Multiple sequence alignment - TraesCS1A01G339900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G339900 chr1A 100.000 8685 0 0 1 8685 530218655 530209971 0.000000e+00 16039.0
1 TraesCS1A01G339900 chr1A 97.143 700 15 2 1 700 530228861 530228167 0.000000e+00 1177.0
2 TraesCS1A01G339900 chr1A 79.014 629 113 13 1786 2409 46236754 46237368 6.270000e-111 412.0
3 TraesCS1A01G339900 chr1A 100.000 30 0 0 8244 8273 530210343 530210314 1.000000e-03 56.5
4 TraesCS1A01G339900 chr1A 100.000 30 0 0 8313 8342 530210412 530210383 1.000000e-03 56.5
5 TraesCS1A01G339900 chr1D 95.059 5303 177 42 705 5976 431814827 431809579 0.000000e+00 8263.0
6 TraesCS1A01G339900 chr1D 95.640 2179 67 14 6048 8210 431809580 431807414 0.000000e+00 3472.0
7 TraesCS1A01G339900 chr1D 88.579 359 24 10 8203 8559 431806471 431806128 3.750000e-113 420.0
8 TraesCS1A01G339900 chr1D 93.827 81 4 1 5974 6053 296361406 296361326 4.260000e-23 121.0
9 TraesCS1A01G339900 chr1D 93.671 79 5 0 5978 6056 28960996 28960918 1.530000e-22 119.0
10 TraesCS1A01G339900 chr1D 100.000 31 0 0 8311 8341 431806432 431806402 3.390000e-04 58.4
11 TraesCS1A01G339900 chr1B 93.470 5237 220 44 769 5976 583092261 583087118 0.000000e+00 7664.0
12 TraesCS1A01G339900 chr1B 97.122 1251 29 5 6048 7293 583087119 583085871 0.000000e+00 2104.0
13 TraesCS1A01G339900 chr1B 95.283 848 30 7 7290 8135 583085758 583084919 0.000000e+00 1336.0
14 TraesCS1A01G339900 chr1B 90.000 250 12 8 8311 8559 583084766 583084529 2.350000e-80 311.0
15 TraesCS1A01G339900 chr1B 93.798 129 7 1 8146 8273 583084863 583084735 8.900000e-45 193.0
16 TraesCS1A01G339900 chr1B 95.000 80 4 0 5974 6053 397816053 397815974 9.150000e-25 126.0
17 TraesCS1A01G339900 chr6A 97.290 701 17 2 1 700 579856452 579857151 0.000000e+00 1188.0
18 TraesCS1A01G339900 chr6A 97.678 689 13 3 1 687 17813238 17812551 0.000000e+00 1181.0
19 TraesCS1A01G339900 chr6A 97.674 688 14 2 1 686 86355001 86355688 0.000000e+00 1181.0
20 TraesCS1A01G339900 chr6A 78.914 626 113 12 1789 2409 608301346 608300735 2.920000e-109 407.0
21 TraesCS1A01G339900 chr6A 84.615 338 42 5 2746 3080 607844326 607844656 2.340000e-85 327.0
22 TraesCS1A01G339900 chr3A 97.962 687 11 2 1 686 392790077 392789393 0.000000e+00 1188.0
23 TraesCS1A01G339900 chr3A 96.862 701 20 2 1 700 625629689 625628990 0.000000e+00 1171.0
24 TraesCS1A01G339900 chr3A 83.036 336 47 5 2747 3080 647003812 647004139 6.590000e-76 296.0
25 TraesCS1A01G339900 chr3A 82.738 336 49 5 2747 3080 647007166 647007494 3.070000e-74 291.0
26 TraesCS1A01G339900 chr3A 81.845 336 52 5 2747 3080 646995310 646995638 3.090000e-69 274.0
27 TraesCS1A01G339900 chr4A 97.817 687 14 1 1 686 494628358 494629044 0.000000e+00 1184.0
28 TraesCS1A01G339900 chr4A 96.862 701 19 3 1 700 587213196 587212498 0.000000e+00 1170.0
29 TraesCS1A01G339900 chr2A 97.817 687 14 1 1 686 703745935 703745249 0.000000e+00 1184.0
30 TraesCS1A01G339900 chr2A 87.059 85 11 0 2557 2641 266328930 266329014 7.180000e-16 97.1
31 TraesCS1A01G339900 chr7B 85.119 336 41 3 2747 3080 507830211 507830539 1.400000e-87 335.0
32 TraesCS1A01G339900 chr7B 86.577 149 18 2 2557 2703 686069986 686070134 6.980000e-36 163.0
33 TraesCS1A01G339900 chr6B 85.119 336 41 3 2747 3080 151912610 151912938 1.400000e-87 335.0
34 TraesCS1A01G339900 chr6B 87.879 165 19 1 2568 2731 332985072 332984908 8.900000e-45 193.0
35 TraesCS1A01G339900 chr4B 85.119 336 41 3 2747 3080 139553090 139552762 1.400000e-87 335.0
36 TraesCS1A01G339900 chr3B 88.485 165 18 1 2568 2731 552953310 552953146 1.910000e-46 198.0
37 TraesCS1A01G339900 chr2B 86.441 177 22 2 2557 2731 624431029 624430853 8.900000e-45 193.0
38 TraesCS1A01G339900 chr2B 92.135 89 5 2 5969 6056 532093908 532093821 3.290000e-24 124.0
39 TraesCS1A01G339900 chr2D 94.048 84 3 2 5974 6056 451974404 451974322 9.150000e-25 126.0
40 TraesCS1A01G339900 chr7D 95.000 80 3 1 5974 6052 135026247 135026326 3.290000e-24 124.0
41 TraesCS1A01G339900 chr7A 92.771 83 4 2 5975 6056 350571866 350571785 1.530000e-22 119.0
42 TraesCS1A01G339900 chr7A 93.750 80 4 1 5971 6050 350571789 350571867 1.530000e-22 119.0
43 TraesCS1A01G339900 chr5B 89.011 91 9 1 5974 6063 704866435 704866525 2.560000e-20 111.0
44 TraesCS1A01G339900 chr4D 87.059 85 10 1 2557 2641 213214248 213214331 2.580000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G339900 chr1A 530209971 530218655 8684 True 16039.00 16039 100.0000 1 8685 1 chr1A.!!$R1 8684
1 TraesCS1A01G339900 chr1A 530228167 530228861 694 True 1177.00 1177 97.1430 1 700 1 chr1A.!!$R2 699
2 TraesCS1A01G339900 chr1A 46236754 46237368 614 False 412.00 412 79.0140 1786 2409 1 chr1A.!!$F1 623
3 TraesCS1A01G339900 chr1D 431806128 431814827 8699 True 3053.35 8263 94.8195 705 8559 4 chr1D.!!$R3 7854
4 TraesCS1A01G339900 chr1B 583084529 583092261 7732 True 2321.60 7664 93.9346 769 8559 5 chr1B.!!$R2 7790
5 TraesCS1A01G339900 chr6A 579856452 579857151 699 False 1188.00 1188 97.2900 1 700 1 chr6A.!!$F2 699
6 TraesCS1A01G339900 chr6A 17812551 17813238 687 True 1181.00 1181 97.6780 1 687 1 chr6A.!!$R1 686
7 TraesCS1A01G339900 chr6A 86355001 86355688 687 False 1181.00 1181 97.6740 1 686 1 chr6A.!!$F1 685
8 TraesCS1A01G339900 chr6A 608300735 608301346 611 True 407.00 407 78.9140 1789 2409 1 chr6A.!!$R2 620
9 TraesCS1A01G339900 chr3A 392789393 392790077 684 True 1188.00 1188 97.9620 1 686 1 chr3A.!!$R1 685
10 TraesCS1A01G339900 chr3A 625628990 625629689 699 True 1171.00 1171 96.8620 1 700 1 chr3A.!!$R2 699
11 TraesCS1A01G339900 chr3A 647003812 647007494 3682 False 293.50 296 82.8870 2747 3080 2 chr3A.!!$F2 333
12 TraesCS1A01G339900 chr4A 494628358 494629044 686 False 1184.00 1184 97.8170 1 686 1 chr4A.!!$F1 685
13 TraesCS1A01G339900 chr4A 587212498 587213196 698 True 1170.00 1170 96.8620 1 700 1 chr4A.!!$R1 699
14 TraesCS1A01G339900 chr2A 703745249 703745935 686 True 1184.00 1184 97.8170 1 686 1 chr2A.!!$R1 685


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 957 0.397957 GAAGTCCTCCTCCTCCTCCC 60.398 65.000 0.00 0.00 0.00 4.30 F
1421 1454 0.041135 CTGGCGACGCTAGCTAGTAC 60.041 60.000 20.50 12.03 38.23 2.73 F
1422 1455 0.463295 TGGCGACGCTAGCTAGTACT 60.463 55.000 21.62 0.00 34.52 2.73 F
1423 1456 0.041135 GGCGACGCTAGCTAGTACTG 60.041 60.000 21.62 11.73 34.52 2.74 F
1424 1457 0.657951 GCGACGCTAGCTAGTACTGC 60.658 60.000 21.62 16.27 0.00 4.40 F
