Multiple sequence alignment - TraesCS1A01G341600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G341600 | chr1A | 100.000 | 3939 | 0 | 0 | 1 | 3939 | 531225405 | 531221467 | 0.000000e+00 | 7275 |
1 | TraesCS1A01G341600 | chr1D | 94.335 | 3336 | 109 | 27 | 1 | 3302 | 432789121 | 432785832 | 0.000000e+00 | 5040 |
2 | TraesCS1A01G341600 | chr1D | 84.982 | 566 | 53 | 14 | 3303 | 3857 | 432785740 | 432785196 | 2.680000e-151 | 545 |
3 | TraesCS1A01G341600 | chr1B | 96.815 | 2606 | 70 | 11 | 1 | 2599 | 584142650 | 584140051 | 0.000000e+00 | 4340 |
4 | TraesCS1A01G341600 | chr1B | 84.828 | 725 | 39 | 31 | 2623 | 3297 | 584139714 | 584139011 | 0.000000e+00 | 664 |
5 | TraesCS1A01G341600 | chr1B | 85.980 | 592 | 44 | 14 | 3304 | 3889 | 584138916 | 584138358 | 7.290000e-167 | 597 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G341600 | chr1A | 531221467 | 531225405 | 3938 | True | 7275.0 | 7275 | 100.000000 | 1 | 3939 | 1 | chr1A.!!$R1 | 3938 |
1 | TraesCS1A01G341600 | chr1D | 432785196 | 432789121 | 3925 | True | 2792.5 | 5040 | 89.658500 | 1 | 3857 | 2 | chr1D.!!$R1 | 3856 |
2 | TraesCS1A01G341600 | chr1B | 584138358 | 584142650 | 4292 | True | 1867.0 | 4340 | 89.207667 | 1 | 3889 | 3 | chr1B.!!$R1 | 3888 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
873 | 876 | 0.687354 | GAGGAACAGTGAAGCCTCCA | 59.313 | 55.000 | 15.26 | 0.0 | 40.79 | 3.86 | F |
1915 | 1919 | 1.673920 | TCAGTTTCGTGGGTGAAAAGC | 59.326 | 47.619 | 0.00 | 0.0 | 39.40 | 3.51 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2036 | 2040 | 0.323178 | AGCTTTCTGGTGGCTCATGG | 60.323 | 55.0 | 0.0 | 0.0 | 0.00 | 3.66 | R |
3515 | 4000 | 0.036732 | CCAGCTTCAGCCTACCACAA | 59.963 | 55.0 | 0.0 | 0.0 | 43.38 | 3.33 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
110 | 111 | 7.611467 | ACCACATTATGCTTGAACTTTGAGATA | 59.389 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
265 | 266 | 2.161855 | TGAGCCACCACATGAAACATC | 58.838 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
344 | 345 | 2.352225 | GCTCAGACCGAGGCATGTATAG | 60.352 | 54.545 | 0.00 | 0.00 | 42.55 | 1.31 |
419 | 420 | 3.544684 | CCCTCGATGAATGACCATTGAA | 58.455 | 45.455 | 0.00 | 0.00 | 36.73 | 2.69 |
515 | 516 | 1.832998 | TCACATGCAGATGCTGACCTA | 59.167 | 47.619 | 6.35 | 0.00 | 42.66 | 3.08 |
529 | 530 | 9.044646 | AGATGCTGACCTATATCTGATTATGTT | 57.955 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
873 | 876 | 0.687354 | GAGGAACAGTGAAGCCTCCA | 59.313 | 55.000 | 15.26 | 0.00 | 40.79 | 3.86 |
1082 | 1085 | 3.181509 | GCTTGTGCTCTGTTCATCTCATG | 60.182 | 47.826 | 0.00 | 0.00 | 36.03 | 3.07 |
1169 | 1172 | 2.288666 | TGTCACTTTGCACCTCTGTTC | 58.711 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
1267 | 1271 | 3.196007 | TCCGCTTTTTCTTTATGTGCG | 57.804 | 42.857 | 0.00 | 0.00 | 41.30 | 5.34 |
1272 | 1276 | 3.121025 | GCTTTTTCTTTATGTGCGGCAAC | 60.121 | 43.478 | 3.23 | 0.00 | 0.00 | 4.17 |
1273 | 1277 | 3.717400 | TTTTCTTTATGTGCGGCAACA | 57.283 | 38.095 | 3.23 | 5.96 | 0.00 | 3.33 |
1287 | 1291 | 5.342259 | GTGCGGCAACACTTTAAGAATTAAG | 59.658 | 40.000 | 3.23 | 0.00 | 42.24 | 1.85 |
1289 | 1293 | 6.072175 | TGCGGCAACACTTTAAGAATTAAGAT | 60.072 | 34.615 | 0.00 | 0.00 | 42.24 | 2.40 |
1290 | 1294 | 6.806739 | GCGGCAACACTTTAAGAATTAAGATT | 59.193 | 34.615 | 0.00 | 0.00 | 42.24 | 2.40 |
1291 | 1295 | 7.328493 | GCGGCAACACTTTAAGAATTAAGATTT | 59.672 | 33.333 | 0.00 | 0.00 | 42.24 | 2.17 |
1665 | 1669 | 3.009033 | AGGCAGCTGTTTTAGGTATGTCA | 59.991 | 43.478 | 16.64 | 0.00 | 34.81 | 3.58 |
1915 | 1919 | 1.673920 | TCAGTTTCGTGGGTGAAAAGC | 59.326 | 47.619 | 0.00 | 0.00 | 39.40 | 3.51 |
