Multiple sequence alignment - TraesCS1A01G336100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G336100 chr1A 100.000 5122 0 0 1 5122 522963641 522968762 0.000000e+00 9459.0
1 TraesCS1A01G336100 chr1A 94.118 51 3 0 4261 4311 522967857 522967907 1.530000e-10 78.7
2 TraesCS1A01G336100 chr1A 94.118 51 3 0 4217 4267 522967901 522967951 1.530000e-10 78.7
3 TraesCS1A01G336100 chr1B 87.126 2672 189 75 1371 3960 579937606 579940204 0.000000e+00 2885.0
4 TraesCS1A01G336100 chr1B 82.054 808 52 48 580 1341 579936787 579937547 2.040000e-168 603.0
5 TraesCS1A01G336100 chr1B 81.346 713 60 39 126 832 579929252 579929897 3.540000e-141 512.0
6 TraesCS1A01G336100 chr1B 88.783 419 26 14 4710 5122 579940530 579940933 1.280000e-135 494.0
7 TraesCS1A01G336100 chr1B 84.983 293 25 11 4372 4645 579940321 579940613 3.910000e-71 279.0
8 TraesCS1A01G336100 chr1D 90.587 2114 92 39 2214 4267 427628056 427630122 0.000000e+00 2702.0
9 TraesCS1A01G336100 chr1D 86.581 1550 84 50 119 1614 427626378 427627857 0.000000e+00 1596.0
10 TraesCS1A01G336100 chr1D 82.008 478 30 24 4350 4804 427630311 427630755 6.310000e-94 355.0
11 TraesCS1A01G336100 chr1D 95.139 144 4 1 2061 2201 427627872 427628015 1.860000e-54 224.0
12 TraesCS1A01G336100 chr1D 83.598 189 18 5 4897 5084 427630764 427630940 1.140000e-36 165.0
13 TraesCS1A01G336100 chr1D 98.824 85 1 0 4708 4792 427630521 427630605 8.880000e-33 152.0
14 TraesCS1A01G336100 chr1D 94.505 91 5 0 4711 4801 15307981 15307891 1.920000e-29 141.0
15 TraesCS1A01G336100 chr1D 95.238 84 3 1 4263 4345 427630073 427630156 1.160000e-26 132.0
16 TraesCS1A01G336100 chr6B 91.402 1384 78 19 1638 2997 157886906 157885540 0.000000e+00 1858.0
17 TraesCS1A01G336100 chr6B 90.614 1385 87 22 1638 2997 687972138 687970772 0.000000e+00 1797.0
18 TraesCS1A01G336100 chr6B 90.542 1385 88 22 1638 2997 687996253 687994887 0.000000e+00 1792.0
19 TraesCS1A01G336100 chr2B 90.896 1384 86 16 1638 2997 560723482 560724849 0.000000e+00 1821.0
20 TraesCS1A01G336100 chr7D 95.050 202 8 2 2056 2255 1943239 1943440 2.980000e-82 316.0
21 TraesCS1A01G336100 chr7D 96.000 50 2 0 2781 2830 1943698 1943747 1.180000e-11 82.4
22 TraesCS1A01G336100 chr5A 97.959 98 1 1 4559 4656 606890335 606890431 8.820000e-38 169.0
23 TraesCS1A01G336100 chr5A 97.895 95 0 2 4710 4802 106146021 106145927 4.100000e-36 163.0
24 TraesCS1A01G336100 chr5A 97.802 91 1 1 4558 4647 338577765 338577855 6.870000e-34 156.0
25 TraesCS1A01G336100 chr5A 98.039 51 0 1 4753 4802 106145865 106145815 2.540000e-13 87.9
26 TraesCS1A01G336100 chr5A 92.982 57 4 0 3337 3393 624720491 624720547 3.290000e-12 84.2
27 TraesCS1A01G336100 chr5D 96.939 98 2 1 4559 4656 486160697 486160793 4.100000e-36 163.0
28 TraesCS1A01G336100 chr5D 97.778 90 2 0 4708 4797 486160698 486160787 6.870000e-34 156.0
29 TraesCS1A01G336100 chr5D 83.721 86 12 2 3337 3421 241423447 241423531 4.250000e-11 80.5
30 TraesCS1A01G336100 chr5D 82.716 81 11 3 23 102 399145072 399144994 9.200000e-08 69.4
31 TraesCS1A01G336100 chr3B 97.778 90 2 0 4710 4799 526684662 526684573 6.870000e-34 156.0
32 TraesCS1A01G336100 chr3B 97.753 89 2 0 4562 4650 526684663 526684575 2.470000e-33 154.0
33 TraesCS1A01G336100 chr3B 96.739 92 2 1 4565 4655 551922848 551922757 8.880000e-33 152.0
34 TraesCS1A01G336100 chr3B 94.505 91 4 1 4712 4801 551922848 551922758 6.920000e-29 139.0
35 TraesCS1A01G336100 chr3D 95.833 96 2 2 4706 4800 400786695 400786601 2.470000e-33 154.0
36 TraesCS1A01G336100 chr2D 98.837 86 1 0 4714 4799 409599420 409599335 2.470000e-33 154.0
37 TraesCS1A01G336100 chr2A 98.837 86 1 0 4714 4799 578159749 578159664 2.470000e-33 154.0
38 TraesCS1A01G336100 chr6A 95.789 95 2 2 4562 4656 29022954 29022862 8.880000e-33 152.0
39 TraesCS1A01G336100 chr5B 94.059 101 4 2 4560 4659 575518826 575518727 8.880000e-33 152.0
40 TraesCS1A01G336100 chr5B 98.765 81 0 1 4720 4799 106959571 106959651 5.350000e-30 143.0