1546 1584 0.729116 CCATGCGCTGTCTGTTAAGG 59.271 55.000 9.73 0.00 0.00 2.69 F
3560 6405 0.038599 ACAATGCCAGATGCCTGTCA 59.961 50.000 0.00 0.00 40.16 3.58 F
3696 6543 1.888512 GCTGAAAATGACCAGAAGGCA 59.111 47.619 0.00 0.00 39.06 4.75 F
4787 7643 1.279496 CCCTTCATCAGTCCCAGTGA 58.721 55.000 0.00 0.00 31.21 3.41 F
5169 8025 1.396653 AGCTGGCCATTTCATGCTAC 58.603 50.000 12.86 0.00 0.00 3.58 F
5414 8271 2.071540 CTTCTCAATGAAGCTGCACGA 58.928 47.619 0.00 0.00 44.62 4.35 F
5992 8852 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2528 2578 0.732571 CCCACATGTCACCGTTATGC 59.267 55.000 0.00 0.00 0.00 3.14 R
3284 5791 5.023452 CAGGATAAAGGGCCCTAAAAAGTT 58.977 41.667 28.96 17.52 0.00 2.66 R
3339 5846 8.250332 TGATAATAACAAAACTTCATCAAGCCC 58.750 33.333 0.00 0.00 32.09 5.19 R
3392 6231 9.677567 CAAGAGAATTGAGAACGGAAATTTTAA 57.322 29.630 0.00 0.00 0.00 1.52 R
3445 6284 9.085645 TCGGTATAAAATGGACTATGATACACT 57.914 33.333 0.00 0.00 0.00 3.55 R
3696 6543 5.821470 CAGCTCATGAGAAATCATACCTTGT 59.179 40.000 27.04 0.00 0.00 3.16 R
4764 7620 2.187958 CTGGGACTGATGAAGGGTACA 58.812 52.381 0.00 0.00 0.00 2.90 R
5787 8644 1.722034 AAGGGAGAAGAGTGACAGCA 58.278 50.000 0.00 0.00 0.00 4.41 R
5973 8833 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73 R
5974 8834 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59 R
7417 10397 1.732809 CTGCTGCTGTCTCAACATCTG 59.267 52.381 0.00 0.00 34.13 2.90 R
7794 10774 0.457166 CTCGCCGAACCGTGACAATA 60.457 55.000 0.00 0.00 0.00 1.90 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 2.098831 GCGCCCTAGACGGTTGTTC 61.099 63.158 0.00 0.00 0.00 3.18
160 162 2.038269 GCCCCGAGCAATTTGACGA 61.038 57.895 14.60 0.00 42.97 4.20
423 425 2.033602 TCGTCTCCTCGTGCCTCA 59.966 61.111 0.00 0.00 0.00 3.86
440 442 3.383825 GCCTCAGTTATCTCTTACCCGAA 59.616 47.826 0.00 0.00 0.00 4.30
680 687 2.152016 CTCTAGGCGACATCCACGATA 58.848 52.381 0.00 0.00 0.00 2.92
687 694 3.311322 GGCGACATCCACGATATTTCAAA 59.689 43.478 0.00 0.00 0.00 2.69
688 695 4.201871 GGCGACATCCACGATATTTCAAAA 60.202 41.667 0.00 0.00 0.00 2.44
689 696 4.963953 GCGACATCCACGATATTTCAAAAG 59.036 41.667 0.00 0.00 0.00 2.27
690 697 5.501715 CGACATCCACGATATTTCAAAAGG 58.498 41.667 0.00 0.00 0.00 3.11
691 698 5.064707 CGACATCCACGATATTTCAAAAGGT 59.935 40.000 0.00 0.00 0.00 3.50
692 699 6.194796 ACATCCACGATATTTCAAAAGGTG 57.805 37.500 0.00 0.00 0.00 4.00
693 700 5.943416 ACATCCACGATATTTCAAAAGGTGA 59.057 36.000 0.00 0.00 0.00 4.02
694 701 6.603201 ACATCCACGATATTTCAAAAGGTGAT 59.397 34.615 0.00 0.00 35.70 3.06
695 702 6.435430 TCCACGATATTTCAAAAGGTGATG 57.565 37.500 0.00 0.00 35.70 3.07
696 703 6.176896 TCCACGATATTTCAAAAGGTGATGA 58.823 36.000 0.00 0.00 35.70 2.92
697 704 6.316140 TCCACGATATTTCAAAAGGTGATGAG 59.684 38.462 0.00 0.00 35.70 2.90
698 705 6.316140 CCACGATATTTCAAAAGGTGATGAGA 59.684 38.462 0.00 0.00 35.70 3.27
699 706 7.404985 CACGATATTTCAAAAGGTGATGAGAG 58.595 38.462 0.00 0.00 35.70 3.20
700 707 7.278646 CACGATATTTCAAAAGGTGATGAGAGA 59.721 37.037 0.00 0.00 35.70 3.10
701 708 7.824289 ACGATATTTCAAAAGGTGATGAGAGAA 59.176 33.333 0.00 0.00 35.70 2.87
702 709 8.668353 CGATATTTCAAAAGGTGATGAGAGAAA 58.332 33.333 0.00 0.00 35.70 2.52
815 822 0.947180 TTCACGCCGAAGCAAGGTAC 60.947 55.000 0.00 0.00 39.83 3.34
915 928 2.052690 ACGGCTCGCACCATACTCT 61.053 57.895 0.00 0.00 0.00 3.24
916 929 1.299468 CGGCTCGCACCATACTCTC 60.299 63.158 0.00 0.00 0.00 3.20
917 930 1.068250 GGCTCGCACCATACTCTCC 59.932 63.158 0.00 0.00 0.00 3.71
918 931 1.068250 GCTCGCACCATACTCTCCC 59.932 63.158 0.00 0.00 0.00 4.30
919 932 1.395826 GCTCGCACCATACTCTCCCT 61.396 60.000 0.00 0.00 0.00 4.20
944 957 0.397957 GAAGTCCTCCTCCTCCTCCC 60.398 65.000 0.00 0.00 0.00 4.30
947 960 2.015726 TCCTCCTCCTCCTCCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
951 964 3.039526 CTCCTCCTCCCCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
1208 1239 2.287915 CCCTGCGATATCCTTTTGTTCG 59.712 50.000 0.00 0.00 0.00 3.95
1209 1240 2.936498 CCTGCGATATCCTTTTGTTCGT 59.064 45.455 0.00 0.00 32.65 3.85
1216 1247 5.232414 CGATATCCTTTTGTTCGTCTTCCTC 59.768 44.000 0.00 0.00 0.00 3.71
1373 1405 0.249953 TGGAGCGCTTTGGTTTCGTA 60.250 50.000 13.26 0.00 0.00 3.43
1390 1423 1.268589 CGTATTCGTGGTGATCTCGCT 60.269 52.381 0.00 0.00 0.00 4.93
1396 1429 1.305297 TGGTGATCTCGCTGGGACT 60.305 57.895 0.00 0.00 0.00 3.85
1420 1453 2.318224 CTGGCGACGCTAGCTAGTA 58.682 57.895 20.50 0.43 38.23 1.82
1421 1454 0.041135 CTGGCGACGCTAGCTAGTAC 60.041 60.000 20.50 12.03 38.23 2.73
1422 1455 0.463295 TGGCGACGCTAGCTAGTACT 60.463 55.000 21.62 0.00 34.52 2.73
1423 1456 0.041135 GGCGACGCTAGCTAGTACTG 60.041 60.000 21.62 11.73 34.52 2.74
1424 1457 0.657951 GCGACGCTAGCTAGTACTGC 60.658 60.000 21.62 16.27 0.00 4.40
1500 1538 1.032014 ACCATGCGATTATTGTGGGC 58.968 50.000 0.00 0.00 34.27 5.36
1530 1568 5.220931 GCGAAATTGTGCTTCTCTAATCCAT 60.221 40.000 0.00 0.00 0.00 3.41
1535 1573 1.139654 TGCTTCTCTAATCCATGCGCT 59.860 47.619 9.73 0.00 0.00 5.92
1536 1574 1.530293 GCTTCTCTAATCCATGCGCTG 59.470 52.381 9.73 4.25 0.00 5.18
1541 1579 1.482182 TCTAATCCATGCGCTGTCTGT 59.518 47.619 9.73 0.00 0.00 3.41
1542 1580 2.093500 TCTAATCCATGCGCTGTCTGTT 60.093 45.455 9.73 0.00 0.00 3.16
1543 1581 2.401583 AATCCATGCGCTGTCTGTTA 57.598 45.000 9.73 0.00 0.00 2.41
1546 1584 0.729116 CCATGCGCTGTCTGTTAAGG 59.271 55.000 9.73 0.00 0.00 2.69
1554 1592 4.438744 GCGCTGTCTGTTAAGGCAAATAAT 60.439 41.667 0.00 0.00 37.65 1.28
1566 1604 9.830975 GTTAAGGCAAATAATTTGGATAATGGT 57.169 29.630 0.00 0.00 40.94 3.55
1581 1619 5.071250 GGATAATGGTACCCACAGTATCACA 59.929 44.000 10.07 0.00 44.85 3.58
1583 1621 5.450818 AATGGTACCCACAGTATCACATT 57.549 39.130 10.07 0.00 44.85 2.71
1590 1628 4.287067 ACCCACAGTATCACATTCTGAGTT 59.713 41.667 0.00 0.00 32.70 3.01
1643 1683 3.459227 TGTGGGAGCCTTGATGAATGATA 59.541 43.478 0.00 0.00 0.00 2.15
1766 1806 7.439955 CAGTGTAGGGGTTTAATTTTGGTTTTC 59.560 37.037 0.00 0.00 0.00 2.29
1769 1809 7.565768 TGTAGGGGTTTAATTTTGGTTTTCTCT 59.434 33.333 0.00 0.00 0.00 3.10
1815 1857 8.149973 TGTTATTGTTCTGAAGTGTTTACCTC 57.850 34.615 0.00 0.00 0.00 3.85
1833 1875 5.622770 ACCTCGGTTAAAATCACATTGTC 57.377 39.130 0.00 0.00 0.00 3.18
1848 1890 7.857734 TCACATTGTCTTGTCTCAACTTTAA 57.142 32.000 0.00 0.00 0.00 1.52
1850 1892 7.768582 TCACATTGTCTTGTCTCAACTTTAAGA 59.231 33.333 0.00 0.00 0.00 2.10
1851 1893 8.066595 CACATTGTCTTGTCTCAACTTTAAGAG 58.933 37.037 0.00 0.00 0.00 2.85