2036 | 2040 | 6.198966 | CCAAACAAGCTGTTGACTATTTGTTC | 59.801 | 38.462 | 6.62 | 0.00 | 40.14 | 3.18 |
2060 | 2064 | 2.338785 | GCCACCAGAAAGCTCCTGC | 61.339 | 63.158 | 9.81 | 0.00 | 40.05 | 4.85 |
2130 | 2134 | 4.455877 | GTGTCCTCAATTCTCGAAACCATT | 59.544 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2228 | 2233 | 7.399245 | TTTGTTTTACTTTAAGTGCCTCAGT | 57.601 | 32.000 | 8.00 | 0.00 | 0.00 | 3.41 |
2237 | 2242 | 1.888215 | AGTGCCTCAGTGAATGTGTG | 58.112 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2243 | 2248 | 1.948834 | CTCAGTGAATGTGTGCACCAA | 59.051 | 47.619 | 15.69 | 2.17 | 35.67 | 3.67 |
2270 | 2275 | 8.409371 | AGTTTTTCTTTTTCTTGACAGAGATCC | 58.591 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
2337 | 2342 | 5.470437 | TCATGTGCGTCCATTTTACAACTAA | 59.530 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2361 | 2366 | 0.179076 | TGGATGCATGTGGAGTAGCG | 60.179 | 55.000 | 2.46 | 0.00 | 0.00 | 4.26 |
2441 | 2449 | 3.691118 | GCCATGACATAAAGAGCTGACAA | 59.309 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
2586 | 2596 | 3.441922 | GGAGAAGAAAATGCTGAAGGGTC | 59.558 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
2603 | 2613 | 3.041946 | GGGTCTCTCTCTCTCTCTCTCT | 58.958 | 54.545 | 0.00 | 0.00 | 0.00 | 3.10 |
2604 | 2614 | 3.070302 | GGGTCTCTCTCTCTCTCTCTCTC | 59.930 | 56.522 | 0.00 | 0.00 | 0.00 | 3.20 |
2605 | 2615 | 3.964031 | GGTCTCTCTCTCTCTCTCTCTCT | 59.036 | 52.174 | 0.00 | 0.00 | 0.00 | 3.10 |
2606 | 2616 | 4.038642 | GGTCTCTCTCTCTCTCTCTCTCTC | 59.961 | 54.167 | 0.00 | 0.00 | 0.00 | 3.20 |
2607 | 2617 | 4.892934 | GTCTCTCTCTCTCTCTCTCTCTCT | 59.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2608 | 2618 | 5.009610 | GTCTCTCTCTCTCTCTCTCTCTCTC | 59.990 | 52.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2609 | 2619 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2610 | 2620 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2611 | 2621 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2612 | 2622 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2613 | 2623 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2614 | 2624 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2615 | 2625 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2616 | 2626 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2617 | 2627 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2618 | 2628 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2619 | 2629 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2620 | 2630 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2695 | 3018 | 5.680408 | GCATACAGGTTAATCACTACCGACA | 60.680 | 44.000 | 0.00 | 0.00 | 39.46 | 4.35 |
2718 | 3041 | 8.425577 | ACACGTCTTCTTTCATCCATATTAAG | 57.574 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
2823 | 3146 | 7.052873 | ACTTCCAGGTAATCTTCATGAATCAG | 58.947 | 38.462 | 8.96 | 0.00 | 0.00 | 2.90 |
2831 | 3176 | 6.939132 | AATCTTCATGAATCAGTCATCACC | 57.061 | 37.500 | 8.96 | 0.00 | 44.01 | 4.02 |
2832 | 3177 | 5.425196 | TCTTCATGAATCAGTCATCACCA | 57.575 | 39.130 | 8.96 | 0.00 | 44.01 | 4.17 |
2856 | 3201 | 0.038251 | TATCCGATCTCGCCATGTGC | 60.038 | 55.000 | 0.00 | 0.00 | 38.18 | 4.57 |
2998 | 3352 | 2.332063 | ATACGGGATTGTTGCAGAGG | 57.668 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3032 | 3386 | 3.005539 | AGGAGACATGCCTGGCGT | 61.006 | 61.111 | 14.98 | 11.57 | 34.62 | 5.68 |
3059 | 3429 | 6.260936 | AGTTCATTAATGCCTGAAAGATACCG | 59.739 | 38.462 | 10.76 | 0.00 | 34.07 | 4.02 |
3175 | 3548 | 0.596600 | ATGTCCGCGCTTATGTACGG | 60.597 | 55.000 | 5.56 | 0.00 | 46.97 | 4.02 |
