Multiple sequence alignment - TraesCS1A01G336600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G336600 chr1A 100.000 3068 0 0 1 3068 524411082 524408015 0.000000e+00 5666
1 TraesCS1A01G336600 chr1A 99.048 210 1 1 2268 2477 524404084 524404292 2.890000e-100 375
2 TraesCS1A01G336600 chr1B 95.863 1982 76 4 159 2135 579982960 579980980 0.000000e+00 3201
3 TraesCS1A01G336600 chr1B 87.500 384 31 8 2701 3068 37835567 37835185 7.860000e-116 427
4 TraesCS1A01G336600 chr1B 94.444 198 5 1 2073 2270 579980982 579980791 1.790000e-77 300
5 TraesCS1A01G336600 chr3B 88.021 384 29 8 2701 3068 778368359 778368741 3.630000e-119 438
6 TraesCS1A01G336600 chr5D 91.837 245 18 2 2614 2857 501820172 501819929 1.050000e-89 340
7 TraesCS1A01G336600 chr5D 91.837 245 18 2 2614 2857 501859877 501859634 1.050000e-89 340
8 TraesCS1A01G336600 chr5D 91.133 203 16 1 2866 3068 501815865 501815665 1.080000e-69 274
9 TraesCS1A01G336600 chr5D 90.640 203 17 1 2866 3068 501855570 501855370 5.040000e-68 268
10 TraesCS1A01G336600 chr5D 87.597 129 11 3 2467 2590 501820683 501820555 8.870000e-31 145
11 TraesCS1A01G336600 chr5D 86.822 129 12 3 2467 2590 501860388 501860260 4.130000e-29 139
12 TraesCS1A01G336600 chr5A 96.273 161 6 0 1 161 556772044 556772204 6.520000e-67 265
13 TraesCS1A01G336600 chr5A 96.815 157 5 0 3 159 705965457 705965613 2.350000e-66 263
14 TraesCS1A01G336600 chr5A 95.181 166 7 1 1 166 688623821 688623657 8.440000e-66 261
15 TraesCS1A01G336600 chr3A 96.835 158 5 0 1 158 10225374 10225217 6.520000e-67 265
16 TraesCS1A01G336600 chr3A 96.835 158 5 0 1 158 468206481 468206638 6.520000e-67 265
17 TraesCS1A01G336600 chr4A 96.815 157 5 0 3 159 630747136 630747292 2.350000e-66 263
18 TraesCS1A01G336600 chr2A 94.706 170 7 2 1 170 152359319 152359486 2.350000e-66 263
19 TraesCS1A01G336600 chr6A 96.226 159 6 0 1 159 434749278 434749120 8.440000e-66 261
20 TraesCS1A01G336600 chr7A 95.122 164 6 2 1 164 110924646 110924807 1.090000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G336600 chr1A 524408015 524411082 3067 True 5666.0 5666 100.0000 1 3068 1 chr1A.!!$R1 3067
1 TraesCS1A01G336600 chr1B 579980791 579982960 2169 True 1750.5 3201 95.1535 159 2270 2 chr1B.!!$R2 2111
2 TraesCS1A01G336600 chr5D 501819929 501820683 754 True 242.5 340 89.7170 2467 2857 2 chr5D.!!$R3 390
3 TraesCS1A01G336600 chr5D 501859634 501860388 754 True 239.5 340 89.3295 2467 2857 2 chr5D.!!$R4 390

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.106669 GCCCCTATTGGTCCCTGTTC 60.107 60.0 0.0 0.0 0.0 3.18 F
1855 1861 0.033109 CAATGGGGGAGGGGAGAAAC 60.033 60.0 0.0 0.0 0.0 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2014 0.039346 GTCTACTAATCCGAGCGCCC 60.039 60.0 2.29 0.0 0.00 6.13 R
2904 3335 0.401356 TCCCAGCACATGAAGCTTGA 59.599 50.0 2.10 0.0 41.14 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.865769 CAAAAGGTCCAGACGAACCG 59.134 55.000 0.00 0.00 40.63 4.44
20 21 0.250166 AAAAGGTCCAGACGAACCGG 60.250 55.000 0.00 0.00 40.63 5.28
21 22 2.108278 AAAGGTCCAGACGAACCGGG 62.108 60.000 6.32 0.00 40.63 5.73
22 23 2.993264 GGTCCAGACGAACCGGGA 60.993 66.667 6.32 0.00 0.00 5.14
23 24 2.260743 GTCCAGACGAACCGGGAC 59.739 66.667 6.32 9.54 42.60 4.46
24 25 2.993264 TCCAGACGAACCGGGACC 60.993 66.667 6.32 0.00 0.00 4.46
25 26 3.307906 CCAGACGAACCGGGACCA 61.308 66.667 6.32 0.00 0.00 4.02
26 27 2.738480 CAGACGAACCGGGACCAA 59.262 61.111 6.32 0.00 0.00 3.67
27 28 1.295423 CAGACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 0.00 3.16
28 29 1.019278 CAGACGAACCGGGACCAATG 61.019 60.000 6.32 0.00 0.00 2.82
29 30 1.743995 GACGAACCGGGACCAATGG 60.744 63.158 6.32 0.00 0.00 3.16
30 31 3.131478 CGAACCGGGACCAATGGC 61.131 66.667 6.32 0.00 0.00 4.40
31 32 2.754254 GAACCGGGACCAATGGCC 60.754 66.667 6.32 0.00 0.00 5.36
32 33 4.376170 AACCGGGACCAATGGCCC 62.376 66.667 18.15 18.15 36.26 5.80
36 37 4.360405 GGGACCAATGGCCCACGT 62.360 66.667 21.67 0.00 38.39 4.49
37 38 3.061848 GGACCAATGGCCCACGTG 61.062 66.667 9.08 9.08 0.00 4.49
38 39 3.061848 GACCAATGGCCCACGTGG 61.062 66.667 28.26 28.26 37.09 4.94
65 66 2.359975 CCCCTTGGGCTCACGAAC 60.360 66.667 0.00 0.00 35.35 3.95
66 67 2.359975 CCCTTGGGCTCACGAACC 60.360 66.667 0.00 0.00 0.00 3.62
67 68 2.742372 CCTTGGGCTCACGAACCG 60.742 66.667 0.00 0.00 0.00 4.44
68 69 2.742372 CTTGGGCTCACGAACCGG 60.742 66.667 0.00 0.00 0.00 5.28
69 70 4.323477 TTGGGCTCACGAACCGGG 62.323 66.667 6.32 0.00 0.00 5.73
71 72 4.754667 GGGCTCACGAACCGGGTC 62.755 72.222 10.31 10.31 0.00 4.46
72 73 4.754667 GGCTCACGAACCGGGTCC 62.755 72.222 15.47 0.00 0.00 4.46
73 74 3.998672 GCTCACGAACCGGGTCCA 61.999 66.667 15.47 0.00 0.00 4.02
74 75 2.738480 CTCACGAACCGGGTCCAA 59.262 61.111 15.47 0.00 0.00 3.53
75 76 1.295423 CTCACGAACCGGGTCCAAT 59.705 57.895 15.47 0.00 0.00 3.16
76 77 1.004320 TCACGAACCGGGTCCAATG 60.004 57.895 15.47 10.37 0.00 2.82
77 78 2.359478 ACGAACCGGGTCCAATGC 60.359 61.111 15.47 0.00 0.00 3.56
78 79 3.131478 CGAACCGGGTCCAATGCC 61.131 66.667 15.47 0.00 0.00 4.40
79 80 2.754254 GAACCGGGTCCAATGCCC 60.754 66.667 8.85 0.00 42.68 5.36
80 81 4.376170 AACCGGGTCCAATGCCCC 62.376 66.667 6.32 0.00 43.18 5.80
82 83 3.093835 CCGGGTCCAATGCCCCTA 61.094 66.667 0.00 0.00 43.18 3.53
83 84 2.460853 CCGGGTCCAATGCCCCTAT 61.461 63.158 0.00 0.00 43.18 2.57
84 85 1.536676 CGGGTCCAATGCCCCTATT 59.463 57.895 4.97 0.00 43.18 1.73
85 86 0.823356 CGGGTCCAATGCCCCTATTG 60.823 60.000 4.97 0.00 43.18 1.90
90 91 3.131850 CAATGCCCCTATTGGTCCC 57.868 57.895 0.00 0.00 35.03 4.46
91 92 0.557729 CAATGCCCCTATTGGTCCCT 59.442 55.000 0.00 0.00 35.03 4.20
92 93 0.557729 AATGCCCCTATTGGTCCCTG 59.442 55.000 0.00 0.00 0.00 4.45
93 94 0.627469 ATGCCCCTATTGGTCCCTGT 60.627 55.000 0.00 0.00 0.00 4.00
94 95 0.849094 TGCCCCTATTGGTCCCTGTT 60.849 55.000 0.00 0.00 0.00 3.16
95 96 0.106669 GCCCCTATTGGTCCCTGTTC 60.107 60.000 0.00 0.00 0.00 3.18
96 97 1.596496 CCCCTATTGGTCCCTGTTCT 58.404 55.000 0.00 0.00 0.00 3.01
97 98 2.771688 CCCCTATTGGTCCCTGTTCTA 58.228 52.381 0.00 0.00 0.00 2.10
98 99 2.706190 CCCCTATTGGTCCCTGTTCTAG 59.294 54.545 0.00 0.00 0.00 2.43
99 100 3.632645 CCCCTATTGGTCCCTGTTCTAGA 60.633 52.174 0.00 0.00 0.00 2.43
100 101 3.388350 CCCTATTGGTCCCTGTTCTAGAC 59.612 52.174 0.00 0.00 0.00 2.59
101 102 4.290942 CCTATTGGTCCCTGTTCTAGACT 58.709 47.826 0.00 0.00 0.00 3.24
102 103 4.100189 CCTATTGGTCCCTGTTCTAGACTG 59.900 50.000 0.00 0.00 0.00 3.51
103 104 2.992847 TGGTCCCTGTTCTAGACTGA 57.007 50.000 0.00 0.00 0.00 3.41
104 105 3.254093 TGGTCCCTGTTCTAGACTGAA 57.746 47.619 0.00 0.00 0.00 3.02
105 106 2.897969 TGGTCCCTGTTCTAGACTGAAC 59.102 50.000 0.00 9.51 44.60 3.18
106 107 2.234168 GGTCCCTGTTCTAGACTGAACC 59.766 54.545 12.35 1.24 43.96 3.62
107 108 2.094649 GTCCCTGTTCTAGACTGAACCG 60.095 54.545 12.35 8.02 43.96 4.44
108 109 1.204941 CCCTGTTCTAGACTGAACCGG 59.795 57.143 0.00 0.00 45.07 5.28
109 110 1.204941 CCTGTTCTAGACTGAACCGGG 59.795 57.143 6.32 0.00 43.19 5.73
110 111 2.168496 CTGTTCTAGACTGAACCGGGA 58.832 52.381 6.32 0.00 43.96 5.14
111 112 1.891150 TGTTCTAGACTGAACCGGGAC 59.109 52.381 6.32 0.00 43.96 4.46
112 113 2.169330 GTTCTAGACTGAACCGGGACT 58.831 52.381 6.32 0.00 40.10 3.85
113 114 3.245016 TGTTCTAGACTGAACCGGGACTA 60.245 47.826 6.32 0.00 43.96 2.59
114 115 3.726557 TCTAGACTGAACCGGGACTAA 57.273 47.619 6.32 0.00 0.00 2.24
115 116 4.246712 TCTAGACTGAACCGGGACTAAT 57.753 45.455 6.32 0.00 0.00 1.73
116 117 3.952323 TCTAGACTGAACCGGGACTAATG 59.048 47.826 6.32 0.00 0.00 1.90
117 118 1.831736 AGACTGAACCGGGACTAATGG 59.168 52.381 6.32 0.00 0.00 3.16
118 119 0.909623 ACTGAACCGGGACTAATGGG 59.090 55.000 6.32 0.00 0.00 4.00
119 120 0.463833 CTGAACCGGGACTAATGGGC 60.464 60.000 6.32 0.00 0.00 5.36
120 121 0.912487 TGAACCGGGACTAATGGGCT 60.912 55.000 6.32 0.00 0.00 5.19
121 122 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
122 123 0.912487 AACCGGGACTAATGGGCTGA 60.912 55.000 6.32 0.00 0.00 4.26
123 124 1.146263 CCGGGACTAATGGGCTGAC 59.854 63.158 0.00 0.00 0.00 3.51
124 125 1.146263 CGGGACTAATGGGCTGACC 59.854 63.158 0.00 0.00 40.81 4.02
