AutoCloner

Multiple sequence alignment - TraesCS1A01G338800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G338800	chr1A	100.000	2330	0	0	1	2330	528297320	528294991	0.000000e+00	4303
1	TraesCS1A01G338800	chr1A	88.962	1667	154	18	1	1641	545474047	545475709	0.000000e+00	2032
2	TraesCS1A01G338800	chr1A	89.177	693	73	2	1639	2330	237131012	237131703	0.000000e+00	863
3	TraesCS1A01G338800	chr1A	86.667	255	30	4	77	328	545473703	545473956	1.760000e-71	279
4	TraesCS1A01G338800	chr7D	88.896	1666	137	16	1	1641	616459440	616457798	0.000000e+00	2008
5	TraesCS1A01G338800	chr1B	86.867	1660	182	19	2	1641	617087721	617089364	0.000000e+00	1825
6	TraesCS1A01G338800	chr1B	91.639	299	22	3	2	298	617283888	617284185	5.990000e-111	411
7	TraesCS1A01G338800	chr1B	87.109	256	29	3	76	328	617087375	617087629	1.050000e-73	287
8	TraesCS1A01G338800	chr1B	88.596	228	22	3	76	300	617283550	617283776	8.200000e-70	274
9	TraesCS1A01G338800	chr1B	85.268	224	16	9	537	745	617284438	617284659	5.040000e-52	215
10	TraesCS1A01G338800	chr2A	90.620	693	64	1	1639	2330	693450145	693450837	0.000000e+00	918
11	TraesCS1A01G338800	chr2A	89.813	697	65	4	1639	2330	385084276	385084971	0.000000e+00	889
12	TraesCS1A01G338800	chr2A	89.466	693	71	2	1640	2330	511794076	511793384	0.000000e+00	874
13	TraesCS1A01G338800	chr2A	89.193	694	71	4	1639	2330	774638089	774638780	0.000000e+00	863
14	TraesCS1A01G338800	chr2A	89.146	691	74	1	1640	2330	431745369	431746058	0.000000e+00	859
15	TraesCS1A01G338800	chr2A	88.633	695	75	2	1639	2330	148324207	148323514	0.000000e+00	843
16	TraesCS1A01G338800	chr6A	90.230	696	62	5	1639	2330	383434901	383435594	0.000000e+00	904
17	TraesCS1A01G338800	chr4A	89.755	693	68	3	1639	2330	214116637	214115947	0.000000e+00	883
18	TraesCS1A01G338800	chr1D	88.707	611	61	7	1	606	450203303	450203910	0.000000e+00	739
19	TraesCS1A01G338800	chr1D	86.719	256	26	7	76	328	450202962	450203212	6.340000e-71	278

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G338800	chr1A	528294991	528297320	2329	True	4303.0	4303	100.0000	1	2330	1	chr1A.!!$R1	2329
1	TraesCS1A01G338800	chr1A	545473703	545475709	2006	False	1155.5	2032	87.8145	1	1641	2	chr1A.!!$F2	1640
2	TraesCS1A01G338800	chr1A	237131012	237131703	691	False	863.0	863	89.1770	1639	2330	1	chr1A.!!$F1	691
3	TraesCS1A01G338800	chr7D	616457798	616459440	1642	True	2008.0	2008	88.8960	1	1641	1	chr7D.!!$R1	1640
4	TraesCS1A01G338800	chr1B	617087375	617089364	1989	False	1056.0	1825	86.9880	2	1641	2	chr1B.!!$F1	1639
5	TraesCS1A01G338800	chr1B	617283550	617284659	1109	False	300.0	411	88.5010	2	745	3	chr1B.!!$F2	743
6	TraesCS1A01G338800	chr2A	693450145	693450837	692	False	918.0	918	90.6200	1639	2330	1	chr2A.!!$F3	691