41 TraesCS1A01G336100 chr4A 83.041 171 19 2 2669 2830 742460394 742460563 4.130000e-31 147.0
42 TraesCS1A01G336100 chr4A 95.455 88 4 0 4715 4802 680390396 680390309 1.920000e-29 141.0
43 TraesCS1A01G336100 chr4A 77.848 158 22 10 3234 3389 673161946 673161800 9.140000e-13 86.1
44 TraesCS1A01G336100 chr3A 95.402 87 4 0 4711 4797 564558741 564558827 6.920000e-29 139.0
45 TraesCS1A01G336100 chr3A 84.884 86 11 2 3337 3421 437858779 437858695 9.140000e-13 86.1
46 TraesCS1A01G336100 chr3A 100.000 28 0 0 5095 5122 479766467 479766494 9.000000e-03 52.8
47 TraesCS1A01G336100 chr7A 80.597 134 15 9 2709 2836 1740884 1740756 5.460000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G336100 chr1A 522963641 522968762 5121 False 3205.466667 9459 96.078667 1 5122 3 chr1A.!!$F1 5121
1 TraesCS1A01G336100 chr1B 579936787 579940933 4146 False 1065.250000 2885 85.736500 580 5122 4 chr1B.!!$F2 4542
2 TraesCS1A01G336100 chr1B 579929252 579929897 645 False 512.000000 512 81.346000 126 832 1 chr1B.!!$F1 706
3 TraesCS1A01G336100 chr1D 427626378 427630940 4562 False 760.857143 2702 90.282143 119 5084 7 chr1D.!!$F1 4965
4 TraesCS1A01G336100 chr6B 157885540 157886906 1366 True 1858.000000 1858 91.402000 1638 2997 1 chr6B.!!$R1 1359
5 TraesCS1A01G336100 chr6B 687970772 687972138 1366 True 1797.000000 1797 90.614000 1638 2997 1 chr6B.!!$R2 1359
6 TraesCS1A01G336100 chr6B 687994887 687996253 1366 True 1792.000000 1792 90.542000 1638 2997 1 chr6B.!!$R3 1359
7 TraesCS1A01G336100 chr2B 560723482 560724849 1367 False 1821.000000 1821 90.896000 1638 2997 1 chr2B.!!$F1 1359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.462047 CCATGTTACTCCCTCCGTGC 60.462 60.000 0.00 0.00 0.00 5.34 F
34 35 0.537188 CATGTTACTCCCTCCGTGCT 59.463 55.000 0.00 0.00 0.00 4.40 F
36 37 0.541063 TGTTACTCCCTCCGTGCTCA 60.541 55.000 0.00 0.00 0.00 4.26 F
715 755 0.588482 GTCGAGCTCGTTACCGTAGC 60.588 60.000 33.33 11.16 40.80 3.58 F
1947 2125 0.318107 CAAATGAATCGCCATCCGCC 60.318 55.000 0.00 0.00 36.73 6.13 F
2475 2692 2.019897 AACACAAAGGCACTGCAGGC 62.020 55.000 19.93 17.77 40.86 4.85 F
3521 3795 2.829720 ACGTCTACTATGTTCAAGCCCA 59.170 45.455 0.00 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 1642 0.178068 AACAATGGTCGATCGGGAGG 59.822 55.0 16.41 3.24 0.00 4.30 R
1521 1663 0.390209 ATAACCGGGTCGAACAACCG 60.390 55.0 6.32 7.46 46.79 4.44 R
1622 1765 0.597637 CGGAACAGTCGACAAGTGCT 60.598 55.0 19.50 0.00 0.00 4.40 R
2605 2827 0.855598 AATGTGGCCAGCCTATCCAT 59.144 50.0 5.11 0.13 36.94 3.41 R
3531 3805 0.111253 CAAGGCTCAAGTGGGAAGGT 59.889 55.0 0.00 0.00 0.00 3.50 R
3532 3806 0.111253 ACAAGGCTCAAGTGGGAAGG 59.889 55.0 0.00 0.00 0.00 3.46 R
4491 4963 0.969894 ATATCCTACCGTGGCAGAGC 59.030 55.0 0.00 0.00 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.975693 TGGTTCATTTTCCATGTTACTCC 57.024 39.130 0.00 0.00 0.00 3.85
26 27 4.770010 TGGTTCATTTTCCATGTTACTCCC 59.230 41.667 0.00 0.00 0.00 4.30
27 28 5.016831 GGTTCATTTTCCATGTTACTCCCT 58.983 41.667 0.00 0.00 0.00 4.20
28 29 5.125578 GGTTCATTTTCCATGTTACTCCCTC 59.874 44.000 0.00 0.00 0.00 4.30
29 30 4.855340 TCATTTTCCATGTTACTCCCTCC 58.145 43.478 0.00 0.00 0.00 4.30
30 31 3.343941 TTTTCCATGTTACTCCCTCCG 57.656 47.619 0.00 0.00 0.00 4.63
31 32 1.946984 TTCCATGTTACTCCCTCCGT 58.053 50.000 0.00 0.00 0.00 4.69
32 33 1.191535 TCCATGTTACTCCCTCCGTG 58.808 55.000 0.00 0.00 0.00 4.94
33 34 0.462047 CCATGTTACTCCCTCCGTGC 60.462 60.000 0.00 0.00 0.00 5.34
34 35 0.537188 CATGTTACTCCCTCCGTGCT 59.463 55.000 0.00 0.00 0.00 4.40
35 36 0.824759 ATGTTACTCCCTCCGTGCTC 59.175 55.000 0.00 0.00 0.00 4.26
36 37 0.541063 TGTTACTCCCTCCGTGCTCA 60.541 55.000 0.00 0.00 0.00 4.26
37 38 0.824759 GTTACTCCCTCCGTGCTCAT 59.175 55.000 0.00 0.00 0.00 2.90
38 39 2.029623 GTTACTCCCTCCGTGCTCATA 58.970 52.381 0.00 0.00 0.00 2.15
39 40 2.429610 GTTACTCCCTCCGTGCTCATAA 59.570 50.000 0.00 0.00 0.00 1.90
40 41 1.794714 ACTCCCTCCGTGCTCATAAT 58.205 50.000 0.00 0.00 0.00 1.28
