Multiple sequence alignment - TraesCS1A01G337500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G337500 chr1A 100.000 2435 0 0 1 2435 526829570 526832004 0 4423
1 TraesCS1A01G337500 chr6D 99.677 928 3 0 735 1662 389246541 389245614 0 1698
2 TraesCS1A01G337500 chr6D 98.034 763 11 1 1673 2435 389246081 389245323 0 1323
3 TraesCS1A01G337500 chr6D 97.107 726 19 2 1 724 168265542 168266267 0 1223
4 TraesCS1A01G337500 chr6D 97.107 726 19 2 1 724 389246865 389246140 0 1223
5 TraesCS1A01G337500 chr5D 99.677 928 3 0 735 1662 503244553 503245480 0 1698
6 TraesCS1A01G337500 chr5D 99.353 928 4 1 735 1662 503266022 503265097 0 1679
7 TraesCS1A01G337500 chr5D 97.903 763 12 1 1673 2435 503245013 503245771 0 1317
8 TraesCS1A01G337500 chr5D 97.245 726 18 2 1 724 503266346 503265621 0 1229
9 TraesCS1A01G337500 chr5D 97.107 726 19 2 1 724 503244229 503244954 0 1223
10 TraesCS1A01G337500 chr2D 99.677 928 3 0 735 1662 591983890 591984817 0 1698
11 TraesCS1A01G337500 chr2D 97.903 763 12 1 1673 2435 591984350 591985108 0 1317
12 TraesCS1A01G337500 chr2D 97.107 726 19 2 1 724 591983566 591984291 0 1223
13 TraesCS1A01G337500 chr2A 99.677 928 3 0 735 1662 726907174 726906247 0 1698
14 TraesCS1A01G337500 chr2A 97.903 763 12 1 1673 2435 726906714 726905956 0 1317
15 TraesCS1A01G337500 chr2A 97.107 726 19 2 1 724 726907498 726906773 0 1223
16 TraesCS1A01G337500 chr7B 99.569 928 4 0 735 1662 662725685 662726612 0 1692
17 TraesCS1A01G337500 chr7B 99.569 928 4 0 735 1662 663100144 663099217 0 1692
18 TraesCS1A01G337500 chr7B 97.903 763 12 1 1673 2435 662726145 662726903 0 1317
19 TraesCS1A01G337500 chr7B 97.903 763 12 1 1673 2435 663099684 663098926 0 1317
20 TraesCS1A01G337500 chr7B 97.107 726 19 2 1 724 663100468 663099743 0 1223
21 TraesCS1A01G337500 chr3A 99.353 928 5 1 735 1662 66005851 66004925 0 1679
22 TraesCS1A01G337500 chr3A 97.107 726 19 2 1 724 66006175 66005450 0 1223
23 TraesCS1A01G337500 chr7D 99.353 927 5 1 735 1661 231555144 231554219 0 1677
24 TraesCS1A01G337500 chr7D 97.772 763 13 1 1673 2435 231554685 231553927 0 1312
25 TraesCS1A01G337500 chr1D 98.034 763 13 1 1673 2435 254525346 254526106 0 1325
26 TraesCS1A01G337500 chr3D 97.903 763 12 1 1673 2435 589263785 589263027 0 1317
27 TraesCS1A01G337500 chr3D 96.970 726 20 2 1 724 589264567 589263842 0 1218
28 TraesCS1A01G337500 chr3B 97.903 763 12 1 1673 2435 201539263 201540021 0 1317
29 TraesCS1A01G337500 chrUn 96.832 726 21 2 1 724 388831534 388830809 0 1212


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G337500 chr1A 526829570 526832004 2434 False 4423.000000 4423 100.000000 1 2435 1 chr1A.!!$F1 2434
1 TraesCS1A01G337500 chr6D 389245323 389246865 1542 True 1414.666667 1698 98.272667 1 2435 3 chr6D.!!$R1 2434
2 TraesCS1A01G337500 chr6D 168265542 168266267 725 False 1223.000000 1223 97.107000 1 724 1 chr6D.!!$F1 723
3 TraesCS1A01G337500 chr5D 503265097 503266346 1249 True 1454.000000 1679 98.299000 1 1662 2 chr5D.!!$R1 1661
4 TraesCS1A01G337500 chr5D 503244229 503245771 1542 False 1412.666667 1698 98.229000 1 2435 3 chr5D.!!$F1 2434
5 TraesCS1A01G337500 chr2D 591983566 591985108 1542 False 1412.666667 1698 98.229000 1 2435 3 chr2D.!!$F1 2434
6 TraesCS1A01G337500 chr2A 726905956 726907498 1542 True 1412.666667 1698 98.229000 1 2435 3 chr2A.!!$R1 2434
7 TraesCS1A01G337500 chr7B 662725685 662726903 1218 False 1504.500000 1692 98.736000 735 2435 2 chr7B.!!$F1 1700
8 TraesCS1A01G337500 chr7B 663098926 663100468 1542 True 1410.666667 1692 98.193000 1 2435 3 chr7B.!!$R1 2434
9 TraesCS1A01G337500 chr3A 66004925 66006175 1250 True 1451.000000 1679 98.230000 1 1662 2 chr3A.!!$R1 1661
10 TraesCS1A01G337500 chr7D 231553927 231555144 1217 True 1494.500000 1677 98.562500 735 2435 2 chr7D.!!$R1 1700
11 TraesCS1A01G337500 chr1D 254525346 254526106 760 False 1325.000000 1325 98.034000 1673 2435 1 chr1D.!!$F1 762
12 TraesCS1A01G337500 chr3D 589263027 589264567 1540 True 1267.500000 1317 97.436500 1 2435 2 chr3D.!!$R1 2434
13 TraesCS1A01G337500 chr3B 201539263 201540021 758 False 1317.000000 1317 97.903000 1673 2435 1 chr3B.!!$F1 762
14 TraesCS1A01G337500 chrUn 388830809 388831534 725 True 1212.000000 1212 96.832000 1 724 1 chrUn.!!$R1 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
460 462 0.030773 CGCGACAGGCTATTAGCTCA 59.969 55.0 15.02 0.0 41.99 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 1832 1.00444 GCTGCTTTCTCCAGACCGT 60.004 57.895 0.0 0.0 32.03 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.142093 GCTGGCCATGTTTGAAGTCATTAT 60.142 41.667 5.51 0.00 0.00 1.28
42 43 4.096231 TGGCCATGTTTGAAGTCATTATCG 59.904 41.667 0.00 0.00 0.00 2.92
48 49 8.450964 CCATGTTTGAAGTCATTATCGTTAACT 58.549 33.333 3.71 0.00 0.00 2.24
58 59 6.200475 GTCATTATCGTTAACTGTAAGGAGGC 59.800 42.308 11.81 2.60 37.49 4.70
143 144 1.614317 CGGCTGGATCACCTCCTTTTT 60.614 52.381 0.00 0.00 45.21 1.94
196 197 7.433680 GGTATTTTGGTTTGACACTTCTTCAT 58.566 34.615 0.00 0.00 0.00 2.57
217 218 1.827344 GCCCAAAAAGAAGGCAGCTAT 59.173 47.619 0.00 0.00 46.34 2.97
355 357 3.797353 CGTCCCCATGTCCCCCTG 61.797 72.222 0.00 0.00 0.00 4.45
356 358 2.614013 GTCCCCATGTCCCCCTGT 60.614 66.667 0.00 0.00 0.00 4.00
357 359 2.613696 TCCCCATGTCCCCCTGTG 60.614 66.667 0.00 0.00 0.00 3.66
358 360 3.743017 CCCCATGTCCCCCTGTGG 61.743 72.222 0.00 0.00 0.00 4.17
359 361 2.941025 CCCATGTCCCCCTGTGGT 60.941 66.667 0.00 0.00 0.00 4.16
360 362 2.356278 CCATGTCCCCCTGTGGTG 59.644 66.667 0.00 0.00 0.00 4.17
361 363 2.538141 CCATGTCCCCCTGTGGTGT 61.538 63.158 0.00 0.00 0.00 4.16
362 364 1.303561 CATGTCCCCCTGTGGTGTG 60.304 63.158 0.00 0.00 0.00 3.82
363 365 2.538141 ATGTCCCCCTGTGGTGTGG 61.538 63.158 0.00 0.00 0.00 4.17
364 366 4.660938 GTCCCCCTGTGGTGTGGC 62.661 72.222 0.00 0.00 0.00 5.01