7	TraesCS1A01G338800	chr2A	385084276	385084971	695	False	889.0	889	89.8130	1639	2330	1	chr2A.!!$F1	691
8	TraesCS1A01G338800	chr2A	511793384	511794076	692	True	874.0	874	89.4660	1640	2330	1	chr2A.!!$R2	690
9	TraesCS1A01G338800	chr2A	774638089	774638780	691	False	863.0	863	89.1930	1639	2330	1	chr2A.!!$F4	691
10	TraesCS1A01G338800	chr2A	431745369	431746058	689	False	859.0	859	89.1460	1640	2330	1	chr2A.!!$F2	690
11	TraesCS1A01G338800	chr2A	148323514	148324207	693	True	843.0	843	88.6330	1639	2330	1	chr2A.!!$R1	691
12	TraesCS1A01G338800	chr6A	383434901	383435594	693	False	904.0	904	90.2300	1639	2330	1	chr6A.!!$F1	691
13	TraesCS1A01G338800	chr4A	214115947	214116637	690	True	883.0	883	89.7550	1639	2330	1	chr4A.!!$R1	691
14	TraesCS1A01G338800	chr1D	450202962	450203910	948	False	508.5	739	87.7130	1	606	2	chr1D.!!$F1	605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
705	1142	1.135527	TGCAGCAATGGCAATAGCTTC	59.864	47.619	8.67	5.62	44.61	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2122	2577	0.03779	GGGGCATAGCTGTCGATCTC	60.038	60.0	0.0	0.0	0.0	2.75	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	373	9.699410	GGATATTAATCATTTGGATATCCACCA	57.301	33.333	24.47	14.17	44.05	4.17
121	467	3.990092	AGAGTTCTTGCATTCACGTACA	58.010	40.909	0.00	0.00	0.00	2.90
123	469	4.389992	AGAGTTCTTGCATTCACGTACATG	59.610	41.667	0.00	0.00	0.00	3.21
222	570	9.799106	AATACGAGGATATCCAAAATGAAGATT	57.201	29.630	23.81	7.42	38.89	2.40
226	574	8.223769	CGAGGATATCCAAAATGAAGATTAACG	58.776	37.037	23.81	4.01	38.89	3.18
300	648	5.822519	GTGTTGCATTCATGGACCTATCTAA	59.177	40.000	0.00	0.00	0.00	2.10
301	649	5.822519	TGTTGCATTCATGGACCTATCTAAC	59.177	40.000	0.00	0.00	0.00	2.34
303	651	4.343814	TGCATTCATGGACCTATCTAACGA	59.656	41.667	0.00	0.00	0.00	3.85
305	653	5.177696	GCATTCATGGACCTATCTAACGAAC	59.822	44.000	0.00	0.00	0.00	3.95
337	688	4.897076	ACCATGATATCCAACATGTGCATT	59.103	37.500	0.00	0.00	41.26	3.56
465	820	9.712305	ACATATTAATACAAGGAGATCCGAAAG	57.288	33.333	0.00	0.00	42.08	2.62
483	838	4.207224	CGAAAGGAGCGTCAACATATGTAG	59.793	45.833	9.21	2.72	0.00	2.74
498	853	9.828039	CAACATATGTAGATATCTATGCATGGT	57.172	33.333	15.43	13.35	0.00	3.55
502	857	6.916360	TGTAGATATCTATGCATGGTGTGA	57.084	37.500	15.43	0.21	0.00	3.58
548	903	5.339177	TCGCCAAACTGCATAATACATTTG	58.661	37.500	0.00	0.00	0.00	2.32
556	911	7.686438	ACTGCATAATACATTTGTGAAGTCA	57.314	32.000	0.00	0.00	0.00	3.41
616	1042	2.519262	TCCATCCAACCATCCATCCATT	59.481	45.455	0.00	0.00	0.00	3.16
617	1043	2.895404	CCATCCAACCATCCATCCATTC	59.105	50.000	0.00	0.00	0.00	2.67
618	1044	3.568443	CATCCAACCATCCATCCATTCA	58.432	45.455	0.00	0.00	0.00	2.57