2499 2549 6.974932 TTAGATTGAGAATGTCTGCAGTTC 57.025 37.500 14.67 10.45 0.00 3.01
2500 2550 4.903054 AGATTGAGAATGTCTGCAGTTCA 58.097 39.130 14.67 14.44 0.00 3.18
2501 2551 5.498393 AGATTGAGAATGTCTGCAGTTCAT 58.502 37.500 14.67 16.00 0.00 2.57
2528 2578 1.280746 CTGCTTCCACTTGTGTGCG 59.719 57.895 0.00 0.00 42.54 5.34
2769 2819 7.334421 ACTTATATGTTGTTACCAGCAGTTCTG 59.666 37.037 0.00 0.00 42.49 3.02
3009 4761 5.576774 TCATGTTGTCAGCAAGTAAGTATCG 59.423 40.000 0.00 0.00 34.94 2.92
3016 4768 4.219944 TCAGCAAGTAAGTATCGTTCCTGT 59.780 41.667 0.00 0.00 0.00 4.00
3258 5765 6.094048 ACATTTGTGTTGTGCCTATCATCTAC 59.906 38.462 0.00 0.00 0.00 2.59
3259 5766 4.817318 TGTGTTGTGCCTATCATCTACA 57.183 40.909 0.00 0.00 0.00 2.74
3260 5767 4.758688 TGTGTTGTGCCTATCATCTACAG 58.241 43.478 0.00 0.00 0.00 2.74
3261 5768 4.222810 TGTGTTGTGCCTATCATCTACAGT 59.777 41.667 0.00 0.00 0.00 3.55
3262 5769 5.420739 TGTGTTGTGCCTATCATCTACAGTA 59.579 40.000 0.00 0.00 0.00 2.74
3310 5817 6.068438 ACTTTTTAGGGCCCTTTATCCTGTAT 60.068 38.462 34.04 2.60 32.46 2.29
3469 6308 9.998106 ACAGTGTATCATAGTCCATTTTATACC 57.002 33.333 0.00 0.00 0.00 2.73
3560 6405 0.038599 ACAATGCCAGATGCCTGTCA 59.961 50.000 0.00 0.00 40.16 3.58
3696 6543 1.888512 GCTGAAAATGACCAGAAGGCA 59.111 47.619 0.00 0.00 39.06 4.75
3704 6551 1.985159 TGACCAGAAGGCACAAGGTAT 59.015 47.619 0.00 0.00 39.06 2.73
3708 6555 3.010584 ACCAGAAGGCACAAGGTATGATT 59.989 43.478 0.00 0.00 39.06 2.57
3861 6711 3.983044 AGGTGGGTTCTGTTGACTATC 57.017 47.619 0.00 0.00 0.00 2.08
3951 6804 7.364200 AGCTTGCGATTATCACTAGTTACTAG 58.636 38.462 16.96 16.96 39.72 2.57
4047 6900 2.874701 GTTCTGAAGTGTGTGCTGTGAT 59.125 45.455 0.00 0.00 0.00 3.06
4594 7450 1.955778 TGTTGCCTGATGACAAACTGG 59.044 47.619 0.00 0.00 0.00 4.00
4745 7601 7.346751 TGAGGCCTTTGATTATTGGAATTAC 57.653 36.000 6.77 0.00 0.00 1.89
4764 7620 1.903860 ACATTGGTTGCCATGCATCTT 59.096 42.857 0.00 0.00 38.76 2.40
4778 7634 3.877559 TGCATCTTGTACCCTTCATCAG 58.122 45.455 0.00 0.00 0.00 2.90
4782 7638 2.838202 TCTTGTACCCTTCATCAGTCCC 59.162 50.000 0.00 0.00 0.00 4.46
4787 7643 1.279496 CCCTTCATCAGTCCCAGTGA 58.721 55.000 0.00 0.00 31.21 3.41
4788 7644 1.842562 CCCTTCATCAGTCCCAGTGAT 59.157 52.381 0.00 0.00 38.74 3.06
4882 7738 8.543774 AGATGACTACACCATATTCTCTTTTGT 58.456 33.333 0.00 0.00 0.00 2.83
5107 7963 7.213216 TCTTTGCAAAGTAATATTGTCTGCA 57.787 32.000 32.46 10.58 37.31 4.41
5125 7981 8.224389 TGTCTGCAGCATTTGTGTTATTATAT 57.776 30.769 9.47 0.00 0.00 0.86
5129 7985 8.854979 TGCAGCATTTGTGTTATTATATCAAC 57.145 30.769 0.00 0.00 0.00 3.18
5169 8025 1.396653 AGCTGGCCATTTCATGCTAC 58.603 50.000 12.86 0.00 0.00 3.58
5172 8028 2.646930 CTGGCCATTTCATGCTACTGA 58.353 47.619 5.51 0.00 0.00 3.41
5306 8163 8.921205 GGACATTTTAGTATGACTAACTAGGGA 58.079 37.037 0.00 0.00 40.12 4.20
5328 8185 5.188751 GGATTTGTGGGATGTGGGAAATTTA 59.811 40.000 0.00 0.00 0.00 1.40
5338 8195 8.960591 GGGATGTGGGAAATTTATCAGTATATG 58.039 37.037 0.00 0.00 0.00 1.78
5414 8271 2.071540 CTTCTCAATGAAGCTGCACGA 58.928 47.619 0.00 0.00 44.62 4.35
5721 8578 4.295905 TCTTGGGGTATTCCTGGAGTAT 57.704 45.455 2.01 0.00 35.33 2.12
5866 8725 6.963049 TCATTAGCGAGTTTAGAAGGAAAC 57.037 37.500 0.00 0.00 39.22 2.78
5904 8764 9.851686 TCAGGCAATATAAGACTTGATATTTGT 57.148 29.630 0.00 0.00 0.00 2.83
5974 8834 7.667043 TCTTTTAATGATGAGCTTAACACGT 57.333 32.000 0.00 0.00 0.00 4.49
5975 8835 8.766000 TCTTTTAATGATGAGCTTAACACGTA 57.234 30.769 0.00 0.00 0.00 3.57
5976 8836 8.653338 TCTTTTAATGATGAGCTTAACACGTAC 58.347 33.333 0.00 0.00 0.00 3.67
5977 8837 8.542497 TTTTAATGATGAGCTTAACACGTACT 57.458 30.769 0.00 0.00 0.00 2.73
5978 8838 7.751047 TTAATGATGAGCTTAACACGTACTC 57.249 36.000 0.00 0.00 0.00 2.59
5979 8839 4.106029 TGATGAGCTTAACACGTACTCC 57.894 45.455 0.00 0.00 0.00 3.85
5980 8840 3.119245 TGATGAGCTTAACACGTACTCCC 60.119 47.826 0.00 0.00 0.00 4.30
5981 8841 2.522185 TGAGCTTAACACGTACTCCCT 58.478 47.619 0.00 0.00 0.00 4.20
5982 8842 2.490903 TGAGCTTAACACGTACTCCCTC 59.509 50.000 0.00 0.00 0.00 4.30
5983 8843 1.823610 AGCTTAACACGTACTCCCTCC 59.176 52.381 0.00 0.00 0.00 4.30
5984 8844 1.468736 GCTTAACACGTACTCCCTCCG 60.469 57.143 0.00 0.00 0.00 4.63
5985 8845 1.815003 CTTAACACGTACTCCCTCCGT 59.185 52.381 0.00 0.00 34.71 4.69
5986 8846 1.453155 TAACACGTACTCCCTCCGTC 58.547 55.000 0.00 0.00 31.46 4.79
5987 8847 1.246737 AACACGTACTCCCTCCGTCC 61.247 60.000 0.00 0.00 31.46 4.79
5988 8848 2.044551 ACGTACTCCCTCCGTCCC 60.045 66.667 0.00 0.00 0.00 4.46
5989 8849 2.044650 CGTACTCCCTCCGTCCCA 60.045 66.667 0.00 0.00 0.00 4.37
5990 8850 1.679977 CGTACTCCCTCCGTCCCAA 60.680 63.158 0.00 0.00 0.00 4.12
5991 8851 1.252904 CGTACTCCCTCCGTCCCAAA 61.253 60.000 0.00 0.00 0.00 3.28
5992 8852 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5993 8853 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
5994 8854 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5995 8855 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5996 8856 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5997 8857 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5998 8858 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5999 8859 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
6000 8860 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
6001 8861 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
6002 8862 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
6003 8863 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
6004 8864 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
6005 8865 4.700213 CCGTCCCAAAATAAGTGTCTCAAT 59.300 41.667 0.00 0.00 0.00 2.57
6006 8866 5.878116 CCGTCCCAAAATAAGTGTCTCAATA 59.122 40.000 0.00 0.00 0.00 1.90
6007 8867 6.542370 CCGTCCCAAAATAAGTGTCTCAATAT 59.458 38.462 0.00 0.00 0.00 1.28
6008 8868 7.067008 CCGTCCCAAAATAAGTGTCTCAATATT 59.933 37.037 0.00 0.00 0.00 1.28
6009 8869 9.104965 CGTCCCAAAATAAGTGTCTCAATATTA 57.895 33.333 0.00 0.00 0.00 0.98
6035 8895 9.391006 AGTACAAAGTTGAGACACTTATTTTGA 57.609 29.630 0.00 0.00 35.87 2.69
6036 8896 9.651718 GTACAAAGTTGAGACACTTATTTTGAG 57.348 33.333 0.00 0.00 35.87 3.02
6037 8897 8.506168 ACAAAGTTGAGACACTTATTTTGAGA 57.494 30.769 0.00 0.00 35.87 3.27
6038 8898 8.398665 ACAAAGTTGAGACACTTATTTTGAGAC 58.601 33.333 0.00 0.00 35.87 3.36
6039 8899 6.771188 AGTTGAGACACTTATTTTGAGACG 57.229 37.500 0.00 0.00 0.00 4.18
6040 8900 5.696724 AGTTGAGACACTTATTTTGAGACGG 59.303 40.000 0.00 0.00 0.00 4.79