370 372 3.740397 CTGTGGTGTGGCGGCATG 61.740 66.667 17.19 0.00 0.00 4.06
375 377 4.820744 GTGTGGCGGCATGGGGAT 62.821 66.667 17.19 0.00 0.00 3.85
376 378 4.818863 TGTGGCGGCATGGGGATG 62.819 66.667 17.19 0.00 0.00 3.51
377 379 4.820744 GTGGCGGCATGGGGATGT 62.821 66.667 17.19 0.00 0.00 3.06
378 380 4.504596 TGGCGGCATGGGGATGTC 62.505 66.667 7.97 0.00 0.00 3.06
379 381 4.504596 GGCGGCATGGGGATGTCA 62.505 66.667 3.07 0.00 0.00 3.58
380 382 2.440065 GCGGCATGGGGATGTCAA 60.440 61.111 0.00 0.00 0.00 3.18
381 383 2.051518 GCGGCATGGGGATGTCAAA 61.052 57.895 0.00 0.00 0.00 2.69
382 384 1.603236 GCGGCATGGGGATGTCAAAA 61.603 55.000 0.00 0.00 0.00 2.44
383 385 0.457035 CGGCATGGGGATGTCAAAAG 59.543 55.000 0.00 0.00 0.00 2.27
384 386 0.826062 GGCATGGGGATGTCAAAAGG 59.174 55.000 0.00 0.00 0.00 3.11
385 387 1.619432 GGCATGGGGATGTCAAAAGGA 60.619 52.381 0.00 0.00 0.00 3.36
386 388 2.178580 GCATGGGGATGTCAAAAGGAA 58.821 47.619 0.00 0.00 0.00 3.36
387 389 2.566724 GCATGGGGATGTCAAAAGGAAA 59.433 45.455 0.00 0.00 0.00 3.13
388 390 3.368739 GCATGGGGATGTCAAAAGGAAAG 60.369 47.826 0.00 0.00 0.00 2.62
389 391 2.888212 TGGGGATGTCAAAAGGAAAGG 58.112 47.619 0.00 0.00 0.00 3.11
390 392 2.179427 GGGGATGTCAAAAGGAAAGGG 58.821 52.381 0.00 0.00 0.00 3.95
391 393 2.225267 GGGGATGTCAAAAGGAAAGGGA 60.225 50.000 0.00 0.00 0.00 4.20
392 394 3.566553 GGGGATGTCAAAAGGAAAGGGAT 60.567 47.826 0.00 0.00 0.00 3.85
393 395 3.448660 GGGATGTCAAAAGGAAAGGGATG 59.551 47.826 0.00 0.00 0.00 3.51
394 396 3.448660 GGATGTCAAAAGGAAAGGGATGG 59.551 47.826 0.00 0.00 0.00 3.51
395 397 3.893753 TGTCAAAAGGAAAGGGATGGA 57.106 42.857 0.00 0.00 0.00 3.41
396 398 3.766545 TGTCAAAAGGAAAGGGATGGAG 58.233 45.455 0.00 0.00 0.00 3.86
397 399 3.140144 TGTCAAAAGGAAAGGGATGGAGT 59.860 43.478 0.00 0.00 0.00 3.85
398 400 4.152647 GTCAAAAGGAAAGGGATGGAGTT 58.847 43.478 0.00 0.00 0.00 3.01
399 401 4.588951 GTCAAAAGGAAAGGGATGGAGTTT 59.411 41.667 0.00 0.00 0.00 2.66
400 402 5.070446 GTCAAAAGGAAAGGGATGGAGTTTT 59.930 40.000 0.00 0.00 0.00 2.43
401 403 5.665360 TCAAAAGGAAAGGGATGGAGTTTTT 59.335 36.000 0.00 0.00 0.00 1.94
402 404 5.808366 AAAGGAAAGGGATGGAGTTTTTC 57.192 39.130 0.00 0.00 0.00 2.29
403 405 4.749048 AGGAAAGGGATGGAGTTTTTCT 57.251 40.909 0.00 0.00 0.00 2.52
404 406 4.667573 AGGAAAGGGATGGAGTTTTTCTC 58.332 43.478 0.00 0.00 42.07 2.87
405 407 3.440522 GGAAAGGGATGGAGTTTTTCTCG 59.559 47.826 0.00 0.00 43.60 4.04
406 408 2.115343 AGGGATGGAGTTTTTCTCGC 57.885 50.000 0.00 0.00 43.60 5.03
407 409 1.630878 AGGGATGGAGTTTTTCTCGCT 59.369 47.619 0.00 0.00 43.60 4.93
408 410 2.040412 AGGGATGGAGTTTTTCTCGCTT 59.960 45.455 0.00 0.00 43.60 4.68
409 411 2.820197 GGGATGGAGTTTTTCTCGCTTT 59.180 45.455 0.00 0.00 43.60 3.51
410 412 3.255888 GGGATGGAGTTTTTCTCGCTTTT 59.744 43.478 0.00 0.00 43.60 2.27
411 413 4.229876 GGATGGAGTTTTTCTCGCTTTTG 58.770 43.478 0.00 0.00 43.60 2.44
412 414 3.708563 TGGAGTTTTTCTCGCTTTTGG 57.291 42.857 0.00 0.00 43.60 3.28
413 415 3.020984 TGGAGTTTTTCTCGCTTTTGGT 58.979 40.909 0.00 0.00 43.60 3.67
414 416 3.181491 TGGAGTTTTTCTCGCTTTTGGTG 60.181 43.478 0.00 0.00 43.60 4.17
415 417 3.181490 GGAGTTTTTCTCGCTTTTGGTGT 60.181 43.478 0.00 0.00 43.60 4.16
416 418 4.035909 GGAGTTTTTCTCGCTTTTGGTGTA 59.964 41.667 0.00 0.00 43.60 2.90
417 419 5.169836 AGTTTTTCTCGCTTTTGGTGTAG 57.830 39.130 0.00 0.00 0.00 2.74
418 420 3.619233 TTTTCTCGCTTTTGGTGTAGC 57.381 42.857 0.00 0.00 0.00 3.58
419 421 2.248280 TTCTCGCTTTTGGTGTAGCA 57.752 45.000 0.00 0.00 37.23 3.49
420 422 1.795768 TCTCGCTTTTGGTGTAGCAG 58.204 50.000 0.00 0.00 37.23 4.24
421 423 0.798776 CTCGCTTTTGGTGTAGCAGG 59.201 55.000 0.00 0.00 37.23 4.85
422 424 1.210155 CGCTTTTGGTGTAGCAGGC 59.790 57.895 0.00 0.00 37.23 4.85
423 425 1.586541 GCTTTTGGTGTAGCAGGCC 59.413 57.895 0.00 0.00 37.35 5.19
424 426 0.895559 GCTTTTGGTGTAGCAGGCCT 60.896 55.000 0.00 0.00 37.35 5.19
425 427 1.168714 CTTTTGGTGTAGCAGGCCTC 58.831 55.000 0.00 0.00 0.00 4.70
426 428 0.251165 TTTTGGTGTAGCAGGCCTCC 60.251 55.000 0.00 0.00 0.00 4.30
427 429 2.137177 TTTGGTGTAGCAGGCCTCCC 62.137 60.000 0.00 0.00 0.00 4.30
428 430 2.689034 GGTGTAGCAGGCCTCCCT 60.689 66.667 0.00 4.74 44.25 4.20
429 431 2.301738 GGTGTAGCAGGCCTCCCTT 61.302 63.158 0.00 0.00 40.33 3.95
430 432 1.685820 GTGTAGCAGGCCTCCCTTT 59.314 57.895 0.00 0.00 40.33 3.11
431 433 0.678048 GTGTAGCAGGCCTCCCTTTG 60.678 60.000 0.00 0.00 40.33 2.77
432 434 1.077429 GTAGCAGGCCTCCCTTTGG 60.077 63.158 0.00 0.00 40.33 3.28
433 435 2.308722 TAGCAGGCCTCCCTTTGGG 61.309 63.158 0.00 0.00 46.11 4.12
454 456 4.891727 CCCGCGCGACAGGCTATT 62.892 66.667 34.63 0.00 40.44 1.73
455 457 2.027024 CCGCGCGACAGGCTATTA 59.973 61.111 34.63 0.00 40.44 0.98
456 458 2.016704 CCGCGCGACAGGCTATTAG 61.017 63.158 34.63 5.49 40.44 1.73
457 459 2.649257 CGCGCGACAGGCTATTAGC 61.649 63.158 28.94 7.16 41.46 3.09
458 460 1.300233 GCGCGACAGGCTATTAGCT 60.300 57.895 12.10 0.00 41.99 3.32
459 461 1.278849 GCGCGACAGGCTATTAGCTC 61.279 60.000 12.10 4.73 41.99 4.09
460 462 0.030773 CGCGACAGGCTATTAGCTCA 59.969 55.000 15.02 0.00 41.99 4.26
461 463 1.777101 GCGACAGGCTATTAGCTCAG 58.223 55.000 15.02 8.01 41.99 3.35
462 464 1.067821 GCGACAGGCTATTAGCTCAGT 59.932 52.381 15.02 10.82 41.99 3.41
463 465 2.736978 CGACAGGCTATTAGCTCAGTG 58.263 52.381 15.02 9.99 41.99 3.66
464 466 2.544694 CGACAGGCTATTAGCTCAGTGG 60.545 54.545 15.02 8.81 41.99 4.00
465 467 2.432510 GACAGGCTATTAGCTCAGTGGT 59.567 50.000 15.02 5.22 41.99 4.16
466 468 3.637229 GACAGGCTATTAGCTCAGTGGTA 59.363 47.826 15.02 0.00 41.99 3.25
467 469 3.639094 ACAGGCTATTAGCTCAGTGGTAG 59.361 47.826 15.02 0.00 41.99 3.18
468 470 3.891977 CAGGCTATTAGCTCAGTGGTAGA 59.108 47.826 15.02 0.00 41.99 2.59
469 471 4.022416 CAGGCTATTAGCTCAGTGGTAGAG 60.022 50.000 15.02 0.00 41.99 2.43