620	1046	5.326900	CATCCAACCATCCATCCATTCATA	58.673	41.667	0.00	0.00	0.00	2.15
622	1048	4.167697	TCCAACCATCCATCCATTCATACA	59.832	41.667	0.00	0.00	0.00	2.29
656	1093	3.815809	TGTCCCCAACACTCTTAGTTTG	58.184	45.455	0.00	0.00	31.20	2.93
703	1140	1.187974	TTGCAGCAATGGCAATAGCT	58.812	45.000	2.83	5.95	45.57	3.32
705	1142	1.135527	TGCAGCAATGGCAATAGCTTC	59.864	47.619	8.67	5.62	44.61	3.86
764	1201	2.303022	CTCTTTTCCTCAGCCACCACTA	59.697	50.000	0.00	0.00	0.00	2.74
856	1294	7.394016	TGCTTCAATAAACTCCTCTGAATACA	58.606	34.615	0.00	0.00	0.00	2.29
896	1337	4.796231	CGTCTCAACCCTCCGGCG	62.796	72.222	0.00	0.00	0.00	6.46
938	1379	1.747444	AAGGACCTTCATGACCTGGT	58.253	50.000	12.42	12.42	35.23	4.00
939	1380	1.747444	AGGACCTTCATGACCTGGTT	58.253	50.000	13.43	0.00	32.30	3.67
1040	1481	1.004628	TGGCACATCAATAGCACACCT	59.995	47.619	0.00	0.00	0.00	4.00
1044	1485	3.614092	CACATCAATAGCACACCTCCTT	58.386	45.455	0.00	0.00	0.00	3.36
1045	1486	3.624861	CACATCAATAGCACACCTCCTTC	59.375	47.826	0.00	0.00	0.00	3.46
1060	1501	1.439365	CTTCGTTTGTGCGAGCTGC	60.439	57.895	0.00	0.00	42.10	5.25
1072	1513	1.153568	GAGCTGCACTATGACGCCA	60.154	57.895	1.02	0.00	0.00	5.69
1074	1515	1.741401	GCTGCACTATGACGCCACA	60.741	57.895	0.00	0.00	0.00	4.17
1089	1530	1.813513	CCACAGTGACCATCCTCAAC	58.186	55.000	0.62	0.00	0.00	3.18
1090	1531	1.072173	CCACAGTGACCATCCTCAACA	59.928	52.381	0.62	0.00	0.00	3.33
1094	1535	3.055530	ACAGTGACCATCCTCAACATCTC	60.056	47.826	0.00	0.00	0.00	2.75
1114	1555	1.608055	CAACACCATGCTCAAGGACA	58.392	50.000	0.00	0.00	0.00	4.02
1141	1582	1.419762	GGCCCAAAGGTGGTGAAAAAT	59.580	47.619	0.00	0.00	44.30	1.82
1152	1593	2.028876	GGTGAAAAATATGGACCCCCG	58.971	52.381	0.00	0.00	34.29	5.73
1168	1609	3.254089	CCCCCGTCCTATTATTTACCCT	58.746	50.000	0.00	0.00	0.00	4.34
1189	1630	0.255604	CTGTGTGGGTATGGCATCCA	59.744	55.000	1.65	3.00	38.19	3.41
1223	1664	1.180456	TGTGGGCATGAGCTTGTTGG	61.180	55.000	0.00	0.00	41.70	3.77
1252	1693	0.237498	GCAGGAGGCGTTGTACAAAC	59.763	55.000	10.51	5.59	0.00	2.93
1266	1707	7.096230	GCGTTGTACAAACAAAATATTGAGCTT	60.096	33.333	10.51	0.00	46.84	3.74
1270	1711	4.685628	ACAAACAAAATATTGAGCTTGGCG	59.314	37.500	0.00	0.00	38.94	5.69
1272	1713	4.782019	ACAAAATATTGAGCTTGGCGAA	57.218	36.364	0.00	0.00	38.94	4.70
1280	1721	0.741221	GAGCTTGGCGAACTGGGTAG	60.741	60.000	0.00	0.00	0.00	3.18
1287	1728	1.019805	GCGAACTGGGTAGCCTCAAC	61.020	60.000	13.11	1.02	0.00	3.18
1297	1738	0.605319	TAGCCTCAACGTTGCCTTGG	60.605	55.000	23.47	20.34	0.00	3.61
1317	1758	2.235016	GTGGCGCCATATTGGGATTTA	58.765	47.619	35.23	0.00	38.19	1.40
1390	1831	9.490663	GTTGTGATATCCATTTTACTTTCTTCG	57.509	33.333	0.00	0.00	0.00	3.79
1396	1837	4.215399	TCCATTTTACTTTCTTCGTGCCTG	59.785	41.667	0.00	0.00	0.00	4.85
