37.500 0.00 0.00 36.98 2.67
2398 2697 5.012046 GGAGTTGAGGGAACAAAAATGGATT 59.988 40.000 0.00 0.00 36.98 3.01
2399 2698 4.528206 GGAGTTGAGGGAACAAAAATGGAT 59.472 41.667 0.00 0.00 36.98 3.41
2400 2699 3.895041 GGAGTTGAGGGAACAAAAATGGA 59.105 43.478 0.00 0.00 36.98 3.41
2404 2703 3.028130 GTGGGAGTTGAGGGAACAAAAA 58.972 45.455 0.00 0.00 36.98 1.94
2420 2719 0.476771 GTCAAGGGACCAAAGTGGGA 59.523 55.000 0.00 0.00 43.37 4.37
2422 2721 1.421646 AGAGTCAAGGGACCAAAGTGG 59.578 52.381 0.00 0.00 45.48 4.00
2449 2751 0.885196 GTTCGTGGAGCTGTCTCTCT 59.115 55.000 0.00 0.00 39.31 3.10
2450 2752 0.885196 AGTTCGTGGAGCTGTCTCTC 59.115 55.000 0.00 0.00 39.31 3.20
2452 2754 0.885196 AGAGTTCGTGGAGCTGTCTC 59.115 55.000 0.00 0.00 38.62 3.36
2457 2759 1.048601 TTTGGAGAGTTCGTGGAGCT 58.951 50.000 0.00 0.00 0.00 4.09
2475 2777 3.951680 ACAAGGACGAAAAATGACTGGTT 59.048 39.130 0.00 0.00 0.00 3.67
2478 2780 3.563808 TCCACAAGGACGAAAAATGACTG 59.436 43.478 0.00 0.00 39.61 3.51
2485 2787 1.679153 GCCTTTCCACAAGGACGAAAA 59.321 47.619 4.74 0.00 45.73 2.29
2495 2797 2.280524 CCGTGTCGCCTTTCCACA 60.281 61.111 0.00 0.00 0.00 4.17
2505 2807 0.386352 TCAGTAGCGAAACCGTGTCG 60.386 55.000 6.75 6.75 41.46 4.35
2539 2841 2.029288 CACGTGAGCAGCGATTGGT 61.029 57.895 10.90 0.00 41.02 3.67
2700 3002 2.423660 GGCCTTAGCTGACTAGGAGAGA 60.424 54.545 0.00 0.00 39.73 3.10
2735 3037 0.919710 AAGCATCTCCCCTAACCACC 59.080 55.000 0.00 0.00 0.00 4.61
2736 3038 3.039011 TCTAAGCATCTCCCCTAACCAC 58.961 50.000 0.00 0.00 0.00 4.16
2737 3039 3.052109 TCTCTAAGCATCTCCCCTAACCA 60.052 47.826 0.00 0.00 0.00 3.67
2738 3040 3.577919 TCTCTAAGCATCTCCCCTAACC 58.422 50.000 0.00 0.00 0.00 2.85
2739 3041 5.615925 TTTCTCTAAGCATCTCCCCTAAC 57.384 43.478 0.00 0.00 0.00 2.34
2740 3042 7.931015 TTATTTCTCTAAGCATCTCCCCTAA 57.069 36.000 0.00 0.00 0.00 2.69
2741 3043 7.202102 GGTTTATTTCTCTAAGCATCTCCCCTA 60.202 40.741 0.00 0.00 0.00 3.53
2742 3044 6.409810 GGTTTATTTCTCTAAGCATCTCCCCT 60.410 42.308 0.00 0.00 0.00 4.79
2743 3045 5.765677 GGTTTATTTCTCTAAGCATCTCCCC 59.234 44.000 0.00 0.00 0.00 4.81
2744 3046 6.261158 GTGGTTTATTTCTCTAAGCATCTCCC 59.739 42.308 0.00 0.00 32.67 4.30
2745 3047 6.018669 CGTGGTTTATTTCTCTAAGCATCTCC 60.019 42.308 0.00 0.00 32.67 3.71
2746 3048 6.535508 ACGTGGTTTATTTCTCTAAGCATCTC 59.464 38.462 0.00 0.00 32.67 2.75