474 476 2.580867 CTCAGTGGTAGAGCGCGC 60.581 66.667 26.66 26.66 0.00 6.86
475 477 4.129737 TCAGTGGTAGAGCGCGCC 62.130 66.667 30.33 19.60 0.00 6.53
481 483 3.917760 GTAGAGCGCGCCCCTGAT 61.918 66.667 30.33 8.00 0.00 2.90
482 484 2.203437 TAGAGCGCGCCCCTGATA 60.203 61.111 30.33 7.73 0.00 2.15
483 485 1.830847 TAGAGCGCGCCCCTGATAA 60.831 57.895 30.33 7.34 0.00 1.75
484 486 1.185618 TAGAGCGCGCCCCTGATAAT 61.186 55.000 30.33 5.17 0.00 1.28
485 487 1.598130 GAGCGCGCCCCTGATAATT 60.598 57.895 30.33 4.23 0.00 1.40
486 488 1.845809 GAGCGCGCCCCTGATAATTG 61.846 60.000 30.33 0.00 0.00 2.32
487 489 2.639286 CGCGCCCCTGATAATTGC 59.361 61.111 0.00 0.00 0.00 3.56
489 491 2.186826 GCGCCCCTGATAATTGCGT 61.187 57.895 0.00 0.00 46.39 5.24
490 492 1.941812 CGCCCCTGATAATTGCGTC 59.058 57.895 0.00 0.00 40.33 5.19
491 493 1.831389 CGCCCCTGATAATTGCGTCG 61.831 60.000 0.00 0.00 40.33 5.12
492 494 0.814010 GCCCCTGATAATTGCGTCGT 60.814 55.000 0.00 0.00 0.00 4.34
493 495 1.663695 CCCCTGATAATTGCGTCGTT 58.336 50.000 0.00 0.00 0.00 3.85
494 496 1.330521 CCCCTGATAATTGCGTCGTTG 59.669 52.381 0.00 0.00 0.00 4.10
495 497 2.006888 CCCTGATAATTGCGTCGTTGT 58.993 47.619 0.00 0.00 0.00 3.32
496 498 2.223021 CCCTGATAATTGCGTCGTTGTG 60.223 50.000 0.00 0.00 0.00 3.33
497 499 2.430956 CTGATAATTGCGTCGTTGTGC 58.569 47.619 0.00 0.00 0.00 4.57
498 500 1.129624 TGATAATTGCGTCGTTGTGCC 59.870 47.619 0.00 0.00 0.00 5.01
499 501 1.396996 GATAATTGCGTCGTTGTGCCT 59.603 47.619 0.00 0.00 0.00 4.75
500 502 0.515127 TAATTGCGTCGTTGTGCCTG 59.485 50.000 0.00 0.00 0.00 4.85
501 503 2.128853 AATTGCGTCGTTGTGCCTGG 62.129 55.000 0.00 0.00 0.00 4.45
504 506 4.988598 CGTCGTTGTGCCTGGGCT 62.989 66.667 13.05 0.00 42.51 5.19
505 507 3.357079 GTCGTTGTGCCTGGGCTG 61.357 66.667 13.05 0.00 42.51 4.85
506 508 3.872603 TCGTTGTGCCTGGGCTGT 61.873 61.111 13.05 0.00 42.51 4.40
507 509 3.663176 CGTTGTGCCTGGGCTGTG 61.663 66.667 13.05 0.00 42.51 3.66
508 510 2.203337 GTTGTGCCTGGGCTGTGA 60.203 61.111 13.05 0.00 42.51 3.58
509 511 2.113774 TTGTGCCTGGGCTGTGAG 59.886 61.111 13.05 0.00 42.51 3.51
510 512 3.496309 TTGTGCCTGGGCTGTGAGG 62.496 63.158 13.05 0.00 42.51 3.86
511 513 4.729918 GTGCCTGGGCTGTGAGGG 62.730 72.222 13.05 0.00 42.51 4.30
514 516 4.106925 CCTGGGCTGTGAGGGCTC 62.107 72.222 0.00 0.00 0.00 4.70
515 517 3.007920 CTGGGCTGTGAGGGCTCT 61.008 66.667 0.00 0.00 0.00 4.09
516 518 3.005539 TGGGCTGTGAGGGCTCTC 61.006 66.667 6.66 6.66 40.36 3.20
517 519 3.005539 GGGCTGTGAGGGCTCTCA 61.006 66.667 13.72 13.72 46.81 3.27
530 532 2.166821 GCTCTCAGCCACATGGATAG 57.833 55.000 0.87 0.00 34.48 2.08
531 533 1.415659 GCTCTCAGCCACATGGATAGT 59.584 52.381 0.87 0.00 34.48 2.12
532 534 2.158842 GCTCTCAGCCACATGGATAGTT 60.159 50.000 0.87 0.00 34.48 2.24
533 535 3.726607 CTCTCAGCCACATGGATAGTTC 58.273 50.000 0.87 0.00 37.39 3.01
534 536 3.106827 TCTCAGCCACATGGATAGTTCA 58.893 45.455 0.87 0.00 37.39 3.18
535 537 3.519107 TCTCAGCCACATGGATAGTTCAA 59.481 43.478 0.87 0.00 37.39 2.69
536 538 4.164796 TCTCAGCCACATGGATAGTTCAAT 59.835 41.667 0.87 0.00 37.39 2.57
537 539 4.201657 TCAGCCACATGGATAGTTCAATG 58.798 43.478 0.87 0.00 38.97 2.82
538 540 3.949754 CAGCCACATGGATAGTTCAATGT 59.050 43.478 0.87 0.00 45.67 2.71
543 545 4.847198 ACATGGATAGTTCAATGTGCTCA 58.153 39.130 0.00 0.00 43.56 4.26
544 546 5.443283 ACATGGATAGTTCAATGTGCTCAT 58.557 37.500 0.00 0.00 43.56 2.90
545 547 5.530171 ACATGGATAGTTCAATGTGCTCATC 59.470 40.000 1.01 0.00 43.56 2.92
546 548 5.101648 TGGATAGTTCAATGTGCTCATCA 57.898 39.130 1.01 0.00 32.56 3.07
547 549 5.121105 TGGATAGTTCAATGTGCTCATCAG 58.879 41.667 1.01 0.00 32.56 2.90
548 550 4.514441 GGATAGTTCAATGTGCTCATCAGG 59.486 45.833 1.01 0.00 32.56 3.86
549 551 2.719739 AGTTCAATGTGCTCATCAGGG 58.280 47.619 1.01 0.00 32.56 4.45
550 552 1.133790 GTTCAATGTGCTCATCAGGGC 59.866 52.381 1.01 0.00 32.56 5.19
551 553 0.394762 TCAATGTGCTCATCAGGGCC 60.395 55.000 1.01 0.00 32.56 5.80
552 554 0.395311 CAATGTGCTCATCAGGGCCT 60.395 55.000 0.00 0.00 32.56 5.19
553 555 0.395311 AATGTGCTCATCAGGGCCTG 60.395 55.000 28.01 28.01 32.56 4.85
554 556 1.276859 ATGTGCTCATCAGGGCCTGA 61.277 55.000 36.61 36.61 44.99 3.86
555 557 1.451028 GTGCTCATCAGGGCCTGAC 60.451 63.158 37.24 24.41 43.63 3.51
556 558 2.191641 GCTCATCAGGGCCTGACC 59.808 66.667 37.24 21.32 43.63 4.02
565 567 2.990479 GGCCTGACCCGAAGATGT 59.010 61.111 0.00 0.00 0.00 3.06
566 568 1.450312 GGCCTGACCCGAAGATGTG 60.450 63.158 0.00 0.00 0.00 3.21
567 569 1.450312 GCCTGACCCGAAGATGTGG 60.450 63.158 0.00 0.00 0.00 4.17
568 570 1.899437 GCCTGACCCGAAGATGTGGA 61.899 60.000 0.00 0.00 0.00 4.02
569 571 0.833287 CCTGACCCGAAGATGTGGAT 59.167 55.000 0.00 0.00 0.00 3.41
570 572 1.202580 CCTGACCCGAAGATGTGGATC 60.203 57.143 0.00 0.00 0.00 3.36
571 573 1.482182 CTGACCCGAAGATGTGGATCA 59.518 52.381 0.00 0.00 0.00 2.92
572 574 2.103771 CTGACCCGAAGATGTGGATCAT 59.896 50.000 0.00 0.00 39.77 2.45
584 586 2.832643 TGGATCATCCAAGGCACATT 57.167 45.000 2.95 0.00 45.00 2.71
585 587 3.949586 TGGATCATCCAAGGCACATTA 57.050 42.857 2.95 0.00 45.00 1.90
586 588 3.824133 TGGATCATCCAAGGCACATTAG 58.176 45.455 2.95 0.00 45.00 1.73
587 589 2.555757 GGATCATCCAAGGCACATTAGC 59.444 50.000 0.00 0.00 36.28 3.09
588 590 2.804986 TCATCCAAGGCACATTAGCA 57.195 45.000 0.00 0.00 35.83 3.49
589 591 3.301794 TCATCCAAGGCACATTAGCAT 57.698 42.857 0.00 0.00 35.83 3.79
590 592 2.953648 TCATCCAAGGCACATTAGCATG 59.046 45.455 0.00 0.00 35.83 4.06
591 593 1.766494 TCCAAGGCACATTAGCATGG 58.234 50.000 0.00 0.00 41.61 3.66
592 594 0.103572 CCAAGGCACATTAGCATGGC 59.896 55.000 0.00 0.00 41.52 4.40
593 595 0.248743 CAAGGCACATTAGCATGGCG 60.249 55.000 0.00 0.00 45.57 5.69
594 596 0.680921 AAGGCACATTAGCATGGCGT 60.681 50.000 0.00 0.00 45.57 5.68
595 597 0.180171 AGGCACATTAGCATGGCGTA 59.820 50.000 0.00 0.00 45.57 4.42
