AutoCloner

Multiple sequence alignment - TraesCS1A01G339000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G339000	chr1A	100.000	2944	0	0	1	2944	528931311	528934254	0.000000e+00	5437.0
1	TraesCS1A01G339000	chr1A	95.797	690	28	1	1	689	76418043	76417354	0.000000e+00	1112.0
2	TraesCS1A01G339000	chr1A	95.797	690	28	1	1	689	498558972	498558283	0.000000e+00	1112.0
3	TraesCS1A01G339000	chr1A	91.202	341	25	2	688	1028	528934649	528934314	2.670000e-125	459.0
4	TraesCS1A01G339000	chr6D	92.507	1428	53	11	1565	2943	86024590	86026012	0.000000e+00	1995.0
5	TraesCS1A01G339000	chr6D	89.811	952	72	16	1979	2923	97186310	97187243	0.000000e+00	1197.0
6	TraesCS1A01G339000	chr6D	94.353	425	19	2	892	1316	86023506	86023925	0.000000e+00	647.0
7	TraesCS1A01G339000	chr6D	90.643	342	18	4	688	1028	86026397	86026069	2.690000e-120	442.0
8	TraesCS1A01G339000	chr6D	90.717	237	19	3	1333	1567	86024137	86024372	2.200000e-81	313.0
9	TraesCS1A01G339000	chr2D	92.351	1425	51	10	1565	2944	190367482	190368893	0.000000e+00	1975.0
10	TraesCS1A01G339000	chr2D	90.185	540	26	11	1019	1531	190366711	190367250	0.000000e+00	678.0
11	TraesCS1A01G339000	chr2D	89.067	375	38	2	2456	2828	625154953	625154580	2.070000e-126	462.0
12	TraesCS1A01G339000	chr2D	93.007	286	20	0	686	971	190366420	190366705	4.540000e-113	418.0
13	TraesCS1A01G339000	chr2D	97.143	70	1	1	902	971	624563605	624563537	1.850000e-22	117.0
14	TraesCS1A01G339000	chr2D	96.078	51	2	0	921	971	190369040	190368990	1.880000e-12	84.2
15	TraesCS1A01G339000	chr2D	100.000	45	0	0	1937	1981	624563461	624563505	1.880000e-12	84.2
16	TraesCS1A01G339000	chr5A	96.093	691	25	1	1	689	363675221	363674531	0.000000e+00	1125.0
17	TraesCS1A01G339000	chr4A	95.942	690	27	1	1	689	112478436	112477747	0.000000e+00	1118.0
18	TraesCS1A01G339000	chr4A	94.144	222	13	0	686	907	374660917	374661138	3.630000e-89	339.0
19	TraesCS1A01G339000	chr4A	93.636	220	13	1	688	907	106913226	106913444	7.870000e-86	327.0
20	TraesCS1A01G339000	chr2A	95.942	690	27	1	1	689	103194221	103193532	0.000000e+00	1118.0
21	TraesCS1A01G339000	chr2A	95.797	690	28	1	1	689	721875425	721874736	0.000000e+00	1112.0
22	TraesCS1A01G339000	chr2A	86.893	206	21	3	2539	2743	622456440	622456640	2.950000e-55	226.0
23	TraesCS1A01G339000	chr3A	96.064	686	23	3	1	683	440719019	440719703	0.000000e+00	1114.0
24	TraesCS1A01G339000	chr3A	95.187	374	18	0	1023	1396	554215309	554215682	2.530000e-165	592.0
25	TraesCS1A01G339000	chr3A	90.443	429	22	9	1565	1978	554216106	554216530	5.550000e-152	547.0
26	TraesCS1A01G339000	chr3A	85.959	292	29	8	1282	1567	554215599	554215884	4.770000e-78	302.0
27	TraesCS1A01G339000	chr3A	94.203	69	3	1	902	970	554216639	554216572	1.440000e-18	104.0