41 42 2.958818 ACTCCCTCCGTGCTCATAATA 58.041 47.619 0.00 0.00 0.00 0.98
42 43 3.511477 ACTCCCTCCGTGCTCATAATAT 58.489 45.455 0.00 0.00 0.00 1.28
43 44 4.673968 ACTCCCTCCGTGCTCATAATATA 58.326 43.478 0.00 0.00 0.00 0.86
44 45 5.084519 ACTCCCTCCGTGCTCATAATATAA 58.915 41.667 0.00 0.00 0.00 0.98
45 46 5.186021 ACTCCCTCCGTGCTCATAATATAAG 59.814 44.000 0.00 0.00 0.00 1.73
46 47 5.330233 TCCCTCCGTGCTCATAATATAAGA 58.670 41.667 0.00 0.00 0.00 2.10
47 48 5.185249 TCCCTCCGTGCTCATAATATAAGAC 59.815 44.000 0.00 0.00 0.00 3.01
48 49 5.096169 CCTCCGTGCTCATAATATAAGACG 58.904 45.833 0.00 0.00 0.00 4.18
49 50 5.335740 CCTCCGTGCTCATAATATAAGACGT 60.336 44.000 0.00 0.00 0.00 4.34
50 51 6.080648 TCCGTGCTCATAATATAAGACGTT 57.919 37.500 0.00 0.00 0.00 3.99
51 52 7.205737 TCCGTGCTCATAATATAAGACGTTA 57.794 36.000 0.00 0.00 0.00 3.18
52 53 7.823665 TCCGTGCTCATAATATAAGACGTTAT 58.176 34.615 0.00 0.00 33.25 1.89
53 54 8.301720 TCCGTGCTCATAATATAAGACGTTATT 58.698 33.333 0.00 0.00 31.04 1.40
54 55 8.373256 CCGTGCTCATAATATAAGACGTTATTG 58.627 37.037 0.00 0.00 31.04 1.90
55 56 8.912658 CGTGCTCATAATATAAGACGTTATTGT 58.087 33.333 0.00 0.00 31.04 2.71
123 124 9.647918 TTATGAGAGAGAGGAAGTACAATATGT 57.352 33.333 0.00 0.00 0.00 2.29
124 125 7.340122 TGAGAGAGAGGAAGTACAATATGTG 57.660 40.000 0.00 0.00 0.00 3.21
130 131 9.642343 AGAGAGGAAGTACAATATGTGTATGTA 57.358 33.333 0.00 0.00 44.52 2.29
159 160 5.772521 ACACTGTTATGTTTTGATGAAGCC 58.227 37.500 0.00 0.00 0.00 4.35
172 173 1.082104 GAAGCCTGCCAACGAAACG 60.082 57.895 0.00 0.00 0.00 3.60
184 185 0.878961 ACGAAACGAAGCCAGGTGAC 60.879 55.000 0.00 0.00 0.00 3.67
209 212 0.736053 TCGGTCTTGGTTTGTTGTGC 59.264 50.000 0.00 0.00 0.00 4.57
338 341 1.945354 TTCTTCGGCTACCCTGCGAG 61.945 60.000 0.00 0.00 0.00 5.03
360 363 2.512515 GCCTACTGCTCGGCCTTG 60.513 66.667 0.00 0.00 40.43 3.61
397 400 1.747355 GCTGCCTCAGGTAGTACGTAA 59.253 52.381 10.94 0.00 37.73 3.18
400 403 3.689347 TGCCTCAGGTAGTACGTAAAGA 58.311 45.455 0.00 0.00 0.00 2.52
402 405 4.157289 TGCCTCAGGTAGTACGTAAAGAAG 59.843 45.833 0.00 0.00 0.00 2.85
403 406 4.670347 CCTCAGGTAGTACGTAAAGAAGC 58.330 47.826 0.00 0.00 0.00 3.86
404 407 4.398673 CCTCAGGTAGTACGTAAAGAAGCT 59.601 45.833 0.00 0.00 0.00 3.74
405 408 5.587844 CCTCAGGTAGTACGTAAAGAAGCTA 59.412 44.000 0.00 0.00 0.00 3.32
460 465 1.502190 GCTAGAAAGCCAACCGTGC 59.498 57.895 0.00 0.00 43.40 5.34
466 471 2.146073 AAAGCCAACCGTGCATCAGC 62.146 55.000 0.00 0.00 42.57 4.26
473 478 1.672030 CCGTGCATCAGCCAGTCAA 60.672 57.895 0.00 0.00 41.13 3.18
512 522 4.122776 ACGGAGAAATCAAGAATCCATCG 58.877 43.478 0.00 0.00 0.00 3.84
555 571 5.298276 ACGCAGAAGAAAATAACAAGGTCAA 59.702 36.000 0.00 0.00 0.00 3.18
571 587 8.877808 ACAAGGTCAAGAGAAAAATTTCAATC 57.122 30.769 8.47 0.00 39.61 2.67
572 588 8.477256 ACAAGGTCAAGAGAAAAATTTCAATCA 58.523 29.630 8.47 0.00 39.61 2.57
573 589 9.316730 CAAGGTCAAGAGAAAAATTTCAATCAA 57.683 29.630 8.47 0.00 39.61 2.57
715 755 0.588482 GTCGAGCTCGTTACCGTAGC 60.588 60.000 33.33 11.16 40.80 3.58
826 866 4.400961 GGCTGGCTTCTCCGCACT 62.401 66.667 0.00 0.00 36.52 4.40
902 969 0.618968 AGAGAGACCATCCCACCACC 60.619 60.000 0.00 0.00 0.00 4.61
904 971 2.614013 AGACCATCCCACCACCCC 60.614 66.667 0.00 0.00 0.00 4.95
925 992 2.759795 GGAAGCAGCCTGGGAAGT 59.240 61.111 0.00 0.00 0.00 3.01
934 1001 0.691413 GCCTGGGAAGTAGCTAGGGT 60.691 60.000 0.00 0.00 0.00 4.34
1108 1191 2.134933 CCCGCCCCCTCTACTCTTC 61.135 68.421 0.00 0.00 0.00 2.87
1147 1230 4.383602 CGCTGGCGGTTTGTTCGG 62.384 66.667 7.12 0.00 35.56 4.30
1149 1232 2.943653 CTGGCGGTTTGTTCGGTC 59.056 61.111 0.00 0.00 0.00 4.79
1151 1234 2.662527 GGCGGTTTGTTCGGTCGA 60.663 61.111 0.00 0.00 0.00 4.20
1153 1236 1.131826 GCGGTTTGTTCGGTCGATG 59.868 57.895 0.00 0.00 0.00 3.84
1154 1237 1.562575 GCGGTTTGTTCGGTCGATGT 61.563 55.000 0.00 0.00 0.00 3.06
1155 1238 1.700523 CGGTTTGTTCGGTCGATGTA 58.299 50.000 0.00 0.00 0.00 2.29