596 598 0.307760 GGCACATTAGCATGGCGTAC 59.692 55.000 0.00 0.00 34.27 3.67
597 599 1.299541 GCACATTAGCATGGCGTACT 58.700 50.000 0.00 0.00 34.27 2.73
598 600 1.261619 GCACATTAGCATGGCGTACTC 59.738 52.381 0.00 0.00 34.27 2.59
599 601 1.867233 CACATTAGCATGGCGTACTCC 59.133 52.381 0.00 0.00 34.27 3.85
600 602 1.762957 ACATTAGCATGGCGTACTCCT 59.237 47.619 3.08 0.00 34.27 3.69
601 603 2.224066 ACATTAGCATGGCGTACTCCTC 60.224 50.000 3.08 0.00 34.27 3.71
602 604 0.750850 TTAGCATGGCGTACTCCTCC 59.249 55.000 3.08 0.00 0.00 4.30
603 605 0.106167 TAGCATGGCGTACTCCTCCT 60.106 55.000 3.08 0.00 0.00 3.69
604 606 1.227380 GCATGGCGTACTCCTCCTG 60.227 63.158 3.08 0.00 0.00 3.86
605 607 1.961180 GCATGGCGTACTCCTCCTGT 61.961 60.000 3.08 0.00 0.00 4.00
606 608 0.537188 CATGGCGTACTCCTCCTGTT 59.463 55.000 3.08 0.00 0.00 3.16
607 609 1.066143 CATGGCGTACTCCTCCTGTTT 60.066 52.381 3.08 0.00 0.00 2.83
608 610 0.320374 TGGCGTACTCCTCCTGTTTG 59.680 55.000 3.08 0.00 0.00 2.93
609 611 0.606604 GGCGTACTCCTCCTGTTTGA 59.393 55.000 0.00 0.00 0.00 2.69
610 612 1.672145 GGCGTACTCCTCCTGTTTGAC 60.672 57.143 0.00 0.00 0.00 3.18
611 613 1.272769 GCGTACTCCTCCTGTTTGACT 59.727 52.381 0.00 0.00 0.00 3.41
612 614 2.671632 GCGTACTCCTCCTGTTTGACTC 60.672 54.545 0.00 0.00 0.00 3.36
613 615 2.414293 CGTACTCCTCCTGTTTGACTCG 60.414 54.545 0.00 0.00 0.00 4.18
614 616 0.969894 ACTCCTCCTGTTTGACTCGG 59.030 55.000 0.00 0.00 0.00 4.63
615 617 1.257743 CTCCTCCTGTTTGACTCGGA 58.742 55.000 0.00 0.00 0.00 4.55
616 618 1.203523 CTCCTCCTGTTTGACTCGGAG 59.796 57.143 2.83 2.83 42.09 4.63
617 619 0.969894 CCTCCTGTTTGACTCGGAGT 59.030 55.000 11.09 11.09 41.11 3.85
618 620 1.344763 CCTCCTGTTTGACTCGGAGTT 59.655 52.381 12.67 0.00 41.11 3.01
619 621 2.224305 CCTCCTGTTTGACTCGGAGTTT 60.224 50.000 12.67 0.00 41.11 2.66
620 622 2.802816 CTCCTGTTTGACTCGGAGTTTG 59.197 50.000 12.67 0.02 38.54 2.93
621 623 2.432874 TCCTGTTTGACTCGGAGTTTGA 59.567 45.455 12.67 0.00 0.00 2.69
622 624 3.118555 TCCTGTTTGACTCGGAGTTTGAA 60.119 43.478 12.67 5.06 0.00 2.69
623 625 3.625764 CCTGTTTGACTCGGAGTTTGAAA 59.374 43.478 12.67 9.05 0.00 2.69
624 626 4.495844 CCTGTTTGACTCGGAGTTTGAAAC 60.496 45.833 21.99 21.99 0.00 2.78
625 627 3.375922 TGTTTGACTCGGAGTTTGAAACC 59.624 43.478 23.87 9.87 28.93 3.27
626 628 2.992124 TGACTCGGAGTTTGAAACCA 57.008 45.000 12.67 0.66 0.00 3.67
627 629 3.269538 TGACTCGGAGTTTGAAACCAA 57.730 42.857 12.67 0.00 0.00 3.67
628 630 3.611970 TGACTCGGAGTTTGAAACCAAA 58.388 40.909 12.67 0.00 0.00 3.28
643 645 8.980143 TTGAAACCAAACAAACTTCTTCTTAG 57.020 30.769 0.00 0.00 0.00 2.18
644 646 7.543756 TGAAACCAAACAAACTTCTTCTTAGG 58.456 34.615 0.00 0.00 0.00 2.69
645 647 7.394923 TGAAACCAAACAAACTTCTTCTTAGGA 59.605 33.333 0.00 0.00 0.00 2.94
646 648 6.944234 ACCAAACAAACTTCTTCTTAGGAG 57.056 37.500 0.00 0.00 32.76 3.69
647 649 5.828328 ACCAAACAAACTTCTTCTTAGGAGG 59.172 40.000 0.00 0.00 30.50 4.30
648 650 6.062095 CCAAACAAACTTCTTCTTAGGAGGA 58.938 40.000 0.00 0.00 30.50 3.71
649 651 6.717084 CCAAACAAACTTCTTCTTAGGAGGAT 59.283 38.462 0.00 0.00 30.50 3.24
650 652 7.883311 CCAAACAAACTTCTTCTTAGGAGGATA 59.117 37.037 0.00 0.00 30.50 2.59
651 653 8.940952 CAAACAAACTTCTTCTTAGGAGGATAG 58.059 37.037 0.00 0.00 30.50 2.08
652 654 8.437274 AACAAACTTCTTCTTAGGAGGATAGA 57.563 34.615 0.00 0.00 30.50 1.98
653 655 8.616799 ACAAACTTCTTCTTAGGAGGATAGAT 57.383 34.615 0.00 0.00 30.50 1.98
654 656 8.482128 ACAAACTTCTTCTTAGGAGGATAGATG 58.518 37.037 0.00 0.00 30.50 2.90
655 657 7.610580 AACTTCTTCTTAGGAGGATAGATGG 57.389 40.000 0.00 0.00 30.50 3.51
656 658 6.081356 ACTTCTTCTTAGGAGGATAGATGGG 58.919 44.000 0.00 0.00 30.50 4.00
657 659 5.017093 TCTTCTTAGGAGGATAGATGGGG 57.983 47.826 0.00 0.00 0.00 4.96
658 660 3.191888 TCTTAGGAGGATAGATGGGGC 57.808 52.381 0.00 0.00 0.00 5.80
659 661 1.827969 CTTAGGAGGATAGATGGGGCG 59.172 57.143 0.00 0.00 0.00 6.13
660 662 1.081481 TAGGAGGATAGATGGGGCGA 58.919 55.000 0.00 0.00 0.00 5.54
661 663 0.415429 AGGAGGATAGATGGGGCGAT 59.585 55.000 0.00 0.00 0.00 4.58
662 664 1.203364 AGGAGGATAGATGGGGCGATT 60.203 52.381 0.00 0.00 0.00 3.34
663 665 1.208293 GGAGGATAGATGGGGCGATTC 59.792 57.143 0.00 0.00 0.00 2.52
664 666 1.902508 GAGGATAGATGGGGCGATTCA 59.097 52.381 0.00 0.00 0.00 2.57
665 667 2.503356 GAGGATAGATGGGGCGATTCAT 59.497 50.000 0.00 0.00 0.00 2.57
666 668 2.238144 AGGATAGATGGGGCGATTCATG 59.762 50.000 0.00 0.00 0.00 3.07
667 669 2.026822 GGATAGATGGGGCGATTCATGT 60.027 50.000 0.00 0.00 0.00 3.21
668 670 2.549064 TAGATGGGGCGATTCATGTG 57.451 50.000 0.00 0.00 0.00 3.21
669 671 0.839277 AGATGGGGCGATTCATGTGA 59.161 50.000 0.00 0.00 0.00 3.58
670 672 1.202734 AGATGGGGCGATTCATGTGAG 60.203 52.381 0.00 0.00 0.00 3.51
671 673 0.839277 ATGGGGCGATTCATGTGAGA 59.161 50.000 0.00 0.00 0.00 3.27
672 674 0.839277 TGGGGCGATTCATGTGAGAT 59.161 50.000 0.00 0.00 0.00 2.75
673 675 1.202687 TGGGGCGATTCATGTGAGATC 60.203 52.381 0.00 0.00 0.00 2.75
674 676 1.517242 GGGCGATTCATGTGAGATCC 58.483 55.000 0.00 0.00 0.00 3.36
675 677 1.517242 GGCGATTCATGTGAGATCCC 58.483 55.000 0.00 0.00 0.00 3.85
676 678 1.202687 GGCGATTCATGTGAGATCCCA 60.203 52.381 0.00 0.00 0.00 4.37
677 679 2.551721 GGCGATTCATGTGAGATCCCAT 60.552 50.000 0.00 0.00 0.00 4.00
678 680 2.483106 GCGATTCATGTGAGATCCCATG 59.517 50.000 10.03 10.03 39.82 3.66
679 681 3.736720 CGATTCATGTGAGATCCCATGT 58.263 45.455 14.00 1.01 39.53 3.21
680 682 4.800582 GCGATTCATGTGAGATCCCATGTA 60.801 45.833 14.00 7.91 39.53 2.29
681 683 4.928020 CGATTCATGTGAGATCCCATGTAG 59.072 45.833 14.00 4.82 39.53 2.74
682 684 5.279156 CGATTCATGTGAGATCCCATGTAGA 60.279 44.000 14.00 0.00 39.53 2.59
683 685 6.573876 CGATTCATGTGAGATCCCATGTAGAT 60.574 42.308 14.00 0.00 39.53 1.98
684 686 5.735285 TCATGTGAGATCCCATGTAGATC 57.265 43.478 12.80 12.80 39.53 2.75
695 697 9.836179 AGATCCCATGTAGATCTAACTTTCTAT 57.164 33.333 18.99 0.00 46.76 1.98