137 138 4.974438 TGACCCGGCCTGGACCTT 62.974 66.667 21.63 0.00 42.00 3.50
138 139 3.647771 GACCCGGCCTGGACCTTT 61.648 66.667 21.63 0.00 42.00 3.11
139 140 3.920093 GACCCGGCCTGGACCTTTG 62.920 68.421 21.63 2.26 42.00 2.77
140 141 3.966543 CCCGGCCTGGACCTTTGT 61.967 66.667 7.60 0.00 42.00 2.83
141 142 2.359975 CCGGCCTGGACCTTTGTC 60.360 66.667 7.77 0.00 42.00 3.18
153 154 4.368565 GACCTTTGTCCCCTTTTCTACT 57.631 45.455 0.00 0.00 35.34 2.57
154 155 5.494390 GACCTTTGTCCCCTTTTCTACTA 57.506 43.478 0.00 0.00 35.34 1.82
155 156 5.489249 GACCTTTGTCCCCTTTTCTACTAG 58.511 45.833 0.00 0.00 35.34 2.57
156 157 4.912133 ACCTTTGTCCCCTTTTCTACTAGT 59.088 41.667 0.00 0.00 0.00 2.57
157 158 5.221864 ACCTTTGTCCCCTTTTCTACTAGTG 60.222 44.000 5.39 0.00 0.00 2.74
158 159 3.975168 TGTCCCCTTTTCTACTAGTGC 57.025 47.619 5.39 0.00 0.00 4.40
159 160 2.570302 TGTCCCCTTTTCTACTAGTGCC 59.430 50.000 5.39 0.00 0.00 5.01
160 161 2.838813 GTCCCCTTTTCTACTAGTGCCT 59.161 50.000 5.39 0.00 0.00 4.75
161 162 4.028825 GTCCCCTTTTCTACTAGTGCCTA 58.971 47.826 5.39 0.00 0.00 3.93
162 163 4.468868 GTCCCCTTTTCTACTAGTGCCTAA 59.531 45.833 5.39 0.00 0.00 2.69
163 164 5.130643 GTCCCCTTTTCTACTAGTGCCTAAT 59.869 44.000 5.39 0.00 0.00 1.73
190 191 6.194692 GTGAAAACGGAATTAGATTTCGATGC 59.805 38.462 8.24 0.00 43.90 3.91
202 203 9.859427 ATTAGATTTCGATGCTTGAATCAAAAA 57.141 25.926 7.73 0.00 0.00 1.94
260 261 2.094700 GCACGTGTGGACAAGATCTAGA 60.095 50.000 18.38 0.00 0.00 2.43
282 283 1.831106 TGATTCCATCAGTAGCCACGT 59.169 47.619 0.00 0.00 33.59 4.49
304 305 2.597340 CAGGGGATGTGGCCGAAT 59.403 61.111 0.00 0.00 0.00 3.34
326 327 9.314321 CGAATAGTTTTCTTTCCTATTCTAGCA 57.686 33.333 13.63 0.00 42.21 3.49
339 340 1.043816 TCTAGCATAGACAGCTGGCC 58.956 55.000 18.28 8.21 44.15 5.36
356 357 1.818060 GGCCACAATGACATGCACTTA 59.182 47.619 0.00 0.00 0.00 2.24
375 376 5.751509 CACTTACTTTATATAGTGGTGCGCA 59.248 40.000 5.66 5.66 35.51 6.09
396 397 1.324134 CAAAACAACCAACAAGCGCAG 59.676 47.619 11.47 3.78 0.00 5.18
484 485 2.739671 GTACGAACCGTGTGCCCC 60.740 66.667 1.93 0.00 41.39 5.80
488 489 2.203294 GAACCGTGTGCCCCACTT 60.203 61.111 2.61 0.00 42.20 3.16
502 503 1.616865 CCCACTTGAGGTGTTACTCGA 59.383 52.381 0.00 0.00 43.94 4.04
549 552 6.012508 ACATCCCTAAATCAGAAAAGTGAGGA 60.013 38.462 0.00 0.00 0.00 3.71
749 754 2.095110 TGGCGCAATGTTCTGAAATCTG 60.095 45.455 10.83 0.00 0.00 2.90
799 804 9.811995 GATTAATGGTTTAGGTGGTTAAATTCC 57.188 33.333 0.00 0.00 0.00 3.01
805 810 6.348786 GGTTTAGGTGGTTAAATTCCGAAGAC 60.349 42.308 0.00 0.00 0.00 3.01
844 849 4.122143 TGGGTTCTTGCAGAAAACAAAG 57.878 40.909 9.30 0.00 35.75 2.77
909 914 3.626670 GCCAAGGTGATGATTCTTCTCTG 59.373 47.826 1.76 0.00 0.00 3.35
985 991 9.383519 CAATTGAAACCTATATATATCGGCAGT 57.616 33.333 12.17 0.00 0.00 4.40
998 1004 1.754803 TCGGCAGTATCAACCCTACAG 59.245 52.381 0.00 0.00 0.00 2.74
1016 1022 2.158769 ACAGCAGTGACAAAGACCATCA 60.159 45.455 0.00 0.00 0.00 3.07
1039 1045 3.228188 TGAGCTTGAGTCCAACCAAAT 57.772 42.857 0.00 0.00 0.00 2.32
1099 1105 1.896660 GGCACAAACGGAGGAGCAA 60.897 57.895 0.00 0.00 0.00 3.91
1138 1144 7.360113 ACAAGTAAGGATCCACAACAATTTT 57.640 32.000 15.82 0.00 0.00 1.82
1238 1244 1.083489 TCTTATTTGCCAGAACCGCG 58.917 50.000 0.00 0.00 0.00 6.46
1241 1247 1.029408 TATTTGCCAGAACCGCGCAT 61.029 50.000 8.75 0.00 31.44 4.73
1252 1258 4.598894 CGCGCATGGGGAGGAGAG 62.599 72.222 8.75 0.00 0.00 3.20
1253 1259 3.157252 GCGCATGGGGAGGAGAGA 61.157 66.667 12.19 0.00 0.00 3.10
1273 1279 2.009108 CATGGGAGCATGACGTTCG 58.991 57.895 0.00 0.00 34.66 3.95
1289 1295 0.750249 TTCGGACTCAAGAGCACACA 59.250 50.000 0.00 0.00 0.00 3.72
1295 1301 2.230025 GACTCAAGAGCACACAGAGCTA 59.770 50.000 0.00 0.00 43.58 3.32
1466 1472 1.301479 GCGAGGGAACGACAAGGTT 60.301 57.895 0.00 0.00 35.09 3.50
1507 1513 2.291411 ACAACCTCTACTTCCTCGCCTA 60.291 50.000 0.00 0.00 0.00 3.93
1524 1530 4.930405 TCGCCTACAATAATTTGACGAACA 59.070 37.500 0.00 0.00 36.64 3.18
1581 1587 2.347755 GTCGAGCCGTTTTATCCACTTC 59.652 50.000 0.00 0.00 0.00 3.01
1600 1606 1.494721 TCCCTTTGGCCCAAGCTATAG 59.505 52.381 11.14 0.00 39.73 1.31
1601 1607 1.494721 CCCTTTGGCCCAAGCTATAGA 59.505 52.381 11.14 0.00 39.73 1.98
1631 1637 1.337541 GGAGTACACAAAGGACCCGAC 60.338 57.143 0.00 0.00 0.00 4.79
1666 1672 5.816682 ACCTTCCCATAAGTTTCTAGTTGG 58.183 41.667 0.00 0.00 0.00 3.77
1679 1685 0.887387 TAGTTGGCGTTCCACTTGGC 60.887 55.000 0.00 0.00 43.33 4.52
1691 1697 0.514691 CACTTGGCAAAGAGTCGCTC 59.485 55.000 8.15 0.00 36.84 5.03
1725 1731 1.427592 CGTCCTCTCGTCCTACGACC 61.428 65.000 0.00 0.00 46.73 4.79
1728 1734 0.467384 CCTCTCGTCCTACGACCCTA 59.533 60.000 0.00 0.00 46.73 3.53
1741 1747 3.725490 ACGACCCTACTTCAACTTCAAC 58.275 45.455 0.00 0.00 0.00 3.18
1745 1751 2.554564 CCCTACTTCAACTTCAACCCCC 60.555 54.545 0.00 0.00 0.00 5.40
1855 1861 0.033109 CAATGGGGGAGGGGAGAAAC 60.033 60.000 0.00 0.00 0.00 2.78
1869 1875 4.223032 GGGGAGAAACATACTTGACTGAGA 59.777 45.833 0.00 0.00 0.00 3.27
1954 1960 1.005924 GGGCAGGAGAGATTTTTGGGA 59.994 52.381 0.00 0.00 0.00 4.37
1982 1988 4.115199 GCTGGGGAGTTGGCCGAT 62.115 66.667 0.00 0.00 0.00 4.18
2008 2014 1.448922 GACATCGAGTCTCCGGAGGG 61.449 65.000 30.80 17.26 44.35 4.30
2052 2058 2.445682 ACTTCGACCTGAGCCTAGAT 57.554 50.000 0.00 0.00 0.00 1.98
2207 2273 7.715265 ATTGTTGTTGTTGTTGTTGTTGTTA 57.285 28.000 0.00 0.00 0.00 2.41
2218 2284 5.795939 TGTTGTTGTTGTTATTGTTGTCGAC 59.204 36.000 9.11 9.11 0.00 4.20
2238 2304 1.463056 CGATGTGGTGCACGTTATTGT 59.537 47.619 11.45 0.00 37.14 2.71
2279 2345 4.699925 AGTTAACTTGGGAGCAACTACA 57.300 40.909 1.12 0.00 32.61 2.74
2280 2346 5.043737 AGTTAACTTGGGAGCAACTACAA 57.956 39.130 1.12 0.00 32.61 2.41
2281 2347 5.631119 AGTTAACTTGGGAGCAACTACAAT 58.369 37.500 1.12 0.00 32.61 2.71
2282 2348 6.775708 AGTTAACTTGGGAGCAACTACAATA 58.224 36.000 1.12 0.00 32.61 1.90
2283 2349 6.879458 AGTTAACTTGGGAGCAACTACAATAG 59.121 38.462 1.12 0.00 32.61 1.73
2284 2350 5.499004 AACTTGGGAGCAACTACAATAGA 57.501 39.130 0.00 0.00 0.00 1.98
2285 2351 5.499004 ACTTGGGAGCAACTACAATAGAA 57.501 39.130 0.00 0.00 0.00 2.10
2286 2352 5.491982 ACTTGGGAGCAACTACAATAGAAG 58.508 41.667 0.00 0.00 0.00 2.85
2287 2353 5.248477 ACTTGGGAGCAACTACAATAGAAGA 59.752 40.000 0.00 0.00 0.00 2.87
2288 2354 5.957771 TGGGAGCAACTACAATAGAAGAT 57.042 39.130 0.00 0.00 0.00 2.40
2289 2355 5.674525 TGGGAGCAACTACAATAGAAGATG 58.325 41.667 0.00 0.00 0.00 2.90
2290 2356 5.059833 GGGAGCAACTACAATAGAAGATGG 58.940 45.833 0.00 0.00 0.00 3.51
2291 2357 5.163301 GGGAGCAACTACAATAGAAGATGGA 60.163 44.000 0.00 0.00 0.00 3.41
2292 2358 5.755861 GGAGCAACTACAATAGAAGATGGAC 59.244 44.000 0.00 0.00 0.00 4.02
2293 2359 6.407525 GGAGCAACTACAATAGAAGATGGACT 60.408 42.308 0.00 0.00 0.00 3.85
2294 2360 6.951971 AGCAACTACAATAGAAGATGGACTT 58.048 36.000 0.00 0.00 42.03 3.01
2295 2361 6.820656 AGCAACTACAATAGAAGATGGACTTG 59.179 38.462 0.00 0.00 39.13 3.16
2296 2362 6.457528 GCAACTACAATAGAAGATGGACTTGC 60.458 42.308 0.00 0.00 39.13 4.01
2297 2363 5.352284 ACTACAATAGAAGATGGACTTGCG 58.648 41.667 0.00 0.00 39.13 4.85
2298 2364 3.535561 ACAATAGAAGATGGACTTGCGG 58.464 45.455 0.00 0.00 39.13 5.69
2299 2365 3.055094 ACAATAGAAGATGGACTTGCGGT 60.055 43.478 0.00 0.00 39.13 5.68
2300 2366 2.672961 TAGAAGATGGACTTGCGGTG 57.327 50.000 0.00 0.00 39.13 4.94
2301 2367 0.674895 AGAAGATGGACTTGCGGTGC 60.675 55.000 0.00 0.00 39.13 5.01
2333 2399 5.441718 AAAAATAGTCCAGAGCCATCAGA 57.558 39.130 0.00 0.00 0.00 3.27
2334 2400 5.643421 AAAATAGTCCAGAGCCATCAGAT 57.357 39.130 0.00 0.00 0.00 2.90
2335 2401 4.888326 AATAGTCCAGAGCCATCAGATC 57.112 45.455 0.00 0.00 0.00 2.75
2336 2402 2.171568 AGTCCAGAGCCATCAGATCA 57.828 50.000 0.00 0.00 0.00 2.92
2337 2403 2.692024 AGTCCAGAGCCATCAGATCAT 58.308 47.619 0.00 0.00 0.00 2.45
2338 2404 3.854437 AGTCCAGAGCCATCAGATCATA 58.146 45.455 0.00 0.00 0.00 2.15
2339 2405 3.833650 AGTCCAGAGCCATCAGATCATAG 59.166 47.826 0.00 0.00 0.00 2.23
2340 2406 3.831333 GTCCAGAGCCATCAGATCATAGA 59.169 47.826 0.00 0.00 0.00 1.98
2341 2407 4.467082 GTCCAGAGCCATCAGATCATAGAT 59.533 45.833 0.00 0.00 0.00 1.98
2342 2408 4.466726 TCCAGAGCCATCAGATCATAGATG 59.533 45.833 13.02 13.02 40.94 2.90