1156 1239 2.060284 CGGTTTGTTCGGTCGATGTAA 58.940 47.619 0.00 0.00 0.00 2.41
1169 1252 1.517276 CGATGTAAGGCGCTTAGTTCG 59.483 52.381 7.64 10.93 30.80 3.95
1391 1529 4.060205 TGGGTTCGTTAGCTTGAGTTTAC 58.940 43.478 0.00 0.00 0.00 2.01
1398 1536 4.753107 CGTTAGCTTGAGTTTACCCTTTGA 59.247 41.667 0.00 0.00 0.00 2.69
1410 1550 5.554034 TTACCCTTTGAAAATATGGGGGA 57.446 39.130 4.86 0.00 42.00 4.81
1461 1603 3.243068 CGGCTCCACTAATTAATTGGTGC 60.243 47.826 29.45 23.37 44.72 5.01
1462 1604 4.307443 GCTCCACTAATTAATTGGTGCC 57.693 45.455 29.45 19.23 44.72 5.01
1494 1636 1.695893 CTACTGCATTCCGCGTGTGG 61.696 60.000 4.92 0.00 46.97 4.17
1505 1647 2.048503 CGTGTGGACGTTCCTCCC 60.049 66.667 0.00 0.00 40.91 4.30
1506 1648 2.048503 GTGTGGACGTTCCTCCCG 60.049 66.667 0.00 0.00 37.46 5.14
1507 1649 2.203523 TGTGGACGTTCCTCCCGA 60.204 61.111 0.00 0.00 37.46 5.14
1508 1650 1.608336 TGTGGACGTTCCTCCCGAT 60.608 57.895 0.00 0.00 37.46 4.18
1521 1663 1.933853 CTCCCGATCGACCATTGTTTC 59.066 52.381 18.66 0.00 0.00 2.78
1532 1674 2.032426 ACCATTGTTTCGGTTGTTCGAC 59.968 45.455 0.00 0.00 39.01 4.20
1543 1685 1.728425 GTTGTTCGACCCGGTTATGAC 59.272 52.381 0.00 0.00 0.00 3.06
1570 1712 3.792401 TGTTCACCTGTAGAACTGTGTG 58.208 45.455 7.47 0.00 44.30 3.82
1572 1714 3.728076 TCACCTGTAGAACTGTGTGTC 57.272 47.619 0.00 0.00 0.00 3.67
1576 1718 3.068307 ACCTGTAGAACTGTGTGTCTGTC 59.932 47.826 0.00 0.00 0.00 3.51
1606 1749 5.335191 GGTTGTCTGCTTTGATTGGAAGTAG 60.335 44.000 0.00 0.00 37.94 2.57
1614 1757 5.183140 GCTTTGATTGGAAGTAGCACCTTAA 59.817 40.000 0.00 0.00 0.00 1.85
1617 1760 8.871629 TTTGATTGGAAGTAGCACCTTAATTA 57.128 30.769 0.00 0.00 0.00 1.40
1618 1761 8.506168 TTGATTGGAAGTAGCACCTTAATTAG 57.494 34.615 0.00 0.00 0.00 1.73
1619 1762 7.630082 TGATTGGAAGTAGCACCTTAATTAGT 58.370 34.615 0.00 0.00 0.00 2.24
1620 1763 8.107095 TGATTGGAAGTAGCACCTTAATTAGTT 58.893 33.333 0.00 0.00 0.00 2.24
1622 1765 9.969001 ATTGGAAGTAGCACCTTAATTAGTTTA 57.031 29.630 0.00 0.00 0.00 2.01
1624 1767 7.551617 TGGAAGTAGCACCTTAATTAGTTTAGC 59.448 37.037 0.00 0.00 0.00 3.09
1625 1768 7.551617 GGAAGTAGCACCTTAATTAGTTTAGCA 59.448 37.037 0.00 0.00 0.00 3.49
1626 1769 7.845066 AGTAGCACCTTAATTAGTTTAGCAC 57.155 36.000 0.00 0.00 0.00 4.40
1627 1770 7.621796 AGTAGCACCTTAATTAGTTTAGCACT 58.378 34.615 0.00 0.00 39.87 4.40
1628 1771 8.101419 AGTAGCACCTTAATTAGTTTAGCACTT 58.899 33.333 0.00 0.00 36.88 3.16
1629 1772 7.145932 AGCACCTTAATTAGTTTAGCACTTG 57.854 36.000 0.00 0.00 36.88 3.16
1630 1773 6.715264 AGCACCTTAATTAGTTTAGCACTTGT 59.285 34.615 0.00 0.00 36.88 3.16
1631 1774 7.021790 GCACCTTAATTAGTTTAGCACTTGTC 58.978 38.462 0.00 0.00 36.88 3.18
1632 1775 7.234384 CACCTTAATTAGTTTAGCACTTGTCG 58.766 38.462 0.00 0.00 36.88 4.35
1641 1784 0.597637 AGCACTTGTCGACTGTTCCG 60.598 55.000 17.92 5.60 0.00 4.30
1698 1872 3.826524 TGCAATGTTCTCTGTGGGTAAA 58.173 40.909 0.00 0.00 0.00 2.01
1717 1891 9.762381 TGGGTAAAATGTTCCTATTTATCTGTT 57.238 29.630 0.00 0.00 30.47 3.16
1790 1965 7.201617 GCATGGTTTTGTCTACTCCAATAGTAC 60.202 40.741 0.00 0.00 39.80 2.73
1791 1966 6.392354 TGGTTTTGTCTACTCCAATAGTACG 58.608 40.000 0.00 0.00 39.80 3.67
1792 1967 6.015180 TGGTTTTGTCTACTCCAATAGTACGT 60.015 38.462 0.00 0.00 39.80 3.57
1793 1968 7.176515 TGGTTTTGTCTACTCCAATAGTACGTA 59.823 37.037 0.00 0.00 39.80 3.57
1818 1993 4.629200 GTGAAAATTGTCAACACTTTGCCA 59.371 37.500 0.00 0.28 30.64 4.92
1911 2088 3.944087 AGTAGATGTTCCTGGTTTGCTC 58.056 45.455 0.00 0.00 0.00 4.26
1936 2114 7.669722 TCCAGCTACTTTCCTAAACAAATGAAT 59.330 33.333 0.00 0.00 0.00 2.57
1938 2116 7.693951 CAGCTACTTTCCTAAACAAATGAATCG 59.306 37.037 0.00 0.00 0.00 3.34
1947 2125 0.318107 CAAATGAATCGCCATCCGCC 60.318 55.000 0.00 0.00 36.73 6.13
1952 2130 4.910585 ATCGCCATCCGCCGGAAC 62.911 66.667 11.19 1.45 34.34 3.62
1965 2143 2.413634 CGCCGGAACACCAGTTTTTATC 60.414 50.000 5.05 0.00 38.30 1.75
1975 2153 5.535030 ACACCAGTTTTTATCCTCCTTTCAC 59.465 40.000 0.00 0.00 0.00 3.18