28	TraesCS1A01G339000	chr7A	95.791	689	28	1	1	689	80267363	80266676	0.000000e+00	1110.0
29	TraesCS1A01G339000	chr7A	95.797	690	26	2	1	689	253492403	253491716	0.000000e+00	1110.0
30	TraesCS1A01G339000	chr2B	90.882	669	42	8	2294	2944	158360263	158359596	0.000000e+00	880.0
31	TraesCS1A01G339000	chr3D	85.714	581	38	21	1023	1567	101549188	101548617	3.290000e-159	571.0
32	TraesCS1A01G339000	chr3D	88.194	432	32	5	1565	1981	101548394	101547967	5.670000e-137	497.0
33	TraesCS1A01G339000	chr3D	95.023	221	11	0	687	907	467319895	467320115	6.040000e-92	348.0
34	TraesCS1A01G339000	chr3D	93.243	222	14	1	686	907	467323248	467323028	2.830000e-85	326.0
35	TraesCS1A01G339000	chr3D	85.915	71	10	0	1407	1477	101548835	101548765	3.150000e-10	76.8
36	TraesCS1A01G339000	chr5D	91.315	403	17	3	1594	1981	36535429	36535828	4.320000e-148	534.0
37	TraesCS1A01G339000	chr5D	95.023	221	11	0	687	907	36536170	36535950	6.040000e-92	348.0
38	TraesCS1A01G339000	chr5D	92.478	226	17	0	682	907	36492175	36492400	1.020000e-84	324.0
39	TraesCS1A01G339000	chr5D	87.368	190	23	1	2286	2475	429716445	429716633	1.780000e-52	217.0
40	TraesCS1A01G339000	chr5D	95.714	70	2	1	902	971	36492441	36492509	8.630000e-21	111.0
41	TraesCS1A01G339000	chr5D	93.478	46	2	1	902	947	36535909	36535865	1.890000e-07	67.6
42	TraesCS1A01G339000	chr3B	84.184	588	48	22	1023	1567	152210713	152210128	2.010000e-146	529.0
43	TraesCS1A01G339000	chr3B	87.963	432	33	5	1565	1981	152209897	152209470	2.640000e-135	492.0
44	TraesCS1A01G339000	chr5B	85.128	195	22	2	2287	2475	518962116	518962309	2.990000e-45	193.0
45	TraesCS1A01G339000	chr5B	89.796	49	4	1	2830	2877	546814262	546814310	8.810000e-06	62.1
46	TraesCS1A01G339000	chr4D	82.482	137	18	6	1984	2117	96900776	96900643	6.670000e-22	115.0
47	TraesCS1A01G339000	chr1B	79.365	126	26	0	2692	2817	131795811	131795936	4.040000e-14	89.8
48	TraesCS1A01G339000	chr1B	88.235	51	5	1	2826	2875	136640488	136640538	3.170000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G339000	chr1A	528931311	528934254	2943	False	5437.000000	5437	100.000000	1	2944	1	chr1A.!!$F1	2943
1	TraesCS1A01G339000	chr1A	76417354	76418043	689	True	1112.000000	1112	95.797000	1	689	1	chr1A.!!$R1	688
2	TraesCS1A01G339000	chr1A	498558283	498558972	689	True	1112.000000	1112	95.797000	1	689	1	chr1A.!!$R2	688
3	TraesCS1A01G339000	chr6D	97186310	97187243	933	False	1197.000000	1197	89.811000	1979	2923	1	chr6D.!!$F1	944
4	TraesCS1A01G339000	chr6D	86023506	86026012	2506	False	985.000000	1995	92.525667	892	2943	3	chr6D.!!$F2	2051
5	TraesCS1A01G339000	chr2D	190366420	190368893	2473	False	1023.666667	1975	91.847667	686	2944	3	chr2D.!!$F2	2258