2349 2415 5.099042 CATCAGATCATAGATGGATGGCA 57.901 43.478 12.43 0.00 38.33 4.92
2350 2416 4.548451 TCAGATCATAGATGGATGGCAC 57.452 45.455 0.00 0.00 0.00 5.01
2351 2417 5.570844 CATCAGATCATAGATGGATGGCACA 60.571 44.000 12.43 0.00 39.71 4.57
2352 2418 7.347698 CATCAGATCATAGATGGATGGCACAG 61.348 46.154 12.43 0.00 39.15 3.66
2362 2428 2.520458 TGGCACAGGTTCTTGGGG 59.480 61.111 0.00 0.00 0.00 4.96
2363 2429 2.081787 TGGCACAGGTTCTTGGGGA 61.082 57.895 0.00 0.00 0.00 4.81
2364 2430 1.303643 GGCACAGGTTCTTGGGGAG 60.304 63.158 0.00 0.00 0.00 4.30
2365 2431 1.303643 GCACAGGTTCTTGGGGAGG 60.304 63.158 0.00 0.00 0.00 4.30
2366 2432 1.380302 CACAGGTTCTTGGGGAGGG 59.620 63.158 0.00 0.00 0.00 4.30
2367 2433 1.133809 CACAGGTTCTTGGGGAGGGA 61.134 60.000 0.00 0.00 0.00 4.20
2368 2434 0.178831 ACAGGTTCTTGGGGAGGGAT 60.179 55.000 0.00 0.00 0.00 3.85
2369 2435 0.548510 CAGGTTCTTGGGGAGGGATC 59.451 60.000 0.00 0.00 0.00 3.36
2370 2436 0.423544 AGGTTCTTGGGGAGGGATCT 59.576 55.000 0.00 0.00 0.00 2.75
2371 2437 0.840617 GGTTCTTGGGGAGGGATCTC 59.159 60.000 0.00 0.00 39.25 2.75
2372 2438 1.584724 GTTCTTGGGGAGGGATCTCA 58.415 55.000 0.00 0.00 41.69 3.27
2373 2439 1.488393 GTTCTTGGGGAGGGATCTCAG 59.512 57.143 0.00 0.00 41.69 3.35
2374 2440 0.030705 TCTTGGGGAGGGATCTCAGG 60.031 60.000 0.00 0.00 41.69 3.86
2375 2441 1.694169 TTGGGGAGGGATCTCAGGC 60.694 63.158 0.00 0.00 41.69 4.85
2376 2442 2.851588 GGGGAGGGATCTCAGGCC 60.852 72.222 0.00 0.00 41.69 5.19
2377 2443 2.040464 GGGAGGGATCTCAGGCCA 60.040 66.667 5.01 0.00 41.69 5.36
2378 2444 2.447714 GGGAGGGATCTCAGGCCAC 61.448 68.421 5.01 0.00 41.69 5.01
2379 2445 1.383803 GGAGGGATCTCAGGCCACT 60.384 63.158 5.01 0.00 41.69 4.00
2380 2446 0.985490 GGAGGGATCTCAGGCCACTT 60.985 60.000 5.01 0.00 41.69 3.16
2381 2447 1.692762 GGAGGGATCTCAGGCCACTTA 60.693 57.143 5.01 0.00 41.69 2.24
2382 2448 2.119495 GAGGGATCTCAGGCCACTTAA 58.881 52.381 5.01 0.00 39.74 1.85
2383 2449 2.505819 GAGGGATCTCAGGCCACTTAAA 59.494 50.000 5.01 0.00 39.74 1.52
2384 2450 3.126453 AGGGATCTCAGGCCACTTAAAT 58.874 45.455 5.01 0.00 0.00 1.40
2385 2451 3.117738 AGGGATCTCAGGCCACTTAAATG 60.118 47.826 5.01 0.00 0.00 2.32
2386 2452 3.217626 GGATCTCAGGCCACTTAAATGG 58.782 50.000 5.01 0.00 43.26 3.16
2387 2453 3.117888 GGATCTCAGGCCACTTAAATGGA 60.118 47.826 7.24 0.00 43.02 3.41
2399 2465 8.770438 GCCACTTAAATGGACATTTTATGAAA 57.230 30.769 7.24 3.36 43.02 2.69
2400 2466 9.213799 GCCACTTAAATGGACATTTTATGAAAA 57.786 29.630 7.24 2.75 43.02 2.29
2403 2469 9.719355 ACTTAAATGGACATTTTATGAAAACCC 57.281 29.630 14.68 0.00 40.99 4.11
2404 2470 9.161629 CTTAAATGGACATTTTATGAAAACCCC 57.838 33.333 14.68 0.00 40.99 4.95
2405 2471 5.692115 ATGGACATTTTATGAAAACCCCC 57.308 39.130 0.00 0.00 32.37 5.40
2426 2492 7.691993 CCCCCTAGTGGCAGTTATATATAAT 57.308 40.000 8.40 0.00 0.00 1.28
2427 2493 8.792830 CCCCCTAGTGGCAGTTATATATAATA 57.207 38.462 8.40 0.00 0.00 0.98
2428 2494 8.871125 CCCCCTAGTGGCAGTTATATATAATAG 58.129 40.741 8.40 5.79 0.00 1.73
2429 2495 9.656323 CCCCTAGTGGCAGTTATATATAATAGA 57.344 37.037 8.40 0.00 0.00 1.98
2446 2512 5.959618 AATAGAACTTTGCAGTAACCACC 57.040 39.130 0.00 0.00 30.68 4.61
2447 2513 3.577805 AGAACTTTGCAGTAACCACCT 57.422 42.857 0.00 0.00 30.68 4.00
2448 2514 3.477530 AGAACTTTGCAGTAACCACCTC 58.522 45.455 0.00 0.00 30.68 3.85
2449 2515 3.118038 AGAACTTTGCAGTAACCACCTCA 60.118 43.478 0.00 0.00 30.68 3.86
2450 2516 3.290948 ACTTTGCAGTAACCACCTCAA 57.709 42.857 0.00 0.00 0.00 3.02
2451 2517 3.214328 ACTTTGCAGTAACCACCTCAAG 58.786 45.455 0.00 0.00 0.00 3.02
2452 2518 3.214328 CTTTGCAGTAACCACCTCAAGT 58.786 45.455 0.00 0.00 0.00 3.16
2453 2519 4.141574 ACTTTGCAGTAACCACCTCAAGTA 60.142 41.667 0.00 0.00 0.00 2.24
2454 2520 3.396260 TGCAGTAACCACCTCAAGTAC 57.604 47.619 0.00 0.00 0.00 2.73
2455 2521 2.038033 TGCAGTAACCACCTCAAGTACC 59.962 50.000 0.00 0.00 0.00 3.34
2456 2522 2.302157 GCAGTAACCACCTCAAGTACCT 59.698 50.000 0.00 0.00 0.00 3.08
2457 2523 3.616802 GCAGTAACCACCTCAAGTACCTC 60.617 52.174 0.00 0.00 0.00 3.85
2458 2524 3.576982 CAGTAACCACCTCAAGTACCTCA 59.423 47.826 0.00 0.00 0.00 3.86
2459 2525 4.223032 CAGTAACCACCTCAAGTACCTCAT 59.777 45.833 0.00 0.00 0.00 2.90
2460 2526 3.983044 AACCACCTCAAGTACCTCATC 57.017 47.619 0.00 0.00 0.00 2.92
2461 2527 3.191888 ACCACCTCAAGTACCTCATCT 57.808 47.619 0.00 0.00 0.00 2.90
2462 2528 3.100671 ACCACCTCAAGTACCTCATCTC 58.899 50.000 0.00 0.00 0.00 2.75
2463 2529 2.432510 CCACCTCAAGTACCTCATCTCC 59.567 54.545 0.00 0.00 0.00 3.71
2464 2530 2.432510 CACCTCAAGTACCTCATCTCCC 59.567 54.545 0.00 0.00 0.00 4.30
2465 2531 2.316372 ACCTCAAGTACCTCATCTCCCT 59.684 50.000 0.00 0.00 0.00 4.20
2473 2539 3.142579 ACCTCATCTCCCTCTCCAATT 57.857 47.619 0.00 0.00 0.00 2.32
2474 2540 2.776536 ACCTCATCTCCCTCTCCAATTG 59.223 50.000 0.00 0.00 0.00 2.32
2475 2541 2.776536 CCTCATCTCCCTCTCCAATTGT 59.223 50.000 4.43 0.00 0.00 2.71
2479 2545 4.163078 TCATCTCCCTCTCCAATTGTTCTC 59.837 45.833 4.43 0.00 0.00 2.87
2495 2561 4.072131 TGTTCTCTCCAGCAACCATTTAC 58.928 43.478 0.00 0.00 0.00 2.01
2497 2563 4.574674 TCTCTCCAGCAACCATTTACAT 57.425 40.909 0.00 0.00 0.00 2.29
2498 2564 4.517285 TCTCTCCAGCAACCATTTACATC 58.483 43.478 0.00 0.00 0.00 3.06
2499 2565 3.270027 TCTCCAGCAACCATTTACATCG 58.730 45.455 0.00 0.00 0.00 3.84
2500 2566 3.009723 CTCCAGCAACCATTTACATCGT 58.990 45.455 0.00 0.00 0.00 3.73
2601 2672 7.459795 TTCATTGCATTAGTGGATTGTACAA 57.540 32.000 11.41 11.41 31.51 2.41
2602 2673 6.851609 TCATTGCATTAGTGGATTGTACAAC 58.148 36.000 11.22 5.10 31.51 3.32
2603 2674 6.432472 TCATTGCATTAGTGGATTGTACAACA 59.568 34.615 11.22 2.31 31.51 3.33
2604 2675 6.832520 TTGCATTAGTGGATTGTACAACAT 57.167 33.333 11.22 0.00 0.00 2.71
2605 2676 6.435430 TGCATTAGTGGATTGTACAACATC 57.565 37.500 11.22 5.52 0.00 3.06
2608 2679 6.094048 GCATTAGTGGATTGTACAACATCACT 59.906 38.462 27.82 27.82 37.67 3.41
2609 2680 7.279981 GCATTAGTGGATTGTACAACATCACTA 59.720 37.037 26.49 26.49 36.44 2.74
2611 2682 9.905713 ATTAGTGGATTGTACAACATCACTAAT 57.094 29.630 33.87 33.87 42.73 1.73
2612 2683 9.733556 TTAGTGGATTGTACAACATCACTAATT 57.266 29.630 30.83 18.79 39.09 1.40
2624 3054 7.340232 ACAACATCACTAATTATGCATGGAAGT 59.660 33.333 10.16 4.78 0.00 3.01
2633 3063 9.454585 CTAATTATGCATGGAAGTTTGTACATG 57.545 33.333 10.16 0.00 42.61 3.21
2642 3072 4.261031 GGAAGTTTGTACATGTTTGTCGCT 60.261 41.667 2.30 0.00 37.28 4.93
2647 3077 7.251994 AGTTTGTACATGTTTGTCGCTAAAAA 58.748 30.769 2.30 0.00 37.28 1.94
2726 3157 5.520632 TGTCAAACTAGAACAAGAGACTCG 58.479 41.667 0.00 0.00 0.00 4.18
2743 3174 6.039829 AGAGACTCGCATACATATCAAGTGAA 59.960 38.462 0.00 0.00 0.00 3.18
2774 3205 8.480643 AGAGAATCATTTTTACTACTTGACCG 57.519 34.615 0.00 0.00 37.82 4.79
2799 3230 9.530633 CGGCAAGACTAACTCTTAACTATAAAT 57.469 33.333 0.00 0.00 37.08 1.40
2857 3288 9.793252 CTATTAACAATTGCATCAGCTTTACTT 57.207 29.630 5.05 0.00 42.74 2.24
2858 3289 7.872163 TTAACAATTGCATCAGCTTTACTTG 57.128 32.000 5.05 0.00 42.74 3.16
2859 3290 4.813027 ACAATTGCATCAGCTTTACTTGG 58.187 39.130 5.05 0.00 42.74 3.61
2860 3291 4.281688 ACAATTGCATCAGCTTTACTTGGT 59.718 37.500 5.05 0.00 42.74 3.67
2861 3292 5.221501 ACAATTGCATCAGCTTTACTTGGTT 60.222 36.000 5.05 0.00 42.74 3.67
2862 3293 3.921119 TGCATCAGCTTTACTTGGTTG 57.079 42.857 0.00 0.00 42.74 3.77
2863 3294 3.485394 TGCATCAGCTTTACTTGGTTGA 58.515 40.909 0.00 0.00 42.74 3.18
2864 3295 3.503363 TGCATCAGCTTTACTTGGTTGAG 59.497 43.478 0.00 0.00 42.74 3.02
2865 3296 3.119708 GCATCAGCTTTACTTGGTTGAGG 60.120 47.826 0.00 0.00 37.91 3.86
2866 3297 2.504367 TCAGCTTTACTTGGTTGAGGC 58.496 47.619 0.00 0.00 0.00 4.70
2867 3298 2.106511 TCAGCTTTACTTGGTTGAGGCT 59.893 45.455 0.00 0.00 0.00 4.58
2868 3299 2.485814 CAGCTTTACTTGGTTGAGGCTC 59.514 50.000 7.79 7.79 0.00 4.70
2869 3300 2.373502 AGCTTTACTTGGTTGAGGCTCT 59.626 45.455 16.72 0.00 0.00 4.09
2870 3301 3.583086 AGCTTTACTTGGTTGAGGCTCTA 59.417 43.478 16.72 5.10 0.00 2.43
2871 3302 3.935828 GCTTTACTTGGTTGAGGCTCTAG 59.064 47.826 16.72 7.66 0.00 2.43
2872 3303 3.611766 TTACTTGGTTGAGGCTCTAGC 57.388 47.619 18.97 18.97 41.14 3.42