2747 3049 6.407202 ACGTGGTTTATTTCTCTAAGCATCT 58.593 36.000 0.00 0.00 32.67 2.90
2748 3050 6.663944 ACGTGGTTTATTTCTCTAAGCATC 57.336 37.500 0.00 0.00 32.67 3.91
2749 3051 7.448748 AAACGTGGTTTATTTCTCTAAGCAT 57.551 32.000 0.00 0.00 33.70 3.79
2750 3052 6.870971 AAACGTGGTTTATTTCTCTAAGCA 57.129 33.333 0.00 0.00 33.70 3.91
2773 3075 9.262358 GTACAAATAAACACCCATGCTTAAAAA 57.738 29.630 0.00 0.00 0.00 1.94
2774 3076 8.643324 AGTACAAATAAACACCCATGCTTAAAA 58.357 29.630 0.00 0.00 0.00 1.52
2775 3077 8.085296 CAGTACAAATAAACACCCATGCTTAAA 58.915 33.333 0.00 0.00 0.00 1.52
2776 3078 7.309499 CCAGTACAAATAAACACCCATGCTTAA 60.309 37.037 0.00 0.00 0.00 1.85
2777 3079 6.151985 CCAGTACAAATAAACACCCATGCTTA 59.848 38.462 0.00 0.00 0.00 3.09
2778 3080 5.047377 CCAGTACAAATAAACACCCATGCTT 60.047 40.000 0.00 0.00 0.00 3.91
2779 3081 4.462483 CCAGTACAAATAAACACCCATGCT 59.538 41.667 0.00 0.00 0.00 3.79
2780 3082 4.461081 TCCAGTACAAATAAACACCCATGC 59.539 41.667 0.00 0.00 0.00 4.06
2781 3083 5.475220 TGTCCAGTACAAATAAACACCCATG 59.525 40.000 0.00 0.00 34.29 3.66
2782 3084 5.636123 TGTCCAGTACAAATAAACACCCAT 58.364 37.500 0.00 0.00 34.29 4.00
2783 3085 5.050126 TGTCCAGTACAAATAAACACCCA 57.950 39.130 0.00 0.00 34.29 4.51
2784 3086 5.180680 GTCTGTCCAGTACAAATAAACACCC 59.819 44.000 0.00 0.00 37.74 4.61
2785 3087 5.107220 CGTCTGTCCAGTACAAATAAACACC 60.107 44.000 0.00 0.00 37.74 4.16
2786 3088 5.614013 GCGTCTGTCCAGTACAAATAAACAC 60.614 44.000 0.00 0.00 37.74 3.32
2787 3089 4.449743 GCGTCTGTCCAGTACAAATAAACA 59.550 41.667 0.00 0.00 37.74 2.83
2788 3090 4.689345 AGCGTCTGTCCAGTACAAATAAAC 59.311 41.667 0.00 0.00 37.74 2.01
2789 3091 4.890088 AGCGTCTGTCCAGTACAAATAAA 58.110 39.130 0.00 0.00 37.74 1.40
2790 3092 4.530710 AGCGTCTGTCCAGTACAAATAA 57.469 40.909 0.00 0.00 37.74 1.40
2791 3093 4.530710 AAGCGTCTGTCCAGTACAAATA 57.469 40.909 0.00 0.00 37.74 1.40
2792 3094 3.402628 AAGCGTCTGTCCAGTACAAAT 57.597 42.857 0.00 0.00 37.74 2.32
2793 3095 2.902705 AAGCGTCTGTCCAGTACAAA 57.097 45.000 0.00 0.00 37.74 2.83
2794 3096 4.530710 ATTAAGCGTCTGTCCAGTACAA 57.469 40.909 0.00 0.00 37.74 2.41
2795 3097 4.530710 AATTAAGCGTCTGTCCAGTACA 57.469 40.909 0.00 0.00 36.42 2.90
2796 3098 5.041940 CCTAATTAAGCGTCTGTCCAGTAC 58.958 45.833 0.00 0.00 0.00 2.73