6	TraesCS1A01G339000	chr5A	363674531	363675221	690	True	1125.000000	1125	96.093000	1	689	1	chr5A.!!$R1	688
7	TraesCS1A01G339000	chr4A	112477747	112478436	689	True	1118.000000	1118	95.942000	1	689	1	chr4A.!!$R1	688
8	TraesCS1A01G339000	chr2A	103193532	103194221	689	True	1118.000000	1118	95.942000	1	689	1	chr2A.!!$R1	688
9	TraesCS1A01G339000	chr2A	721874736	721875425	689	True	1112.000000	1112	95.797000	1	689	1	chr2A.!!$R2	688
10	TraesCS1A01G339000	chr3A	440719019	440719703	684	False	1114.000000	1114	96.064000	1	683	1	chr3A.!!$F1	682
11	TraesCS1A01G339000	chr3A	554215309	554216530	1221	False	480.333333	592	90.529667	1023	1978	3	chr3A.!!$F2	955
12	TraesCS1A01G339000	chr7A	80266676	80267363	687	True	1110.000000	1110	95.791000	1	689	1	chr7A.!!$R1	688
13	TraesCS1A01G339000	chr7A	253491716	253492403	687	True	1110.000000	1110	95.797000	1	689	1	chr7A.!!$R2	688
14	TraesCS1A01G339000	chr2B	158359596	158360263	667	True	880.000000	880	90.882000	2294	2944	1	chr2B.!!$R1	650
15	TraesCS1A01G339000	chr3D	101547967	101549188	1221	True	381.600000	571	86.607667	1023	1981	3	chr3D.!!$R2	958
16	TraesCS1A01G339000	chr3B	152209470	152210713	1243	True	510.500000	529	86.073500	1023	1981	2	chr3B.!!$R1	958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
349	352	0.392336	AATCGCAGAGATGCTCCCTC	59.608	55.0	0.0	0.0	43.63	4.30	F
1489	1733	0.320421	GCACAGCGGAGAAGGTTACA	60.320	55.0	0.0	0.0	0.00	2.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1592	2092	0.179094	AAACAAGTGGAGCGTCACGA	60.179	50.0	0.00	0.00	42.10	4.35	R
2414	2964	0.459899	TCGACAATCCCGAGGATGTG	59.540	55.0	6.24	8.87	42.27	3.21	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
340	343	1.735700	CGGCAGTAACAATCGCAGAGA	60.736	52.381	0.00	0.00	43.63	3.10
349	352	0.392336	AATCGCAGAGATGCTCCCTC	59.608	55.000	0.00	0.00	43.63	4.30
356	359	1.573376	AGAGATGCTCCCTCTACCACT	59.427	52.381	0.00	0.00	39.07	4.00
424	427	2.103941	CCCAGCTTGGCCAAAACTTAAA	59.896	45.455	20.91	0.00	35.79	1.52
549	552	2.869801	CAGGTTTAATGAGCGCGGATAA	59.130	45.455	8.83	0.00	0.00	1.75
614	619	5.163353	GGGGAGAAGGAGAGAAATGTAAGAG	60.163	48.000	0.00	0.00	0.00	2.85
653	658	3.094484	AGACAGAGGAAGGAGACGAAT	57.906	47.619	0.00	0.00	0.00	3.34
657	662	4.087182	ACAGAGGAAGGAGACGAATACAA	58.913	43.478	0.00	0.00	0.00	2.41
670	675	1.591619	GAATACAAAGTCCGGCGCTAC	59.408	52.381	7.64	1.22	0.00	3.58
723	728	3.093057	GGAGTCCTAGAACTTGCTCTCA	58.907	50.000	0.41	0.00	0.00	3.27
740	745	4.633126	GCTCTCAATGTGATGCTTTAGTCA	59.367	41.667	0.00	0.00	0.00	3.41
743	748	7.518052	GCTCTCAATGTGATGCTTTAGTCATAC	60.518	40.741	0.00	0.00	0.00	2.39
746	751	8.510243	TCAATGTGATGCTTTAGTCATACAAT	57.490	30.769	0.00	0.00	0.00	2.71
749	754	9.577110	AATGTGATGCTTTAGTCATACAATTTG	57.423	29.630	0.00	0.00	0.00	2.32