2873 3304 1.650528 ACTTGGTTGAGGCTCTAGCT 58.349 50.000 24.27 6.21 41.70 3.32
2874 3305 1.981495 ACTTGGTTGAGGCTCTAGCTT 59.019 47.619 24.27 9.76 41.70 3.74
2875 3306 2.373502 ACTTGGTTGAGGCTCTAGCTTT 59.626 45.455 24.27 9.46 41.70 3.51
2876 3307 3.181439 ACTTGGTTGAGGCTCTAGCTTTT 60.181 43.478 24.27 9.16 41.70 2.27
2877 3308 3.059352 TGGTTGAGGCTCTAGCTTTTC 57.941 47.619 24.27 2.21 41.70 2.29
2878 3309 2.290323 TGGTTGAGGCTCTAGCTTTTCC 60.290 50.000 24.27 10.86 41.70 3.13
2879 3310 2.360844 GTTGAGGCTCTAGCTTTTCCC 58.639 52.381 16.72 0.00 41.70 3.97
2880 3311 1.958288 TGAGGCTCTAGCTTTTCCCT 58.042 50.000 16.72 0.00 41.70 4.20
2881 3312 1.834263 TGAGGCTCTAGCTTTTCCCTC 59.166 52.381 16.72 13.30 41.70 4.30
2882 3313 1.140052 GAGGCTCTAGCTTTTCCCTCC 59.860 57.143 7.40 0.00 41.70 4.30
2883 3314 0.912486 GGCTCTAGCTTTTCCCTCCA 59.088 55.000 0.00 0.00 41.70 3.86
2884 3315 1.134250 GGCTCTAGCTTTTCCCTCCAG 60.134 57.143 0.00 0.00 41.70 3.86
2885 3316 1.557371 GCTCTAGCTTTTCCCTCCAGT 59.443 52.381 0.00 0.00 38.21 4.00
2886 3317 2.026729 GCTCTAGCTTTTCCCTCCAGTT 60.027 50.000 0.00 0.00 38.21 3.16
2887 3318 3.867857 CTCTAGCTTTTCCCTCCAGTTC 58.132 50.000 0.00 0.00 0.00 3.01
2888 3319 3.517500 CTCTAGCTTTTCCCTCCAGTTCT 59.482 47.826 0.00 0.00 0.00 3.01
2889 3320 2.575805 AGCTTTTCCCTCCAGTTCTG 57.424 50.000 0.00 0.00 0.00 3.02
2890 3321 0.884514 GCTTTTCCCTCCAGTTCTGC 59.115 55.000 0.00 0.00 0.00 4.26
2891 3322 1.546548 GCTTTTCCCTCCAGTTCTGCT 60.547 52.381 0.00 0.00 0.00 4.24
2892 3323 2.157738 CTTTTCCCTCCAGTTCTGCTG 58.842 52.381 0.00 0.00 44.63 4.41
2893 3324 0.250901 TTTCCCTCCAGTTCTGCTGC 60.251 55.000 0.00 0.00 43.71 5.25
2894 3325 1.130054 TTCCCTCCAGTTCTGCTGCT 61.130 55.000 0.00 0.00 43.71 4.24
2895 3326 1.130054 TCCCTCCAGTTCTGCTGCTT 61.130 55.000 0.00 0.00 43.71 3.91
2896 3327 0.676151 CCCTCCAGTTCTGCTGCTTC 60.676 60.000 0.00 0.00 43.71 3.86
2897 3328 0.324285 CCTCCAGTTCTGCTGCTTCT 59.676 55.000 0.00 0.00 43.71 2.85
2898 3329 1.271271 CCTCCAGTTCTGCTGCTTCTT 60.271 52.381 0.00 0.00 43.71 2.52
2899 3330 1.805345 CTCCAGTTCTGCTGCTTCTTG 59.195 52.381 0.00 0.00 43.71 3.02
2900 3331 0.240411 CCAGTTCTGCTGCTTCTTGC 59.760 55.000 0.00 0.00 43.71 4.01
2901 3332 1.236628 CAGTTCTGCTGCTTCTTGCT 58.763 50.000 0.00 0.00 43.37 3.91
2902 3333 1.197264 CAGTTCTGCTGCTTCTTGCTC 59.803 52.381 0.00 0.00 43.37 4.26
2903 3334 1.202734 AGTTCTGCTGCTTCTTGCTCA 60.203 47.619 0.00 0.00 43.37 4.26
2904 3335 1.811359 GTTCTGCTGCTTCTTGCTCAT 59.189 47.619 0.00 0.00 43.37 2.90
2905 3336 1.735386 TCTGCTGCTTCTTGCTCATC 58.265 50.000 0.00 0.00 43.37 2.92
2906 3337 1.002773 TCTGCTGCTTCTTGCTCATCA 59.997 47.619 0.00 0.00 43.37 3.07
2907 3338 1.810755 CTGCTGCTTCTTGCTCATCAA 59.189 47.619 0.00 0.00 43.37 2.57
2920 3351 3.406728 CTCATCAAGCTTCATGTGCTG 57.593 47.619 10.33 0.00 41.03 4.41
2921 3352 2.089201 TCATCAAGCTTCATGTGCTGG 58.911 47.619 10.33 12.36 41.03 4.85
2922 3353 1.134367 CATCAAGCTTCATGTGCTGGG 59.866 52.381 14.55 10.97 41.03 4.45
2923 3354 0.401356 TCAAGCTTCATGTGCTGGGA 59.599 50.000 14.55 12.59 41.03 4.37
2924 3355 0.809385 CAAGCTTCATGTGCTGGGAG 59.191 55.000 14.55 4.71 41.03 4.30
2925 3356 0.694771 AAGCTTCATGTGCTGGGAGA 59.305 50.000 14.55 0.00 41.03 3.71
2926 3357 0.694771 AGCTTCATGTGCTGGGAGAA 59.305 50.000 13.42 0.00 39.56 2.87
2927 3358 1.074405 AGCTTCATGTGCTGGGAGAAA 59.926 47.619 13.42 0.00 39.56 2.52
2928 3359 2.097825 GCTTCATGTGCTGGGAGAAAT 58.902 47.619 6.28 0.00 0.00 2.17
2929 3360 2.098770 GCTTCATGTGCTGGGAGAAATC 59.901 50.000 6.28 0.00 0.00 2.17
2930 3361 3.349927 CTTCATGTGCTGGGAGAAATCA 58.650 45.455 0.00 0.00 0.00 2.57
2931 3362 2.715046 TCATGTGCTGGGAGAAATCAC 58.285 47.619 0.00 0.00 0.00 3.06
2932 3363 2.040145 TCATGTGCTGGGAGAAATCACA 59.960 45.455 0.00 0.00 41.18 3.58
2933 3364 2.885135 TGTGCTGGGAGAAATCACAT 57.115 45.000 0.00 0.00 33.33 3.21
2934 3365 2.715046 TGTGCTGGGAGAAATCACATC 58.285 47.619 0.00 0.00 33.33 3.06
2935 3366 2.040145 TGTGCTGGGAGAAATCACATCA 59.960 45.455 0.00 0.00 33.33 3.07
2936 3367 3.084039 GTGCTGGGAGAAATCACATCAA 58.916 45.455 0.00 0.00 0.00 2.57
2937 3368 3.507233 GTGCTGGGAGAAATCACATCAAA 59.493 43.478 0.00 0.00 0.00 2.69
2938 3369 3.507233 TGCTGGGAGAAATCACATCAAAC 59.493 43.478 0.00 0.00 0.00 2.93
2939 3370 3.507233 GCTGGGAGAAATCACATCAAACA 59.493 43.478 0.00 0.00 0.00 2.83
2940 3371 4.022068 GCTGGGAGAAATCACATCAAACAA 60.022 41.667 0.00 0.00 0.00 2.83
2941 3372 5.509501 GCTGGGAGAAATCACATCAAACAAA 60.510 40.000 0.00 0.00 0.00 2.83
2942 3373 5.841810 TGGGAGAAATCACATCAAACAAAC 58.158 37.500 0.00 0.00 0.00 2.93
2943 3374 5.362143 TGGGAGAAATCACATCAAACAAACA 59.638 36.000 0.00 0.00 0.00 2.83
2944 3375 5.691754 GGGAGAAATCACATCAAACAAACAC 59.308 40.000 0.00 0.00 0.00 3.32
2945 3376 5.399301 GGAGAAATCACATCAAACAAACACG 59.601 40.000 0.00 0.00 0.00 4.49
2946 3377 6.130298 AGAAATCACATCAAACAAACACGA 57.870 33.333 0.00 0.00 0.00 4.35
2947 3378 6.738114 AGAAATCACATCAAACAAACACGAT 58.262 32.000 0.00 0.00 0.00 3.73
2948 3379 7.202526 AGAAATCACATCAAACAAACACGATT 58.797 30.769 0.00 0.00 0.00 3.34
2949 3380 6.991485 AATCACATCAAACAAACACGATTC 57.009 33.333 0.00 0.00 0.00 2.52
2950 3381 5.491635 TCACATCAAACAAACACGATTCA 57.508 34.783 0.00 0.00 0.00 2.57
2951 3382 5.509771 TCACATCAAACAAACACGATTCAG 58.490 37.500 0.00 0.00 0.00 3.02
2952 3383 5.065859 TCACATCAAACAAACACGATTCAGT 59.934 36.000 0.00 0.00 0.00 3.41
2953 3384 5.743398 CACATCAAACAAACACGATTCAGTT 59.257 36.000 0.00 0.00 0.00 3.16
2954 3385 6.909895 CACATCAAACAAACACGATTCAGTTA 59.090 34.615 0.00 0.00 0.00 2.24
2955 3386 7.430793 CACATCAAACAAACACGATTCAGTTAA 59.569 33.333 0.00 0.00 0.00 2.01
2956 3387 7.643764 ACATCAAACAAACACGATTCAGTTAAG 59.356 33.333 0.00 0.00 0.00 1.85
2957 3388 5.968848 TCAAACAAACACGATTCAGTTAAGC 59.031 36.000 0.00 0.00 0.00 3.09
2958 3389 5.493133 AACAAACACGATTCAGTTAAGCA 57.507 34.783 0.00 0.00 0.00 3.91
2959 3390 4.844267 ACAAACACGATTCAGTTAAGCAC 58.156 39.130 0.00 0.00 0.00 4.40
2960 3391 4.334203 ACAAACACGATTCAGTTAAGCACA 59.666 37.500 0.00 0.00 0.00 4.57
2961 3392 5.008613 ACAAACACGATTCAGTTAAGCACAT 59.991 36.000 0.00 0.00 0.00 3.21
2962 3393 4.668576 ACACGATTCAGTTAAGCACATG 57.331 40.909 0.00 0.00 0.00 3.21
2963 3394 4.065088 ACACGATTCAGTTAAGCACATGT 58.935 39.130 0.00 0.00 0.00 3.21
2964 3395 5.234752 ACACGATTCAGTTAAGCACATGTA 58.765 37.500 0.00 0.00 0.00 2.29
2965 3396 5.874810 ACACGATTCAGTTAAGCACATGTAT 59.125 36.000 0.00 0.00 0.00 2.29
2966 3397 6.183360 ACACGATTCAGTTAAGCACATGTATG 60.183 38.462 0.00 0.00 0.00 2.39
2967 3398 5.874810 ACGATTCAGTTAAGCACATGTATGT 59.125 36.000 0.00 0.00 42.84 2.29
2979 3410 2.754552 ACATGTATGTGTTGGTGGATGC 59.245 45.455 0.00 0.00 40.03 3.91
2980 3411 2.877097 TGTATGTGTTGGTGGATGCT 57.123 45.000 0.00 0.00 0.00 3.79
2981 3412 3.153369 TGTATGTGTTGGTGGATGCTT 57.847 42.857 0.00 0.00 0.00 3.91
2982 3413 4.293662 TGTATGTGTTGGTGGATGCTTA 57.706 40.909 0.00 0.00 0.00 3.09
2983 3414 4.657013 TGTATGTGTTGGTGGATGCTTAA 58.343 39.130 0.00 0.00 0.00 1.85
2984 3415 4.457603 TGTATGTGTTGGTGGATGCTTAAC 59.542 41.667 0.00 0.00 0.00 2.01
2985 3416 2.937519 TGTGTTGGTGGATGCTTAACA 58.062 42.857 0.00 0.00 0.00 2.41
2986 3417 3.291584 TGTGTTGGTGGATGCTTAACAA 58.708 40.909 0.00 0.00 33.59 2.83
2987 3418 3.701542 TGTGTTGGTGGATGCTTAACAAA 59.298 39.130 0.00 0.00 33.59 2.83
2988 3419 4.160439 TGTGTTGGTGGATGCTTAACAAAA 59.840 37.500 0.00 0.00 33.59 2.44
2989 3420 5.163364 TGTGTTGGTGGATGCTTAACAAAAT 60.163 36.000 0.00 0.00 33.59 1.82
2990 3421 6.040955 TGTGTTGGTGGATGCTTAACAAAATA 59.959 34.615 0.00 0.00 33.59 1.40
2991 3422 6.926272 GTGTTGGTGGATGCTTAACAAAATAA 59.074 34.615 0.00 0.00 33.59 1.40
2992 3423 7.602265 GTGTTGGTGGATGCTTAACAAAATAAT 59.398 33.333 0.00 0.00 33.59 1.28
2993 3424 8.153550 TGTTGGTGGATGCTTAACAAAATAATT 58.846 29.630 0.00 0.00 0.00 1.40
2994 3425 9.646427 GTTGGTGGATGCTTAACAAAATAATTA 57.354 29.630 0.00 0.00 0.00 1.40
3021 3452 6.932901 TTTTCTTGCAGATAAATTCTTGCG 57.067 33.333 0.00 0.00 33.69 4.85
3022 3453 5.878332 TTCTTGCAGATAAATTCTTGCGA 57.122 34.783 0.00 0.00 33.69 5.10
3023 3454 6.441093 TTCTTGCAGATAAATTCTTGCGAT 57.559 33.333 0.00 0.00 33.69 4.58