1991 2169 7.311109 CCTCCTTTCACTATTTTGTACTACCCT 60.311 40.741 0.00 0.00 0.00 4.34
1998 2176 3.302365 TTTTGTACTACCCTCCGTTCG 57.698 47.619 0.00 0.00 0.00 3.95
2116 2295 9.288576 TCATAGTTTTCATCTGAAACTGAATGT 57.711 29.630 11.34 0.00 43.01 2.71
2141 2320 3.741029 TGGTACTTCAGCAGATCGC 57.259 52.632 0.00 1.92 42.91 4.58
2245 2460 5.012239 TCTCATATGCTTGTTTTGGCTCTT 58.988 37.500 0.00 0.00 0.00 2.85
2371 2586 8.924511 ATTCTCTTCCTGAAAAACTTACATCA 57.075 30.769 0.00 0.00 0.00 3.07
2409 2624 3.777465 TCAGTCCTTCAGCGTATACAC 57.223 47.619 3.32 0.00 0.00 2.90
2475 2692 2.019897 AACACAAAGGCACTGCAGGC 62.020 55.000 19.93 17.77 40.86 4.85
2605 2827 9.719355 AAATATAATGTACTGCGTCCATGATTA 57.281 29.630 0.00 0.00 0.00 1.75
2693 2915 8.798859 AGAATTTTCTACTGCATGTACTTGAT 57.201 30.769 12.65 0.33 35.34 2.57
2702 2924 4.264253 TGCATGTACTTGATTCCTTCAGG 58.736 43.478 12.65 0.00 37.45 3.86
2730 2952 7.826744 TGTTATTATGCACACTCCTGTCATAAA 59.173 33.333 0.00 0.00 35.87 1.40
2882 3121 4.342092 GGGCATGCTTCTTTATGTACCATT 59.658 41.667 18.92 0.00 0.00 3.16
2883 3122 5.284079 GGCATGCTTCTTTATGTACCATTG 58.716 41.667 18.92 0.00 0.00 2.82
2884 3123 5.067674 GGCATGCTTCTTTATGTACCATTGA 59.932 40.000 18.92 0.00 0.00 2.57
2890 3129 8.407832 TGCTTCTTTATGTACCATTGATGATTG 58.592 33.333 0.00 0.00 0.00 2.67
2956 3196 5.174398 CACTTGAAATGTTGCTGACACAATC 59.826 40.000 0.00 0.00 42.04 2.67
2980 3220 6.488683 TCGGTACAAGTTCTGGAATGAAAAAT 59.511 34.615 0.00 0.00 0.00 1.82
3035 3301 3.982576 AGTACTTGCCGTTCTTTTTGG 57.017 42.857 0.00 0.00 0.00 3.28
3087 3353 8.151596 GGAAATTCCACCCTTTGTTATGTTTTA 58.848 33.333 7.23 0.00 36.28 1.52
3088 3354 9.719355 GAAATTCCACCCTTTGTTATGTTTTAT 57.281 29.630 0.00 0.00 0.00 1.40
3089 3355 9.500785 AAATTCCACCCTTTGTTATGTTTTATG 57.499 29.630 0.00 0.00 0.00 1.90
3407 3677 3.777522 AGGTGAGGGGTTAAGAGAGATTG 59.222 47.826 0.00 0.00 0.00 2.67
3502 3776 7.073883 CAGCACATCCAAGATTATAATTGACG 58.926 38.462 0.00 0.00 0.00 4.35
3503 3777 6.767902 AGCACATCCAAGATTATAATTGACGT 59.232 34.615 0.00 0.00 0.00 4.34
3504 3778 7.041780 AGCACATCCAAGATTATAATTGACGTC 60.042 37.037 9.11 9.11 0.00 4.34
3505 3779 7.041780 GCACATCCAAGATTATAATTGACGTCT 60.042 37.037 17.92 0.00 0.00 4.18
3507 3781 9.477484 ACATCCAAGATTATAATTGACGTCTAC 57.523 33.333 17.92 0.00 0.00 2.59
3508 3782 9.698309 CATCCAAGATTATAATTGACGTCTACT 57.302 33.333 17.92 0.85 0.00 2.57
3519 3793 4.106029 TGACGTCTACTATGTTCAAGCC 57.894 45.455 17.92 0.00 0.00 4.35
3520 3794 3.119245 TGACGTCTACTATGTTCAAGCCC 60.119 47.826 17.92 0.00 0.00 5.19
3521 3795 2.829720 ACGTCTACTATGTTCAAGCCCA 59.170 45.455 0.00 0.00 0.00 5.36
3522 3796 3.451178 ACGTCTACTATGTTCAAGCCCAT 59.549 43.478 0.00 0.00 0.00 4.00
3523 3797 4.081087 ACGTCTACTATGTTCAAGCCCATT 60.081 41.667 0.00 0.00 0.00 3.16
3524 3798 4.876107 CGTCTACTATGTTCAAGCCCATTT 59.124 41.667 0.00 0.00 0.00 2.32
3525 3799 5.354234 CGTCTACTATGTTCAAGCCCATTTT 59.646 40.000 0.00 0.00 0.00 1.82
3526 3800 6.537301 CGTCTACTATGTTCAAGCCCATTTTA 59.463 38.462 0.00 0.00 0.00 1.52
3527 3801 7.465513 CGTCTACTATGTTCAAGCCCATTTTAC 60.466 40.741 0.00 0.00 0.00 2.01
3528 3802 5.914898 ACTATGTTCAAGCCCATTTTACC 57.085 39.130 0.00 0.00 0.00 2.85
3529 3803 5.580022 ACTATGTTCAAGCCCATTTTACCT 58.420 37.500 0.00 0.00 0.00 3.08
3530 3804 6.016555 ACTATGTTCAAGCCCATTTTACCTT 58.983 36.000 0.00 0.00 0.00 3.50
3531 3805 7.179269 ACTATGTTCAAGCCCATTTTACCTTA 58.821 34.615 0.00 0.00 0.00 2.69
3532 3806 5.715434 TGTTCAAGCCCATTTTACCTTAC 57.285 39.130 0.00 0.00 0.00 2.34
3533 3807 4.525100 TGTTCAAGCCCATTTTACCTTACC 59.475 41.667 0.00 0.00 0.00 2.85
3546 3820 1.351350 ACCTTACCTTCCCACTTGAGC 59.649 52.381 0.00 0.00 0.00 4.26
3625 3904 5.943706 TGGTGCATTTTAAGCGTTAAGTA 57.056 34.783 0.00 0.00 33.85 2.24
3651 3930 0.693049 TCCTTCCTCAGTCCCAAAGC 59.307 55.000 0.00 0.00 0.00 3.51
3747 4040 5.643379 ATTTCGTGCATTGGATGTTTACT 57.357 34.783 0.00 0.00 0.00 2.24
3748 4041 4.418013 TTCGTGCATTGGATGTTTACTG 57.582 40.909 0.00 0.00 0.00 2.74