764	769	8.527810	TCATACAATTTGAAATTTGACCCTACC	58.472	33.333	2.79	0.00	0.00	3.18
765	770	6.109156	ACAATTTGAAATTTGACCCTACCC	57.891	37.500	2.79	0.00	0.00	3.69
823	828	0.723981	GACAAATCAGAGAGCGCCAC	59.276	55.000	2.29	0.00	0.00	5.01
855	860	4.830765	GCATACCCGGTCAGCGCA	62.831	66.667	11.47	0.00	0.00	6.09
874	879	2.288640	GCATGCTCTTTTGCAAAGAGGT	60.289	45.455	26.10	8.56	46.61	3.85
880	885	2.174639	TCTTTTGCAAAGAGGTCCCTGA	59.825	45.455	12.41	0.00	0.00	3.86
881	886	2.978156	TTTGCAAAGAGGTCCCTGAT	57.022	45.000	8.05	0.00	0.00	2.90
887	892	1.366319	AAGAGGTCCCTGATGTTGCT	58.634	50.000	0.00	0.00	0.00	3.91
927	932	3.283751	ACCAAACCATCAACTCAAACGA	58.716	40.909	0.00	0.00	0.00	3.85
971	976	3.428282	GTCCGGCCGAAACGCAAT	61.428	61.111	30.73	0.00	0.00	3.56
972	977	2.670251	TCCGGCCGAAACGCAATT	60.670	55.556	30.73	0.00	0.00	2.32
973	978	1.375652	TCCGGCCGAAACGCAATTA	60.376	52.632	30.73	0.00	0.00	1.40
1014	1019	2.384382	GCACGCATGCCACAAATATAC	58.616	47.619	13.15	0.00	46.97	1.47
1015	1020	2.033299	GCACGCATGCCACAAATATACT	59.967	45.455	13.15	0.00	46.97	2.12
1016	1021	3.849645	GCACGCATGCCACAAATATACTC	60.850	47.826	13.15	0.00	46.97	2.59
1191	1214	2.153645	CATGCAGCTTGTGGTGAGTAA	58.846	47.619	0.00	0.00	43.76	2.24
1192	1215	1.593196	TGCAGCTTGTGGTGAGTAAC	58.407	50.000	0.00	0.00	43.76	2.50
1223	1246	3.967401	TGTAACAAATGTCGTCTCGTGA	58.033	40.909	0.00	0.00	0.00	4.35
1489	1733	0.320421	GCACAGCGGAGAAGGTTACA	60.320	55.000	0.00	0.00	0.00	2.41
1569	1876	3.437795	CACGACGGGCCTACGAGT	61.438	66.667	21.86	11.09	37.61	4.18
1592	2092	1.227556	GTCACTGACGTGTTGGGCT	60.228	57.895	0.00	0.00	41.89	5.19
1700	2202	1.371558	GGTGAGCCACTTCTTCGGT	59.628	57.895	5.48	0.00	34.40	4.69
1786	2303	4.996434	ACTGCTGCGTGAGGGCAC	62.996	66.667	0.00	0.00	38.17	5.01
1852	2371	3.314331	CCAGCAGGTGAGGGACGT	61.314	66.667	0.00	0.00	0.00	4.34
2085	2607	4.158394	CACTCCATCAGTTTTTATGTGGGG	59.842	45.833	0.00	0.00	30.26	4.96
2087	2609	4.085733	TCCATCAGTTTTTATGTGGGGTG	58.914	43.478	0.00	0.00	0.00	4.61
2094	2617	4.090819	GTTTTTATGTGGGGTGTATGGGT	58.909	43.478	0.00	0.00	0.00	4.51
2134	2657	1.455786	CGAGCGACACGAATCAAACTT	59.544	47.619	0.00	0.00	0.00	2.66
2139	2662	2.411547	CGACACGAATCAAACTTGCCTC	60.412	50.000	0.00	0.00	0.00	4.70
2165	2688	0.395173	ACCAACGCCAAACAGAAGGT	60.395	50.000	0.00	0.00	0.00	3.50
2167	2690	4.977393	ACGCCAAACAGAAGGTGT	57.023	50.000	0.00	0.00	43.41	4.16
2190	2713	1.294138	CTTAGTCCGGCCGACCAAA	59.706	57.895	30.73	17.28	43.08	3.28
2290	2840	1.235724	GAAACAGGTACAAGCCGCTT	58.764	50.000	0.00	0.00	0.00	4.68
2517	3067	3.636313	GACGTCCGGTCGGCATTGA	62.636	63.158	22.37	0.00	38.86	2.57
2768	3318	1.358759	GGATTTATGTTGCCGGCGG	59.641	57.895	24.35	24.35	0.00	6.13