698 700 9.434275 TCCCATGTAGATCTAACTTTCTATTCA 57.566 33.333 3.40 0.00 0.00 2.57
699 701 9.482627 CCCATGTAGATCTAACTTTCTATTCAC 57.517 37.037 3.40 0.00 0.00 3.18
703 705 9.175312 TGTAGATCTAACTTTCTATTCACTCGT 57.825 33.333 3.40 0.00 0.00 4.18
704 706 9.440784 GTAGATCTAACTTTCTATTCACTCGTG 57.559 37.037 3.40 0.00 0.00 4.35
705 707 7.484975 AGATCTAACTTTCTATTCACTCGTGG 58.515 38.462 0.00 0.00 0.00 4.94
706 708 5.962433 TCTAACTTTCTATTCACTCGTGGG 58.038 41.667 0.00 0.00 0.00 4.61
707 709 4.884668 AACTTTCTATTCACTCGTGGGA 57.115 40.909 0.00 0.00 0.00 4.37
708 710 5.422214 AACTTTCTATTCACTCGTGGGAT 57.578 39.130 0.00 0.00 0.00 3.85
709 711 5.012328 ACTTTCTATTCACTCGTGGGATC 57.988 43.478 0.00 0.00 0.00 3.36
710 712 4.141914 ACTTTCTATTCACTCGTGGGATCC 60.142 45.833 1.92 1.92 0.00 3.36
711 713 1.954382 TCTATTCACTCGTGGGATCCG 59.046 52.381 5.45 0.00 0.00 4.18
712 714 1.000163 CTATTCACTCGTGGGATCCGG 60.000 57.143 5.45 0.00 0.00 5.14
713 715 1.686325 ATTCACTCGTGGGATCCGGG 61.686 60.000 5.45 0.00 0.00 5.73
714 716 3.075005 CACTCGTGGGATCCGGGT 61.075 66.667 5.45 0.00 40.23 5.28
715 717 3.075005 ACTCGTGGGATCCGGGTG 61.075 66.667 5.45 1.00 37.69 4.61
716 718 3.849951 CTCGTGGGATCCGGGTGG 61.850 72.222 5.45 0.00 0.00 4.61
717 719 4.707768 TCGTGGGATCCGGGTGGT 62.708 66.667 5.45 0.00 36.30 4.16
718 720 4.157120 CGTGGGATCCGGGTGGTC 62.157 72.222 5.45 0.00 36.30 4.02
719 721 2.687566 GTGGGATCCGGGTGGTCT 60.688 66.667 5.45 0.00 36.30 3.85
720 722 2.687200 TGGGATCCGGGTGGTCTG 60.687 66.667 5.45 0.00 36.30 3.51
721 723 3.480133 GGGATCCGGGTGGTCTGG 61.480 72.222 5.45 0.00 43.43 3.86
722 724 3.480133 GGATCCGGGTGGTCTGGG 61.480 72.222 0.00 0.00 42.31 4.45
723 725 3.480133 GATCCGGGTGGTCTGGGG 61.480 72.222 0.00 0.00 42.31 4.96
1215 1217 2.158827 AGAGCTATCTCTCGAGCACAGA 60.159 50.000 7.81 6.14 46.32 3.41
2108 2110 1.815421 CTGCGTTCGGGAAGGATGG 60.815 63.158 5.38 0.00 0.00 3.51
2179 2181 3.864789 AGGGGCGATGATTTACTTCAT 57.135 42.857 0.00 0.00 39.04 2.57
2203 2205 1.889829 CGAGGTCTCTGGTTCAAGTCT 59.110 52.381 0.00 0.00 0.00 3.24
2220 2222 2.691996 TAGGATGGCCCAGCTGCA 60.692 61.111 8.66 0.81 37.41 4.41
2307 2311 4.221041 GGGGATATAGCTCAGTTGGTAGAC 59.779 50.000 0.00 0.00 0.00 2.59
2342 2346 1.153784 GGGTCGTTGCGATTACGGA 60.154 57.895 0.00 0.00 38.42 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.203052 CCGCCTCCTTACAGTTAACGA 59.797 52.381 0.00 0.00 0.00 3.85
42 43 3.195661 CATCCGCCTCCTTACAGTTAAC 58.804 50.000 0.00 0.00 0.00 2.01
217 218 6.544928 TCCATATCAAGTTTAGCTCAGACA 57.455 37.500 0.00 0.00 0.00 3.41
295 297 9.647797 ATCACTATCAACTAATTTGTTACGACA 57.352 29.630 4.94 0.00 36.49 4.35
358 360 4.820744 ATCCCCATGCCGCCACAC 62.821 66.667 0.00 0.00 0.00 3.82
359 361 4.818863 CATCCCCATGCCGCCACA 62.819 66.667 0.00 0.00 0.00 4.17
360 362 4.820744 ACATCCCCATGCCGCCAC 62.821 66.667 0.00 0.00 32.57 5.01
361 363 4.504596 GACATCCCCATGCCGCCA 62.505 66.667 0.00 0.00 32.57 5.69
362 364 4.504596 TGACATCCCCATGCCGCC 62.505 66.667 0.00 0.00 32.57 6.13
363 365 1.603236 TTTTGACATCCCCATGCCGC 61.603 55.000 0.00 0.00 32.57 6.53
364 366 0.457035 CTTTTGACATCCCCATGCCG 59.543 55.000 0.00 0.00 32.57 5.69
365 367 0.826062 CCTTTTGACATCCCCATGCC 59.174 55.000 0.00 0.00 32.57 4.40
366 368 1.851304 TCCTTTTGACATCCCCATGC 58.149 50.000 0.00 0.00 32.57 4.06
367 369 3.196254 CCTTTCCTTTTGACATCCCCATG 59.804 47.826 0.00 0.00 35.92 3.66
368 370 3.444029 CCTTTCCTTTTGACATCCCCAT 58.556 45.455 0.00 0.00 0.00 4.00
369 371 2.492567 CCCTTTCCTTTTGACATCCCCA 60.493 50.000 0.00 0.00 0.00 4.96
370 372 2.179427 CCCTTTCCTTTTGACATCCCC 58.821 52.381 0.00 0.00 0.00 4.81
371 373 3.169512 TCCCTTTCCTTTTGACATCCC 57.830 47.619 0.00 0.00 0.00 3.85
372 374 3.448660 CCATCCCTTTCCTTTTGACATCC 59.551 47.826 0.00 0.00 0.00 3.51
373 375 4.344104 TCCATCCCTTTCCTTTTGACATC 58.656 43.478 0.00 0.00 0.00 3.06
374 376 4.202716 ACTCCATCCCTTTCCTTTTGACAT 60.203 41.667 0.00 0.00 0.00 3.06
375 377 3.140144 ACTCCATCCCTTTCCTTTTGACA 59.860 43.478 0.00 0.00 0.00 3.58
376 378 3.767711 ACTCCATCCCTTTCCTTTTGAC 58.232 45.455 0.00 0.00 0.00 3.18
377 379 4.469469 AACTCCATCCCTTTCCTTTTGA 57.531 40.909 0.00 0.00 0.00 2.69
378 380 5.551305 AAAACTCCATCCCTTTCCTTTTG 57.449 39.130 0.00 0.00 0.00 2.44
379 381 5.905331 AGAAAAACTCCATCCCTTTCCTTTT 59.095 36.000 0.00 0.00 0.00 2.27
380 382 5.467738 AGAAAAACTCCATCCCTTTCCTTT 58.532 37.500 0.00 0.00 0.00 3.11
381 383 5.079998 AGAAAAACTCCATCCCTTTCCTT 57.920 39.130 0.00 0.00 0.00 3.36
382 384 4.667573 GAGAAAAACTCCATCCCTTTCCT 58.332 43.478 0.00 0.00 39.53 3.36
383 385 3.440522 CGAGAAAAACTCCATCCCTTTCC 59.559 47.826 0.00 0.00 42.18 3.13
384 386 3.119814 GCGAGAAAAACTCCATCCCTTTC 60.120 47.826 0.00 0.00 42.18 2.62
385 387 2.820197 GCGAGAAAAACTCCATCCCTTT 59.180 45.455 0.00 0.00 42.18 3.11
386 388 2.040412 AGCGAGAAAAACTCCATCCCTT 59.960 45.455 0.00 0.00 42.18 3.95
387 389 1.630878 AGCGAGAAAAACTCCATCCCT 59.369 47.619 0.00 0.00 42.18 4.20
388 390 2.115343 AGCGAGAAAAACTCCATCCC 57.885 50.000 0.00 0.00 42.18 3.85
389 391 4.229876 CAAAAGCGAGAAAAACTCCATCC 58.770 43.478 0.00 0.00 42.18 3.51
390 392 4.229876 CCAAAAGCGAGAAAAACTCCATC 58.770 43.478 0.00 0.00 42.18 3.51
391 393 3.636764 ACCAAAAGCGAGAAAAACTCCAT 59.363 39.130 0.00 0.00 42.18 3.41
392 394 3.020984 ACCAAAAGCGAGAAAAACTCCA 58.979 40.909 0.00 0.00 42.18 3.86
393 395 3.181490 ACACCAAAAGCGAGAAAAACTCC 60.181 43.478 0.00 0.00 42.18 3.85
394 396 4.028852 ACACCAAAAGCGAGAAAAACTC 57.971 40.909 0.00 0.00 41.79 3.01
395 397 4.497507 GCTACACCAAAAGCGAGAAAAACT 60.498 41.667 0.00 0.00 0.00 2.66
396 398 3.729217 GCTACACCAAAAGCGAGAAAAAC 59.271 43.478 0.00 0.00 0.00 2.43
397 399 3.378742 TGCTACACCAAAAGCGAGAAAAA 59.621 39.130 0.00 0.00 41.77 1.94
398 400 2.946329 TGCTACACCAAAAGCGAGAAAA 59.054 40.909 0.00 0.00 41.77 2.29