3756 4049 2.937519 TGGATGTTTACTGTGGTTGCA 58.062 42.857 0.00 0.00 0.00 4.08
3757 4050 3.495331 TGGATGTTTACTGTGGTTGCAT 58.505 40.909 0.00 0.00 0.00 3.96
3758 4051 3.505680 TGGATGTTTACTGTGGTTGCATC 59.494 43.478 0.00 0.00 0.00 3.91
3761 4062 5.278957 GGATGTTTACTGTGGTTGCATCTTT 60.279 40.000 0.00 0.00 32.62 2.52
3771 4072 5.154222 GTGGTTGCATCTTTGTTTAGTAGC 58.846 41.667 0.00 0.00 0.00 3.58
3775 4076 6.349280 GGTTGCATCTTTGTTTAGTAGCATCA 60.349 38.462 0.00 0.00 0.00 3.07
3782 4083 6.881065 TCTTTGTTTAGTAGCATCAGAGCATT 59.119 34.615 0.00 0.00 36.85 3.56
3795 4096 5.227569 TCAGAGCATTGTTCCTTTGACTA 57.772 39.130 0.00 0.00 0.00 2.59
3796 4097 5.809001 TCAGAGCATTGTTCCTTTGACTAT 58.191 37.500 0.00 0.00 0.00 2.12
3835 4136 5.776173 TCTTTACCCATCTTTTTCGCAAA 57.224 34.783 0.00 0.00 0.00 3.68
3836 4137 6.339587 TCTTTACCCATCTTTTTCGCAAAT 57.660 33.333 0.00 0.00 0.00 2.32
3917 4218 2.224793 GGAAAAAGCTGGTACACCCTCT 60.225 50.000 0.00 0.00 34.29 3.69
3950 4255 7.061094 GCTGCTAGTAACATTGTTTTAGCTTTG 59.939 37.037 27.64 21.95 35.68 2.77
3956 4261 4.298332 ACATTGTTTTAGCTTTGCTTCGG 58.702 39.130 0.00 0.00 40.44 4.30
4034 4339 9.076596 GTTAGAATCAAAACATTTACCTGCATC 57.923 33.333 0.00 0.00 0.00 3.91
4039 4344 5.709631 TCAAAACATTTACCTGCATCTGCTA 59.290 36.000 3.53 0.00 42.66 3.49
4040 4345 6.377996 TCAAAACATTTACCTGCATCTGCTAT 59.622 34.615 3.53 0.00 42.66 2.97
4041 4346 6.780457 AAACATTTACCTGCATCTGCTATT 57.220 33.333 3.53 0.00 42.66 1.73
4073 4378 3.255642 TGCTTGATTTCTAACCTTGTGCC 59.744 43.478 0.00 0.00 0.00 5.01
4075 4380 4.379918 GCTTGATTTCTAACCTTGTGCCTC 60.380 45.833 0.00 0.00 0.00 4.70
4173 4478 2.351455 TGTGTTTTGTTGCGAGACTCA 58.649 42.857 2.82 0.00 0.00 3.41
4218 4523 8.996024 TTCCTTTTACTGCCTTTATTATTTGC 57.004 30.769 0.00 0.00 0.00 3.68
4219 4524 7.552459 TCCTTTTACTGCCTTTATTATTTGCC 58.448 34.615 0.00 0.00 0.00 4.52
4220 4525 6.761242 CCTTTTACTGCCTTTATTATTTGCCC 59.239 38.462 0.00 0.00 0.00 5.36
4221 4526 5.508200 TTACTGCCTTTATTATTTGCCCG 57.492 39.130 0.00 0.00 0.00 6.13
4222 4527 3.361786 ACTGCCTTTATTATTTGCCCGT 58.638 40.909 0.00 0.00 0.00 5.28
4223 4528 4.528920 ACTGCCTTTATTATTTGCCCGTA 58.471 39.130 0.00 0.00 0.00 4.02
4224 4529 4.578928 ACTGCCTTTATTATTTGCCCGTAG 59.421 41.667 0.00 0.00 0.00 3.51
4225 4530 4.528920 TGCCTTTATTATTTGCCCGTAGT 58.471 39.130 0.00 0.00 0.00 2.73
4226 4531 5.682659 TGCCTTTATTATTTGCCCGTAGTA 58.317 37.500 0.00 0.00 0.00 1.82
4227 4532 5.528320 TGCCTTTATTATTTGCCCGTAGTAC 59.472 40.000 0.00 0.00 0.00 2.73
4228 4533 5.761726 GCCTTTATTATTTGCCCGTAGTACT 59.238 40.000 0.00 0.00 0.00 2.73
4229 4534 6.930722 GCCTTTATTATTTGCCCGTAGTACTA 59.069 38.462 0.00 0.00 0.00 1.82
4230 4535 7.605309 GCCTTTATTATTTGCCCGTAGTACTAT 59.395 37.037 5.75 0.00 0.00 2.12
4231 4536 8.932791 CCTTTATTATTTGCCCGTAGTACTATG 58.067 37.037 14.24 14.24 0.00 2.23
4232 4537 7.894376 TTATTATTTGCCCGTAGTACTATGC 57.106 36.000 15.54 13.84 0.00 3.14
4233 4538 3.830744 ATTTGCCCGTAGTACTATGCA 57.169 42.857 15.54 15.93 0.00 3.96
4234 4539 2.882927 TTGCCCGTAGTACTATGCAG 57.117 50.000 15.54 10.38 0.00 4.41
4235 4540 1.771565 TGCCCGTAGTACTATGCAGT 58.228 50.000 15.54 0.00 38.91 4.40
4236 4541 2.934887 TGCCCGTAGTACTATGCAGTA 58.065 47.619 15.54 6.79 36.14 2.74
4237 4542 3.493334 TGCCCGTAGTACTATGCAGTAT 58.507 45.455 15.54 0.00 39.43 2.12
4238 4543 3.254903 TGCCCGTAGTACTATGCAGTATG 59.745 47.826 15.54 2.41 39.43 2.39
4239 4544 3.504906 GCCCGTAGTACTATGCAGTATGA 59.495 47.826 15.54 0.00 39.43 2.15
4240 4545 4.615452 GCCCGTAGTACTATGCAGTATGAC 60.615 50.000 15.54 0.00 39.43 3.06
4241 4546 4.082895 CCCGTAGTACTATGCAGTATGACC 60.083 50.000 15.54 0.00 39.43 4.02
4242 4547 4.378149 CCGTAGTACTATGCAGTATGACCG 60.378 50.000 15.54 5.56 39.43 4.79
4243 4548 4.450080 CGTAGTACTATGCAGTATGACCGA 59.550 45.833 9.15 0.00 39.43 4.69
4244 4549 5.049886 CGTAGTACTATGCAGTATGACCGAA 60.050 44.000 9.15 0.00 39.43 4.30
4245 4550 5.440234 AGTACTATGCAGTATGACCGAAG 57.560 43.478 0.00 0.00 39.43 3.79