1454	1895	0.105039	GTCCCATCGATGTCCACTCC	59.895	60.000	23.27	1.34	0.00	3.85
1458	1899	1.114627	CATCGATGTCCACTCCCTGA	58.885	55.000	17.50	0.00	0.00	3.86
1461	1902	0.898320	CGATGTCCACTCCCTGAACT	59.102	55.000	0.00	0.00	0.00	3.01
1463	1904	1.902508	GATGTCCACTCCCTGAACTCA	59.097	52.381	0.00	0.00	0.00	3.41
1469	1911	3.769844	TCCACTCCCTGAACTCACTATTC	59.230	47.826	0.00	0.00	0.00	1.75
1476	1918	7.039363	ACTCCCTGAACTCACTATTCTATATGC	60.039	40.741	0.00	0.00	0.00	3.14
1539	1988	2.703007	AGATGCCAAGTAGGATCTGACC	59.297	50.000	0.00	0.00	41.22	4.02
1545	1994	0.339859	AGTAGGATCTGACCTGGCCA	59.660	55.000	4.71	4.71	40.81	5.36
1546	1995	1.061812	AGTAGGATCTGACCTGGCCAT	60.062	52.381	5.51	0.00	40.81	4.40
1547	1996	1.346068	GTAGGATCTGACCTGGCCATC	59.654	57.143	5.51	1.61	40.81	3.51
1551	2000	1.487976	GATCTGACCTGGCCATCTCAA	59.512	52.381	5.51	1.91	0.00	3.02
1576	2025	1.070289	GGTAGTTTAGATGGGCCGAGG	59.930	57.143	0.00	0.00	0.00	4.63
1618	2067	8.970020	CATTTAGCTCAATATAATTGGGCCATA	58.030	33.333	18.41	0.00	46.65	2.74
1637	2086	7.883311	GGGCCATATCAAAAGCTAGTTTAGATA	59.117	37.037	4.39	13.18	0.00	1.98
1699	2148	0.790993	CCCTAGCCCCCTCCAGTATA	59.209	60.000	0.00	0.00	0.00	1.47
1732	2181	3.132467	GGAGGGTTTAGTTCGTAGATGCT	59.868	47.826	0.00	0.00	35.04	3.79
1735	2184	3.617263	GGGTTTAGTTCGTAGATGCTGTG	59.383	47.826	0.00	0.00	35.04	3.66
1824	2274	5.990668	ACCCCTATACTCATCAAAGTCAAC	58.009	41.667	0.00	0.00	0.00	3.18
1825	2275	5.050490	CCCCTATACTCATCAAAGTCAACG	58.950	45.833	0.00	0.00	0.00	4.10
1864	2314	4.079827	CTCCATCAAGAGGGCCCT	57.920	61.111	29.18	29.18	31.15	5.19
1872	2322	0.914417	CAAGAGGGCCCTAACCTGGA	60.914	60.000	28.78	0.00	38.79	3.86
1931	2381	1.174078	TAGACGCACAGTTCGGGACA	61.174	55.000	0.00	0.00	0.00	4.02
1940	2390	1.611556	GTTCGGGACACCCTACCCT	60.612	63.158	5.27	0.00	42.67	4.34
2000	2450	3.701664	TGAGAGTTCCTCAGTGCTATCA	58.298	45.455	0.00	0.00	46.38	2.15
2082	2537	2.480587	GGGCCAAATTTTCGTATTCGGG	60.481	50.000	4.39	0.00	37.69	5.14
2122	2577	3.356529	ACTCAATTGGCTACCTTGAGG	57.643	47.619	19.46	0.00	46.46	3.86
2321	2776	0.462581	CTTATGGAGCTTGCTGCCGA	60.463	55.000	11.39	0.00	44.23	5.54

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	373	7.124573	TCATAAATGTAGTATGCAGTCTGGT	57.875	36.000	1.14	0.00	31.11	4.00
31	377	7.171678	GGGACTTCATAAATGTAGTATGCAGTC	59.828	40.741	12.76	12.76	44.59	3.51
167	513	9.671279	TGCTCTCTCTATTCACAAATTTTGATA	57.329	29.630	15.81	3.09	0.00	2.15
300	648	9.031537	TGGATATCATGGTAGTAATATGTTCGT	57.968	33.333	4.83	0.00	0.00	3.85
301	649	9.869757	TTGGATATCATGGTAGTAATATGTTCG	57.130	33.333	4.83	0.00	0.00	3.95
328	679	7.482474	TGTTCATAAATACCTCAATGCACATG	58.518	34.615	0.00	0.00	0.00	3.21
329	680	7.643569	TGTTCATAAATACCTCAATGCACAT	57.356	32.000	0.00	0.00	0.00	3.21