3024 3455 6.441093 TCTTGCAGATAAATTCTTGCGATT 57.559 33.333 0.00 0.00 33.69 3.34
3025 3456 6.489675 TCTTGCAGATAAATTCTTGCGATTC 58.510 36.000 0.00 0.00 33.69 2.52
3026 3457 5.173774 TGCAGATAAATTCTTGCGATTCC 57.826 39.130 0.00 0.00 33.69 3.01
3027 3458 4.639755 TGCAGATAAATTCTTGCGATTCCA 59.360 37.500 0.00 0.00 33.69 3.53
3028 3459 5.125257 TGCAGATAAATTCTTGCGATTCCAA 59.875 36.000 0.00 0.00 33.69 3.53
3029 3460 5.684626 GCAGATAAATTCTTGCGATTCCAAG 59.315 40.000 7.98 7.98 42.73 3.61
3030 3461 6.204359 CAGATAAATTCTTGCGATTCCAAGG 58.796 40.000 12.19 0.00 41.89 3.61
3031 3462 3.874392 AAATTCTTGCGATTCCAAGGG 57.126 42.857 12.19 0.00 41.89 3.95
3032 3463 2.806945 ATTCTTGCGATTCCAAGGGA 57.193 45.000 12.19 0.00 41.89 4.20
3033 3464 2.577606 TTCTTGCGATTCCAAGGGAA 57.422 45.000 0.00 0.00 46.39 3.97
3034 3465 1.821216 TCTTGCGATTCCAAGGGAAC 58.179 50.000 0.00 0.00 45.07 3.62
3035 3466 1.073125 TCTTGCGATTCCAAGGGAACA 59.927 47.619 0.00 0.00 45.07 3.18
3036 3467 1.885887 CTTGCGATTCCAAGGGAACAA 59.114 47.619 0.00 0.28 45.07 2.83
3037 3468 2.214376 TGCGATTCCAAGGGAACAAT 57.786 45.000 0.00 0.00 45.07 2.71
3038 3469 2.524306 TGCGATTCCAAGGGAACAATT 58.476 42.857 0.00 0.00 45.07 2.32
3039 3470 3.691575 TGCGATTCCAAGGGAACAATTA 58.308 40.909 0.00 0.00 45.07 1.40
3040 3471 4.082845 TGCGATTCCAAGGGAACAATTAA 58.917 39.130 0.00 0.00 45.07 1.40
3041 3472 4.524714 TGCGATTCCAAGGGAACAATTAAA 59.475 37.500 0.00 0.00 45.07 1.52
3042 3473 5.011125 TGCGATTCCAAGGGAACAATTAAAA 59.989 36.000 0.00 0.00 45.07 1.52
3043 3474 6.106003 GCGATTCCAAGGGAACAATTAAAAT 58.894 36.000 0.00 0.00 45.07 1.82
3044 3475 6.593770 GCGATTCCAAGGGAACAATTAAAATT 59.406 34.615 0.00 0.00 45.07 1.82
3045 3476 7.762159 GCGATTCCAAGGGAACAATTAAAATTA 59.238 33.333 0.00 0.00 45.07 1.40
3046 3477 9.816354 CGATTCCAAGGGAACAATTAAAATTAT 57.184 29.630 0.00 0.00 45.07 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.250166 CCGGTTCGTCTGGACCTTTT 60.250 55.000 0.00 0.00 45.09 2.27
2 3 1.370064 CCGGTTCGTCTGGACCTTT 59.630 57.895 0.00 0.00 45.09 3.11
5 6 2.993264 TCCCGGTTCGTCTGGACC 60.993 66.667 0.00 0.00 45.09 4.46
6 7 2.260743 GTCCCGGTTCGTCTGGAC 59.739 66.667 0.00 0.00 45.09 4.02
7 8 2.993264 GGTCCCGGTTCGTCTGGA 60.993 66.667 0.00 0.00 45.09 3.86
8 9 2.180159 ATTGGTCCCGGTTCGTCTGG 62.180 60.000 0.00 2.18 42.06 3.86
9 10 1.019278 CATTGGTCCCGGTTCGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
10 11 1.295423 CATTGGTCCCGGTTCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
11 12 1.743995 CCATTGGTCCCGGTTCGTC 60.744 63.158 0.00 0.00 0.00 4.20
12 13 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
13 14 3.131478 GCCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
14 15 2.754254 GGCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
15 16 4.376170 GGGCCATTGGTCCCGGTT 62.376 66.667 15.98 0.00 42.67 4.44
21 22 3.061848 CCACGTGGGCCATTGGTC 61.062 66.667 27.57 0.54 0.00 4.02
49 50 2.359975 GGTTCGTGAGCCCAAGGG 60.360 66.667 0.00 0.00 38.57 3.95
50 51 2.742372 CGGTTCGTGAGCCCAAGG 60.742 66.667 0.00 0.00 0.00 3.61
51 52 2.742372 CCGGTTCGTGAGCCCAAG 60.742 66.667 0.00 0.00 0.00 3.61
52 53 4.323477 CCCGGTTCGTGAGCCCAA 62.323 66.667 0.00 0.00 0.00 4.12
54 55 4.754667 GACCCGGTTCGTGAGCCC 62.755 72.222 0.00 0.00 0.00 5.19
55 56 4.754667 GGACCCGGTTCGTGAGCC 62.755 72.222 0.00 0.00 0.00 4.70
56 57 2.798148 ATTGGACCCGGTTCGTGAGC 62.798 60.000 0.00 0.00 0.00 4.26
57 58 1.019278 CATTGGACCCGGTTCGTGAG 61.019 60.000 0.00 0.00 0.00 3.51
58 59 1.004320 CATTGGACCCGGTTCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
59 60 2.686816 GCATTGGACCCGGTTCGTG 61.687 63.158 0.00 0.00 0.00 4.35
60 61 2.359478 GCATTGGACCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
61 62 3.131478 GGCATTGGACCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
62 63 2.754254 GGGCATTGGACCCGGTTC 60.754 66.667 0.00 0.00 37.67 3.62
77 78 1.596496 AGAACAGGGACCAATAGGGG 58.404 55.000 0.00 0.00 42.91 4.79
78 79 3.388350 GTCTAGAACAGGGACCAATAGGG 59.612 52.174 0.00 0.00 44.81 3.53
79 80 4.100189 CAGTCTAGAACAGGGACCAATAGG 59.900 50.000 0.00 0.00 42.21 2.57
80 81 4.956700 TCAGTCTAGAACAGGGACCAATAG 59.043 45.833 0.00 0.00 0.00 1.73
81 82 4.942944 TCAGTCTAGAACAGGGACCAATA 58.057 43.478 0.00 0.00 0.00 1.90
82 83 3.791320 TCAGTCTAGAACAGGGACCAAT 58.209 45.455 0.00 0.00 0.00 3.16
83 84 3.254093 TCAGTCTAGAACAGGGACCAA 57.746 47.619 0.00 0.00 0.00 3.67
84 85 2.897969 GTTCAGTCTAGAACAGGGACCA 59.102 50.000 0.00 0.00 45.53 4.02
85 86 3.596310 GTTCAGTCTAGAACAGGGACC 57.404 52.381 0.00 0.00 45.53 4.46
92 93 2.169330 AGTCCCGGTTCAGTCTAGAAC 58.831 52.381 0.00 0.00 45.50 3.01
93 94 2.599408 AGTCCCGGTTCAGTCTAGAA 57.401 50.000 0.00 0.00 0.00 2.10
94 95 3.726557 TTAGTCCCGGTTCAGTCTAGA 57.273 47.619 0.00 0.00 0.00 2.43
95 96 3.068307 CCATTAGTCCCGGTTCAGTCTAG 59.932 52.174 0.00 0.00 0.00 2.43
96 97 3.028850 CCATTAGTCCCGGTTCAGTCTA 58.971 50.000 0.00 0.00 0.00 2.59
97 98 1.831736 CCATTAGTCCCGGTTCAGTCT 59.168 52.381 0.00 0.00 0.00 3.24
98 99 1.134491 CCCATTAGTCCCGGTTCAGTC 60.134 57.143 0.00 0.00 0.00 3.51
99 100 0.909623 CCCATTAGTCCCGGTTCAGT 59.090 55.000 0.00 0.00 0.00 3.41
100 101 0.463833 GCCCATTAGTCCCGGTTCAG 60.464 60.000 0.00 0.00 0.00 3.02
101 102 0.912487 AGCCCATTAGTCCCGGTTCA 60.912 55.000 0.00 0.00 0.00 3.18
102 103 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
103 104 0.912487 TCAGCCCATTAGTCCCGGTT 60.912 55.000 0.00 0.00 0.00 4.44
104 105 1.306654 TCAGCCCATTAGTCCCGGT 60.307 57.895 0.00 0.00 0.00 5.28
105 106 1.146263 GTCAGCCCATTAGTCCCGG 59.854 63.158 0.00 0.00 0.00 5.73
106 107 1.146263 GGTCAGCCCATTAGTCCCG 59.854 63.158 0.00 0.00 0.00 5.14
120 121 4.974438 AAGGTCCAGGCCGGGTCA 62.974 66.667 22.25 0.00 34.36 4.02
121 122 3.647771 AAAGGTCCAGGCCGGGTC 61.648 66.667 22.25 16.31 34.36 4.46
122 123 3.966543 CAAAGGTCCAGGCCGGGT 61.967 66.667 22.25 0.00 34.36 5.28
123 124 3.920093 GACAAAGGTCCAGGCCGGG 62.920 68.421 17.03 17.03 38.12 5.73
124 125 2.359975 GACAAAGGTCCAGGCCGG 60.360 66.667 0.00 0.00 38.12 6.13
132 133 4.368565 AGTAGAAAAGGGGACAAAGGTC 57.631 45.455 0.00 0.00 43.55 3.85
133 134 4.912133 ACTAGTAGAAAAGGGGACAAAGGT 59.088 41.667 3.59 0.00 0.00 3.50
134 135 5.246307 CACTAGTAGAAAAGGGGACAAAGG 58.754 45.833 3.59 0.00 0.00 3.11
135 136 4.695928 GCACTAGTAGAAAAGGGGACAAAG 59.304 45.833 3.59 0.00 0.00 2.77
136 137 4.506095 GGCACTAGTAGAAAAGGGGACAAA 60.506 45.833 3.59 0.00 0.00 2.83
137 138 3.008704 GGCACTAGTAGAAAAGGGGACAA 59.991 47.826 3.59 0.00 0.00 3.18
138 139 2.570302 GGCACTAGTAGAAAAGGGGACA 59.430 50.000 3.59 0.00 0.00 4.02
139 140 2.838813 AGGCACTAGTAGAAAAGGGGAC 59.161 50.000 3.59 0.00 36.02 4.46
140 141 3.200958 AGGCACTAGTAGAAAAGGGGA 57.799 47.619 3.59 0.00 36.02 4.81
141 142 5.368989 CATTAGGCACTAGTAGAAAAGGGG 58.631 45.833 3.59 0.00 44.25 4.79
142 143 5.104485 ACCATTAGGCACTAGTAGAAAAGGG 60.104 44.000 3.59 2.39 44.25 3.95
143 144 5.817816 CACCATTAGGCACTAGTAGAAAAGG 59.182 44.000 3.59 0.00 44.25 3.11
144 145 6.640518 TCACCATTAGGCACTAGTAGAAAAG 58.359 40.000 3.59 0.00 44.25 2.27
145 146 6.614694 TCACCATTAGGCACTAGTAGAAAA 57.385 37.500 3.59 0.00 44.25 2.29
146 147 6.614694 TTCACCATTAGGCACTAGTAGAAA 57.385 37.500 3.59 0.00 44.25 2.52
147 148 6.614694 TTTCACCATTAGGCACTAGTAGAA 57.385 37.500 3.59 0.00 44.25 2.10
148 149 6.403878 GTTTTCACCATTAGGCACTAGTAGA 58.596 40.000 3.59 0.00 44.25 2.59
149 150 5.291128 CGTTTTCACCATTAGGCACTAGTAG 59.709 44.000 0.00 0.00 44.25 2.57
150 151 5.172934 CGTTTTCACCATTAGGCACTAGTA 58.827 41.667 0.00 0.00 44.25 1.82
151 152 4.000988 CGTTTTCACCATTAGGCACTAGT 58.999 43.478 0.00 0.00 44.25 2.57
152 153 3.374058 CCGTTTTCACCATTAGGCACTAG 59.626 47.826 0.00 0.00 44.25 2.57
153 154 3.008157 TCCGTTTTCACCATTAGGCACTA 59.992 43.478 0.00 0.00 41.75 2.74
154 155 2.159382 CCGTTTTCACCATTAGGCACT 58.841 47.619 0.00 0.00 46.37 4.40
155 156 2.156098 TCCGTTTTCACCATTAGGCAC 58.844 47.619 0.00 0.00 39.06 5.01
156 157 2.570415 TCCGTTTTCACCATTAGGCA 57.430 45.000 0.00 0.00 39.06 4.75
157 158 4.450082 AATTCCGTTTTCACCATTAGGC 57.550 40.909 0.00 0.00 39.06 3.93
158 159 6.995511 TCTAATTCCGTTTTCACCATTAGG 57.004 37.500 0.00 0.00 42.21 2.69