4246 4551 5.131067 AGTACTATGCAGTATGACCGAAGA 58.869 41.667 0.00 0.00 39.43 2.87
4247 4552 5.593095 AGTACTATGCAGTATGACCGAAGAA 59.407 40.000 0.00 0.00 39.43 2.52
4248 4553 4.683832 ACTATGCAGTATGACCGAAGAAC 58.316 43.478 0.00 0.00 39.69 3.01
4249 4554 3.895232 ATGCAGTATGACCGAAGAACT 57.105 42.857 0.00 0.00 39.69 3.01
4250 4555 2.959516 TGCAGTATGACCGAAGAACTG 58.040 47.619 0.00 0.00 39.69 3.16
4251 4556 2.299013 TGCAGTATGACCGAAGAACTGT 59.701 45.455 0.00 0.00 39.69 3.55
4252 4557 2.668457 GCAGTATGACCGAAGAACTGTG 59.332 50.000 0.00 0.00 39.69 3.66
4253 4558 3.861131 GCAGTATGACCGAAGAACTGTGT 60.861 47.826 0.00 0.00 39.69 3.72
4254 4559 3.675225 CAGTATGACCGAAGAACTGTGTG 59.325 47.826 0.00 0.00 39.69 3.82
4255 4560 3.572682 AGTATGACCGAAGAACTGTGTGA 59.427 43.478 0.00 0.00 0.00 3.58
4256 4561 2.971660 TGACCGAAGAACTGTGTGAA 57.028 45.000 0.00 0.00 0.00 3.18
4257 4562 3.469008 TGACCGAAGAACTGTGTGAAT 57.531 42.857 0.00 0.00 0.00 2.57
4258 4563 3.130633 TGACCGAAGAACTGTGTGAATG 58.869 45.455 0.00 0.00 0.00 2.67
4259 4564 3.181470 TGACCGAAGAACTGTGTGAATGA 60.181 43.478 0.00 0.00 0.00 2.57
4260 4565 3.997021 GACCGAAGAACTGTGTGAATGAT 59.003 43.478 0.00 0.00 0.00 2.45
4261 4566 3.748048 ACCGAAGAACTGTGTGAATGATG 59.252 43.478 0.00 0.00 0.00 3.07
4282 4587 5.453567 TGCCTGTAGTAGTATGCACTATG 57.546 43.478 0.00 0.00 39.43 2.23
4287 4592 5.370679 TGTAGTAGTATGCACTATGACCGA 58.629 41.667 0.00 0.00 39.43 4.69
4316 4622 2.229543 TGTGAATGATGCCTGTGCTTTC 59.770 45.455 0.00 0.00 38.71 2.62
4345 4651 6.402550 CCGTTAGATGTGAATTCTGAACTTGG 60.403 42.308 7.05 0.00 0.00 3.61
4347 4653 4.338879 AGATGTGAATTCTGAACTTGGGG 58.661 43.478 7.05 0.00 0.00 4.96
4348 4654 3.593442 TGTGAATTCTGAACTTGGGGT 57.407 42.857 7.05 0.00 0.00 4.95
4357 4814 3.138283 TCTGAACTTGGGGTTGTTGATCT 59.862 43.478 0.00 0.00 38.41 2.75
4358 4815 3.891366 CTGAACTTGGGGTTGTTGATCTT 59.109 43.478 0.00 0.00 38.41 2.40
4368 4825 4.518970 GGGTTGTTGATCTTCAAGTTAGCA 59.481 41.667 0.00 0.00 37.00 3.49
4369 4826 5.009610 GGGTTGTTGATCTTCAAGTTAGCAA 59.990 40.000 0.00 0.00 37.00 3.91
4370 4827 6.460953 GGGTTGTTGATCTTCAAGTTAGCAAA 60.461 38.462 0.00 0.00 37.00 3.68
4383 4840 5.175090 AGTTAGCAAAAGCTTCTGTTGTC 57.825 39.130 0.00 0.00 31.77 3.18
4509 4989 2.426651 GCTCTGCCACGGTAGGATA 58.573 57.895 1.05 0.00 0.00 2.59
4540 5024 4.469586 AGCTCCCCTTTTCAAAGTTCAAAA 59.530 37.500 0.00 0.00 34.20 2.44
4541 5025 4.570772 GCTCCCCTTTTCAAAGTTCAAAAC 59.429 41.667 0.00 0.00 34.20 2.43
4544 5028 4.875536 CCCCTTTTCAAAGTTCAAAACCTG 59.124 41.667 0.00 0.00 34.20 4.00
4545 5029 5.337975 CCCCTTTTCAAAGTTCAAAACCTGA 60.338 40.000 0.00 0.00 34.20 3.86
4546 5030 6.169800 CCCTTTTCAAAGTTCAAAACCTGAA 58.830 36.000 0.00 2.50 36.14 3.02
4547 5031 6.652900 CCCTTTTCAAAGTTCAAAACCTGAAA 59.347 34.615 10.98 10.98 45.67 2.69
4548 5032 7.174080 CCCTTTTCAAAGTTCAAAACCTGAAAA 59.826 33.333 19.06 19.06 45.67 2.29
4549 5033 8.015087 CCTTTTCAAAGTTCAAAACCTGAAAAC 58.985 33.333 17.63 0.00 45.67 2.43
4550 5034 8.669946 TTTTCAAAGTTCAAAACCTGAAAACT 57.330 26.923 17.63 0.00 45.67 2.66
4551 5035 9.765795 TTTTCAAAGTTCAAAACCTGAAAACTA 57.234 25.926 17.63 5.68 45.67 2.24
4552 5036 9.936759 TTTCAAAGTTCAAAACCTGAAAACTAT 57.063 25.926 11.97 0.00 45.67 2.12
4557 5041 8.178313 AGTTCAAAACCTGAAAACTATAAGGG 57.822 34.615 0.00 0.00 45.67 3.95
4558 5042 6.584185 TCAAAACCTGAAAACTATAAGGGC 57.416 37.500 0.00 0.00 33.87 5.19
4559 5043 6.071984 TCAAAACCTGAAAACTATAAGGGCA 58.928 36.000 0.00 0.00 33.87 5.36
4560 5044 6.551601 TCAAAACCTGAAAACTATAAGGGCAA 59.448 34.615 0.00 0.00 33.87 4.52
4561 5045 6.987403 AAACCTGAAAACTATAAGGGCAAA 57.013 33.333 0.00 0.00 33.87 3.68
4562 5046 6.987403 AACCTGAAAACTATAAGGGCAAAA 57.013 33.333 0.00 0.00 33.87 2.44
4645 5148 2.438434 CATTGGGCCACGGAGTCC 60.438 66.667 5.23 0.00 41.61 3.85
4650 5153 4.131088 GGCCACGGAGTCCTCGAC 62.131 72.222 7.77 0.00 41.61 4.20
4651 5154 4.477975 GCCACGGAGTCCTCGACG 62.478 72.222 7.77 0.00 41.61 5.12