332	683	6.435591	TGGTTGTTCATAAATACCTCAATGCA	59.564	34.615	0.00	0.00	0.00	3.96
337	688	9.693739	ATGTATTGGTTGTTCATAAATACCTCA	57.306	29.630	0.00	0.00	34.34	3.86
377	728	8.739039	TCATGGATATCAAAAAGTTCGATGTTT	58.261	29.630	4.83	0.00	0.00	2.83
384	735	7.041508	AGCTCGATCATGGATATCAAAAAGTTC	60.042	37.037	4.83	0.00	0.00	3.01
386	737	6.294473	AGCTCGATCATGGATATCAAAAAGT	58.706	36.000	4.83	0.00	0.00	2.66
465	820	6.857956	AGATATCTACATATGTTGACGCTCC	58.142	40.000	19.98	9.46	33.05	4.70
525	880	5.105957	ACAAATGTATTATGCAGTTTGGCGA	60.106	36.000	15.76	0.00	36.28	5.54
583	1006	3.555168	GGTTGGATGGATCGAGGTGATAC	60.555	52.174	0.00	0.00	37.47	2.24
616	1042	8.443979	TGGGGACAATTGTATATGAATGTATGA	58.556	33.333	11.95	0.00	37.44	2.15
617	1043	8.634335	TGGGGACAATTGTATATGAATGTATG	57.366	34.615	11.95	0.00	37.44	2.39
656	1093	8.268850	TCAACTAGAAGCCTTGAATTGTATTC	57.731	34.615	0.00	0.00	0.00	1.75
703	1140	1.182667	AGATGATGGTGGTCGTCGAA	58.817	50.000	0.00	0.00	38.79	3.71
705	1142	1.135139	AGAAGATGATGGTGGTCGTCG	59.865	52.381	0.00	0.00	38.79	5.12
764	1201	2.872245	CAATGTCGTTGTTGGTCTGAGT	59.128	45.455	0.00	0.00	33.01	3.41
840	1278	7.335422	GTGATGTGATTGTATTCAGAGGAGTTT	59.665	37.037	0.00	0.00	0.00	2.66
896	1337	0.460987	CTCATCACTCCGCTTGTCCC	60.461	60.000	0.00	0.00	0.00	4.46
938	1379	4.279922	TGAGAATGTCTACACCAACGAGAA	59.720	41.667	0.00	0.00	0.00	2.87
939	1380	3.824443	TGAGAATGTCTACACCAACGAGA	59.176	43.478	0.00	0.00	0.00	4.04
1031	1472	1.414919	ACAAACGAAGGAGGTGTGCTA	59.585	47.619	0.00	0.00	0.00	3.49
1040	1481	1.069090	AGCTCGCACAAACGAAGGA	59.931	52.632	0.00	0.00	42.39	3.36
1072	1513	2.909006	AGATGTTGAGGATGGTCACTGT	59.091	45.455	0.00	0.00	0.00	3.55
1074	1515	2.503356	GGAGATGTTGAGGATGGTCACT	59.497	50.000	0.00	0.00	0.00	3.41
1089	1530	2.118313	TGAGCATGGTGTTGGAGATG	57.882	50.000	0.00	0.00	0.00	2.90
1090	1531	2.619849	CCTTGAGCATGGTGTTGGAGAT	60.620	50.000	0.00	0.00	0.00	2.75
1094	1535	0.883833	GTCCTTGAGCATGGTGTTGG	59.116	55.000	0.00	0.98	0.00	3.77
1114	1555	3.828023	ACCTTTGGGCCCGTGGTT	61.828	61.111	22.73	10.68	35.63	3.67
1141	1582	3.858696	ATAATAGGACGGGGGTCCATA	57.141	47.619	15.07	6.10	45.66	2.74
1152	1593	7.215085	CCACACAGTAGGGTAAATAATAGGAC	58.785	42.308	0.00	0.00	0.00	3.85
1168	1609	1.488812	GGATGCCATACCCACACAGTA	59.511	52.381	0.00	0.00	0.00	2.74
1189	1630	0.603569	CCACAGTAGTCGACAAGGCT	59.396	55.000	19.50	6.84	38.92	4.58
1199	1640	0.987294	AAGCTCATGCCCACAGTAGT	59.013	50.000	0.00	0.00	40.80	2.73
1252	1693	4.560035	CAGTTCGCCAAGCTCAATATTTTG	59.440	41.667	0.00	0.00	0.00	2.44
1266	1707	2.606519	AGGCTACCCAGTTCGCCA	60.607	61.111	0.00	0.00	44.85	5.69
1270	1711	0.320697	ACGTTGAGGCTACCCAGTTC	59.679	55.000	0.00	0.00	0.00	3.01