159 160 9.503427 GAAATCTAATTCCGTTTTCACCATTAG 57.497 33.333 0.00 0.00 0.00 1.73
160 161 8.178964 CGAAATCTAATTCCGTTTTCACCATTA 58.821 33.333 9.80 0.00 0.00 1.90
161 162 7.027161 CGAAATCTAATTCCGTTTTCACCATT 58.973 34.615 9.80 0.00 0.00 3.16
162 163 6.373216 TCGAAATCTAATTCCGTTTTCACCAT 59.627 34.615 0.00 0.00 0.00 3.55
163 164 5.701750 TCGAAATCTAATTCCGTTTTCACCA 59.298 36.000 0.00 0.00 0.00 4.17
202 203 9.406828 GATTCAAAAAGTCTTAAAAGCCGTAAT 57.593 29.630 0.00 0.00 0.00 1.89
236 237 2.233676 AGATCTTGTCCACACGTGCATA 59.766 45.455 17.22 0.00 0.00 3.14
287 288 0.250467 CTATTCGGCCACATCCCCTG 60.250 60.000 2.24 0.00 0.00 4.45
292 293 4.965119 AAGAAAACTATTCGGCCACATC 57.035 40.909 2.24 0.00 0.00 3.06
326 327 1.561076 TCATTGTGGCCAGCTGTCTAT 59.439 47.619 5.11 0.00 0.00 1.98
333 334 1.153706 GCATGTCATTGTGGCCAGC 60.154 57.895 5.11 0.00 0.00 4.85
356 357 4.131649 TGTGCGCACCACTATATAAAGT 57.868 40.909 35.72 0.00 44.92 2.66
365 366 0.457681 GTTGTTTTGTGCGCACCACT 60.458 50.000 35.72 0.00 44.92 4.00
375 376 1.337260 TGCGCTTGTTGGTTGTTTTGT 60.337 42.857 9.73 0.00 0.00 2.83
406 407 5.479375 TCCCTAATAATAAGGACGTGGCTAG 59.521 44.000 0.00 0.00 36.08 3.42
635 638 8.349983 GCTTTGTTCTGATAGTGTTCCTTTTAA 58.650 33.333 0.00 0.00 0.00 1.52
887 892 3.626670 CAGAGAAGAATCATCACCTTGGC 59.373 47.826 0.00 0.00 0.00 4.52
896 901 6.777782 AGTTCAAAGACCAGAGAAGAATCAT 58.222 36.000 0.00 0.00 0.00 2.45
909 914 3.418995 GGGGGAAGTTAGTTCAAAGACC 58.581 50.000 2.03 0.00 36.82 3.85
940 946 6.258287 TCAATTGCAAGGAAACACAATCTTTG 59.742 34.615 4.94 0.00 37.06 2.77
985 991 3.169908 TGTCACTGCTGTAGGGTTGATA 58.830 45.455 0.00 0.00 0.00 2.15
986 992 1.977854 TGTCACTGCTGTAGGGTTGAT 59.022 47.619 0.00 0.00 0.00 2.57
998 1004 2.498167 ACTGATGGTCTTTGTCACTGC 58.502 47.619 0.00 0.00 0.00 4.40
1016 1022 2.262423 GGTTGGACTCAAGCTCAACT 57.738 50.000 11.97 0.00 45.10 3.16
1039 1045 5.529430 TCACGGCTGAAACTTGAGAATTTTA 59.471 36.000 0.00 0.00 0.00 1.52
1099 1105 1.960689 ACTTGTTTTAGCACCGCCAAT 59.039 42.857 0.00 0.00 0.00 3.16
1138 1144 2.743664 CGAGTGAAACATGCATGAAGGA 59.256 45.455 32.75 11.01 41.43 3.36
1238 1244 1.417288 ATGCTCTCTCCTCCCCATGC 61.417 60.000 0.00 0.00 0.00 4.06
1241 1247 1.383664 CCATGCTCTCTCCTCCCCA 60.384 63.158 0.00 0.00 0.00 4.96
1252 1258 0.745845 AACGTCATGCTCCCATGCTC 60.746 55.000 0.00 0.00 46.69 4.26
1253 1259 0.745845 GAACGTCATGCTCCCATGCT 60.746 55.000 0.00 0.00 46.69 3.79
1273 1279 1.938926 GCTCTGTGTGCTCTTGAGTCC 60.939 57.143 0.00 0.00 0.00 3.85
1289 1295 2.294791 GTGCCATGTATCGAGTAGCTCT 59.705 50.000 0.00 0.00 0.00 4.09
1295 1301 1.277842 TGGTTGTGCCATGTATCGAGT 59.722 47.619 0.00 0.00 43.61 4.18
1360 1366 1.226773 GCCATGACATCGCAAAGGC 60.227 57.895 0.00 0.00 36.39 4.35
1490 1496 2.054232 TGTAGGCGAGGAAGTAGAGG 57.946 55.000 0.00 0.00 0.00 3.69
1507 1513 5.240623 TGGAGCTTGTTCGTCAAATTATTGT 59.759 36.000 0.00 0.00 37.79 2.71
1524 1530 2.039879 ACCCTTTTGACGTATGGAGCTT 59.960 45.455 0.00 0.00 0.00 3.74
1581 1587 1.494721 TCTATAGCTTGGGCCAAAGGG 59.505 52.381 21.84 10.07 39.73 3.95
1600 1606 2.457598 TGTGTACTCCCATGAGGTCTC 58.542 52.381 0.00 0.00 43.29 3.36
1601 1607 2.623418 TGTGTACTCCCATGAGGTCT 57.377 50.000 0.00 0.00 43.29 3.85
1631 1637 3.343941 TGGGAAGGTATGTTCTTTCCG 57.656 47.619 0.00 0.00 41.68 4.30
1666 1672 0.040067 CTCTTTGCCAAGTGGAACGC 60.040 55.000 0.18 0.00 45.86 4.84
1679 1685 2.468831 GCATCTAGGAGCGACTCTTTG 58.531 52.381 6.78 1.72 0.00 2.77
1691 1697 1.338337 AGGACGTGAATCGCATCTAGG 59.662 52.381 0.00 0.00 44.19 3.02
1725 1731 2.791655 GGGGGTTGAAGTTGAAGTAGG 58.208 52.381 0.00 0.00 0.00 3.18
1728 1734 0.549469 ACGGGGGTTGAAGTTGAAGT 59.451 50.000 0.00 0.00 0.00 3.01
1745 1751 1.257155 GCTATTTTTAGGTCGCCGACG 59.743 52.381 11.60 0.00 42.01 5.12
1855 1861 5.047731 TCTGTCACCTTCTCAGTCAAGTATG 60.048 44.000 0.00 0.00 0.00 2.39
1869 1875 7.176690 CCACTTAACCAAATAATCTGTCACCTT 59.823 37.037 0.00 0.00 0.00 3.50
2008 2014 0.039346 GTCTACTAATCCGAGCGCCC 60.039 60.000 2.29 0.00 0.00 6.13
2052 2058 7.615365 ACCTTGCATAATTTACTTCCTGATTCA 59.385 33.333 0.00 0.00 0.00 2.57
2061 2067 7.015195 ACAACAAGGACCTTGCATAATTTACTT 59.985 33.333 30.38 12.72 44.43 2.24
2182 2248 7.715265 AACAACAACAACAACAACAACAATA 57.285 28.000 0.00 0.00 0.00 1.90
2184 2250 7.715265 ATAACAACAACAACAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
2185 2251 7.224753 ACAATAACAACAACAACAACAACAACA 59.775 29.630 0.00 0.00 0.00 3.33
2186 2252 7.568433 ACAATAACAACAACAACAACAACAAC 58.432 30.769 0.00 0.00 0.00 3.32
2187 2253 7.715265 ACAATAACAACAACAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
2188 2254 7.224753 ACAACAATAACAACAACAACAACAACA 59.775 29.630 0.00 0.00 0.00 3.33
2189 2255 7.568433 ACAACAATAACAACAACAACAACAAC 58.432 30.769 0.00 0.00 0.00 3.32
2192 2258 6.305877 TCGACAACAATAACAACAACAACAAC 59.694 34.615 0.00 0.00 0.00 3.32
2207 2273 1.798223 CACCACATCGTCGACAACAAT 59.202 47.619 17.16 0.07 0.00 2.71
2218 2284 1.463056 ACAATAACGTGCACCACATCG 59.537 47.619 12.15 0.10 33.40 3.84
2270 2336 6.552445 AGTCCATCTTCTATTGTAGTTGCT 57.448 37.500 0.00 0.00 0.00 3.91
2271 2337 6.457528 GCAAGTCCATCTTCTATTGTAGTTGC 60.458 42.308 0.00 0.00 33.63 4.17
2272 2338 6.237942 CGCAAGTCCATCTTCTATTGTAGTTG 60.238 42.308 0.00 0.00 33.63 3.16
2273 2339 5.812642 CGCAAGTCCATCTTCTATTGTAGTT 59.187 40.000 0.00 0.00 33.63 2.24
2274 2340 5.352284 CGCAAGTCCATCTTCTATTGTAGT 58.648 41.667 0.00 0.00 33.63 2.73
2275 2341 4.747108 CCGCAAGTCCATCTTCTATTGTAG 59.253 45.833 0.00 0.00 33.63 2.74
2276 2342 4.161565 ACCGCAAGTCCATCTTCTATTGTA 59.838 41.667 0.00 0.00 33.63 2.41
2277 2343 3.055094 ACCGCAAGTCCATCTTCTATTGT 60.055 43.478 0.00 0.00 33.63 2.71
2278 2344 3.310774 CACCGCAAGTCCATCTTCTATTG 59.689 47.826 0.00 0.00 33.63 1.90
2279 2345 3.535561 CACCGCAAGTCCATCTTCTATT 58.464 45.455 0.00 0.00 33.63 1.73
2280 2346 2.743183 GCACCGCAAGTCCATCTTCTAT 60.743 50.000 0.00 0.00 33.63 1.98
2281 2347 1.405526 GCACCGCAAGTCCATCTTCTA 60.406 52.381 0.00 0.00 33.63 2.10
2282 2348 0.674895 GCACCGCAAGTCCATCTTCT 60.675 55.000 0.00 0.00 33.63 2.85
2283 2349 0.955428 TGCACCGCAAGTCCATCTTC 60.955 55.000 0.00 0.00 34.76 2.87
2284 2350 0.537143 TTGCACCGCAAGTCCATCTT 60.537 50.000 0.00 0.00 43.99 2.40
2285 2351 1.073025 TTGCACCGCAAGTCCATCT 59.927 52.632 0.00 0.00 43.99 2.90
2286 2352 3.667087 TTGCACCGCAAGTCCATC 58.333 55.556 0.00 0.00 43.99 3.51
2311 2377 5.441718 TCTGATGGCTCTGGACTATTTTT 57.558 39.130 0.00 0.00 0.00 1.94
2312 2378 5.131642 TGATCTGATGGCTCTGGACTATTTT 59.868 40.000 0.00 0.00 0.00 1.82
2313 2379 4.657504 TGATCTGATGGCTCTGGACTATTT 59.342 41.667 0.00 0.00 0.00 1.40
2314 2380 4.229639 TGATCTGATGGCTCTGGACTATT 58.770 43.478 0.00 0.00 0.00 1.73
2315 2381 3.854437 TGATCTGATGGCTCTGGACTAT 58.146 45.455 0.00 0.00 0.00 2.12
2316 2382 3.319031 TGATCTGATGGCTCTGGACTA 57.681 47.619 0.00 0.00 0.00 2.59
2317 2383 2.171568 TGATCTGATGGCTCTGGACT 57.828 50.000 0.00 0.00 0.00 3.85
2318 2384 3.831333 TCTATGATCTGATGGCTCTGGAC 59.169 47.826 0.00 0.00 0.00 4.02
2319 2385 4.123729 TCTATGATCTGATGGCTCTGGA 57.876 45.455 0.00 0.00 0.00 3.86
2320 2386 4.760878 CATCTATGATCTGATGGCTCTGG 58.239 47.826 12.76 0.00 37.13 3.86
2327 2393 4.876679 GTGCCATCCATCTATGATCTGATG 59.123 45.833 13.31 13.31 39.60 3.07
2328 2394 4.534897 TGTGCCATCCATCTATGATCTGAT 59.465 41.667 0.00 0.00 0.00 2.90
2329 2395 3.905591 TGTGCCATCCATCTATGATCTGA 59.094 43.478 0.00 0.00 0.00 3.27
2330 2396 4.254492 CTGTGCCATCCATCTATGATCTG 58.746 47.826 0.00 0.00 0.00 2.90
2331 2397 3.263681 CCTGTGCCATCCATCTATGATCT 59.736 47.826 0.00 0.00 0.00 2.75
2332 2398 3.008813 ACCTGTGCCATCCATCTATGATC 59.991 47.826 0.00 0.00 0.00 2.92
2333 2399 2.984604 ACCTGTGCCATCCATCTATGAT 59.015 45.455 0.00 0.00 0.00 2.45
2334 2400 2.411583 ACCTGTGCCATCCATCTATGA 58.588 47.619 0.00 0.00 0.00 2.15
2335 2401 2.945080 ACCTGTGCCATCCATCTATG 57.055 50.000 0.00 0.00 0.00 2.23
2336 2402 3.051581 AGAACCTGTGCCATCCATCTAT 58.948 45.455 0.00 0.00 0.00 1.98
2337 2403 2.481441 AGAACCTGTGCCATCCATCTA 58.519 47.619 0.00 0.00 0.00 1.98
2338 2404 1.293062 AGAACCTGTGCCATCCATCT 58.707 50.000 0.00 0.00 0.00 2.90