6041 8901 5.462530 TGAGACACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 0.00 4.69
6042 8902 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
6043 8903 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
6044 8904 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
6045 8905 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
6046 8906 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
6063 8923 9.503399 ACGGAGGGAGTATATGATTTTAAAATC 57.497 33.333 27.02 27.02 43.91 2.17
6285 9146 2.814097 GCAAGGTTCTGCTGGAAGGTAA 60.814 50.000 0.00 0.00 39.34 2.85
6294 9155 4.707448 TCTGCTGGAAGGTAAAGTCTCTAG 59.293 45.833 0.00 0.00 0.00 2.43
6306 9167 7.397476 AGGTAAAGTCTCTAGAACACATCATCA 59.603 37.037 0.00 0.00 0.00 3.07
6485 9346 1.740025 GGGCCGCATATCTCTAATTGC 59.260 52.381 0.00 0.00 0.00 3.56
6495 9356 6.238484 GCATATCTCTAATTGCGGTTTTCACT 60.238 38.462 0.00 0.00 0.00 3.41
6788 9649 7.687941 AATTCTTGACGACATTGAAAGGTAT 57.312 32.000 7.57 0.00 0.00 2.73
6813 9674 4.469657 AGAACCTCAATGCCACAAAAGTA 58.530 39.130 0.00 0.00 0.00 2.24
6838 9699 5.754406 TGCTGTCATTTGTCCTTTCATTTTG 59.246 36.000 0.00 0.00 0.00 2.44
7026 9890 3.378339 CAGTCTTTTCTTGGCTGCAAAG 58.622 45.455 10.60 10.60 0.00 2.77
7030 9894 3.638160 TCTTTTCTTGGCTGCAAAGACAT 59.362 39.130 18.78 0.00 33.46 3.06
7083 9947 1.135721 CTTGCCTATCTTTTGCAGGGC 59.864 52.381 0.00 0.00 39.93 5.19
7218 10083 7.320443 TGCTGCAAAGGTAAGATAATTACTG 57.680 36.000 0.00 0.00 0.00 2.74
7266 10131 2.989422 ATGCAAGAAACTGTAACCGC 57.011 45.000 0.00 0.00 0.00 5.68
7338 10318 8.321353 TCTGTAATACATATTCTATGGCCTTGG 58.679 37.037 3.32 0.00 0.00 3.61
7339 10319 7.984475 TGTAATACATATTCTATGGCCTTGGT 58.016 34.615 3.32 0.00 0.00 3.67
7377 10357 5.606749 ACTCTGTATCAACCTTATATGGCCA 59.393 40.000 8.56 8.56 0.00 5.36
7417 10397 5.675778 CATTTGAATGTGTTCGATGAAGC 57.324 39.130 0.00 0.00 37.15 3.86
7606 10586 4.659172 CCACAAGGGGGAAGCGCA 62.659 66.667 11.47 0.00 0.00 6.09
7697 10677 4.099419 TCCGCTACTGATCACACATACATT 59.901 41.667 0.00 0.00 0.00 2.71
7794 10774 0.404040 TTGATCCCGAGTGGCCTTTT 59.596 50.000 3.32 0.00 0.00 2.27
7820 10800 2.372690 CGGTTCGGCGAGAGTTGTG 61.373 63.158 10.46 0.00 0.00 3.33
7892 10872 3.634910 GGGCTTGTTTTGTTTGAGACCTA 59.365 43.478 0.00 0.00 32.59 3.08
7902 10882 4.208686 GAGACCTAGGCGCCGTGG 62.209 72.222 30.24 30.24 0.00 4.94
8055 11041 2.739913 TCGGACAGTTAATTTCTTGCCG 59.260 45.455 0.00 0.00 37.70 5.69
8102 11090 2.483877 TGCCTGCTTGTTTATTCTGACG 59.516 45.455 0.00 0.00 0.00 4.35
8136 11124 5.465532 ACATTGCATGTTTGTTGATACCA 57.534 34.783 0.00 0.00 41.63 3.25
8154 11187 2.734079 ACCACAAACAAACAAAAGTGCG 59.266 40.909 0.00 0.00 0.00 5.34
8179 11212 4.777366 TGTTCAGGATTCAGACCACATCTA 59.223 41.667 0.00 0.00 35.15 1.98
8272 12256 2.810852 GGATTTGCTTCCGATCTCCATC 59.189 50.000 0.00 0.00 0.00 3.51
8278 12262 2.862921 GCTTCCGATCTCCATCCGTAAC 60.863 54.545 0.00 0.00 0.00 2.50
8280 12264 1.954382 TCCGATCTCCATCCGTAACAG 59.046 52.381 0.00 0.00 0.00 3.16
8281 12265 1.603172 CCGATCTCCATCCGTAACAGC 60.603 57.143 0.00 0.00 0.00 4.40
8319 12303 2.162681 CCACAGGTCCTCAAATTCCAC 58.837 52.381 0.00 0.00 0.00 4.02
8361 12345 0.657840 AGCATGTAATCGGAAAGCGC 59.342 50.000 0.00 0.00 0.00 5.92
8364 12348 0.928229 ATGTAATCGGAAAGCGCGTC 59.072 50.000 8.43 3.24 0.00 5.19
8386 12370 2.851195 AGAGCTTCCACATTTCAACGT 58.149 42.857 0.00 0.00 0.00 3.99
8388 12372 3.632145 AGAGCTTCCACATTTCAACGTTT 59.368 39.130 0.00 0.00 0.00 3.60
8468 12454 5.700832 TCGGTTGATTCTGTATCCAATATGC 59.299 40.000 0.00 0.00 31.87 3.14
8479 12465 4.552166 ATCCAATATGCGTGCAAGTTAC 57.448 40.909 0.00 0.00 0.00 2.50
8480 12466 3.605634 TCCAATATGCGTGCAAGTTACT 58.394 40.909 0.00 0.00 0.00 2.24
8481 12467 3.621268 TCCAATATGCGTGCAAGTTACTC 59.379 43.478 0.00 0.00 0.00 2.59
8482 12468 3.242739 CCAATATGCGTGCAAGTTACTCC 60.243 47.826 0.00 0.00 0.00 3.85
8487 12473 2.224090 TGCGTGCAAGTTACTCCTGTTA 60.224 45.455 0.59 0.00 0.00 2.41
8499 12485 7.793036 AGTTACTCCTGTTATAATTCTGTCCC 58.207 38.462 0.00 0.00 0.00 4.46
8500 12486 5.632034 ACTCCTGTTATAATTCTGTCCCC 57.368 43.478 0.00 0.00 0.00 4.81
8501 12487 5.289510 ACTCCTGTTATAATTCTGTCCCCT 58.710 41.667 0.00 0.00 0.00 4.79
8502 12488 5.131142 ACTCCTGTTATAATTCTGTCCCCTG 59.869 44.000 0.00 0.00 0.00 4.45
8504 12490 5.491078 TCCTGTTATAATTCTGTCCCCTGTT 59.509 40.000 0.00 0.00 0.00 3.16
8505 12491 6.674861 TCCTGTTATAATTCTGTCCCCTGTTA 59.325 38.462 0.00 0.00 0.00 2.41
8506 12492 7.349859 TCCTGTTATAATTCTGTCCCCTGTTAT 59.650 37.037 0.00 0.00 0.00 1.89
8532 12518 4.991776 TGGACCTGTAATTTGTGGATTGA 58.008 39.130 0.00 0.00 0.00 2.57
8594 12580 4.957759 AGTTAAACATGTGTAATCCGGC 57.042 40.909 11.64 0.00 0.00 6.13
8595 12581 4.328536 AGTTAAACATGTGTAATCCGGCA 58.671 39.130 11.64 0.00 0.00 5.69
8596 12582 4.947388 AGTTAAACATGTGTAATCCGGCAT 59.053 37.500 11.64 0.00 0.00 4.40
8597 12583 6.116806 AGTTAAACATGTGTAATCCGGCATA 58.883 36.000 11.64 0.00 0.00 3.14
8598 12584 6.770785 AGTTAAACATGTGTAATCCGGCATAT 59.229 34.615 11.64 0.00 0.00 1.78
8599 12585 7.934665 AGTTAAACATGTGTAATCCGGCATATA 59.065 33.333 11.64 0.00 0.00 0.86
8600 12586 6.801539 AAACATGTGTAATCCGGCATATAG 57.198 37.500 0.00 0.00 0.00 1.31
8601 12587 5.483685 ACATGTGTAATCCGGCATATAGT 57.516 39.130 0.00 0.00 0.00 2.12
8602 12588 5.237815 ACATGTGTAATCCGGCATATAGTG 58.762 41.667 0.00 0.00 0.00 2.74
8603 12589 5.011635 ACATGTGTAATCCGGCATATAGTGA 59.988 40.000 0.00 0.00 0.00 3.41
8604 12590 5.538849 TGTGTAATCCGGCATATAGTGAA 57.461 39.130 0.00 0.00 0.00 3.18
8605 12591 5.294356 TGTGTAATCCGGCATATAGTGAAC 58.706 41.667 0.00 0.00 0.00 3.18
8606 12592 5.163395 TGTGTAATCCGGCATATAGTGAACA 60.163 40.000 0.00 0.00 0.00 3.18
8607 12593 5.176958 GTGTAATCCGGCATATAGTGAACAC 59.823 44.000 0.00 0.00 0.00 3.32
8608 12594 4.415881 AATCCGGCATATAGTGAACACA 57.584 40.909 0.00 0.00 0.00 3.72
8609 12595 4.623932 ATCCGGCATATAGTGAACACAT 57.376 40.909 0.00 2.37 0.00 3.21
8610 12596 3.727726 TCCGGCATATAGTGAACACATG 58.272 45.455 0.00 0.00 0.00 3.21
8611 12597 3.133901 TCCGGCATATAGTGAACACATGT 59.866 43.478 0.00 0.00 0.00 3.21
8612 12598 3.494626 CCGGCATATAGTGAACACATGTC 59.505 47.826 0.00 3.58 0.00 3.06
8613 12599 4.119136 CGGCATATAGTGAACACATGTCA 58.881 43.478 0.00 0.00 0.00 3.58
8614 12600 4.025730 CGGCATATAGTGAACACATGTCAC 60.026 45.833 7.84 7.84 34.84 3.67
8615 12601 4.025730 GGCATATAGTGAACACATGTCACG 60.026 45.833 9.71 0.00 39.18 4.35