3211 | 3584 | 2.096713 | CGAGCTTGCAAGTGTCTGTTAC | 60.097 | 50.000 | 26.55 | 7.50 | 0.00 | 2.50 |
3212 | 3585 | 1.867233 | AGCTTGCAAGTGTCTGTTACG | 59.133 | 47.619 | 26.55 | 0.00 | 0.00 | 3.18 |
3213 | 3586 | 1.069906 | GCTTGCAAGTGTCTGTTACGG | 60.070 | 52.381 | 26.55 | 0.00 | 0.00 | 4.02 |
3215 | 3588 | 2.148916 | TGCAAGTGTCTGTTACGGAG | 57.851 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3218 | 3591 | 3.257375 | TGCAAGTGTCTGTTACGGAGTAT | 59.743 | 43.478 | 0.00 | 0.00 | 45.21 | 2.12 |
3219 | 3592 | 4.243270 | GCAAGTGTCTGTTACGGAGTATT | 58.757 | 43.478 | 0.00 | 0.00 | 45.21 | 1.89 |
3220 | 3593 | 5.047872 | TGCAAGTGTCTGTTACGGAGTATTA | 60.048 | 40.000 | 0.00 | 0.00 | 45.21 | 0.98 |
3221 | 3594 | 5.865552 | GCAAGTGTCTGTTACGGAGTATTAA | 59.134 | 40.000 | 0.00 | 0.00 | 45.21 | 1.40 |
3222 | 3595 | 6.534079 | GCAAGTGTCTGTTACGGAGTATTAAT | 59.466 | 38.462 | 0.00 | 0.00 | 45.21 | 1.40 |
3223 | 3596 | 7.064253 | GCAAGTGTCTGTTACGGAGTATTAATT | 59.936 | 37.037 | 0.00 | 0.00 | 45.21 | 1.40 |
3224 | 3597 | 9.577110 | CAAGTGTCTGTTACGGAGTATTAATTA | 57.423 | 33.333 | 0.00 | 0.00 | 45.21 | 1.40 |
3272 | 3648 | 2.222007 | TGAATGTTTGCACAACAGCC | 57.778 | 45.000 | 16.01 | 11.72 | 36.16 | 4.85 |
3297 | 3673 | 7.917505 | CCAACTGGAAAGCAATAGTCATATTTC | 59.082 | 37.037 | 0.00 | 0.00 | 37.39 | 2.17 |
3300 | 3676 | 9.905713 | ACTGGAAAGCAATAGTCATATTTCTTA | 57.094 | 29.630 | 0.00 | 0.00 | 34.89 | 2.10 |
3352 | 3823 | 8.205131 | TCTATTACTGGCCGTTCTTTTTATTC | 57.795 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
3427 | 3899 | 1.448119 | GCTTCGCCTTTATCTGCCCC | 61.448 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
3441 | 3926 | 1.281867 | CTGCCCCTATTTGTCCAGACA | 59.718 | 52.381 | 0.00 | 0.00 | 39.98 | 3.41 |
3452 | 3937 | 2.997315 | CCAGACAGCGAGGGGTCA | 60.997 | 66.667 | 0.00 | 0.00 | 36.50 | 4.02 |
3453 | 3938 | 2.362369 | CCAGACAGCGAGGGGTCAT | 61.362 | 63.158 | 0.00 | 0.00 | 36.50 | 3.06 |
3454 | 3939 | 1.599047 | CAGACAGCGAGGGGTCATT | 59.401 | 57.895 | 0.00 | 0.00 | 36.50 | 2.57 |
3455 | 3940 | 0.460987 | CAGACAGCGAGGGGTCATTC | 60.461 | 60.000 | 0.00 | 0.00 | 36.50 | 2.67 |
3456 | 3941 | 1.153349 | GACAGCGAGGGGTCATTCC | 60.153 | 63.158 | 0.00 | 0.00 | 34.22 | 3.01 |
3467 | 3952 | 0.039527 | GGTCATTCCGTTGTTGTGCC | 60.040 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3477 | 3962 | 2.540769 | CGTTGTTGTGCCGAGTTGAAAT | 60.541 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
3478 | 3963 | 3.443976 | GTTGTTGTGCCGAGTTGAAATT | 58.556 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
3531 | 4016 | 1.340017 | TGGATTGTGGTAGGCTGAAGC | 60.340 | 52.381 | 0.00 | 0.00 | 41.14 | 3.86 |
3589 | 4074 | 4.998788 | TCTAATCAACGTCTGATGGACAG | 58.001 | 43.478 | 12.06 | 0.00 | 44.43 | 3.51 |
3656 | 4142 | 5.477510 | CATGACTGAGCTACCAAGGATATC | 58.522 | 45.833 | 0.00 | 0.00 | 0.00 | 1.63 |
3657 | 4143 | 4.809193 | TGACTGAGCTACCAAGGATATCT | 58.191 | 43.478 | 2.05 | 0.00 | 0.00 | 1.98 |
3658 | 4144 | 4.830046 | TGACTGAGCTACCAAGGATATCTC | 59.170 | 45.833 | 2.05 | 0.00 | 0.00 | 2.75 |
3686 | 4172 | 0.975040 | TGCCAAACTTGTTGCAGGGT | 60.975 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3690 | 4176 | 2.223711 | CCAAACTTGTTGCAGGGTGTAC | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3697 | 4183 | 1.812571 | GTTGCAGGGTGTACTGATTGG | 59.187 | 52.381 | 0.00 | 0.00 | 40.97 | 3.16 |
3715 | 4205 | 0.601057 | GGTTTGTTTACATGCGCCCT | 59.399 | 50.000 | 4.18 | 0.00 | 0.00 | 5.19 |
3716 | 4206 | 1.402325 | GGTTTGTTTACATGCGCCCTC | 60.402 | 52.381 | 4.18 | 0.00 | 0.00 | 4.30 |