2906	3466	2.978010	CCGTGGCGCCTCTGTTTT	60.978	61.111	29.70	0.00	0.00	2.43

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
111	112	5.607171	CCCCTAACAGAACTATTATCCCTGT	59.393	44.000	0.00	0.00	39.49	4.00
118	119	7.311486	GGAAAGGAACCCCTAACAGAACTATTA	60.311	40.741	0.00	0.00	43.48	0.98
340	343	2.043227	GCTAAGTGGTAGAGGGAGCAT	58.957	52.381	0.00	0.00	30.50	3.79
349	352	2.858344	CGATTGTTCGGCTAAGTGGTAG	59.142	50.000	0.00	0.00	41.74	3.18
375	378	2.326428	GCTCCTATGCTTACCCCTACA	58.674	52.381	0.00	0.00	0.00	2.74
424	427	9.788889	ATTCACCATTATATGCATCGATATGAT	57.211	29.630	0.19	0.00	38.01	2.45
459	462	2.289382	ACATGTGTCACACTTCCGCATA	60.289	45.455	8.08	0.00	35.11	3.14
549	552	0.826715	AGGCTCATACAGTGATGCGT	59.173	50.000	0.00	0.00	35.97	5.24
633	638	2.588464	TTCGTCTCCTTCCTCTGTCT	57.412	50.000	0.00	0.00	0.00	3.41
653	658	1.153978	CGTAGCGCCGGACTTTGTA	60.154	57.895	5.05	0.00	0.00	2.41
670	675	2.516923	ACTCTTCGAAGATTGTACGCG	58.483	47.619	27.19	15.40	35.04	6.01
676	681	6.080406	GGTGCTTTTAACTCTTCGAAGATTG	58.920	40.000	27.19	18.84	35.04	2.67
723	728	9.577110	CAAATTGTATGACTAAAGCATCACATT	57.423	29.630	0.00	0.00	0.00	2.71
740	745	7.456269	TGGGTAGGGTCAAATTTCAAATTGTAT	59.544	33.333	0.00	0.00	0.00	2.29
743	748	6.107901	TGGGTAGGGTCAAATTTCAAATTG	57.892	37.500	0.00	0.00	0.00	2.32
746	751	4.810345	ACTGGGTAGGGTCAAATTTCAAA	58.190	39.130	0.00	0.00	0.00	2.69
749	754	3.353557	GGACTGGGTAGGGTCAAATTTC	58.646	50.000	0.00	0.00	34.49	2.17
756	761	0.252558	TTGAGGGACTGGGTAGGGTC	60.253	60.000	0.00	0.00	41.55	4.46
758	763	0.252742	AGTTGAGGGACTGGGTAGGG	60.253	60.000	0.00	0.00	41.55	3.53
764	769	2.787473	TATGCAAGTTGAGGGACTGG	57.213	50.000	7.16	0.00	41.55	4.00
765	770	3.942829	TCTTATGCAAGTTGAGGGACTG	58.057	45.455	7.16	0.00	33.44	3.51
813	818	2.887568	CATCCACGTGGCGCTCTC	60.888	66.667	30.25	0.00	34.44	3.20
815	820	3.490759	CACATCCACGTGGCGCTC	61.491	66.667	30.25	0.00	33.05	5.03
823	828	0.392327	TATGCACCCACACATCCACG	60.392	55.000	0.00	0.00	0.00	4.94
855	860	2.560105	GGACCTCTTTGCAAAAGAGCAT	59.440	45.455	22.71	16.49	45.19	3.79
874	879	2.040145	TGATTCACAGCAACATCAGGGA	59.960	45.455	0.00	0.00	0.00	4.20
880	885	1.541147	CGGGTTGATTCACAGCAACAT	59.459	47.619	0.00	0.00	44.59	2.71
881	886	0.950836	CGGGTTGATTCACAGCAACA	59.049	50.000	0.00	0.00	44.59	3.33
887	892	0.107643	TCTGTGCGGGTTGATTCACA	59.892	50.000	0.00	0.00	37.78	3.58
970	975	3.451540	TGCATGCATGGTTGATGGTTAAT	59.548	39.130	27.34	0.00	31.99	1.40
971	976	2.830321	TGCATGCATGGTTGATGGTTAA	59.170	40.909	27.34	0.00	31.99	2.01
972	977	2.454538	TGCATGCATGGTTGATGGTTA	58.545	42.857	27.34	0.00	31.99	2.85
973	978	1.268066	TGCATGCATGGTTGATGGTT	58.732	45.000	27.34	0.00	31.99	3.67
1008	1013	7.527796	TGTCCTCTAGCTGGTTAGAGTATATT	58.472	38.462	16.32	0.00	43.30	1.28