8616 12602 4.803613 GCATATAGTGAACACATGTCACGA 59.196 41.667 9.71 6.09 39.18 4.35
8617 12603 5.051441 GCATATAGTGAACACATGTCACGAG 60.051 44.000 9.71 0.00 39.18 4.18
8618 12604 4.783764 ATAGTGAACACATGTCACGAGA 57.216 40.909 9.71 2.15 39.18 4.04
8619 12605 3.018598 AGTGAACACATGTCACGAGAG 57.981 47.619 9.71 0.00 39.18 3.20
8620 12606 2.623416 AGTGAACACATGTCACGAGAGA 59.377 45.455 9.71 0.00 39.18 3.10
8621 12607 3.068165 AGTGAACACATGTCACGAGAGAA 59.932 43.478 9.71 0.00 39.18 2.87
8622 12608 3.802139 GTGAACACATGTCACGAGAGAAA 59.198 43.478 0.00 0.00 0.00 2.52
8623 12609 3.802139 TGAACACATGTCACGAGAGAAAC 59.198 43.478 0.00 0.00 0.00 2.78
8624 12610 3.452755 ACACATGTCACGAGAGAAACA 57.547 42.857 0.00 0.00 34.65 2.83
8625 12611 3.123804 ACACATGTCACGAGAGAAACAC 58.876 45.455 0.00 0.00 33.44 3.32
8626 12612 3.123050 CACATGTCACGAGAGAAACACA 58.877 45.455 0.00 0.00 33.44 3.72
8627 12613 3.555547 CACATGTCACGAGAGAAACACAA 59.444 43.478 0.00 0.00 33.44 3.33
8628 12614 4.033932 CACATGTCACGAGAGAAACACAAA 59.966 41.667 0.00 0.00 33.44 2.83
8629 12615 4.816385 ACATGTCACGAGAGAAACACAAAT 59.184 37.500 0.00 0.00 33.44 2.32
8630 12616 5.296780 ACATGTCACGAGAGAAACACAAATT 59.703 36.000 0.00 0.00 33.44 1.82
8631 12617 5.403897 TGTCACGAGAGAAACACAAATTC 57.596 39.130 0.00 0.00 0.00 2.17
8632 12618 4.026062 TGTCACGAGAGAAACACAAATTCG 60.026 41.667 0.00 0.00 32.04 3.34
8633 12619 4.208460 GTCACGAGAGAAACACAAATTCGA 59.792 41.667 0.00 0.00 32.04 3.71
8634 12620 4.806775 TCACGAGAGAAACACAAATTCGAA 59.193 37.500 0.00 0.00 32.04 3.71
8635 12621 4.898488 CACGAGAGAAACACAAATTCGAAC 59.102 41.667 0.00 0.00 32.04 3.95
8636 12622 4.134546 CGAGAGAAACACAAATTCGAACG 58.865 43.478 0.00 0.00 32.04 3.95
8637 12623 4.317839 CGAGAGAAACACAAATTCGAACGT 60.318 41.667 0.00 0.00 32.04 3.99
8638 12624 5.079397 AGAGAAACACAAATTCGAACGTC 57.921 39.130 0.00 0.00 32.04 4.34
8639 12625 4.025145 AGAGAAACACAAATTCGAACGTCC 60.025 41.667 0.00 0.00 32.04 4.79
8640 12626 3.623960 AGAAACACAAATTCGAACGTCCA 59.376 39.130 0.00 0.00 32.04 4.02
8641 12627 4.274950 AGAAACACAAATTCGAACGTCCAT 59.725 37.500 0.00 0.00 32.04 3.41
8642 12628 3.536158 ACACAAATTCGAACGTCCATG 57.464 42.857 0.00 0.00 0.00 3.66
8643 12629 2.225491 ACACAAATTCGAACGTCCATGG 59.775 45.455 4.97 4.97 0.00 3.66
8644 12630 1.199097 ACAAATTCGAACGTCCATGGC 59.801 47.619 6.96 0.96 0.00 4.40
8645 12631 1.198867 CAAATTCGAACGTCCATGGCA 59.801 47.619 6.96 0.00 0.00 4.92
8646 12632 1.529226 AATTCGAACGTCCATGGCAA 58.471 45.000 6.96 0.00 0.00 4.52
8647 12633 1.086696 ATTCGAACGTCCATGGCAAG 58.913 50.000 6.96 2.96 0.00 4.01
8648 12634 0.953471 TTCGAACGTCCATGGCAAGG 60.953 55.000 6.96 1.41 0.00 3.61
8649 12635 2.398554 CGAACGTCCATGGCAAGGG 61.399 63.158 6.96 5.53 0.00 3.95
8650 12636 1.303317 GAACGTCCATGGCAAGGGT 60.303 57.895 6.96 0.00 0.00 4.34
8651 12637 1.586154 GAACGTCCATGGCAAGGGTG 61.586 60.000 6.96 4.35 0.00 4.61
8652 12638 2.063015 AACGTCCATGGCAAGGGTGA 62.063 55.000 6.96 0.00 0.00 4.02
8653 12639 2.040544 CGTCCATGGCAAGGGTGAC 61.041 63.158 6.96 0.00 0.00 3.67
8664 12650 4.023137 GGGTGACCGTACTAGCCA 57.977 61.111 0.00 0.00 43.64 4.75
8665 12651 2.512973 GGGTGACCGTACTAGCCAT 58.487 57.895 0.00 0.00 43.64 4.40
8666 12652 0.104304 GGGTGACCGTACTAGCCATG 59.896 60.000 0.00 0.00 43.64 3.66
8667 12653 0.104304 GGTGACCGTACTAGCCATGG 59.896 60.000 7.63 7.63 0.00 3.66
8668 12654 0.822164 GTGACCGTACTAGCCATGGT 59.178 55.000 14.67 8.26 38.02 3.55
8669 12655 0.821517 TGACCGTACTAGCCATGGTG 59.178 55.000 14.67 6.79 35.38 4.17
8670 12656 0.104304 GACCGTACTAGCCATGGTGG 59.896 60.000 14.67 6.41 41.55 4.61
8671 12657 1.335132 ACCGTACTAGCCATGGTGGG 61.335 60.000 14.67 6.04 38.19 4.61
8679 12665 4.838152 CCATGGTGGGCGGTCGAG 62.838 72.222 2.57 0.00 32.67 4.04
8680 12666 3.770040 CATGGTGGGCGGTCGAGA 61.770 66.667 0.00 0.00 0.00 4.04
8681 12667 2.764128 ATGGTGGGCGGTCGAGAT 60.764 61.111 0.00 0.00 0.00 2.75
8682 12668 3.094062 ATGGTGGGCGGTCGAGATG 62.094 63.158 0.00 0.00 0.00 2.90
8683 12669 3.771160 GGTGGGCGGTCGAGATGT 61.771 66.667 0.00 0.00 0.00 3.06
8684 12670 2.264794 GTGGGCGGTCGAGATGTT 59.735 61.111 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 1.645034 ATGATTGAGCTCCGAACACG 58.355 50.000 12.15 0.00 0.00 4.49
251 253 2.426431 TCCACTAAGGGACCCTTGAA 57.574 50.000 32.64 15.20 44.44 2.69
423 425 3.991683 AGGGTTCGGGTAAGAGATAACT 58.008 45.455 0.00 0.00 0.00 2.24
440 442 7.504574 ACAAAGTAAAGTGCATAAGTAAAGGGT 59.495 33.333 0.00 0.00 0.00 4.34
715 722 3.764434 GGACATGTGAGTTGAGAGTCCTA 59.236 47.826 1.15 0.00 40.57 2.94
716 723 2.564947 GGACATGTGAGTTGAGAGTCCT 59.435 50.000 1.15 0.00 40.57 3.85
787 794 2.280524 CGGCGTGAAGGTGTTCCA 60.281 61.111 0.00 0.00 35.89 3.53
788 795 1.595929 TTCGGCGTGAAGGTGTTCC 60.596 57.895 6.85 0.00 31.44 3.62
915 928 1.305046 GAGGACTTCGTGGGAGGGA 60.305 63.158 0.00 0.00 0.00 4.20
916 929 2.359967 GGAGGACTTCGTGGGAGGG 61.360 68.421 0.00 0.00 0.00 4.30
917 930 1.305381 AGGAGGACTTCGTGGGAGG 60.305 63.158 0.00 0.00 0.00 4.30
918 931 1.324005 GGAGGAGGACTTCGTGGGAG 61.324 65.000 0.00 0.00 0.00 4.30
919 932 1.305046 GGAGGAGGACTTCGTGGGA 60.305 63.158 0.00 0.00 0.00 4.37
1244 1275 6.408320 CCACCTCAAATTCAGAGAGATCTCAT 60.408 42.308 24.39 9.93 45.21 2.90
1301 1333 1.090052 CCTCCGGGATTTCGAACTGC 61.090 60.000 0.00 0.00 33.58 4.40
1365 1397 3.518590 AGATCACCACGAATACGAAACC 58.481 45.455 0.00 0.00 42.66 3.27
1367 1399 3.431856 CGAGATCACCACGAATACGAAA 58.568 45.455 0.00 0.00 42.66 3.46
1373 1405 0.179100 CCAGCGAGATCACCACGAAT 60.179 55.000 0.00 0.00 0.00 3.34
1420 1453 1.679977 GTGCCATCCCACATGCAGT 60.680 57.895 0.00 0.00 35.80 4.40
1421 1454 2.767445 CGTGCCATCCCACATGCAG 61.767 63.158 0.00 0.00 35.47 4.41
1422 1455 2.555302 ATCGTGCCATCCCACATGCA 62.555 55.000 0.00 0.00 35.47 3.96
1423 1456 1.386525 AATCGTGCCATCCCACATGC 61.387 55.000 0.00 0.00 35.47 4.06
1424 1457 0.382873 CAATCGTGCCATCCCACATG 59.617 55.000 0.00 0.00 35.47 3.21
1508 1546 5.975939 GCATGGATTAGAGAAGCACAATTTC 59.024 40.000 0.00 0.00 0.00 2.17
1530 1568 0.533978 TTGCCTTAACAGACAGCGCA 60.534 50.000 11.47 0.00 0.00 6.09
1535 1573 7.531857 TCCAAATTATTTGCCTTAACAGACA 57.468 32.000 11.82 0.00 39.31 3.41
1543 1581 8.428852 GGTACCATTATCCAAATTATTTGCCTT 58.571 33.333 7.15 2.20 39.31 4.35
1564 1602 4.161565 TCAGAATGTGATACTGTGGGTACC 59.838 45.833 2.17 2.17 45.06 3.34
1566 1604 5.023452 ACTCAGAATGTGATACTGTGGGTA 58.977 41.667 0.00 0.00 37.40 3.69
1567 1605 3.840666 ACTCAGAATGTGATACTGTGGGT 59.159 43.478 0.00 0.00 37.40 4.51