3717 | 4207 | 1.268352 | GTTTGTTTACATGCGCCCTCA | 59.732 | 47.619 | 4.18 | 0.00 | 0.00 | 3.86 |
3718 | 4208 | 0.878416 | TTGTTTACATGCGCCCTCAC | 59.122 | 50.000 | 4.18 | 0.00 | 0.00 | 3.51 |
3734 | 4224 | 2.594592 | ACGCTTTGTGGCCTGACC | 60.595 | 61.111 | 3.32 | 0.00 | 39.84 | 4.02 |
3803 | 4293 | 2.084546 | GGAAACCAAGATGAACTCCCG | 58.915 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
3804 | 4294 | 1.468914 | GAAACCAAGATGAACTCCCGC | 59.531 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
3805 | 4295 | 0.322546 | AACCAAGATGAACTCCCGCC | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3806 | 4296 | 1.201429 | ACCAAGATGAACTCCCGCCT | 61.201 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
3807 | 4297 | 0.462759 | CCAAGATGAACTCCCGCCTC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
3808 | 4298 | 0.462759 | CAAGATGAACTCCCGCCTCC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3809 | 4299 | 1.627297 | AAGATGAACTCCCGCCTCCC | 61.627 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3810 | 4300 | 3.447025 | GATGAACTCCCGCCTCCCG | 62.447 | 68.421 | 0.00 | 0.00 | 0.00 | 5.14 |
3826 | 4317 | 2.345991 | CGGTGCCGAAGAAGGGAA | 59.654 | 61.111 | 4.35 | 0.00 | 42.83 | 3.97 |
3828 | 4319 | 1.375326 | GGTGCCGAAGAAGGGAAGT | 59.625 | 57.895 | 0.00 | 0.00 | 31.97 | 3.01 |
3833 | 4324 | 1.946283 | GCCGAAGAAGGGAAGTGGAAG | 60.946 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
3836 | 4327 | 3.496160 | CCGAAGAAGGGAAGTGGAAGAAA | 60.496 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
3847 | 4338 | 0.882927 | TGGAAGAAACTTCGCACCGG | 60.883 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
3848 | 4339 | 0.601841 | GGAAGAAACTTCGCACCGGA | 60.602 | 55.000 | 9.46 | 0.00 | 0.00 | 5.14 |
3849 | 4340 | 0.790814 | GAAGAAACTTCGCACCGGAG | 59.209 | 55.000 | 9.46 | 0.00 | 38.61 | 4.63 |
3877 | 4368 | 2.042831 | GCCTCTGCACGCAGGAAAT | 61.043 | 57.895 | 18.47 | 0.00 | 43.75 | 2.17 |
3881 | 4372 | 0.250684 | TCTGCACGCAGGAAATCCAA | 60.251 | 50.000 | 18.47 | 0.00 | 43.75 | 3.53 |
3889 | 4380 | 2.230992 | CGCAGGAAATCCAATTGACCAA | 59.769 | 45.455 | 7.12 | 0.00 | 38.89 | 3.67 |
3890 | 4381 | 3.305950 | CGCAGGAAATCCAATTGACCAAA | 60.306 | 43.478 | 7.12 | 0.00 | 38.89 | 3.28 |
3891 | 4382 | 4.640364 | GCAGGAAATCCAATTGACCAAAA | 58.360 | 39.130 | 7.12 | 0.00 | 38.89 | 2.44 |
3892 | 4383 | 5.062528 | GCAGGAAATCCAATTGACCAAAAA | 58.937 | 37.500 | 7.12 | 0.00 | 38.89 | 1.94 |
3893 | 4384 | 5.706833 | GCAGGAAATCCAATTGACCAAAAAT | 59.293 | 36.000 | 7.12 | 0.00 | 38.89 | 1.82 |
3894 | 4385 | 6.878389 | GCAGGAAATCCAATTGACCAAAAATA | 59.122 | 34.615 | 7.12 | 0.00 | 38.89 | 1.40 |
3895 | 4386 | 7.148423 | GCAGGAAATCCAATTGACCAAAAATAC | 60.148 | 37.037 | 7.12 | 0.00 | 38.89 | 1.89 |
3896 | 4387 | 7.877097 | CAGGAAATCCAATTGACCAAAAATACA | 59.123 | 33.333 | 7.12 | 0.00 | 38.89 | 2.29 |
3897 | 4388 | 7.877612 | AGGAAATCCAATTGACCAAAAATACAC | 59.122 | 33.333 | 7.12 | 0.00 | 38.89 | 2.90 |
3898 | 4389 | 7.148656 | GGAAATCCAATTGACCAAAAATACACG | 60.149 | 37.037 | 7.12 | 0.00 | 35.64 | 4.49 |
3899 | 4390 | 5.776173 | TCCAATTGACCAAAAATACACGT | 57.224 | 34.783 | 7.12 | 0.00 | 0.00 | 4.49 |
3900 | 4391 | 6.150396 | TCCAATTGACCAAAAATACACGTT | 57.850 | 33.333 | 7.12 | 0.00 | 0.00 | 3.99 |
3901 | 4392 | 6.574350 | TCCAATTGACCAAAAATACACGTTT | 58.426 | 32.000 | 7.12 | 0.00 | 0.00 | 3.60 |
3902 | 4393 | 6.477033 | TCCAATTGACCAAAAATACACGTTTG | 59.523 | 34.615 | 7.12 | 0.00 | 35.03 | 2.93 |
3903 | 4394 | 6.477033 | CCAATTGACCAAAAATACACGTTTGA | 59.523 | 34.615 | 7.12 | 0.00 | 36.96 | 2.69 |
3904 | 4395 | 7.334009 | CAATTGACCAAAAATACACGTTTGAC | 58.666 | 34.615 | 0.00 | 0.00 | 36.96 | 3.18 |