2339 2405 1.747355 CAAGAACCTGTGCCATCCATC 59.253 52.381 0.00 0.00 0.00 3.51
2340 2406 1.617804 CCAAGAACCTGTGCCATCCAT 60.618 52.381 0.00 0.00 0.00 3.41
2341 2407 0.251297 CCAAGAACCTGTGCCATCCA 60.251 55.000 0.00 0.00 0.00 3.41
2342 2408 0.967380 CCCAAGAACCTGTGCCATCC 60.967 60.000 0.00 0.00 0.00 3.51
2343 2409 0.967380 CCCCAAGAACCTGTGCCATC 60.967 60.000 0.00 0.00 0.00 3.51
2344 2410 1.077265 CCCCAAGAACCTGTGCCAT 59.923 57.895 0.00 0.00 0.00 4.40
2345 2411 2.067932 CTCCCCAAGAACCTGTGCCA 62.068 60.000 0.00 0.00 0.00 4.92
2346 2412 1.303643 CTCCCCAAGAACCTGTGCC 60.304 63.158 0.00 0.00 0.00 5.01
2347 2413 1.303643 CCTCCCCAAGAACCTGTGC 60.304 63.158 0.00 0.00 0.00 4.57
2348 2414 1.133809 TCCCTCCCCAAGAACCTGTG 61.134 60.000 0.00 0.00 0.00 3.66
2349 2415 0.178831 ATCCCTCCCCAAGAACCTGT 60.179 55.000 0.00 0.00 0.00 4.00
2350 2416 0.548510 GATCCCTCCCCAAGAACCTG 59.451 60.000 0.00 0.00 0.00 4.00
2351 2417 0.423544 AGATCCCTCCCCAAGAACCT 59.576 55.000 0.00 0.00 0.00 3.50
2352 2418 0.840617 GAGATCCCTCCCCAAGAACC 59.159 60.000 0.00 0.00 33.30 3.62
2353 2419 1.488393 CTGAGATCCCTCCCCAAGAAC 59.512 57.143 0.00 0.00 38.66 3.01
2354 2420 1.626350 CCTGAGATCCCTCCCCAAGAA 60.626 57.143 0.00 0.00 38.66 2.52
2355 2421 0.030705 CCTGAGATCCCTCCCCAAGA 60.031 60.000 0.00 0.00 38.66 3.02
2356 2422 1.704007 GCCTGAGATCCCTCCCCAAG 61.704 65.000 0.00 0.00 38.66 3.61
2357 2423 1.694169 GCCTGAGATCCCTCCCCAA 60.694 63.158 0.00 0.00 38.66 4.12
2358 2424 2.040464 GCCTGAGATCCCTCCCCA 60.040 66.667 0.00 0.00 38.66 4.96
2359 2425 2.851588 GGCCTGAGATCCCTCCCC 60.852 72.222 0.00 0.00 38.66 4.81
2360 2426 2.040464 TGGCCTGAGATCCCTCCC 60.040 66.667 3.32 0.00 38.66 4.30
2361 2427 0.985490 AAGTGGCCTGAGATCCCTCC 60.985 60.000 3.32 0.00 38.66 4.30
2362 2428 1.794714 TAAGTGGCCTGAGATCCCTC 58.205 55.000 3.32 0.00 39.86 4.30
2363 2429 2.270434 TTAAGTGGCCTGAGATCCCT 57.730 50.000 3.32 0.00 0.00 4.20
2364 2430 3.217626 CATTTAAGTGGCCTGAGATCCC 58.782 50.000 3.32 0.00 0.00 3.85
2365 2431 3.117888 TCCATTTAAGTGGCCTGAGATCC 60.118 47.826 12.03 0.00 39.19 3.36
2366 2432 3.879892 GTCCATTTAAGTGGCCTGAGATC 59.120 47.826 12.03 0.00 39.19 2.75
2367 2433 3.266772 TGTCCATTTAAGTGGCCTGAGAT 59.733 43.478 12.03 0.00 39.19 2.75
2368 2434 2.642311 TGTCCATTTAAGTGGCCTGAGA 59.358 45.455 12.03 0.00 39.19 3.27
2369 2435 3.071874 TGTCCATTTAAGTGGCCTGAG 57.928 47.619 12.03 0.00 39.19 3.35
2370 2436 3.737559 ATGTCCATTTAAGTGGCCTGA 57.262 42.857 12.03 0.00 39.19 3.86
2371 2437 4.806640 AAATGTCCATTTAAGTGGCCTG 57.193 40.909 12.03 0.00 39.08 4.85
2372 2438 6.667414 TCATAAAATGTCCATTTAAGTGGCCT 59.333 34.615 12.03 0.00 39.88 5.19
2373 2439 6.872920 TCATAAAATGTCCATTTAAGTGGCC 58.127 36.000 12.03 1.31 39.88 5.36
2374 2440 8.770438 TTTCATAAAATGTCCATTTAAGTGGC 57.230 30.769 12.03 8.05 39.88 5.01
2377 2443 9.719355 GGGTTTTCATAAAATGTCCATTTAAGT 57.281 29.630 5.73 0.00 39.88 2.24
2378 2444 9.161629 GGGGTTTTCATAAAATGTCCATTTAAG 57.838 33.333 5.73 0.60 39.88 1.85
2379 2445 8.103935 GGGGGTTTTCATAAAATGTCCATTTAA 58.896 33.333 5.73 0.00 39.88 1.52
2380 2446 7.625469 GGGGGTTTTCATAAAATGTCCATTTA 58.375 34.615 5.73 0.00 39.88 1.40
2381 2447 6.480763 GGGGGTTTTCATAAAATGTCCATTT 58.519 36.000 0.00 0.00 42.35 2.32
2382 2448 6.061022 GGGGGTTTTCATAAAATGTCCATT 57.939 37.500 0.00 0.00 32.22 3.16
2383 2449 5.692115 GGGGGTTTTCATAAAATGTCCAT 57.308 39.130 0.00 0.00 32.22 3.41
2402 2468 7.691993 ATTATATATAACTGCCACTAGGGGG 57.308 40.000 14.41 5.69 37.04 5.40
2403 2469 9.656323 TCTATTATATATAACTGCCACTAGGGG 57.344 37.037 6.68 6.68 37.04 4.79
2420 2486 9.338622 GGTGGTTACTGCAAAGTTCTATTATAT 57.661 33.333 0.00 0.00 0.00 0.86
2421 2487 8.545472 AGGTGGTTACTGCAAAGTTCTATTATA 58.455 33.333 0.00 0.00 0.00 0.98
2422 2488 7.402862 AGGTGGTTACTGCAAAGTTCTATTAT 58.597 34.615 0.00 0.00 0.00 1.28
2423 2489 6.775708 AGGTGGTTACTGCAAAGTTCTATTA 58.224 36.000 0.00 0.00 0.00 0.98
2424 2490 5.631119 AGGTGGTTACTGCAAAGTTCTATT 58.369 37.500 0.00 0.00 0.00 1.73
2425 2491 5.221843 TGAGGTGGTTACTGCAAAGTTCTAT 60.222 40.000 0.00 0.00 0.00 1.98
2426 2492 4.101898 TGAGGTGGTTACTGCAAAGTTCTA 59.898 41.667 0.00 0.00 0.00 2.10
2427 2493 3.118038 TGAGGTGGTTACTGCAAAGTTCT 60.118 43.478 0.00 0.00 0.00 3.01
2428 2494 3.211045 TGAGGTGGTTACTGCAAAGTTC 58.789 45.455 0.00 0.00 0.00 3.01
2429 2495 3.290948 TGAGGTGGTTACTGCAAAGTT 57.709 42.857 0.00 0.00 0.00 2.66
2430 2496 3.214328 CTTGAGGTGGTTACTGCAAAGT 58.786 45.455 0.00 0.00 0.00 2.66
2431 2497 3.214328 ACTTGAGGTGGTTACTGCAAAG 58.786 45.455 0.00 0.00 0.00 2.77
2432 2498 3.290948 ACTTGAGGTGGTTACTGCAAA 57.709 42.857 0.00 0.00 0.00 3.68
2433 2499 3.495453 GGTACTTGAGGTGGTTACTGCAA 60.495 47.826 0.00 0.00 0.00 4.08
2434 2500 2.038033 GGTACTTGAGGTGGTTACTGCA 59.962 50.000 0.00 0.00 0.00 4.41
2435 2501 2.302157 AGGTACTTGAGGTGGTTACTGC 59.698 50.000 0.00 0.00 27.25 4.40
2436 2502 3.576982 TGAGGTACTTGAGGTGGTTACTG 59.423 47.826 0.00 0.00 41.55 2.74
2437 2503 3.853207 TGAGGTACTTGAGGTGGTTACT 58.147 45.455 0.00 0.00 41.55 2.24
2438 2504 4.466726 AGATGAGGTACTTGAGGTGGTTAC 59.533 45.833 0.00 0.00 41.55 2.50
2439 2505 4.684724 AGATGAGGTACTTGAGGTGGTTA 58.315 43.478 0.00 0.00 41.55 2.85
2440 2506 3.515901 GAGATGAGGTACTTGAGGTGGTT 59.484 47.826 0.00 0.00 41.55 3.67
2441 2507 3.100671 GAGATGAGGTACTTGAGGTGGT 58.899 50.000 0.00 0.00 41.55 4.16
2442 2508 2.432510 GGAGATGAGGTACTTGAGGTGG 59.567 54.545 0.00 0.00 41.55 4.61
2443 2509 2.432510 GGGAGATGAGGTACTTGAGGTG 59.567 54.545 0.00 0.00 41.55 4.00
2444 2510 2.316372 AGGGAGATGAGGTACTTGAGGT 59.684 50.000 0.00 0.00 41.55 3.85
2445 2511 2.962421 GAGGGAGATGAGGTACTTGAGG 59.038 54.545 0.00 0.00 41.55 3.86
2446 2512 3.888930 GAGAGGGAGATGAGGTACTTGAG 59.111 52.174 0.00 0.00 41.55 3.02
2447 2513 3.373220 GGAGAGGGAGATGAGGTACTTGA 60.373 52.174 0.00 0.00 41.55 3.02
2448 2514 2.962421 GGAGAGGGAGATGAGGTACTTG 59.038 54.545 0.00 0.00 41.55 3.16
2449 2515 2.587777 TGGAGAGGGAGATGAGGTACTT 59.412 50.000 0.00 0.00 41.55 2.24
2451 2517 2.757894 TGGAGAGGGAGATGAGGTAC 57.242 55.000 0.00 0.00 0.00 3.34
2452 2518 3.969976 CAATTGGAGAGGGAGATGAGGTA 59.030 47.826 0.00 0.00 0.00 3.08
2453 2519 2.776536 CAATTGGAGAGGGAGATGAGGT 59.223 50.000 0.00 0.00 0.00 3.85
2454 2520 2.776536 ACAATTGGAGAGGGAGATGAGG 59.223 50.000 10.83 0.00 0.00 3.86
2455 2521 4.163839 AGAACAATTGGAGAGGGAGATGAG 59.836 45.833 10.83 0.00 0.00 2.90
2456 2522 4.107072 AGAACAATTGGAGAGGGAGATGA 58.893 43.478 10.83 0.00 0.00 2.92
2457 2523 4.163839 AGAGAACAATTGGAGAGGGAGATG 59.836 45.833 10.83 0.00 0.00 2.90
2458 2524 4.369872 AGAGAACAATTGGAGAGGGAGAT 58.630 43.478 10.83 0.00 0.00 2.75
2459 2525 3.772025 GAGAGAACAATTGGAGAGGGAGA 59.228 47.826 10.83 0.00 0.00 3.71
2460 2526 3.118445 GGAGAGAACAATTGGAGAGGGAG 60.118 52.174 10.83 0.00 0.00 4.30
2461 2527 2.840651 GGAGAGAACAATTGGAGAGGGA 59.159 50.000 10.83 0.00 0.00 4.20
2462 2528 2.573462 TGGAGAGAACAATTGGAGAGGG 59.427 50.000 10.83 0.00 0.00 4.30
2463 2529 3.871485 CTGGAGAGAACAATTGGAGAGG 58.129 50.000 10.83 0.00 0.00 3.69
2464 2530 3.269178 GCTGGAGAGAACAATTGGAGAG 58.731 50.000 10.83 0.00 0.00 3.20
2465 2531 2.639347 TGCTGGAGAGAACAATTGGAGA 59.361 45.455 10.83 0.00 0.00 3.71
2473 2539 2.957402 AATGGTTGCTGGAGAGAACA 57.043 45.000 0.00 0.00 0.00 3.18
2474 2540 4.072131 TGTAAATGGTTGCTGGAGAGAAC 58.928 43.478 0.00 0.00 0.00 3.01
2475 2541 4.365514 TGTAAATGGTTGCTGGAGAGAA 57.634 40.909 0.00 0.00 0.00 2.87
2479 2545 3.009723 ACGATGTAAATGGTTGCTGGAG 58.990 45.455 0.00 0.00 0.00 3.86
2497 2563 0.249447 GGGCATCATCGATGTGACGA 60.249 55.000 24.09 5.74 46.04 4.20
2498 2564 1.224069 GGGGCATCATCGATGTGACG 61.224 60.000 24.09 12.31 41.60 4.35
2499 2565 0.886490 GGGGGCATCATCGATGTGAC 60.886 60.000 24.09 21.45 41.60 3.67
2500 2566 1.344191 TGGGGGCATCATCGATGTGA 61.344 55.000 24.09 8.30 41.60 3.58
2579 2650 6.619744 TGTTGTACAATCCACTAATGCAATG 58.380 36.000 12.26 0.00 0.00 2.82
2581 2652 6.432472 TGATGTTGTACAATCCACTAATGCAA 59.568 34.615 12.26 0.00 0.00 4.08
2590 2661 8.620416 GCATAATTAGTGATGTTGTACAATCCA 58.380 33.333 12.26 6.47 0.00 3.41
2595 2666 7.772757 TCCATGCATAATTAGTGATGTTGTACA 59.227 33.333 0.00 0.00 0.00 2.90