1581 1619 1.274728 AGAGCACGCTGAACTCAGAAT 59.725 47.619 10.95 0.00 46.59 2.40
1583 1621 0.038801 CAGAGCACGCTGAACTCAGA 60.039 55.000 10.95 0.00 46.59 3.27
1590 1628 1.153568 GGCATACAGAGCACGCTGA 60.154 57.895 8.44 0.00 39.20 4.26
1643 1683 6.319658 ACGAATGCCTATTGACAATCTGATTT 59.680 34.615 3.36 0.00 0.00 2.17
1695 1735 8.588290 TGCATGTTTAGGTTAAGTGGAATTAT 57.412 30.769 0.00 0.00 0.00 1.28
1708 1748 8.574251 TGTTTAGTAATGATGCATGTTTAGGT 57.426 30.769 2.46 0.00 0.00 3.08
1787 1827 7.744715 GGTAAACACTTCAGAACAATAACATCG 59.255 37.037 0.00 0.00 0.00 3.84
1815 1857 6.668323 AGACAAGACAATGTGATTTTAACCG 58.332 36.000 0.00 0.00 32.57 4.44
1833 1875 5.637387 GCCTCTCTCTTAAAGTTGAGACAAG 59.363 44.000 0.00 0.00 35.70 3.16
1848 1890 2.544721 TCCACATGAAAGCCTCTCTCT 58.455 47.619 0.00 0.00 0.00 3.10
1850 1892 3.522750 AGATTCCACATGAAAGCCTCTCT 59.477 43.478 0.00 0.00 36.33 3.10
1851 1893 3.883669 AGATTCCACATGAAAGCCTCTC 58.116 45.455 0.00 0.00 36.33 3.20
2322 2372 0.746659 GTTGTTGGGCAAGCAAGACT 59.253 50.000 0.00 0.00 37.83 3.24
2442 2492 7.265647 TGAGATTTTTCGTGGACAACATAAA 57.734 32.000 0.00 0.00 0.00 1.40
2499 2549 7.094634 ACACAAGTGGAAGCAGTATTCTTAATG 60.095 37.037 5.08 0.00 34.19 1.90
2500 2550 6.942576 ACACAAGTGGAAGCAGTATTCTTAAT 59.057 34.615 5.08 0.00 34.19 1.40
2501 2551 6.204688 CACACAAGTGGAAGCAGTATTCTTAA 59.795 38.462 5.08 0.00 42.13 1.85
2528 2578 0.732571 CCCACATGTCACCGTTATGC 59.267 55.000 0.00 0.00 0.00 3.14
3280 5787 6.096423 GGATAAAGGGCCCTAAAAAGTTACAG 59.904 42.308 28.96 0.00 0.00 2.74
3284 5791 5.023452 CAGGATAAAGGGCCCTAAAAAGTT 58.977 41.667 28.96 17.52 0.00 2.66
3339 5846 8.250332 TGATAATAACAAAACTTCATCAAGCCC 58.750 33.333 0.00 0.00 32.09 5.19
3392 6231 9.677567 CAAGAGAATTGAGAACGGAAATTTTAA 57.322 29.630 0.00 0.00 0.00 1.52
3445 6284 9.085645 TCGGTATAAAATGGACTATGATACACT 57.914 33.333 0.00 0.00 0.00 3.55
3696 6543 5.821470 CAGCTCATGAGAAATCATACCTTGT 59.179 40.000 27.04 0.00 0.00 3.16
3704 6551 7.317842 GAAGAATTCAGCTCATGAGAAATCA 57.682 36.000 27.04 5.75 46.62 2.57
3961 6814 9.408648 CCCAAGTTGATAAGAATAAACCTGTAT 57.591 33.333 3.87 0.00 27.54 2.29
4047 6900 6.157297 AGGGGCTAATACACAATTACACACTA 59.843 38.462 0.00 0.00 0.00 2.74
4161 7014 8.870075 AGATATTTAATGTGGAATCTTAGGCC 57.130 34.615 0.00 0.00 0.00 5.19
4458 7312 6.478344 CACCATCTATCTGTAAAGTTGAGAGC 59.522 42.308 0.00 0.00 0.00 4.09
4594 7450 5.447818 GCTACCAATGACATGTTTGCTAGAC 60.448 44.000 13.36 5.00 0.00 2.59
4656 7512 5.864474 AGACTTGCTACATTAGTTTGTCTCG 59.136 40.000 0.00 0.00 30.81 4.04
4745 7601 2.276201 CAAGATGCATGGCAACCAATG 58.724 47.619 2.46 0.00 43.62 2.82
4764 7620 2.187958 CTGGGACTGATGAAGGGTACA 58.812 52.381 0.00 0.00 0.00 2.90
4778 7634 5.858381 ACATACATGATACATCACTGGGAC 58.142 41.667 0.00 0.00 40.03 4.46
4782 7638 7.386025 CCCAGTAACATACATGATACATCACTG 59.614 40.741 0.00 4.56 40.03 3.66
4787 7643 5.011635 TCGCCCAGTAACATACATGATACAT 59.988 40.000 0.00 0.00 38.18 2.29
4788 7644 4.342665 TCGCCCAGTAACATACATGATACA 59.657 41.667 0.00 0.00 38.18 2.29
4789 7645 4.878439 TCGCCCAGTAACATACATGATAC 58.122 43.478 0.00 0.00 36.61 2.24
4790 7646 5.738619 ATCGCCCAGTAACATACATGATA 57.261 39.130 0.00 0.00 0.00 2.15
4791 7647 4.623932 ATCGCCCAGTAACATACATGAT 57.376 40.909 0.00 0.00 0.00 2.45
4792 7648 4.141824 TGAATCGCCCAGTAACATACATGA 60.142 41.667 0.00 0.00 0.00 3.07
4793 7649 4.024893 GTGAATCGCCCAGTAACATACATG 60.025 45.833 0.00 0.00 0.00 3.21
4927 7783 2.941064 CCTGGTCTGCAACAGATGTATG 59.059 50.000 12.74 0.00 42.73 2.39
5138 7994 3.451141 TGGCCAGCTAAAAACACAAAG 57.549 42.857 0.00 0.00 0.00 2.77
5241 8098 5.125417 GGCAGTAAACATTGAAGGAAGCATA 59.875 40.000 0.00 0.00 0.00 3.14
5279 8136 8.701895 CCCTAGTTAGTCATACTAAAATGTCCA 58.298 37.037 1.26 0.00 41.80 4.02
5306 8163 6.443206 TGATAAATTTCCCACATCCCACAAAT 59.557 34.615 0.00 0.00 0.00 2.32
5414 8271 4.130118 CTGCTCCACTGTAGTTCTTTGTT 58.870 43.478 0.00 0.00 0.00 2.83
5787 8644 1.722034 AAGGGAGAAGAGTGACAGCA 58.278 50.000 0.00 0.00 0.00 4.41
5904 8764 8.258007 AGCTATAAGCATGTAGTTTGTTACAGA 58.742 33.333 1.22 0.00 45.56 3.41
5973 8833 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
5974 8834 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5975 8835 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5976 8836 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5977 8837 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5978 8838 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
5979 8839 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5980 8840 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
5981 8841 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
5982 8842 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
5983 8843 5.880054 ATTGAGACACTTATTTTGGGACG 57.120 39.130 0.00 0.00 0.00 4.79
6009 8869 9.391006 TCAAAATAAGTGTCTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
6010 8870 9.651718 CTCAAAATAAGTGTCTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
6011 8871 9.607988 TCTCAAAATAAGTGTCTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
6012 8872 8.398665 GTCTCAAAATAAGTGTCTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
6013 8873 7.584123 CGTCTCAAAATAAGTGTCTCAACTTTG 59.416 37.037 0.00 0.00 40.77 2.77
6014 8874 7.254795 CCGTCTCAAAATAAGTGTCTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
6015 8875 6.202954 CCGTCTCAAAATAAGTGTCTCAACTT 59.797 38.462 0.00 0.00 42.89 2.66
6016 8876 5.696724 CCGTCTCAAAATAAGTGTCTCAACT 59.303 40.000 0.00 0.00 0.00 3.16
6017 8877 5.694910 TCCGTCTCAAAATAAGTGTCTCAAC 59.305 40.000 0.00 0.00 0.00 3.18
6018 8878 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
6019 8879 5.462530 TCCGTCTCAAAATAAGTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
6020 8880 4.865365 CCTCCGTCTCAAAATAAGTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
6021 8881 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
6022 8882 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
6023 8883 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
6024 8884 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
6025 8885 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
6026 8886 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
6027 8887 7.507956 TCATATACTCCCTCCGTCTCAAAATAA 59.492 37.037 0.00 0.00 0.00 1.40
6028 8888 7.008332 TCATATACTCCCTCCGTCTCAAAATA 58.992 38.462 0.00 0.00 0.00 1.40