3905 | 4396 | 4.922719 | TGACCAAAAATACACGTTTGACC | 58.077 | 39.130 | 0.00 | 0.00 | 36.96 | 4.02 |
3906 | 4397 | 4.398358 | TGACCAAAAATACACGTTTGACCA | 59.602 | 37.500 | 0.00 | 0.00 | 36.96 | 4.02 |
3907 | 4398 | 5.105877 | TGACCAAAAATACACGTTTGACCAA | 60.106 | 36.000 | 0.00 | 0.00 | 36.96 | 3.67 |
3908 | 4399 | 5.344884 | ACCAAAAATACACGTTTGACCAAG | 58.655 | 37.500 | 0.00 | 0.00 | 36.96 | 3.61 |
3909 | 4400 | 5.125739 | ACCAAAAATACACGTTTGACCAAGA | 59.874 | 36.000 | 0.00 | 0.00 | 36.96 | 3.02 |
3910 | 4401 | 6.037098 | CCAAAAATACACGTTTGACCAAGAA | 58.963 | 36.000 | 0.00 | 0.00 | 36.96 | 2.52 |
3911 | 4402 | 6.699642 | CCAAAAATACACGTTTGACCAAGAAT | 59.300 | 34.615 | 0.00 | 0.00 | 36.96 | 2.40 |
3912 | 4403 | 7.863375 | CCAAAAATACACGTTTGACCAAGAATA | 59.137 | 33.333 | 0.00 | 0.00 | 36.96 | 1.75 |
3913 | 4404 | 9.405587 | CAAAAATACACGTTTGACCAAGAATAT | 57.594 | 29.630 | 0.00 | 0.00 | 36.96 | 1.28 |
3914 | 4405 | 9.974980 | AAAAATACACGTTTGACCAAGAATATT | 57.025 | 25.926 | 0.00 | 0.00 | 0.00 | 1.28 |
3915 | 4406 | 8.964420 | AAATACACGTTTGACCAAGAATATTG | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
3916 | 4407 | 7.915293 | ATACACGTTTGACCAAGAATATTGA | 57.085 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3917 | 4408 | 6.627395 | ACACGTTTGACCAAGAATATTGAA | 57.373 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
3918 | 4409 | 7.033530 | ACACGTTTGACCAAGAATATTGAAA | 57.966 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3919 | 4410 | 7.484975 | ACACGTTTGACCAAGAATATTGAAAA | 58.515 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
3920 | 4411 | 7.976734 | ACACGTTTGACCAAGAATATTGAAAAA | 59.023 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
110 | 111 | 8.508883 | TGGTATAACAAAACTAGTGTTTGTGT | 57.491 | 30.769 | 24.20 | 19.98 | 44.70 | 3.72 |
290 | 291 | 6.718454 | AGTCCAAGAATCAAGACAATGAACAT | 59.282 | 34.615 | 0.00 | 0.00 | 32.06 | 2.71 |
310 | 311 | 2.103373 | GTCTGAGCATACTGGAGTCCA | 58.897 | 52.381 | 12.40 | 12.40 | 0.00 | 4.02 |
344 | 345 | 5.652014 | TGAGGAACATTTACATGGGTTCATC | 59.348 | 40.000 | 16.71 | 16.71 | 45.83 | 2.92 |
816 | 819 | 8.787852 | GTGGAAGTGAAGATATTTTGAAGTTCT | 58.212 | 33.333 | 4.17 | 0.00 | 0.00 | 3.01 |
873 | 876 | 8.486210 | TGAACATCAGGTTGTTTATATAGCTCT | 58.514 | 33.333 | 0.00 | 0.00 | 40.63 | 4.09 |
1082 | 1085 | 4.865925 | TGCATGAACTTTGATGCTTAATGC | 59.134 | 37.500 | 13.48 | 0.00 | 46.03 | 3.56 |
1095 | 1098 | 5.356751 | TGACAAGTGTTTACTGCATGAACTT | 59.643 | 36.000 | 0.00 | 0.00 | 37.19 | 2.66 |
1169 | 1172 | 5.828299 | TTCTAAGGTGTGTCAAAGTTTGG | 57.172 | 39.130 | 15.47 | 0.00 | 0.00 | 3.28 |
1234 | 1238 | 6.977213 | AGAAAAAGCGGAATTTAAGCACTAA | 58.023 | 32.000 | 4.10 | 0.00 | 0.00 | 2.24 |
1291 | 1295 | 5.838521 | AGGAGAGTTCCAAAATGGCTAAAAA | 59.161 | 36.000 | 0.00 | 0.00 | 46.64 | 1.94 |
1295 | 1299 | 4.657814 | AAGGAGAGTTCCAAAATGGCTA | 57.342 | 40.909 | 0.00 | 0.00 | 46.64 | 3.93 |
1297 | 1301 | 4.281941 | AGAAAAGGAGAGTTCCAAAATGGC | 59.718 | 41.667 | 0.00 | 0.00 | 46.64 | 4.40 |
1548 | 1552 | 7.986085 | AGATACTGCTTAACAACAATTGACT | 57.014 | 32.000 | 13.59 | 0.00 | 0.00 | 3.41 |
1944 | 1948 | 6.634436 | CAGATTAAGTTCTGCAAACTTGTGAC | 59.366 | 38.462 | 24.73 | 16.95 | 40.38 | 3.67 |
1948 | 1952 | 6.638468 | GGTTCAGATTAAGTTCTGCAAACTTG | 59.362 | 38.462 | 24.73 | 15.08 | 42.37 | 3.16 |
2010 | 2014 | 5.127031 | ACAAATAGTCAACAGCTTGTTTGGT | 59.873 | 36.000 | 7.63 | 0.00 | 38.77 | 3.67 |
2036 | 2040 | 0.323178 | AGCTTTCTGGTGGCTCATGG | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2228 | 2233 | 3.883830 | AAACTTTGGTGCACACATTCA | 57.116 | 38.095 | 20.43 | 3.64 | 0.00 | 2.57 |