2596 2667 8.153479 TCCATGCATAATTAGTGATGTTGTAC 57.847 34.615 0.00 0.00 0.00 2.90
2597 2668 8.744568 TTCCATGCATAATTAGTGATGTTGTA 57.255 30.769 0.00 0.00 0.00 2.41
2598 2669 7.340232 ACTTCCATGCATAATTAGTGATGTTGT 59.660 33.333 0.00 0.00 0.00 3.32
2599 2670 7.709947 ACTTCCATGCATAATTAGTGATGTTG 58.290 34.615 0.00 0.00 0.00 3.33
2601 2672 7.886629 AACTTCCATGCATAATTAGTGATGT 57.113 32.000 0.00 0.00 0.00 3.06
2602 2673 8.192774 ACAAACTTCCATGCATAATTAGTGATG 58.807 33.333 0.00 6.84 0.00 3.07
2603 2674 8.297470 ACAAACTTCCATGCATAATTAGTGAT 57.703 30.769 0.00 0.00 0.00 3.06
2604 2675 7.701539 ACAAACTTCCATGCATAATTAGTGA 57.298 32.000 0.00 0.00 0.00 3.41
2605 2676 8.458052 TGTACAAACTTCCATGCATAATTAGTG 58.542 33.333 0.00 0.00 0.00 2.74
2608 2679 8.965819 ACATGTACAAACTTCCATGCATAATTA 58.034 29.630 0.00 0.00 38.56 1.40
2609 2680 7.839907 ACATGTACAAACTTCCATGCATAATT 58.160 30.769 0.00 0.00 38.56 1.40
2611 2682 6.832520 ACATGTACAAACTTCCATGCATAA 57.167 33.333 0.00 0.00 38.56 1.90
2612 2683 6.832520 AACATGTACAAACTTCCATGCATA 57.167 33.333 0.00 0.00 38.56 3.14
2624 3054 8.635877 AATTTTTAGCGACAAACATGTACAAA 57.364 26.923 0.00 0.00 0.00 2.83
2662 3092 9.922305 GCTTGAAGTGTATCTCATAATTGTTAC 57.078 33.333 0.00 0.00 0.00 2.50
2663 3093 9.665719 TGCTTGAAGTGTATCTCATAATTGTTA 57.334 29.630 0.00 0.00 0.00 2.41
2664 3094 8.565896 TGCTTGAAGTGTATCTCATAATTGTT 57.434 30.769 0.00 0.00 0.00 2.83
2708 3139 4.792521 ATGCGAGTCTCTTGTTCTAGTT 57.207 40.909 0.00 0.00 0.00 2.24
2773 3204 8.922058 TTTATAGTTAAGAGTTAGTCTTGCCG 57.078 34.615 12.17 0.00 45.71 5.69
2857 3288 2.290323 GGAAAAGCTAGAGCCTCAACCA 60.290 50.000 0.00 0.00 43.38 3.67
2858 3289 2.360844 GGAAAAGCTAGAGCCTCAACC 58.639 52.381 0.00 0.00 43.38 3.77
2859 3290 2.026729 AGGGAAAAGCTAGAGCCTCAAC 60.027 50.000 0.00 0.00 43.38 3.18
2860 3291 2.237392 GAGGGAAAAGCTAGAGCCTCAA 59.763 50.000 0.00 0.00 43.38 3.02
2861 3292 1.834263 GAGGGAAAAGCTAGAGCCTCA 59.166 52.381 0.00 0.00 43.38 3.86
2862 3293 1.140052 GGAGGGAAAAGCTAGAGCCTC 59.860 57.143 0.00 0.00 43.38 4.70
2863 3294 1.208706 GGAGGGAAAAGCTAGAGCCT 58.791 55.000 0.00 0.00 43.38 4.58
2864 3295 0.912486 TGGAGGGAAAAGCTAGAGCC 59.088 55.000 0.00 0.00 43.38 4.70
2865 3296 1.557371 ACTGGAGGGAAAAGCTAGAGC 59.443 52.381 0.00 0.00 42.49 4.09
2866 3297 3.517500 AGAACTGGAGGGAAAAGCTAGAG 59.482 47.826 0.00 0.00 0.00 2.43
2867 3298 3.261897 CAGAACTGGAGGGAAAAGCTAGA 59.738 47.826 0.00 0.00 0.00 2.43
2868 3299 3.604582 CAGAACTGGAGGGAAAAGCTAG 58.395 50.000 0.00 0.00 0.00 3.42
2869 3300 2.290323 GCAGAACTGGAGGGAAAAGCTA 60.290 50.000 3.99 0.00 0.00 3.32
2870 3301 1.546548 GCAGAACTGGAGGGAAAAGCT 60.547 52.381 3.99 0.00 0.00 3.74
2871 3302 0.884514 GCAGAACTGGAGGGAAAAGC 59.115 55.000 3.99 0.00 0.00 3.51
2872 3303 2.157738 CAGCAGAACTGGAGGGAAAAG 58.842 52.381 3.99 0.00 43.19 2.27
2873 3304 2.276732 CAGCAGAACTGGAGGGAAAA 57.723 50.000 3.99 0.00 43.19 2.29
2900 3331 2.097629 CCAGCACATGAAGCTTGATGAG 59.902 50.000 29.28 22.82 41.14 2.90
2901 3332 2.089201 CCAGCACATGAAGCTTGATGA 58.911 47.619 29.28 0.00 41.14 2.92
2902 3333 1.134367 CCCAGCACATGAAGCTTGATG 59.866 52.381 22.36 22.36 41.14 3.07
2903 3334 1.005097 TCCCAGCACATGAAGCTTGAT 59.995 47.619 2.10 0.00 41.14 2.57
2904 3335 0.401356 TCCCAGCACATGAAGCTTGA 59.599 50.000 2.10 0.00 41.14 3.02
2905 3336 0.809385 CTCCCAGCACATGAAGCTTG 59.191 55.000 2.10 10.67 41.14 4.01
2906 3337 0.694771 TCTCCCAGCACATGAAGCTT 59.305 50.000 13.37 0.00 41.14 3.74
2907 3338 0.694771 TTCTCCCAGCACATGAAGCT 59.305 50.000 10.82 10.82 44.62 3.74
2908 3339 1.538047 TTTCTCCCAGCACATGAAGC 58.462 50.000 0.00 2.85 0.00 3.86
2909 3340 3.128242 GTGATTTCTCCCAGCACATGAAG 59.872 47.826 0.00 0.00 0.00 3.02
2910 3341 3.084039 GTGATTTCTCCCAGCACATGAA 58.916 45.455 0.00 0.00 0.00 2.57
2911 3342 2.040145 TGTGATTTCTCCCAGCACATGA 59.960 45.455 0.00 0.00 34.85 3.07
2912 3343 2.439409 TGTGATTTCTCCCAGCACATG 58.561 47.619 0.00 0.00 34.85 3.21
2913 3344 2.885135 TGTGATTTCTCCCAGCACAT 57.115 45.000 0.00 0.00 34.85 3.21
2914 3345 2.040145 TGATGTGATTTCTCCCAGCACA 59.960 45.455 0.00 0.00 42.79 4.57
2915 3346 2.715046 TGATGTGATTTCTCCCAGCAC 58.285 47.619 0.00 0.00 0.00 4.40
2916 3347 3.438216 TTGATGTGATTTCTCCCAGCA 57.562 42.857 0.00 0.00 0.00 4.41
2917 3348 3.507233 TGTTTGATGTGATTTCTCCCAGC 59.493 43.478 0.00 0.00 0.00 4.85
2918 3349 5.710513 TTGTTTGATGTGATTTCTCCCAG 57.289 39.130 0.00 0.00 0.00 4.45
2919 3350 5.362143 TGTTTGTTTGATGTGATTTCTCCCA 59.638 36.000 0.00 0.00 0.00 4.37
2920 3351 5.691754 GTGTTTGTTTGATGTGATTTCTCCC 59.308 40.000 0.00 0.00 0.00 4.30
2921 3352 5.399301 CGTGTTTGTTTGATGTGATTTCTCC 59.601 40.000 0.00 0.00 0.00 3.71
2922 3353 6.198687 TCGTGTTTGTTTGATGTGATTTCTC 58.801 36.000 0.00 0.00 0.00 2.87
2923 3354 6.130298 TCGTGTTTGTTTGATGTGATTTCT 57.870 33.333 0.00 0.00 0.00 2.52
2924 3355 6.991485 ATCGTGTTTGTTTGATGTGATTTC 57.009 33.333 0.00 0.00 0.00 2.17
2925 3356 6.977502 TGAATCGTGTTTGTTTGATGTGATTT 59.022 30.769 0.00 0.00 0.00 2.17
2926 3357 6.502652 TGAATCGTGTTTGTTTGATGTGATT 58.497 32.000 0.00 0.00 0.00 2.57
2927 3358 6.070897 TGAATCGTGTTTGTTTGATGTGAT 57.929 33.333 0.00 0.00 0.00 3.06
2928 3359 5.065859 ACTGAATCGTGTTTGTTTGATGTGA 59.934 36.000 0.00 0.00 0.00 3.58
2929 3360 5.273170 ACTGAATCGTGTTTGTTTGATGTG 58.727 37.500 0.00 0.00 0.00 3.21
2930 3361 5.499139 ACTGAATCGTGTTTGTTTGATGT 57.501 34.783 0.00 0.00 0.00 3.06
2931 3362 7.357532 GCTTAACTGAATCGTGTTTGTTTGATG 60.358 37.037 0.00 0.00 0.00 3.07
2932 3363 6.636850 GCTTAACTGAATCGTGTTTGTTTGAT 59.363 34.615 0.00 0.00 0.00 2.57
2933 3364 5.968848 GCTTAACTGAATCGTGTTTGTTTGA 59.031 36.000 0.00 0.00 0.00 2.69
2934 3365 5.741510 TGCTTAACTGAATCGTGTTTGTTTG 59.258 36.000 0.00 0.00 0.00 2.93
2935 3366 5.741982 GTGCTTAACTGAATCGTGTTTGTTT 59.258 36.000 0.00 0.00 0.00 2.83
2936 3367 5.163703 TGTGCTTAACTGAATCGTGTTTGTT 60.164 36.000 0.00 0.00 0.00 2.83
2937 3368 4.334203 TGTGCTTAACTGAATCGTGTTTGT 59.666 37.500 0.00 0.00 0.00 2.83
2938 3369 4.843147 TGTGCTTAACTGAATCGTGTTTG 58.157 39.130 0.00 0.00 0.00 2.93
2939 3370 5.008613 ACATGTGCTTAACTGAATCGTGTTT 59.991 36.000 0.00 0.00 0.00 2.83
2940 3371 4.515191 ACATGTGCTTAACTGAATCGTGTT 59.485 37.500 0.00 0.00 0.00 3.32
2941 3372 4.065088 ACATGTGCTTAACTGAATCGTGT 58.935 39.130 0.00 0.00 0.00 4.49
2942 3373 4.668576 ACATGTGCTTAACTGAATCGTG 57.331 40.909 0.00 0.00 0.00 4.35
2943 3374 5.874810 ACATACATGTGCTTAACTGAATCGT 59.125 36.000 9.11 0.00 40.03 3.73
2944 3375 6.349973 ACATACATGTGCTTAACTGAATCG 57.650 37.500 9.11 0.00 40.03 3.34
2958 3389 2.754552 GCATCCACCAACACATACATGT 59.245 45.455 2.69 2.69 42.84 3.21
2959 3390 3.018856 AGCATCCACCAACACATACATG 58.981 45.455 0.00 0.00 0.00 3.21
2960 3391 3.370840 AGCATCCACCAACACATACAT 57.629 42.857 0.00 0.00 0.00 2.29
2961 3392 2.877097 AGCATCCACCAACACATACA 57.123 45.000 0.00 0.00 0.00 2.29
2962 3393 4.457603 TGTTAAGCATCCACCAACACATAC 59.542 41.667 0.00 0.00 0.00 2.39
2963 3394 4.657013 TGTTAAGCATCCACCAACACATA 58.343 39.130 0.00 0.00 0.00 2.29
2964 3395 3.495331 TGTTAAGCATCCACCAACACAT 58.505 40.909 0.00 0.00 0.00 3.21
2965 3396 2.937519 TGTTAAGCATCCACCAACACA 58.062 42.857 0.00 0.00 0.00 3.72
2966 3397 4.314740 TTTGTTAAGCATCCACCAACAC 57.685 40.909 0.00 0.00 0.00 3.32
2967 3398 5.543507 ATTTTGTTAAGCATCCACCAACA 57.456 34.783 0.00 0.00 0.00 3.33
2968 3399 8.546597 AATTATTTTGTTAAGCATCCACCAAC 57.453 30.769 0.00 0.00 0.00 3.77
2995 3426 8.437742 CGCAAGAATTTATCTGCAAGAAAATTT 58.562 29.630 11.60 0.00 45.98 1.82
2996 3427 7.956558 CGCAAGAATTTATCTGCAAGAAAATT 58.043 30.769 10.61 10.61 45.98 1.82
2997 3428 7.515957 CGCAAGAATTTATCTGCAAGAAAAT 57.484 32.000 0.00 0.00 45.98 1.82
2998 3429 6.932901 CGCAAGAATTTATCTGCAAGAAAA 57.067 33.333 0.00 0.00 45.98 2.29
3016 3447 1.533625 TGTTCCCTTGGAATCGCAAG 58.466 50.000 0.00 5.01 44.04 4.01
3017 3448 1.988293 TTGTTCCCTTGGAATCGCAA 58.012 45.000 0.00 0.00 44.04 4.85
3018 3449 2.214376 ATTGTTCCCTTGGAATCGCA 57.786 45.000 0.00 0.00 44.04 5.10
3019 3450 4.712122 TTAATTGTTCCCTTGGAATCGC 57.288 40.909 0.00 0.00 44.04 4.58
3020 3451 9.816354 ATAATTTTAATTGTTCCCTTGGAATCG 57.184 29.630 0.00 0.00 44.04 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.