6029 8889 5.839063 TCATATACTCCCTCCGTCTCAAAAT 59.161 40.000 0.00 0.00 0.00 1.82
6030 8890 5.205821 TCATATACTCCCTCCGTCTCAAAA 58.794 41.667 0.00 0.00 0.00 2.44
6031 8891 4.800023 TCATATACTCCCTCCGTCTCAAA 58.200 43.478 0.00 0.00 0.00 2.69
6032 8892 4.448720 TCATATACTCCCTCCGTCTCAA 57.551 45.455 0.00 0.00 0.00 3.02
6033 8893 4.659529 ATCATATACTCCCTCCGTCTCA 57.340 45.455 0.00 0.00 0.00 3.27
6034 8894 5.986501 AAATCATATACTCCCTCCGTCTC 57.013 43.478 0.00 0.00 0.00 3.36
6035 8895 7.850935 TTAAAATCATATACTCCCTCCGTCT 57.149 36.000 0.00 0.00 0.00 4.18
6036 8896 8.897872 TTTTAAAATCATATACTCCCTCCGTC 57.102 34.615 0.00 0.00 0.00 4.79
6037 8897 9.503399 GATTTTAAAATCATATACTCCCTCCGT 57.497 33.333 28.20 0.00 43.29 4.69
6038 8898 8.947115 GGATTTTAAAATCATATACTCCCTCCG 58.053 37.037 31.78 0.00 45.10 4.63
6039 8899 9.244292 GGGATTTTAAAATCATATACTCCCTCC 57.756 37.037 31.78 19.60 45.10 4.30
6063 8923 7.560796 AATAAGAGATACATGAGGGTAAGGG 57.439 40.000 0.00 0.00 0.00 3.95
6285 9146 7.619050 ACAATGATGATGTGTTCTAGAGACTT 58.381 34.615 0.00 0.00 0.00 3.01
6306 9167 7.002879 AGCTTCCAGCAATATATTCAGACAAT 58.997 34.615 0.00 0.00 45.56 2.71
6347 9208 6.461509 CCAAAGCTGATTTACCACTGAAAAGT 60.462 38.462 0.00 0.00 0.00 2.66
6470 9331 5.909610 GTGAAAACCGCAATTAGAGATATGC 59.090 40.000 0.00 0.00 35.49 3.14
6485 9346 5.573282 CCGCAGATATCTATAGTGAAAACCG 59.427 44.000 4.54 0.00 0.00 4.44
6495 9356 7.888250 ATCATTGTCTCCGCAGATATCTATA 57.112 36.000 4.54 0.00 0.00 1.31
6607 9468 9.261180 GATACACGATTCAAATAGATTCTTCCA 57.739 33.333 0.00 0.00 0.00 3.53
6788 9649 5.362430 ACTTTTGTGGCATTGAGGTTCTAAA 59.638 36.000 0.00 0.00 0.00 1.85
6813 9674 5.733620 AATGAAAGGACAAATGACAGCAT 57.266 34.783 0.00 0.00 35.92 3.79
6838 9699 5.904362 AAGGAGCACCAAATACTTCAATC 57.096 39.130 2.07 0.00 38.94 2.67
7001 9865 2.310538 CAGCCAAGAAAAGACTGGGTT 58.689 47.619 0.00 0.00 33.73 4.11
7002 9866 1.986882 CAGCCAAGAAAAGACTGGGT 58.013 50.000 0.00 0.00 33.73 4.51
7007 9871 3.375642 GTCTTTGCAGCCAAGAAAAGAC 58.624 45.455 15.68 15.68 46.45 3.01
7026 9890 6.610741 AGACAAAGTCAAGTCAAAGATGTC 57.389 37.500 0.00 0.00 37.23 3.06
7030 9894 6.655003 AGTCAAAGACAAAGTCAAGTCAAAGA 59.345 34.615 0.00 0.00 37.23 2.52
7083 9947 7.301068 TGTTCCAATAACAAGCAAGTTTTTG 57.699 32.000 13.56 13.56 38.97 2.44
7086 9950 6.402222 TGTTGTTCCAATAACAAGCAAGTTT 58.598 32.000 3.67 0.00 40.38 2.66
7218 10083 6.821388 ACCATAGACCTCAATGTATGTCTTC 58.179 40.000 7.20 0.00 38.85 2.87
7266 10131 7.310664 ACTGTTCAAGAATATGCAATGTGAAG 58.689 34.615 0.00 0.00 0.00 3.02
7417 10397 1.732809 CTGCTGCTGTCTCAACATCTG 59.267 52.381 0.00 0.00 34.13 2.90
7472 10452 6.557568 ACCATTTAAGTGGAGGGAATACAAA 58.442 36.000 22.68 0.00 42.02 2.83
7794 10774 0.457166 CTCGCCGAACCGTGACAATA 60.457 55.000 0.00 0.00 0.00 1.90
7820 10800 1.324736 CGACGGAAGCATAGCAAAGAC 59.675 52.381 0.00 0.00 0.00 3.01
7902 10882 4.532834 TGGCCAGGTAAATATTTCTCACC 58.467 43.478 0.00 7.21 0.00 4.02
7903 10883 5.507985 GCATGGCCAGGTAAATATTTCTCAC 60.508 44.000 20.22 0.00 0.00 3.51
8055 11041 8.442632 ACCCTTAACAACTTCAAAGTTAGTAC 57.557 34.615 7.76 0.00 46.89 2.73
8136 11124 3.804873 ACAACGCACTTTTGTTTGTTTGT 59.195 34.783 0.00 0.00 33.23 2.83
8154 11187 3.476552 TGTGGTCTGAATCCTGAACAAC 58.523 45.455 0.00 0.00 39.22 3.32
8179 11212 9.189156 TGGAAGCTTGATTTAGTTTTGCTATAT 57.811 29.630 2.10 0.00 0.00 0.86
8201 11235 2.041485 TGTGGCTCAAATCCTCATGGAA 59.959 45.455 0.00 0.00 46.80 3.53
8227 12211 2.488153 GGAATTGGCTATTACGGATGCC 59.512 50.000 0.00 0.00 45.10 4.40
8242 12226 2.879826 GGAAGCAAATCCGTGGAATTG 58.120 47.619 11.54 11.54 37.89 2.32
8272 12256 0.744414 CCAGTGGATGGCTGTTACGG 60.744 60.000 1.68 0.00 43.83 4.02
8295 12279 0.038744 ATTTGAGGACCTGTGGGCTG 59.961 55.000 0.00 0.00 35.63 4.85
8296 12280 0.779997 AATTTGAGGACCTGTGGGCT 59.220 50.000 0.00 0.00 35.63 5.19
8297 12281 1.177401 GAATTTGAGGACCTGTGGGC 58.823 55.000 0.00 0.00 35.63 5.36
8298 12282 1.075374 TGGAATTTGAGGACCTGTGGG 59.925 52.381 0.00 0.00 38.88 4.61
8299 12283 2.162681 GTGGAATTTGAGGACCTGTGG 58.837 52.381 0.00 0.00 0.00 4.17
8300 12284 1.806542 CGTGGAATTTGAGGACCTGTG 59.193 52.381 0.00 0.00 0.00 3.66
8301 12285 1.271379 CCGTGGAATTTGAGGACCTGT 60.271 52.381 0.00 0.00 0.00 4.00
8302 12286 1.003118 TCCGTGGAATTTGAGGACCTG 59.997 52.381 0.00 0.00 0.00 4.00
8303 12287 1.358152 TCCGTGGAATTTGAGGACCT 58.642 50.000 0.00 0.00 0.00 3.85
8361 12345 2.807967 TGAAATGTGGAAGCTCTTGACG 59.192 45.455 0.00 0.00 0.00 4.35
8364 12348 3.003689 ACGTTGAAATGTGGAAGCTCTTG 59.996 43.478 0.00 0.00 0.00 3.02
8468 12454 6.903883 ATTATAACAGGAGTAACTTGCACG 57.096 37.500 0.00 0.00 0.00 5.34
8479 12465 5.131142 ACAGGGGACAGAATTATAACAGGAG 59.869 44.000 0.00 0.00 0.00 3.69
8480 12466 5.036916 ACAGGGGACAGAATTATAACAGGA 58.963 41.667 0.00 0.00 0.00 3.86
8481 12467 5.373812 ACAGGGGACAGAATTATAACAGG 57.626 43.478 0.00 0.00 0.00 4.00
8487 12473 8.732854 TCCAATTATAACAGGGGACAGAATTAT 58.267 33.333 5.45 0.00 0.00 1.28
8499 12485 8.966868 ACAAATTACAGGTCCAATTATAACAGG 58.033 33.333 0.00 0.00 0.00 4.00
8500 12486 9.787532 CACAAATTACAGGTCCAATTATAACAG 57.212 33.333 0.00 0.00 0.00 3.16
8501 12487 8.744652 CCACAAATTACAGGTCCAATTATAACA 58.255 33.333 0.00 0.00 0.00 2.41
8502 12488 8.962679 TCCACAAATTACAGGTCCAATTATAAC 58.037 33.333 0.00 0.00 0.00 1.89
8504 12490 9.707957 AATCCACAAATTACAGGTCCAATTATA 57.292 29.630 0.00 0.00 0.00 0.98
8505 12491 8.477256 CAATCCACAAATTACAGGTCCAATTAT 58.523 33.333 0.00 0.00 0.00 1.28
8506 12492 7.671819 TCAATCCACAAATTACAGGTCCAATTA 59.328 33.333 0.00 0.00 0.00 1.40
8508 12494 6.015918 TCAATCCACAAATTACAGGTCCAAT 58.984 36.000 0.00 0.00 0.00 3.16
8569 12555 6.643360 GCCGGATTACACATGTTTAACTTTTT 59.357 34.615 5.05 0.00 0.00 1.94
8570 12556 6.153756 GCCGGATTACACATGTTTAACTTTT 58.846 36.000 5.05 0.00 0.00 2.27
8571 12557 5.241949 TGCCGGATTACACATGTTTAACTTT 59.758 36.000 5.05 0.00 0.00 2.66
8572 12558 4.762765 TGCCGGATTACACATGTTTAACTT 59.237 37.500 5.05 0.00 0.00 2.66
8573 12559 4.328536 TGCCGGATTACACATGTTTAACT 58.671 39.130 5.05 0.00 0.00 2.24
8574 12560 4.688511 TGCCGGATTACACATGTTTAAC 57.311 40.909 5.05 2.18 0.00 2.01
8575 12561 7.934665 ACTATATGCCGGATTACACATGTTTAA 59.065 33.333 5.05 6.90 0.00 1.52
8576 12562 7.386573 CACTATATGCCGGATTACACATGTTTA 59.613 37.037 5.05 0.00 0.00 2.01
8577 12563 6.204688 CACTATATGCCGGATTACACATGTTT 59.795 38.462 5.05 0.00 0.00 2.83
8578 12564 5.700832 CACTATATGCCGGATTACACATGTT 59.299 40.000 5.05 0.00 0.00 2.71