2237 | 2242 | 7.015289 | GTCAAGAAAAAGAAAAACTTTGGTGC | 58.985 | 34.615 | 0.00 | 0.00 | 46.55 | 5.01 |
2243 | 2248 | 9.794685 | GATCTCTGTCAAGAAAAAGAAAAACTT | 57.205 | 29.630 | 0.00 | 0.00 | 34.28 | 2.66 |
2270 | 2275 | 5.934625 | AGCAATATAAATCTCTGCGTTAGGG | 59.065 | 40.000 | 0.00 | 0.00 | 38.07 | 3.53 |
2337 | 2342 | 2.811410 | ACTCCACATGCATCCAACATT | 58.189 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
2361 | 2366 | 5.643379 | TCATCTGTAAAAGGCCAATGTTC | 57.357 | 39.130 | 5.01 | 0.00 | 0.00 | 3.18 |
2586 | 2596 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2603 | 2613 | 3.963374 | CAGGAGAGAGAGAGAGAGAGAGA | 59.037 | 52.174 | 0.00 | 0.00 | 0.00 | 3.10 |
2604 | 2614 | 3.494048 | GCAGGAGAGAGAGAGAGAGAGAG | 60.494 | 56.522 | 0.00 | 0.00 | 0.00 | 3.20 |
2605 | 2615 | 2.435805 | GCAGGAGAGAGAGAGAGAGAGA | 59.564 | 54.545 | 0.00 | 0.00 | 0.00 | 3.10 |
2606 | 2616 | 2.437281 | AGCAGGAGAGAGAGAGAGAGAG | 59.563 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
2607 | 2617 | 2.481441 | AGCAGGAGAGAGAGAGAGAGA | 58.519 | 52.381 | 0.00 | 0.00 | 0.00 | 3.10 |
2608 | 2618 | 3.287867 | AAGCAGGAGAGAGAGAGAGAG | 57.712 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
2609 | 2619 | 4.853468 | TTAAGCAGGAGAGAGAGAGAGA | 57.147 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
2610 | 2620 | 6.772716 | ACTAATTAAGCAGGAGAGAGAGAGAG | 59.227 | 42.308 | 0.00 | 0.00 | 0.00 | 3.20 |
2611 | 2621 | 6.668645 | ACTAATTAAGCAGGAGAGAGAGAGA | 58.331 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2612 | 2622 | 6.959639 | ACTAATTAAGCAGGAGAGAGAGAG | 57.040 | 41.667 | 0.00 | 0.00 | 0.00 | 3.20 |
2613 | 2623 | 6.097554 | CCAACTAATTAAGCAGGAGAGAGAGA | 59.902 | 42.308 | 0.00 | 0.00 | 0.00 | 3.10 |
2614 | 2624 | 6.127196 | ACCAACTAATTAAGCAGGAGAGAGAG | 60.127 | 42.308 | 0.00 | 0.00 | 0.00 | 3.20 |
2615 | 2625 | 5.721960 | ACCAACTAATTAAGCAGGAGAGAGA | 59.278 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2616 | 2626 | 5.983540 | ACCAACTAATTAAGCAGGAGAGAG | 58.016 | 41.667 | 0.00 | 0.00 | 0.00 | 3.20 |
2617 | 2627 | 6.374417 | AACCAACTAATTAAGCAGGAGAGA | 57.626 | 37.500 | 0.00 | 0.00 | 0.00 | 3.10 |
2618 | 2628 | 6.258947 | GCTAACCAACTAATTAAGCAGGAGAG | 59.741 | 42.308 | 0.00 | 0.00 | 0.00 | 3.20 |
2619 | 2629 | 6.113411 | GCTAACCAACTAATTAAGCAGGAGA | 58.887 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2620 | 2630 | 5.880332 | TGCTAACCAACTAATTAAGCAGGAG | 59.120 | 40.000 | 2.38 | 0.00 | 0.00 | 3.69 |
2733 | 3056 | 2.847327 | TCTGGAAAGTTCTCCTGCAG | 57.153 | 50.000 | 6.78 | 6.78 | 36.35 | 4.41 |
2823 | 3146 | 3.452755 | TCGGATACACATGGTGATGAC | 57.547 | 47.619 | 2.98 | 0.00 | 36.96 | 3.06 |
2831 | 3176 | 1.000274 | TGGCGAGATCGGATACACATG | 60.000 | 52.381 | 4.18 | 0.00 | 40.23 | 3.21 |
2832 | 3177 | 1.328279 | TGGCGAGATCGGATACACAT | 58.672 | 50.000 | 4.18 | 0.00 | 40.23 | 3.21 |
2856 | 3201 | 5.008019 | GTGTGGCCATGTCATGTTATTAGAG | 59.992 | 44.000 | 9.72 | 0.00 | 0.00 | 2.43 |
2988 | 3342 | 1.072331 | GGGTCTTCTTCCTCTGCAACA | 59.928 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
2998 | 3352 | 1.978580 | TCCTGTTCCTGGGTCTTCTTC | 59.021 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
3030 | 3384 | 7.072177 | TCTTTCAGGCATTAATGAACTAACG | 57.928 | 36.000 | 19.73 | 5.63 | 35.25 | 3.18 |
3031 | 3385 | 9.937175 | GTATCTTTCAGGCATTAATGAACTAAC | 57.063 | 33.333 | 19.73 | 0.00 | 35.25 | 2.34 |
3032 | 3386 | 9.120538 | GGTATCTTTCAGGCATTAATGAACTAA | 57.879 | 33.333 | 19.73 | 7.42 | 35.25 | 2.24 |