399 401 2.548057 CTGCTACACCAAAAGCGAGAAA 59.452 45.455 0.00 0.00 41.77 2.52
400 402 2.143122 CTGCTACACCAAAAGCGAGAA 58.857 47.619 0.00 0.00 41.77 2.87
401 403 1.608025 CCTGCTACACCAAAAGCGAGA 60.608 52.381 0.00 0.00 41.77 4.04
402 404 0.798776 CCTGCTACACCAAAAGCGAG 59.201 55.000 0.00 0.00 41.77 5.03
403 405 1.234615 GCCTGCTACACCAAAAGCGA 61.235 55.000 0.00 0.00 41.77 4.93
404 406 1.210155 GCCTGCTACACCAAAAGCG 59.790 57.895 0.00 0.00 41.77 4.68
405 407 0.895559 AGGCCTGCTACACCAAAAGC 60.896 55.000 3.11 0.00 39.25 3.51
406 408 1.168714 GAGGCCTGCTACACCAAAAG 58.831 55.000 12.00 0.00 0.00 2.27
407 409 0.251165 GGAGGCCTGCTACACCAAAA 60.251 55.000 18.47 0.00 0.00 2.44
408 410 1.378762 GGAGGCCTGCTACACCAAA 59.621 57.895 18.47 0.00 0.00 3.28
409 411 2.602676 GGGAGGCCTGCTACACCAA 61.603 63.158 24.77 0.00 0.00 3.67
410 412 3.009115 GGGAGGCCTGCTACACCA 61.009 66.667 24.77 0.00 0.00 4.17
411 413 1.853250 AAAGGGAGGCCTGCTACACC 61.853 60.000 24.77 10.97 0.00 4.16
412 414 0.678048 CAAAGGGAGGCCTGCTACAC 60.678 60.000 24.77 7.21 0.00 2.90
413 415 1.685224 CAAAGGGAGGCCTGCTACA 59.315 57.895 24.77 0.00 0.00 2.74
414 416 1.077429 CCAAAGGGAGGCCTGCTAC 60.077 63.158 24.77 8.42 35.59 3.58
415 417 3.415186 CCAAAGGGAGGCCTGCTA 58.585 61.111 24.77 0.00 35.59 3.49
437 439 3.493830 TAATAGCCTGTCGCGCGGG 62.494 63.158 31.69 24.08 46.58 6.13
438 440 2.016704 CTAATAGCCTGTCGCGCGG 61.017 63.158 31.69 15.17 44.76 6.46
439 441 2.649257 GCTAATAGCCTGTCGCGCG 61.649 63.158 26.76 26.76 44.76 6.86
440 442 1.278849 GAGCTAATAGCCTGTCGCGC 61.279 60.000 8.88 0.00 43.77 6.86
441 443 0.030773 TGAGCTAATAGCCTGTCGCG 59.969 55.000 8.88 0.00 43.77 5.87
442 444 1.067821 ACTGAGCTAATAGCCTGTCGC 59.932 52.381 8.88 0.00 43.77 5.19
443 445 2.544694 CCACTGAGCTAATAGCCTGTCG 60.545 54.545 8.88 0.76 43.77 4.35
444 446 2.432510 ACCACTGAGCTAATAGCCTGTC 59.567 50.000 8.88 0.81 43.77 3.51
445 447 2.472029 ACCACTGAGCTAATAGCCTGT 58.528 47.619 8.88 7.84 43.77 4.00
446 448 3.891977 TCTACCACTGAGCTAATAGCCTG 59.108 47.826 8.88 7.25 43.77 4.85
447 449 4.148838 CTCTACCACTGAGCTAATAGCCT 58.851 47.826 8.88 0.00 43.77 4.58
448 450 4.513198 CTCTACCACTGAGCTAATAGCC 57.487 50.000 8.88 1.34 43.77 3.93
457 459 2.580867 GCGCGCTCTACCACTGAG 60.581 66.667 26.67 0.00 34.87 3.35
458 460 4.129737 GGCGCGCTCTACCACTGA 62.130 66.667 32.29 0.00 0.00 3.41
464 466 2.083835 TTATCAGGGGCGCGCTCTAC 62.084 60.000 32.56 15.83 0.00 2.59
465 467 1.185618 ATTATCAGGGGCGCGCTCTA 61.186 55.000 32.56 17.34 0.00 2.43
466 468 2.044806 AATTATCAGGGGCGCGCTCT 62.045 55.000 32.56 24.61 0.00 4.09
467 469 1.598130 AATTATCAGGGGCGCGCTC 60.598 57.895 32.29 29.46 0.00 5.03
468 470 1.893808 CAATTATCAGGGGCGCGCT 60.894 57.895 32.29 12.78 0.00 5.92
469 471 2.639286 CAATTATCAGGGGCGCGC 59.361 61.111 25.94 25.94 0.00 6.86
470 472 2.639286 GCAATTATCAGGGGCGCG 59.361 61.111 0.00 0.00 0.00 6.86
471 473 2.639286 CGCAATTATCAGGGGCGC 59.361 61.111 0.00 0.00 41.27 6.53
473 475 0.814010 ACGACGCAATTATCAGGGGC 60.814 55.000 0.00 0.00 0.00 5.80
474 476 1.330521 CAACGACGCAATTATCAGGGG 59.669 52.381 0.00 0.00 0.00 4.79
475 477 2.006888 ACAACGACGCAATTATCAGGG 58.993 47.619 0.00 0.00 0.00 4.45
476 478 2.787723 GCACAACGACGCAATTATCAGG 60.788 50.000 0.00 0.00 0.00 3.86
477 479 2.430956 GCACAACGACGCAATTATCAG 58.569 47.619 0.00 0.00 0.00 2.90
478 480 1.129624 GGCACAACGACGCAATTATCA 59.870 47.619 0.00 0.00 0.00 2.15
479 481 1.396996 AGGCACAACGACGCAATTATC 59.603 47.619 0.00 0.00 0.00 1.75
480 482 1.130373 CAGGCACAACGACGCAATTAT 59.870 47.619 0.00 0.00 0.00 1.28
481 483 0.515127 CAGGCACAACGACGCAATTA 59.485 50.000 0.00 0.00 0.00 1.40
482 484 1.282570 CAGGCACAACGACGCAATT 59.717 52.632 0.00 0.00 0.00 2.32
483 485 2.616330 CCAGGCACAACGACGCAAT 61.616 57.895 0.00 0.00 0.00 3.56
484 486 3.276091 CCAGGCACAACGACGCAA 61.276 61.111 0.00 0.00 0.00 4.85
487 489 4.988598 AGCCCAGGCACAACGACG 62.989 66.667 12.03 0.00 44.88 5.12
488 490 3.357079 CAGCCCAGGCACAACGAC 61.357 66.667 12.03 0.00 44.88 4.34
489 491 3.872603 ACAGCCCAGGCACAACGA 61.873 61.111 12.03 0.00 44.88 3.85
490 492 3.663176 CACAGCCCAGGCACAACG 61.663 66.667 12.03 0.00 44.88 4.10
491 493 2.203337 TCACAGCCCAGGCACAAC 60.203 61.111 12.03 0.00 44.88 3.32
492 494 2.113774 CTCACAGCCCAGGCACAA 59.886 61.111 12.03 0.00 44.88 3.33
493 495 3.957586 CCTCACAGCCCAGGCACA 61.958 66.667 12.03 0.00 44.88 4.57
494 496 4.729918 CCCTCACAGCCCAGGCAC 62.730 72.222 12.03 0.00 44.88 5.01
497 499 4.106925 GAGCCCTCACAGCCCAGG 62.107 72.222 0.00 0.00 0.00 4.45
498 500 3.007920 AGAGCCCTCACAGCCCAG 61.008 66.667 0.00 0.00 0.00 4.45
499 501 3.005539 GAGAGCCCTCACAGCCCA 61.006 66.667 0.00 0.00 39.24 5.36
500 502 3.005539 TGAGAGCCCTCACAGCCC 61.006 66.667 0.00 0.00 44.01 5.19
501 503 2.583520 CTGAGAGCCCTCACAGCC 59.416 66.667 9.26 0.00 44.01 4.85
511 513 1.415659 ACTATCCATGTGGCTGAGAGC 59.584 52.381 0.00 0.00 41.46 4.09
512 514 3.133542 TGAACTATCCATGTGGCTGAGAG 59.866 47.826 0.00 0.00 34.44 3.20
513 515 3.106827 TGAACTATCCATGTGGCTGAGA 58.893 45.455 0.00 0.00 34.44 3.27
514 516 3.548745 TGAACTATCCATGTGGCTGAG 57.451 47.619 0.00 0.00 34.44 3.35
515 517 3.998913 TTGAACTATCCATGTGGCTGA 57.001 42.857 0.00 0.00 34.44 4.26
516 518 3.949754 ACATTGAACTATCCATGTGGCTG 59.050 43.478 0.00 0.00 39.67 4.85
517 519 4.240881 ACATTGAACTATCCATGTGGCT 57.759 40.909 0.00 0.00 39.67 4.75
521 523 4.847198 TGAGCACATTGAACTATCCATGT 58.153 39.130 0.00 0.00 41.28 3.21
522 524 5.529800 TGATGAGCACATTGAACTATCCATG 59.470 40.000 0.00 0.00 36.82 3.66
523 525 5.687780 TGATGAGCACATTGAACTATCCAT 58.312 37.500 0.00 0.00 36.82 3.41
524 526 5.101648 TGATGAGCACATTGAACTATCCA 57.898 39.130 0.00 0.00 36.82 3.41
525 527 4.514441 CCTGATGAGCACATTGAACTATCC 59.486 45.833 0.00 0.00 36.82 2.59
526 528 4.514441 CCCTGATGAGCACATTGAACTATC 59.486 45.833 0.00 0.00 36.82 2.08