2797 3099 4.441079 GCCTAATTAAGCGTCTGTCCAGTA 60.441 45.833 0.00 0.00 0.00 2.74
2798 3100 3.679083 GCCTAATTAAGCGTCTGTCCAGT 60.679 47.826 0.00 0.00 0.00 4.00
2799 3101 2.866762 GCCTAATTAAGCGTCTGTCCAG 59.133 50.000 0.00 0.00 0.00 3.86
2800 3102 2.235155 TGCCTAATTAAGCGTCTGTCCA 59.765 45.455 1.75 0.00 0.00 4.02
2801 3103 2.901249 TGCCTAATTAAGCGTCTGTCC 58.099 47.619 1.75 0.00 0.00 4.02
2802 3104 4.717188 GATGCCTAATTAAGCGTCTGTC 57.283 45.455 17.48 1.83 40.99 3.51
2806 3108 3.991121 GGAGAGATGCCTAATTAAGCGTC 59.009 47.826 17.17 17.17 43.85 5.19
2807 3109 3.643792 AGGAGAGATGCCTAATTAAGCGT 59.356 43.478 0.24 0.24 32.92 5.07
2808 3110 4.264460 AGGAGAGATGCCTAATTAAGCG 57.736 45.455 1.75 0.00 32.92 4.68
2809 3111 8.299990 TCTATAGGAGAGATGCCTAATTAAGC 57.700 38.462 0.00 0.00 41.10 3.09
2828 3130 5.808366 TGGTCCAGTGCCTATTTCTATAG 57.192 43.478 0.00 0.00 34.67 1.31
2829 3131 5.843969 TCATGGTCCAGTGCCTATTTCTATA 59.156 40.000 0.00 0.00 0.00 1.31
2830 3132 4.660303 TCATGGTCCAGTGCCTATTTCTAT 59.340 41.667 0.00 0.00 0.00 1.98
2831 3133 4.037222 TCATGGTCCAGTGCCTATTTCTA 58.963 43.478 0.00 0.00 0.00 2.10
2832 3134 2.846206 TCATGGTCCAGTGCCTATTTCT 59.154 45.455 0.00 0.00 0.00 2.52
2833 3135 3.281727 TCATGGTCCAGTGCCTATTTC 57.718 47.619 0.00 0.00 0.00 2.17
2834 3136 3.737559 TTCATGGTCCAGTGCCTATTT 57.262 42.857 0.00 0.00 0.00 1.40
2835 3137 3.737559 TTTCATGGTCCAGTGCCTATT 57.262 42.857 0.00 0.00 0.00 1.73
2836 3138 3.959495 ATTTCATGGTCCAGTGCCTAT 57.041 42.857 0.00 0.00 0.00 2.57
2837 3139 3.136443 CCTATTTCATGGTCCAGTGCCTA 59.864 47.826 0.00 0.00 0.00 3.93
2838 3140 2.092212 CCTATTTCATGGTCCAGTGCCT 60.092 50.000 0.00 0.00 0.00 4.75
2839 3141 2.301346 CCTATTTCATGGTCCAGTGCC 58.699 52.381 0.00 0.00 0.00 5.01
2840 3142 1.678101 GCCTATTTCATGGTCCAGTGC 59.322 52.381 0.00 0.00 0.00 4.40
2841 3143 2.684881 GTGCCTATTTCATGGTCCAGTG 59.315 50.000 0.00 0.00 0.00 3.66
2842 3144 2.578021 AGTGCCTATTTCATGGTCCAGT 59.422 45.455 0.00 0.00 0.00 4.00
2843 3145 3.287867 AGTGCCTATTTCATGGTCCAG 57.712 47.619 0.00 0.00 0.00 3.86
2844 3146 3.737559 AAGTGCCTATTTCATGGTCCA 57.262 42.857 0.00 0.00 0.00 4.02
2845 3147 3.763897 ACAAAGTGCCTATTTCATGGTCC 59.236 43.478 0.00 0.00 0.00 4.46
2846 3148 6.509418 TTACAAAGTGCCTATTTCATGGTC 57.491 37.500 0.00 0.00 0.00 4.02
2847 3149 6.909550 TTTACAAAGTGCCTATTTCATGGT 57.090 33.333 0.00 0.00 0.00 3.55