3086 | 3456 | 8.614814 | ACATGGTGCCCTTATGATTATATTACT | 58.385 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
3087 | 3457 | 8.807948 | ACATGGTGCCCTTATGATTATATTAC | 57.192 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
3090 | 3463 | 6.664816 | CCAACATGGTGCCCTTATGATTATAT | 59.335 | 38.462 | 4.81 | 0.00 | 31.35 | 0.86 |
3106 | 3479 | 5.356719 | ATCCAACAGGACACCAACATGGT | 62.357 | 47.826 | 0.00 | 0.00 | 41.88 | 3.55 |
3175 | 3548 | 4.619760 | GCAAGCTCGGTTGGTTTTATTTAC | 59.380 | 41.667 | 10.43 | 0.00 | 0.00 | 2.01 |
3223 | 3596 | 9.474313 | ACAGGCTCCTTGTCAATAAATTAATTA | 57.526 | 29.630 | 0.01 | 0.00 | 0.00 | 1.40 |
3224 | 3597 | 8.253113 | CACAGGCTCCTTGTCAATAAATTAATT | 58.747 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3225 | 3598 | 7.615365 | TCACAGGCTCCTTGTCAATAAATTAAT | 59.385 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3226 | 3599 | 6.945435 | TCACAGGCTCCTTGTCAATAAATTAA | 59.055 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3227 | 3600 | 6.480763 | TCACAGGCTCCTTGTCAATAAATTA | 58.519 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3228 | 3601 | 5.324409 | TCACAGGCTCCTTGTCAATAAATT | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
3229 | 3602 | 4.922206 | TCACAGGCTCCTTGTCAATAAAT | 58.078 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
3230 | 3603 | 4.365514 | TCACAGGCTCCTTGTCAATAAA | 57.634 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
3236 | 3609 | 2.479566 | TCATTCACAGGCTCCTTGTC | 57.520 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3241 | 3617 | 3.841643 | CAAACATTCATTCACAGGCTCC | 58.158 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
3242 | 3618 | 3.248266 | GCAAACATTCATTCACAGGCTC | 58.752 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
3246 | 3622 | 4.804665 | TGTTGTGCAAACATTCATTCACAG | 59.195 | 37.500 | 9.46 | 0.00 | 36.09 | 3.66 |
3272 | 3648 | 8.680903 | AGAAATATGACTATTGCTTTCCAGTTG | 58.319 | 33.333 | 0.00 | 0.00 | 30.11 | 3.16 |
3316 | 3786 | 7.927048 | ACGGCCAGTAATAGATTTCAATTAAC | 58.073 | 34.615 | 2.24 | 0.00 | 0.00 | 2.01 |
3336 | 3807 | 6.549061 | ACTAAATCGAATAAAAAGAACGGCC | 58.451 | 36.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3427 | 3899 | 2.544685 | CCTCGCTGTCTGGACAAATAG | 58.455 | 52.381 | 4.94 | 2.86 | 41.33 | 1.73 |
3441 | 3926 | 2.291043 | AACGGAATGACCCCTCGCT | 61.291 | 57.895 | 0.00 | 0.00 | 34.64 | 4.93 |
3452 | 3937 | 0.534203 | ACTCGGCACAACAACGGAAT | 60.534 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3453 | 3938 | 0.745128 | AACTCGGCACAACAACGGAA | 60.745 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3454 | 3939 | 1.153329 | AACTCGGCACAACAACGGA | 60.153 | 52.632 | 0.00 | 0.00 | 0.00 | 4.69 |
3455 | 3940 | 1.010125 | CAACTCGGCACAACAACGG | 60.010 | 57.895 | 0.00 | 0.00 | 0.00 | 4.44 |
3456 | 3941 | 0.375454 | TTCAACTCGGCACAACAACG | 59.625 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
3467 | 3952 | 8.368126 | GCACATGAGATTAAAAATTTCAACTCG | 58.632 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
3477 | 3962 | 3.749088 | ACCGACGCACATGAGATTAAAAA | 59.251 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
3478 | 3963 | 3.124466 | CACCGACGCACATGAGATTAAAA | 59.876 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
3514 | 3999 | 1.340405 | CCAGCTTCAGCCTACCACAAT | 60.340 | 52.381 | 0.00 | 0.00 | 43.38 | 2.71 |
3515 | 4000 | 0.036732 | CCAGCTTCAGCCTACCACAA | 59.963 | 55.000 | 0.00 | 0.00 | 43.38 | 3.33 |
3516 | 4001 | 0.835971 | TCCAGCTTCAGCCTACCACA | 60.836 | 55.000 | 0.00 | 0.00 | 43.38 | 4.17 |
3517 | 4002 | 0.107945 | CTCCAGCTTCAGCCTACCAC | 60.108 | 60.000 | 0.00 | 0.00 | 43.38 | 4.16 |