527 529 4.458397 CCCTGATGAGCACATTGAACTAT 58.542 43.478 0.00 0.00 36.82 2.12
528 530 3.877559 CCCTGATGAGCACATTGAACTA 58.122 45.455 0.00 0.00 36.82 2.24
529 531 2.719739 CCCTGATGAGCACATTGAACT 58.280 47.619 0.00 0.00 36.82 3.01
530 532 1.133790 GCCCTGATGAGCACATTGAAC 59.866 52.381 0.00 0.00 36.82 3.18
531 533 1.466856 GCCCTGATGAGCACATTGAA 58.533 50.000 0.00 0.00 36.82 2.69
532 534 0.394762 GGCCCTGATGAGCACATTGA 60.395 55.000 0.00 0.00 36.82 2.57
533 535 0.395311 AGGCCCTGATGAGCACATTG 60.395 55.000 0.00 0.00 36.82 2.82
534 536 0.395311 CAGGCCCTGATGAGCACATT 60.395 55.000 4.15 0.00 36.82 2.71
535 537 1.226542 CAGGCCCTGATGAGCACAT 59.773 57.895 4.15 0.00 39.67 3.21
536 538 1.919816 TCAGGCCCTGATGAGCACA 60.920 57.895 10.05 0.00 35.39 4.57
537 539 1.451028 GTCAGGCCCTGATGAGCAC 60.451 63.158 18.16 0.00 42.73 4.40
538 540 2.673200 GGTCAGGCCCTGATGAGCA 61.673 63.158 18.16 0.00 42.73 4.26
539 541 2.191641 GGTCAGGCCCTGATGAGC 59.808 66.667 18.16 3.40 42.73 4.26
548 550 1.450312 CACATCTTCGGGTCAGGCC 60.450 63.158 0.00 0.00 0.00 5.19
549 551 1.450312 CCACATCTTCGGGTCAGGC 60.450 63.158 0.00 0.00 0.00 4.85
550 552 0.833287 ATCCACATCTTCGGGTCAGG 59.167 55.000 0.00 0.00 0.00 3.86
551 553 1.482182 TGATCCACATCTTCGGGTCAG 59.518 52.381 0.00 0.00 37.50 3.51
552 554 1.567357 TGATCCACATCTTCGGGTCA 58.433 50.000 0.00 0.00 40.17 4.02
553 555 2.918712 ATGATCCACATCTTCGGGTC 57.081 50.000 0.00 0.00 33.46 4.46
565 567 2.832643 AATGTGCCTTGGATGATCCA 57.167 45.000 10.75 10.75 46.61 3.41
566 568 2.555757 GCTAATGTGCCTTGGATGATCC 59.444 50.000 4.05 4.05 36.96 3.36
567 569 3.216800 TGCTAATGTGCCTTGGATGATC 58.783 45.455 0.00 0.00 0.00 2.92
568 570 3.301794 TGCTAATGTGCCTTGGATGAT 57.698 42.857 0.00 0.00 0.00 2.45
569 571 2.804986 TGCTAATGTGCCTTGGATGA 57.195 45.000 0.00 0.00 0.00 2.92
570 572 2.035449 CCATGCTAATGTGCCTTGGATG 59.965 50.000 0.00 0.00 37.39 3.51
571 573 2.313317 CCATGCTAATGTGCCTTGGAT 58.687 47.619 0.00 0.00 37.39 3.41
572 574 1.766494 CCATGCTAATGTGCCTTGGA 58.234 50.000 0.00 0.00 37.39 3.53
573 575 0.103572 GCCATGCTAATGTGCCTTGG 59.896 55.000 0.00 0.00 37.90 3.61
574 576 0.248743 CGCCATGCTAATGTGCCTTG 60.249 55.000 0.00 0.00 31.27 3.61
575 577 0.680921 ACGCCATGCTAATGTGCCTT 60.681 50.000 0.00 0.00 31.27 4.35
576 578 0.180171 TACGCCATGCTAATGTGCCT 59.820 50.000 0.00 0.00 31.27 4.75
577 579 0.307760 GTACGCCATGCTAATGTGCC 59.692 55.000 0.00 0.00 31.27 5.01
578 580 1.261619 GAGTACGCCATGCTAATGTGC 59.738 52.381 0.00 0.00 31.27 4.57
579 581 1.867233 GGAGTACGCCATGCTAATGTG 59.133 52.381 11.20 0.00 31.27 3.21
580 582 1.762957 AGGAGTACGCCATGCTAATGT 59.237 47.619 18.53 0.00 31.27 2.71
581 583 2.408050 GAGGAGTACGCCATGCTAATG 58.592 52.381 18.53 0.00 0.00 1.90
582 584 1.344763 GGAGGAGTACGCCATGCTAAT 59.655 52.381 18.53 0.00 39.13 1.73
583 585 0.750850 GGAGGAGTACGCCATGCTAA 59.249 55.000 18.53 0.00 39.13 3.09
584 586 0.106167 AGGAGGAGTACGCCATGCTA 60.106 55.000 18.53 0.00 42.23 3.49
585 587 1.381872 AGGAGGAGTACGCCATGCT 60.382 57.895 18.53 10.33 42.23 3.79
586 588 1.227380 CAGGAGGAGTACGCCATGC 60.227 63.158 18.53 8.25 42.23 4.06
587 589 0.537188 AACAGGAGGAGTACGCCATG 59.463 55.000 18.53 14.73 42.23 3.66
588 590 1.066143 CAAACAGGAGGAGTACGCCAT 60.066 52.381 18.53 2.87 42.23 4.40
589 591 0.320374 CAAACAGGAGGAGTACGCCA 59.680 55.000 18.53 0.00 42.23 5.69
590 592 0.606604 TCAAACAGGAGGAGTACGCC 59.393 55.000 7.70 7.70 39.70 5.68
591 593 1.272769 AGTCAAACAGGAGGAGTACGC 59.727 52.381 0.00 0.00 0.00 4.42
592 594 2.414293 CGAGTCAAACAGGAGGAGTACG 60.414 54.545 0.00 0.00 0.00 3.67
593 595 2.094649 CCGAGTCAAACAGGAGGAGTAC 60.095 54.545 0.00 0.00 0.00 2.73
594 596 2.168496 CCGAGTCAAACAGGAGGAGTA 58.832 52.381 0.00 0.00 0.00 2.59
595 597 0.969894 CCGAGTCAAACAGGAGGAGT 59.030 55.000 0.00 0.00 0.00 3.85
596 598 1.203523 CTCCGAGTCAAACAGGAGGAG 59.796 57.143 11.47 0.00 44.78 3.69
597 599 1.257743 CTCCGAGTCAAACAGGAGGA 58.742 55.000 11.47 0.00 44.78 3.71
598 600 3.822607 CTCCGAGTCAAACAGGAGG 57.177 57.895 11.47 0.00 44.78 4.30
600 602 2.432874 TCAAACTCCGAGTCAAACAGGA 59.567 45.455 0.35 0.00 0.00 3.86
601 603 2.833794 TCAAACTCCGAGTCAAACAGG 58.166 47.619 0.35 0.00 0.00 4.00
602 604 4.495844 GGTTTCAAACTCCGAGTCAAACAG 60.496 45.833 21.13 5.07 0.00 3.16
603 605 3.375922 GGTTTCAAACTCCGAGTCAAACA 59.624 43.478 21.13 1.37 0.00 2.83
604 606 3.375922 TGGTTTCAAACTCCGAGTCAAAC 59.624 43.478 15.87 15.87 0.00 2.93
605 607 3.611970 TGGTTTCAAACTCCGAGTCAAA 58.388 40.909 0.35 0.00 0.00 2.69
606 608 3.269538 TGGTTTCAAACTCCGAGTCAA 57.730 42.857 0.35 0.00 0.00 3.18
607 609 2.992124 TGGTTTCAAACTCCGAGTCA 57.008 45.000 0.35 0.00 0.00 3.41
617 619 9.418045 CTAAGAAGAAGTTTGTTTGGTTTCAAA 57.582 29.630 0.00 0.00 40.23 2.69
618 620 8.032451 CCTAAGAAGAAGTTTGTTTGGTTTCAA 58.968 33.333 0.00 0.00 0.00 2.69
619 621 7.394923 TCCTAAGAAGAAGTTTGTTTGGTTTCA 59.605 33.333 0.00 0.00 0.00 2.69
620 622 7.768240 TCCTAAGAAGAAGTTTGTTTGGTTTC 58.232 34.615 0.00 0.00 0.00 2.78
621 623 7.147897 CCTCCTAAGAAGAAGTTTGTTTGGTTT 60.148 37.037 0.00 0.00 0.00 3.27
622 624 6.321435 CCTCCTAAGAAGAAGTTTGTTTGGTT 59.679 38.462 0.00 0.00 0.00 3.67
623 625 5.828328 CCTCCTAAGAAGAAGTTTGTTTGGT 59.172 40.000 0.00 0.00 0.00 3.67
624 626 6.062095 TCCTCCTAAGAAGAAGTTTGTTTGG 58.938 40.000 0.00 0.00 0.00 3.28
625 627 7.751768 ATCCTCCTAAGAAGAAGTTTGTTTG 57.248 36.000 0.00 0.00 0.00 2.93
626 628 8.881262 TCTATCCTCCTAAGAAGAAGTTTGTTT 58.119 33.333 0.00 0.00 0.00 2.83
627 629 8.437274 TCTATCCTCCTAAGAAGAAGTTTGTT 57.563 34.615 0.00 0.00 0.00 2.83
628 630 8.482128 CATCTATCCTCCTAAGAAGAAGTTTGT 58.518 37.037 0.00 0.00 0.00 2.83
629 631 7.930865 CCATCTATCCTCCTAAGAAGAAGTTTG 59.069 40.741 0.00 0.00 0.00 2.93
630 632 7.071824 CCCATCTATCCTCCTAAGAAGAAGTTT 59.928 40.741 0.00 0.00 0.00 2.66
631 633 6.556874 CCCATCTATCCTCCTAAGAAGAAGTT 59.443 42.308 0.00 0.00 0.00 2.66