1272	1713	0.034896	CAACGTTGAGGCTACCCAGT	59.965	55.000	23.90	0.00	0.00	4.00
1280	1721	2.193536	ACCAAGGCAACGTTGAGGC	61.194	57.895	31.62	17.70	46.39	4.70
1297	1738	1.039856	AAATCCCAATATGGCGCCAC	58.960	50.000	35.50	3.26	35.79	5.01
1396	1837	9.087424	TGCACGCATATAGAAACTATCATAATC	57.913	33.333	0.00	0.00	0.00	1.75
1454	1895	7.383572	GTGTGCATATAGAATAGTGAGTTCAGG	59.616	40.741	0.00	0.00	0.00	3.86
1458	1899	6.806751	ACGTGTGCATATAGAATAGTGAGTT	58.193	36.000	0.00	0.00	0.00	3.01
1461	1902	6.700081	GGAAACGTGTGCATATAGAATAGTGA	59.300	38.462	0.00	0.00	0.00	3.41
1463	1904	6.479001	GTGGAAACGTGTGCATATAGAATAGT	59.521	38.462	2.26	0.00	0.00	2.12
1469	1911	4.260743	CCATGTGGAAACGTGTGCATATAG	60.261	45.833	9.11	0.00	37.39	1.31
1476	1918	0.317770	GTGCCATGTGGAAACGTGTG	60.318	55.000	2.55	0.00	37.39	3.82
1539	1988	2.965671	ACCCATATTGAGATGGCCAG	57.034	50.000	13.05	0.00	44.49	4.85
1545	1994	7.529560	GCCCATCTAAACTACCCATATTGAGAT	60.530	40.741	0.00	0.00	0.00	2.75
1546	1995	6.239887	GCCCATCTAAACTACCCATATTGAGA	60.240	42.308	0.00	0.00	0.00	3.27
1547	1996	5.940470	GCCCATCTAAACTACCCATATTGAG	59.060	44.000	0.00	0.00	0.00	3.02
1551	2000	3.263425	CGGCCCATCTAAACTACCCATAT	59.737	47.826	0.00	0.00	0.00	1.78
1608	2057	4.808042	ACTAGCTTTTGATATGGCCCAAT	58.192	39.130	0.00	0.00	0.00	3.16
1637	2086	7.688918	ACAGAGAAAGGAATCTTCATATCCT	57.311	36.000	0.00	0.00	45.43	3.24
1722	2171	7.214467	TGTATGATTATCACAGCATCTACGA	57.786	36.000	0.00	0.00	0.00	3.43
1729	2178	6.870439	GTCTAGCATGTATGATTATCACAGCA	59.130	38.462	0.00	0.00	0.00	4.41
1732	2181	8.810041	AGATGTCTAGCATGTATGATTATCACA	58.190	33.333	0.00	0.00	38.06	3.58
1735	2184	9.964303	CCTAGATGTCTAGCATGTATGATTATC	57.036	37.037	10.84	0.00	43.47	1.75
1824	2274	2.403252	AAACCCTACATCCTGCTTCG	57.597	50.000	0.00	0.00	0.00	3.79
1825	2275	3.945921	GGTAAAACCCTACATCCTGCTTC	59.054	47.826	0.00	0.00	30.04	3.86
1864	2314	4.383335	GGGACACGATGTTTATCCAGGTTA	60.383	45.833	0.00	0.00	0.00	2.85
1872	2322	1.408266	GGCAGGGGACACGATGTTTAT	60.408	52.381	0.00	0.00	0.00	1.40
1931	2381	0.178958	CGGCAGATCTAGGGTAGGGT	60.179	60.000	0.00	0.00	0.00	4.34
1940	2390	2.614481	GGTGTCAAAACCGGCAGATCTA	60.614	50.000	0.00	0.00	0.00	1.98
1991	2441	6.769822	CCATCAAATCCTTAGTTGATAGCACT	59.230	38.462	1.27	0.00	45.89	4.40
2000	2450	5.355350	CGAAAGAGCCATCAAATCCTTAGTT	59.645	40.000	0.00	0.00	0.00	2.24
2113	2568	2.025155	GCTGTCGATCTCCTCAAGGTA	58.975	52.381	0.00	0.00	36.34	3.08
2122	2577	0.037790	GGGGCATAGCTGTCGATCTC	60.038	60.000	0.00	0.00	0.00	2.75
2246	2701	1.001641	GACATGTTGGCCTGCTCCT	60.002	57.895	3.32	0.00	0.00	3.69
2283	2738	2.342648	GCAAAGAGTCCGACGGGT	59.657	61.111	15.25	0.99	33.83	5.28

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.