3518 | 4003 | 0.545309 | ACTCCAGCTTCAGCCTACCA | 60.545 | 55.000 | 0.00 | 0.00 | 43.38 | 3.25 |
3519 | 4004 | 0.107945 | CACTCCAGCTTCAGCCTACC | 60.108 | 60.000 | 0.00 | 0.00 | 43.38 | 3.18 |
3520 | 4005 | 0.610687 | ACACTCCAGCTTCAGCCTAC | 59.389 | 55.000 | 0.00 | 0.00 | 43.38 | 3.18 |
3531 | 4016 | 1.218316 | GGCGGTCCTAACACTCCAG | 59.782 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
3589 | 4074 | 1.188863 | TTCCCCCGTTAGCTCAGTAC | 58.811 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
3656 | 4142 | 4.573900 | ACAAGTTTGGCATAGTGAGAGAG | 58.426 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
3657 | 4143 | 4.623932 | ACAAGTTTGGCATAGTGAGAGA | 57.376 | 40.909 | 0.00 | 0.00 | 0.00 | 3.10 |
3658 | 4144 | 4.614535 | GCAACAAGTTTGGCATAGTGAGAG | 60.615 | 45.833 | 0.00 | 0.00 | 0.00 | 3.20 |
3686 | 4172 | 6.442952 | GCATGTAAACAAACCAATCAGTACA | 58.557 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3690 | 4176 | 3.364621 | GCGCATGTAAACAAACCAATCAG | 59.635 | 43.478 | 0.30 | 0.00 | 0.00 | 2.90 |
3697 | 4183 | 1.268352 | TGAGGGCGCATGTAAACAAAC | 59.732 | 47.619 | 10.83 | 0.00 | 0.00 | 2.93 |
3717 | 4207 | 2.594592 | GGTCAGGCCACAAAGCGT | 60.595 | 61.111 | 5.01 | 0.00 | 37.17 | 5.07 |
3718 | 4208 | 3.726517 | CGGTCAGGCCACAAAGCG | 61.727 | 66.667 | 5.01 | 4.59 | 36.97 | 4.68 |
3734 | 4224 | 0.597637 | AGAGTGGTTGCGACTTCACG | 60.598 | 55.000 | 3.59 | 0.00 | 35.50 | 4.35 |
3805 | 4295 | 2.125512 | CTTCTTCGGCACCGGGAG | 60.126 | 66.667 | 6.32 | 8.02 | 40.25 | 4.30 |
3806 | 4296 | 3.702048 | CCTTCTTCGGCACCGGGA | 61.702 | 66.667 | 6.32 | 5.47 | 40.25 | 5.14 |
3807 | 4297 | 4.778143 | CCCTTCTTCGGCACCGGG | 62.778 | 72.222 | 6.32 | 1.70 | 40.25 | 5.73 |
3808 | 4298 | 3.248446 | TTCCCTTCTTCGGCACCGG | 62.248 | 63.158 | 9.58 | 0.00 | 40.25 | 5.28 |
3809 | 4299 | 1.741770 | CTTCCCTTCTTCGGCACCG | 60.742 | 63.158 | 1.73 | 1.73 | 41.35 | 4.94 |
3810 | 4300 | 0.955919 | CACTTCCCTTCTTCGGCACC | 60.956 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3826 | 4317 | 1.594331 | GGTGCGAAGTTTCTTCCACT | 58.406 | 50.000 | 19.57 | 0.00 | 0.00 | 4.00 |
3828 | 4319 | 0.882927 | CCGGTGCGAAGTTTCTTCCA | 60.883 | 55.000 | 0.00 | 1.66 | 0.00 | 3.53 |
3833 | 4324 | 1.503818 | TTGCTCCGGTGCGAAGTTTC | 61.504 | 55.000 | 22.46 | 0.00 | 35.36 | 2.78 |
3836 | 4327 | 2.110213 | TTTGCTCCGGTGCGAAGT | 59.890 | 55.556 | 23.99 | 0.00 | 32.99 | 3.01 |
3867 | 4358 | 1.818674 | GGTCAATTGGATTTCCTGCGT | 59.181 | 47.619 | 5.42 | 0.00 | 36.82 | 5.24 |
3872 | 4363 | 7.148656 | CGTGTATTTTTGGTCAATTGGATTTCC | 60.149 | 37.037 | 5.42 | 2.19 | 0.00 | 3.13 |
3877 | 4368 | 5.776173 | ACGTGTATTTTTGGTCAATTGGA | 57.224 | 34.783 | 5.42 | 0.00 | 0.00 | 3.53 |
3881 | 4372 | 5.980715 | GGTCAAACGTGTATTTTTGGTCAAT | 59.019 | 36.000 | 0.00 | 0.00 | 34.14 | 2.57 |
3889 | 4380 | 9.405587 | CAATATTCTTGGTCAAACGTGTATTTT | 57.594 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3890 | 4381 | 8.788806 | TCAATATTCTTGGTCAAACGTGTATTT | 58.211 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3891 | 4382 | 8.330466 | TCAATATTCTTGGTCAAACGTGTATT | 57.670 | 30.769 | 0.00 | 0.00 | 0.00 | 1.89 |
3892 | 4383 | 7.915293 | TCAATATTCTTGGTCAAACGTGTAT | 57.085 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3893 | 4384 | 7.731882 | TTCAATATTCTTGGTCAAACGTGTA | 57.268 | 32.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3894 | 4385 | 6.627395 | TTCAATATTCTTGGTCAAACGTGT | 57.373 | 33.333 | 0.00 | 0.00 | 0.00 | 4.49 |
3895 | 4386 | 7.922505 | TTTTCAATATTCTTGGTCAAACGTG | 57.077 | 32.000 | 0.00 | 0.00 | 0.00 | 4.49 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.