8579 12565 5.011635 TCACTATATGCCGGATTACACATGT 59.988 40.000 5.05 0.00 0.00 3.21
8580 12566 5.478407 TCACTATATGCCGGATTACACATG 58.522 41.667 5.05 0.00 0.00 3.21
8581 12567 5.738619 TCACTATATGCCGGATTACACAT 57.261 39.130 5.05 0.00 0.00 3.21
8582 12568 5.163395 TGTTCACTATATGCCGGATTACACA 60.163 40.000 5.05 0.00 0.00 3.72
8583 12569 5.176958 GTGTTCACTATATGCCGGATTACAC 59.823 44.000 5.05 0.28 0.00 2.90
8584 12570 5.163395 TGTGTTCACTATATGCCGGATTACA 60.163 40.000 5.05 0.00 0.00 2.41
8585 12571 5.294356 TGTGTTCACTATATGCCGGATTAC 58.706 41.667 5.05 0.00 0.00 1.89
8586 12572 5.538849 TGTGTTCACTATATGCCGGATTA 57.461 39.130 5.05 0.00 0.00 1.75
8587 12573 4.415881 TGTGTTCACTATATGCCGGATT 57.584 40.909 5.05 0.00 0.00 3.01
8588 12574 4.202357 ACATGTGTTCACTATATGCCGGAT 60.202 41.667 5.05 0.00 0.00 4.18
8589 12575 3.133901 ACATGTGTTCACTATATGCCGGA 59.866 43.478 5.05 0.00 0.00 5.14
8590 12576 3.466836 ACATGTGTTCACTATATGCCGG 58.533 45.455 0.00 0.00 0.00 6.13
8591 12577 4.025730 GTGACATGTGTTCACTATATGCCG 60.026 45.833 1.15 0.00 0.00 5.69
8592 12578 4.025730 CGTGACATGTGTTCACTATATGCC 60.026 45.833 1.15 0.00 32.68 4.40
8593 12579 4.803613 TCGTGACATGTGTTCACTATATGC 59.196 41.667 1.15 0.00 32.68 3.14
8594 12580 6.265577 TCTCGTGACATGTGTTCACTATATG 58.734 40.000 1.15 3.06 32.68 1.78
8595 12581 6.318900 TCTCTCGTGACATGTGTTCACTATAT 59.681 38.462 1.15 0.00 32.68 0.86
8596 12582 5.646360 TCTCTCGTGACATGTGTTCACTATA 59.354 40.000 1.15 0.00 32.68 1.31
8597 12583 4.459337 TCTCTCGTGACATGTGTTCACTAT 59.541 41.667 1.15 0.00 32.68 2.12
8598 12584 3.818773 TCTCTCGTGACATGTGTTCACTA 59.181 43.478 1.15 0.00 32.68 2.74
8599 12585 2.623416 TCTCTCGTGACATGTGTTCACT 59.377 45.455 1.15 0.00 32.68 3.41
8600 12586 3.013276 TCTCTCGTGACATGTGTTCAC 57.987 47.619 1.15 4.40 0.00 3.18
8601 12587 3.726291 TTCTCTCGTGACATGTGTTCA 57.274 42.857 1.15 0.00 0.00 3.18
8602 12588 3.802139 TGTTTCTCTCGTGACATGTGTTC 59.198 43.478 1.15 0.00 0.00 3.18
8603 12589 3.555956 GTGTTTCTCTCGTGACATGTGTT 59.444 43.478 1.15 0.00 0.00 3.32
8604 12590 3.123804 GTGTTTCTCTCGTGACATGTGT 58.876 45.455 1.15 0.00 0.00 3.72
8605 12591 3.123050 TGTGTTTCTCTCGTGACATGTG 58.877 45.455 1.15 0.00 0.00 3.21
8606 12592 3.452755 TGTGTTTCTCTCGTGACATGT 57.547 42.857 0.00 0.00 0.00 3.21
8607 12593 4.794248 TTTGTGTTTCTCTCGTGACATG 57.206 40.909 0.00 0.00 0.00 3.21
8608 12594 5.333339 CGAATTTGTGTTTCTCTCGTGACAT 60.333 40.000 0.00 0.00 0.00 3.06
8609 12595 4.026062 CGAATTTGTGTTTCTCTCGTGACA 60.026 41.667 0.00 0.00 0.00 3.58
8610 12596 4.208460 TCGAATTTGTGTTTCTCTCGTGAC 59.792 41.667 0.00 0.00 0.00 3.67
8611 12597 4.364860 TCGAATTTGTGTTTCTCTCGTGA 58.635 39.130 0.00 0.00 0.00 4.35
8612 12598 4.708868 TCGAATTTGTGTTTCTCTCGTG 57.291 40.909 0.00 0.00 0.00 4.35
8613 12599 4.317839 CGTTCGAATTTGTGTTTCTCTCGT 60.318 41.667 0.00 0.00 0.00 4.18
8614 12600 4.134546 CGTTCGAATTTGTGTTTCTCTCG 58.865 43.478 0.00 0.00 0.00 4.04
8615 12601 5.079397 ACGTTCGAATTTGTGTTTCTCTC 57.921 39.130 0.00 0.00 0.00 3.20
8616 12602 4.025145 GGACGTTCGAATTTGTGTTTCTCT 60.025 41.667 0.00 0.00 0.00 3.10
8617 12603 4.209112 GGACGTTCGAATTTGTGTTTCTC 58.791 43.478 0.00 0.00 0.00 2.87
8618 12604 3.623960 TGGACGTTCGAATTTGTGTTTCT 59.376 39.130 0.00 0.00 0.00 2.52
8619 12605 3.942739 TGGACGTTCGAATTTGTGTTTC 58.057 40.909 0.00 0.00 0.00 2.78
8620 12606 4.286910 CATGGACGTTCGAATTTGTGTTT 58.713 39.130 0.00 0.00 0.00 2.83
8621 12607 3.304391 CCATGGACGTTCGAATTTGTGTT 60.304 43.478 5.56 0.00 0.00 3.32
8622 12608 2.225491 CCATGGACGTTCGAATTTGTGT 59.775 45.455 5.56 0.00 0.00 3.72
8623 12609 2.850321 CCATGGACGTTCGAATTTGTG 58.150 47.619 5.56 0.00 0.00 3.33
8624 12610 1.199097 GCCATGGACGTTCGAATTTGT 59.801 47.619 18.40 0.14 0.00 2.83
8625 12611 1.198867 TGCCATGGACGTTCGAATTTG 59.801 47.619 18.40 0.00 0.00 2.32
8626 12612 1.529226 TGCCATGGACGTTCGAATTT 58.471 45.000 18.40 0.00 0.00 1.82
8627 12613 1.468520 CTTGCCATGGACGTTCGAATT 59.531 47.619 18.40 0.00 0.00 2.17
8628 12614 1.086696 CTTGCCATGGACGTTCGAAT 58.913 50.000 18.40 0.00 0.00 3.34
8629 12615 0.953471 CCTTGCCATGGACGTTCGAA 60.953 55.000 18.40 0.00 0.00 3.71
8630 12616 1.375396 CCTTGCCATGGACGTTCGA 60.375 57.895 18.40 0.00 0.00 3.71
8631 12617 2.398554 CCCTTGCCATGGACGTTCG 61.399 63.158 18.40 0.00 0.00 3.95
8632 12618 1.303317 ACCCTTGCCATGGACGTTC 60.303 57.895 18.40 0.00 0.00 3.95
8633 12619 1.603455 CACCCTTGCCATGGACGTT 60.603 57.895 18.40 0.00 0.00 3.99
8634 12620 2.034066 CACCCTTGCCATGGACGT 59.966 61.111 18.40 0.00 0.00 4.34
8635 12621 2.040544 GTCACCCTTGCCATGGACG 61.041 63.158 18.40 1.78 0.00 4.79
8636 12622 1.678970 GGTCACCCTTGCCATGGAC 60.679 63.158 18.40 7.64 0.00 4.02
8637 12623 2.763215 GGTCACCCTTGCCATGGA 59.237 61.111 18.40 0.00 0.00 3.41
8638 12624 2.191786 TACGGTCACCCTTGCCATGG 62.192 60.000 7.63 7.63 0.00 3.66
8639 12625 1.024579 GTACGGTCACCCTTGCCATG 61.025 60.000 0.00 0.00 0.00 3.66
8640 12626 1.198759 AGTACGGTCACCCTTGCCAT 61.199 55.000 0.00 0.00 0.00 4.40
8641 12627 0.542467 TAGTACGGTCACCCTTGCCA 60.542 55.000 0.00 0.00 0.00 4.92
8642 12628 0.175073 CTAGTACGGTCACCCTTGCC 59.825 60.000 0.00 0.00 0.00 4.52
8643 12629 0.459759 GCTAGTACGGTCACCCTTGC 60.460 60.000 0.00 0.00 0.00 4.01
8644 12630 0.175073 GGCTAGTACGGTCACCCTTG 59.825 60.000 0.00 0.00 0.00 3.61
8645 12631 0.251922 TGGCTAGTACGGTCACCCTT 60.252 55.000 0.00 0.00 0.00 3.95
8646 12632 0.032416 ATGGCTAGTACGGTCACCCT 60.032 55.000 0.00 0.00 0.00 4.34
8647 12633 0.104304 CATGGCTAGTACGGTCACCC 59.896 60.000 0.00 0.00 0.00 4.61
8648 12634 0.104304 CCATGGCTAGTACGGTCACC 59.896 60.000 0.00 0.00 0.00 4.02
8649 12635 0.822164 ACCATGGCTAGTACGGTCAC 59.178 55.000 13.04 0.00 0.00 3.67
8650 12636 0.821517 CACCATGGCTAGTACGGTCA 59.178 55.000 13.04 0.00 0.00 4.02
8651 12637 0.104304 CCACCATGGCTAGTACGGTC 59.896 60.000 13.04 0.00 0.00 4.79
8652 12638 1.335132 CCCACCATGGCTAGTACGGT 61.335 60.000 13.04 0.00 35.79 4.83
8653 12639 1.445942 CCCACCATGGCTAGTACGG 59.554 63.158 13.04 0.89 35.79 4.02
8662 12648 4.838152 CTCGACCGCCCACCATGG 62.838 72.222 11.19 11.19 37.25 3.66
8663 12649 3.094062 ATCTCGACCGCCCACCATG 62.094 63.158 0.00 0.00 0.00 3.66
8664 12650 2.764128 ATCTCGACCGCCCACCAT 60.764 61.111 0.00 0.00 0.00 3.55
8665 12651 3.770040 CATCTCGACCGCCCACCA 61.770 66.667 0.00 0.00 0.00 4.17
8666 12652 3.310860 AACATCTCGACCGCCCACC 62.311 63.158 0.00 0.00 0.00 4.61
8667 12653 2.264794 AACATCTCGACCGCCCAC 59.735 61.111 0.00 0.00 0.00 4.61



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.