2848 3150 8.776376 AATTTTACAAAGTGCCTATTTCATGG 57.224 30.769 0.00 0.00 0.00 3.66
2850 3152 9.218440 CCAAATTTTACAAAGTGCCTATTTCAT 57.782 29.630 0.00 0.00 0.00 2.57
2851 3153 7.172361 GCCAAATTTTACAAAGTGCCTATTTCA 59.828 33.333 0.00 0.00 0.00 2.69
2852 3154 7.518161 GCCAAATTTTACAAAGTGCCTATTTC 58.482 34.615 0.00 0.00 0.00 2.17
2853 3155 6.147000 CGCCAAATTTTACAAAGTGCCTATTT 59.853 34.615 0.00 0.00 0.00 1.40
2854 3156 5.637387 CGCCAAATTTTACAAAGTGCCTATT 59.363 36.000 0.00 0.00 0.00 1.73
2855 3157 5.047660 TCGCCAAATTTTACAAAGTGCCTAT 60.048 36.000 0.00 0.00 0.00 2.57
2856 3158 4.278669 TCGCCAAATTTTACAAAGTGCCTA 59.721 37.500 0.00 0.00 0.00 3.93
2857 3159 3.068873 TCGCCAAATTTTACAAAGTGCCT 59.931 39.130 0.00 0.00 0.00 4.75
2858 3160 3.385577 TCGCCAAATTTTACAAAGTGCC 58.614 40.909 0.00 0.00 0.00 5.01
2859 3161 5.405269 AGAATCGCCAAATTTTACAAAGTGC 59.595 36.000 0.00 0.00 0.00 4.40
2860 3162 7.406799 AAGAATCGCCAAATTTTACAAAGTG 57.593 32.000 0.00 0.00 0.00 3.16
2861 3163 8.334632 CAAAAGAATCGCCAAATTTTACAAAGT 58.665 29.630 0.00 0.00 0.00 2.66
2862 3164 7.321034 GCAAAAGAATCGCCAAATTTTACAAAG 59.679 33.333 0.00 0.00 0.00 2.77
2863 3165 7.011857 AGCAAAAGAATCGCCAAATTTTACAAA 59.988 29.630 0.00 0.00 0.00 2.83
2864 3166 6.481644 AGCAAAAGAATCGCCAAATTTTACAA 59.518 30.769 0.00 0.00 0.00 2.41
2865 3167 5.988561 AGCAAAAGAATCGCCAAATTTTACA 59.011 32.000 0.00 0.00 0.00 2.41
2866 3168 6.073819 ACAGCAAAAGAATCGCCAAATTTTAC 60.074 34.615 0.00 0.00 0.00 2.01
2867 3169 5.988561 ACAGCAAAAGAATCGCCAAATTTTA 59.011 32.000 0.00 0.00 0.00 1.52
2868 3170 4.815846 ACAGCAAAAGAATCGCCAAATTTT 59.184 33.333 0.00 0.00 0.00 1.82
2869 3171 4.211794 CACAGCAAAAGAATCGCCAAATTT 59.788 37.500 0.00 0.00 0.00 1.82
2870 3172 3.742369 CACAGCAAAAGAATCGCCAAATT 59.258 39.130 0.00 0.00 0.00 1.82
2871 3173 3.243839 ACACAGCAAAAGAATCGCCAAAT 60.244 39.130 0.00 0.00 0.00 2.32
2872 3174 2.100584 ACACAGCAAAAGAATCGCCAAA 59.899 40.909 0.00 0.00 0.00 3.28
2873 3175 1.680735 ACACAGCAAAAGAATCGCCAA 59.319 42.857 0.00 0.00 0.00 4.52
2874 3176 1.001487 CACACAGCAAAAGAATCGCCA 60.001 47.619 0.00 0.00 0.00 5.69
2875 3177 1.689959 CACACAGCAAAAGAATCGCC 58.310 50.000 0.00 0.00 0.00 5.54
2876 3178 1.055338 GCACACAGCAAAAGAATCGC 58.945 50.000 0.00 0.00 44.79 4.58