632 634 6.081356 CCCATCTATCCTCCTAAGAAGAAGT 58.919 44.000 0.00 0.00 0.00 3.01
633 635 5.483583 CCCCATCTATCCTCCTAAGAAGAAG 59.516 48.000 0.00 0.00 0.00 2.85
634 636 5.407049 CCCCATCTATCCTCCTAAGAAGAA 58.593 45.833 0.00 0.00 0.00 2.52
635 637 4.757645 GCCCCATCTATCCTCCTAAGAAGA 60.758 50.000 0.00 0.00 0.00 2.87
636 638 3.517500 GCCCCATCTATCCTCCTAAGAAG 59.482 52.174 0.00 0.00 0.00 2.85
637 639 3.521727 GCCCCATCTATCCTCCTAAGAA 58.478 50.000 0.00 0.00 0.00 2.52
638 640 2.557676 CGCCCCATCTATCCTCCTAAGA 60.558 54.545 0.00 0.00 0.00 2.10
639 641 1.827969 CGCCCCATCTATCCTCCTAAG 59.172 57.143 0.00 0.00 0.00 2.18
640 642 1.431633 TCGCCCCATCTATCCTCCTAA 59.568 52.381 0.00 0.00 0.00 2.69
641 643 1.081481 TCGCCCCATCTATCCTCCTA 58.919 55.000 0.00 0.00 0.00 2.94
642 644 0.415429 ATCGCCCCATCTATCCTCCT 59.585 55.000 0.00 0.00 0.00 3.69
643 645 1.208293 GAATCGCCCCATCTATCCTCC 59.792 57.143 0.00 0.00 0.00 4.30
644 646 1.902508 TGAATCGCCCCATCTATCCTC 59.097 52.381 0.00 0.00 0.00 3.71
645 647 2.030027 TGAATCGCCCCATCTATCCT 57.970 50.000 0.00 0.00 0.00 3.24
646 648 2.026822 ACATGAATCGCCCCATCTATCC 60.027 50.000 0.00 0.00 0.00 2.59
647 649 3.005554 CACATGAATCGCCCCATCTATC 58.994 50.000 0.00 0.00 0.00 2.08
648 650 2.639347 TCACATGAATCGCCCCATCTAT 59.361 45.455 0.00 0.00 0.00 1.98
649 651 2.037641 CTCACATGAATCGCCCCATCTA 59.962 50.000 0.00 0.00 0.00 1.98
650 652 0.839277 TCACATGAATCGCCCCATCT 59.161 50.000 0.00 0.00 0.00 2.90
651 653 1.202687 TCTCACATGAATCGCCCCATC 60.203 52.381 0.00 0.00 0.00 3.51
652 654 0.839277 TCTCACATGAATCGCCCCAT 59.161 50.000 0.00 0.00 0.00 4.00
653 655 0.839277 ATCTCACATGAATCGCCCCA 59.161 50.000 0.00 0.00 0.00 4.96
654 656 1.517242 GATCTCACATGAATCGCCCC 58.483 55.000 0.00 0.00 0.00 5.80
655 657 1.517242 GGATCTCACATGAATCGCCC 58.483 55.000 0.00 0.00 0.00 6.13
656 658 1.202687 TGGGATCTCACATGAATCGCC 60.203 52.381 0.00 2.19 0.00 5.54
657 659 2.245159 TGGGATCTCACATGAATCGC 57.755 50.000 0.00 6.05 0.00 4.58
664 666 7.015680 AGTTAGATCTACATGGGATCTCACAT 58.984 38.462 27.49 18.23 44.33 3.21
665 667 6.377080 AGTTAGATCTACATGGGATCTCACA 58.623 40.000 27.49 16.01 44.33 3.58
666 668 6.909550 AGTTAGATCTACATGGGATCTCAC 57.090 41.667 25.98 24.46 44.33 3.51
667 669 7.786943 AGAAAGTTAGATCTACATGGGATCTCA 59.213 37.037 25.98 17.80 44.33 3.27
668 670 8.189119 AGAAAGTTAGATCTACATGGGATCTC 57.811 38.462 25.98 17.44 44.33 2.75
672 674 9.434275 TGAATAGAAAGTTAGATCTACATGGGA 57.566 33.333 0.67 0.00 31.35 4.37
673 675 9.482627 GTGAATAGAAAGTTAGATCTACATGGG 57.517 37.037 0.67 0.00 31.35 4.00
677 679 9.175312 ACGAGTGAATAGAAAGTTAGATCTACA 57.825 33.333 0.67 0.00 31.35 2.74
678 680 9.440784 CACGAGTGAATAGAAAGTTAGATCTAC 57.559 37.037 0.67 0.00 31.35 2.59
679 681 8.622157 CCACGAGTGAATAGAAAGTTAGATCTA 58.378 37.037 4.59 0.00 33.00 1.98
680 682 7.416890 CCCACGAGTGAATAGAAAGTTAGATCT 60.417 40.741 4.59 0.00 0.00 2.75
681 683 6.697892 CCCACGAGTGAATAGAAAGTTAGATC 59.302 42.308 4.59 0.00 0.00 2.75
682 684 6.380274 TCCCACGAGTGAATAGAAAGTTAGAT 59.620 38.462 4.59 0.00 0.00 1.98
683 685 5.713389 TCCCACGAGTGAATAGAAAGTTAGA 59.287 40.000 4.59 0.00 0.00 2.10
684 686 5.962433 TCCCACGAGTGAATAGAAAGTTAG 58.038 41.667 4.59 0.00 0.00 2.34
685 687 5.988310 TCCCACGAGTGAATAGAAAGTTA 57.012 39.130 4.59 0.00 0.00 2.24
686 688 4.884668 TCCCACGAGTGAATAGAAAGTT 57.115 40.909 4.59 0.00 0.00 2.66
687 689 4.141914 GGATCCCACGAGTGAATAGAAAGT 60.142 45.833 0.00 0.00 0.00 2.66
688 690 4.372656 GGATCCCACGAGTGAATAGAAAG 58.627 47.826 0.00 0.00 0.00 2.62
689 691 3.181479 CGGATCCCACGAGTGAATAGAAA 60.181 47.826 6.06 0.00 0.00 2.52
690 692 2.361119 CGGATCCCACGAGTGAATAGAA 59.639 50.000 6.06 0.00 0.00 2.10
691 693 1.954382 CGGATCCCACGAGTGAATAGA 59.046 52.381 6.06 0.00 0.00 1.98
692 694 1.000163 CCGGATCCCACGAGTGAATAG 60.000 57.143 6.06 0.00 0.00 1.73
693 695 1.037493 CCGGATCCCACGAGTGAATA 58.963 55.000 6.06 0.00 0.00 1.75
694 696 1.686325 CCCGGATCCCACGAGTGAAT 61.686 60.000 0.73 0.00 0.00 2.57
695 697 2.355986 CCCGGATCCCACGAGTGAA 61.356 63.158 0.73 0.00 0.00 3.18
696 698 2.758327 CCCGGATCCCACGAGTGA 60.758 66.667 0.73 0.00 0.00 3.41
697 699 3.075005 ACCCGGATCCCACGAGTG 61.075 66.667 0.73 0.00 0.00 3.51
698 700 3.075005 CACCCGGATCCCACGAGT 61.075 66.667 0.73 0.00 0.00 4.18
699 701 3.849951 CCACCCGGATCCCACGAG 61.850 72.222 0.73 0.00 0.00 4.18
700 702 4.707768 ACCACCCGGATCCCACGA 62.708 66.667 0.73 0.00 35.59 4.35
701 703 4.157120 GACCACCCGGATCCCACG 62.157 72.222 0.73 0.00 35.59 4.94
702 704 2.687566 AGACCACCCGGATCCCAC 60.688 66.667 0.73 0.00 35.59 4.61
703 705 2.687200 CAGACCACCCGGATCCCA 60.687 66.667 0.73 0.00 35.59 4.37
704 706 3.480133 CCAGACCACCCGGATCCC 61.480 72.222 0.73 0.00 35.59 3.85
705 707 3.480133 CCCAGACCACCCGGATCC 61.480 72.222 0.73 0.00 35.59 3.36
706 708 3.480133 CCCCAGACCACCCGGATC 61.480 72.222 0.73 0.00 35.59 3.36
1830 1832 1.004440 GCTGCTTTCTCCAGACCGT 60.004 57.895 0.00 0.00 32.03 4.83
1892 1894 8.709308 TCCCATTTAAGGAAAAAGAATTTCACA 58.291 29.630 0.00 0.00 37.28 3.58
2108 2110 2.979130 CTCCTTTTCGGGAGCGATC 58.021 57.895 0.00 0.00 45.07 3.69
2179 2181 2.203788 AACCAGAGACCTCGCCCA 60.204 61.111 0.00 0.00 34.09 5.36
2203 2205 2.691996 TGCAGCTGGGCCATCCTA 60.692 61.111 17.12 0.00 36.20 2.94
2220 2222 5.222130 TGCTTCTTCTATTCTTTTCCCTGGT 60.222 40.000 0.00 0.00 0.00 4.00
2284 2288 4.221041 GTCTACCAACTGAGCTATATCCCC 59.779 50.000 0.00 0.00 0.00 4.81
2285 2289 4.221041 GGTCTACCAACTGAGCTATATCCC 59.779 50.000 0.00 0.00 35.64 3.85
2286 2290 5.081032 AGGTCTACCAACTGAGCTATATCC 58.919 45.833 1.26 0.00 38.97 2.59
2287 2291 5.184287 GGAGGTCTACCAACTGAGCTATATC 59.816 48.000 1.26 0.00 40.53 1.63
2307 2311 1.660560 CCCAATTGCAAGAGCGGAGG 61.661 60.000 4.94 0.00 46.23 4.30
2342 2346 3.624777 CCTGGACAATTAGACAGCCAAT 58.375 45.455 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.