1014	1019	3.320541	CCATGTCCTCTAGCTGGTTAGAG	59.679	52.174	12.49	12.49	44.06	2.43
1015	1020	3.300388	CCATGTCCTCTAGCTGGTTAGA	58.700	50.000	0.00	0.00	0.00	2.10
1016	1021	2.366916	CCCATGTCCTCTAGCTGGTTAG	59.633	54.545	0.00	0.00	0.00	2.34
1124	1129	1.531365	CCTTGGCTTGCCTTGTCCA	60.531	57.895	13.18	0.00	0.00	4.02
1191	1214	4.638304	ACATTTGTTACAACCTAGCTCGT	58.362	39.130	0.00	0.00	0.00	4.18
1192	1215	4.201589	CGACATTTGTTACAACCTAGCTCG	60.202	45.833	0.00	0.00	0.00	5.03
1232	1255	0.738975	CGGCCTCTTCACGTCATCTA	59.261	55.000	0.00	0.00	0.00	1.98
1271	1294	4.323477	CGGGGAAGTTGTGCGGGA	62.323	66.667	0.00	0.00	0.00	5.14
1392	1627	1.797933	CGACGAGTCAGGCAACGAG	60.798	63.158	4.02	0.00	46.39	4.18
1481	1725	0.974383	CGGAGTGGACCTGTAACCTT	59.026	55.000	0.00	0.00	0.00	3.50
1482	1726	0.903454	CCGGAGTGGACCTGTAACCT	60.903	60.000	0.00	0.00	42.00	3.50
1483	1727	0.901580	TCCGGAGTGGACCTGTAACC	60.902	60.000	0.00	0.00	43.74	2.85
1533	1836	1.003233	GGAAGGTGTGGGTGAGCTC	60.003	63.158	6.82	6.82	0.00	4.09
1592	2092	0.179094	AAACAAGTGGAGCGTCACGA	60.179	50.000	0.00	0.00	42.10	4.35
1623	2123	2.352032	GGTGCGTCCTCCAGTAGCT	61.352	63.158	0.00	0.00	0.00	3.32
1624	2124	2.184579	GGTGCGTCCTCCAGTAGC	59.815	66.667	0.00	0.00	0.00	3.58
1625	2125	2.722201	GGGGTGCGTCCTCCAGTAG	61.722	68.421	0.00	0.00	36.25	2.57
1769	2286	4.996434	GTGCCCTCACGCAGCAGT	62.996	66.667	0.00	0.00	40.05	4.40
1786	2303	4.711949	AGTTGAGCAGCGCTGGGG	62.712	66.667	36.47	14.42	39.88	4.96
2016	2538	0.623723	GGGATTAAGTGGGGCTGTGA	59.376	55.000	0.00	0.00	0.00	3.58
2085	2607	4.019591	GGGATCCCACTTATACCCATACAC	60.020	50.000	26.95	0.00	37.50	2.90
2087	2609	4.172807	TGGGATCCCACTTATACCCATAC	58.827	47.826	30.62	0.00	41.76	2.39
2134	2657	1.302431	CGTTGGTGATGGTGAGGCA	60.302	57.895	0.00	0.00	0.00	4.75
2139	2662	0.318614	GTTTGGCGTTGGTGATGGTG	60.319	55.000	0.00	0.00	0.00	4.17
2165	2688	1.231958	CGGCCGGACTAAGCAAAACA	61.232	55.000	20.10	0.00	0.00	2.83
2167	2690	0.952010	GTCGGCCGGACTAAGCAAAA	60.952	55.000	27.83	0.00	42.62	2.44
2177	2700	1.766625	TAGGTTTTTGGTCGGCCGGA	61.767	55.000	27.83	9.51	37.67	5.14
2190	2713	5.297799	AGAGATCAGGGGGTAATTAGGTTT	58.702	41.667	0.00	0.00	0.00	3.27
2308	2858	1.603678	GCTGTCGGGTCTTTACGTTCA	60.604	52.381	0.00	0.00	0.00	3.18
2336	2886	2.223688	CGAGAGCCTCATCGACAAGATT	60.224	50.000	7.51	0.00	41.40	2.40
2414	2964	0.459899	TCGACAATCCCGAGGATGTG	59.540	55.000	6.24	8.87	42.27	3.21
2735	3285	9.293404	CAACATAAATCCCAGATAAGTGATCAT	57.707	33.333	0.00	0.00	36.98	2.45
2768	3318	2.267961	CAACCCCGACCTACAGGC	59.732	66.667	0.00	0.00	39.32	4.85
2906	3466	1.422402	GGTTCCCACTTACCCTCACAA	59.578	52.381	0.00	0.00	0.00	3.33

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.