2887 3189 3.443099 AGAAAAGAAAAGGCACACAGC 57.557 42.857 0.00 0.00 44.65 4.40
2888 3190 4.567959 CCAAAGAAAAGAAAAGGCACACAG 59.432 41.667 0.00 0.00 0.00 3.66
2889 3191 4.020662 ACCAAAGAAAAGAAAAGGCACACA 60.021 37.500 0.00 0.00 0.00 3.72
2890 3192 4.503910 ACCAAAGAAAAGAAAAGGCACAC 58.496 39.130 0.00 0.00 0.00 3.82
2891 3193 4.817318 ACCAAAGAAAAGAAAAGGCACA 57.183 36.364 0.00 0.00 0.00 4.57
2892 3194 7.042051 GGAATAACCAAAGAAAAGAAAAGGCAC 60.042 37.037 0.00 0.00 38.79 5.01
2893 3195 6.989759 GGAATAACCAAAGAAAAGAAAAGGCA 59.010 34.615 0.00 0.00 38.79 4.75
2894 3196 7.217200 AGGAATAACCAAAGAAAAGAAAAGGC 58.783 34.615 0.00 0.00 42.04 4.35
2895 3197 9.045223 CAAGGAATAACCAAAGAAAAGAAAAGG 57.955 33.333 0.00 0.00 42.04 3.11
2896 3198 9.045223 CCAAGGAATAACCAAAGAAAAGAAAAG 57.955 33.333 0.00 0.00 42.04 2.27
2897 3199 8.544622 ACCAAGGAATAACCAAAGAAAAGAAAA 58.455 29.630 0.00 0.00 42.04 2.29
2898 3200 8.084985 ACCAAGGAATAACCAAAGAAAAGAAA 57.915 30.769 0.00 0.00 42.04 2.52
2899 3201 7.669089 ACCAAGGAATAACCAAAGAAAAGAA 57.331 32.000 0.00 0.00 42.04 2.52
2900 3202 7.343316 TGAACCAAGGAATAACCAAAGAAAAGA 59.657 33.333 0.00 0.00 42.04 2.52
2901 3203 7.496747 TGAACCAAGGAATAACCAAAGAAAAG 58.503 34.615 0.00 0.00 42.04 2.27
2902 3204 7.425224 TGAACCAAGGAATAACCAAAGAAAA 57.575 32.000 0.00 0.00 42.04 2.29
2903 3205 7.425224 TTGAACCAAGGAATAACCAAAGAAA 57.575 32.000 0.00 0.00 42.04 2.52
2904 3206 7.610580 ATTGAACCAAGGAATAACCAAAGAA 57.389 32.000 0.00 0.00 42.04 2.52
2905 3207 7.508977 AGAATTGAACCAAGGAATAACCAAAGA 59.491 33.333 0.00 0.00 42.04 2.52
2921 3223 3.309954 CGTAGCTTGGCTAGAATTGAACC 59.690 47.826 0.00 0.00 42.11 3.62
2932 3234 2.084546 GAACAATTCCGTAGCTTGGCT 58.915 47.619 0.00 0.00 43.41 4.75
2933 3235 1.810151 TGAACAATTCCGTAGCTTGGC 59.190 47.619 0.00 0.00 0.00 4.52
2936 3238 7.173218 CCATATACATGAACAATTCCGTAGCTT 59.827 37.037 0.00 0.00 33.67 3.74
2953 3255 4.141181 AGACATGCACAACCCCATATACAT 60.141 41.667 0.00 0.00 0.00 2.29
3052 3359 3.751518 TCCAGGAGTAGGTTTTTGAAGC 58.248 45.455 0.00 0.00 0.00 3.86
3053 3360 6.374613 GGTAATCCAGGAGTAGGTTTTTGAAG 59.625 42.308 0.00 0.00 0.00 3.02
3054 3361 6.045106 AGGTAATCCAGGAGTAGGTTTTTGAA 59.955 38.462 0.00 0.00 35.89 2.69
3055 3362 5.550403 AGGTAATCCAGGAGTAGGTTTTTGA 59.450 40.000 0.00 0.00 35.89 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.