4653 5156 2.330372 CCACGGAGTCCTCGACGAA 61.330 63.158 7.77 0.00 41.61 3.85
4654 5157 1.654954 CCACGGAGTCCTCGACGAAT 61.655 60.000 7.77 0.00 41.61 3.34
4655 5158 0.523546 CACGGAGTCCTCGACGAATG 60.524 60.000 7.77 0.00 41.61 2.67
4656 5159 0.675837 ACGGAGTCCTCGACGAATGA 60.676 55.000 7.77 0.00 29.74 2.57
4658 5161 1.871676 CGGAGTCCTCGACGAATGATA 59.128 52.381 7.77 0.00 37.67 2.15
4659 5162 2.484651 CGGAGTCCTCGACGAATGATAT 59.515 50.000 7.77 0.00 37.67 1.63
4660 5163 3.058155 CGGAGTCCTCGACGAATGATATT 60.058 47.826 7.77 0.00 37.67 1.28
4661 5164 4.153655 CGGAGTCCTCGACGAATGATATTA 59.846 45.833 7.77 0.00 37.67 0.98
4662 5165 5.334646 CGGAGTCCTCGACGAATGATATTAA 60.335 44.000 7.77 0.00 37.67 1.40
4663 5166 6.087522 GGAGTCCTCGACGAATGATATTAAG 58.912 44.000 0.41 0.00 37.67 1.85
4664 5167 6.015027 AGTCCTCGACGAATGATATTAAGG 57.985 41.667 0.00 0.00 37.67 2.69
4665 5168 5.768662 AGTCCTCGACGAATGATATTAAGGA 59.231 40.000 0.00 0.00 37.67 3.36
4666 5169 5.857517 GTCCTCGACGAATGATATTAAGGAC 59.142 44.000 9.05 9.05 42.31 3.85
4667 5170 4.852104 CCTCGACGAATGATATTAAGGACG 59.148 45.833 0.00 0.00 0.00 4.79
4671 5174 5.524971 ACGAATGATATTAAGGACGGTCA 57.475 39.130 10.76 0.00 0.00 4.02
4686 5189 3.941483 GACGGTCAATTGGATGAATGACT 59.059 43.478 5.42 0.00 0.00 3.41
4691 5194 6.327934 GGTCAATTGGATGAATGACTTTCTG 58.672 40.000 5.42 0.00 35.23 3.02
4693 5196 6.012113 TCAATTGGATGAATGACTTTCTGGT 58.988 36.000 5.42 0.00 35.23 4.00
4709 5212 6.998074 ACTTTCTGGTGATAACATTTCTGACA 59.002 34.615 0.00 0.00 0.00 3.58
4805 5309 2.208431 CGGAGTCATTGATGGAAGAGC 58.792 52.381 0.00 0.00 0.00 4.09
4814 5337 6.869913 GTCATTGATGGAAGAGCAAAAATTCA 59.130 34.615 0.00 0.00 0.00 2.57
4820 5343 6.506500 TGGAAGAGCAAAAATTCATCTCTC 57.493 37.500 0.00 0.00 33.42 3.20
4821 5344 6.243900 TGGAAGAGCAAAAATTCATCTCTCT 58.756 36.000 0.00 0.00 33.42 3.10
4822 5345 6.150641 TGGAAGAGCAAAAATTCATCTCTCTG 59.849 38.462 0.00 0.00 33.42 3.35
4826 5349 6.713903 AGAGCAAAAATTCATCTCTCTGTTCA 59.286 34.615 0.00 0.00 28.82 3.18
4845 5368 9.958180 TCTGTTCATCAGATTAGGTTAAATGAA 57.042 29.630 0.00 0.00 46.77 2.57
4846 5369 9.994432 CTGTTCATCAGATTAGGTTAAATGAAC 57.006 33.333 14.99 14.99 46.27 3.18
4910 5433 4.511826 CCTTAGAAAGGTGAACAGTGACAC 59.488 45.833 13.66 13.66 43.95 3.67
4914 5443 0.810031 AGGTGAACAGTGACACGTGC 60.810 55.000 17.22 9.30 37.82 5.34
4918 5447 1.807142 TGAACAGTGACACGTGCAAAA 59.193 42.857 17.22 0.00 0.00 2.44
4943 5472 5.796350 ATAAATAAGTTGACACGTGAGCC 57.204 39.130 25.01 11.25 0.00 4.70
5006 5536 0.466543 ACACACAAGGTTCACCGCTA 59.533 50.000 0.00 0.00 42.08 4.26
5054 5584 6.381420 ACTTTGCACCTCTGTACTATACATCT 59.619 38.462 0.00 0.00 38.15 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.123547 GGGAGTAACATGGAAAATGAACCAATA 59.876 37.037 0.00 0.00 39.69 1.90
1 2 6.070824 GGGAGTAACATGGAAAATGAACCAAT 60.071 38.462 0.00 0.00 39.69 3.16
2 3 5.245075 GGGAGTAACATGGAAAATGAACCAA 59.755 40.000 0.00 0.00 39.69 3.67
4 5 5.016831 AGGGAGTAACATGGAAAATGAACC 58.983 41.667 0.00 0.00 0.00 3.62
6 7 5.261216 GGAGGGAGTAACATGGAAAATGAA 58.739 41.667 0.00 0.00 0.00 2.57
8 9 3.627577 CGGAGGGAGTAACATGGAAAATG 59.372 47.826 0.00 0.00 0.00 2.32
9 10 3.265995 ACGGAGGGAGTAACATGGAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
11 12 2.027561 CACGGAGGGAGTAACATGGAAA 60.028 50.000 0.00 0.00 0.00 3.13
12 13 1.553248 CACGGAGGGAGTAACATGGAA 59.447 52.381 0.00 0.00 0.00 3.53
13 14 1.191535 CACGGAGGGAGTAACATGGA 58.808 55.000 0.00 0.00 0.00 3.41
14 15 0.462047 GCACGGAGGGAGTAACATGG 60.462 60.000 0.00 0.00 0.00 3.66
15 16 0.537188 AGCACGGAGGGAGTAACATG 59.463 55.000 0.00 0.00 0.00 3.21
16 17 0.824759 GAGCACGGAGGGAGTAACAT 59.175 55.000 0.00 0.00 0.00 2.71
17 18 0.541063 TGAGCACGGAGGGAGTAACA 60.541 55.000 0.00 0.00 0.00 2.41
18 19 0.824759 ATGAGCACGGAGGGAGTAAC 59.175 55.000 0.00 0.00 0.00 2.50
19 20 2.447408 TATGAGCACGGAGGGAGTAA 57.553 50.000 0.00 0.00 0.00 2.24
20 21 2.447408 TTATGAGCACGGAGGGAGTA 57.553 50.000 0.00 0.00 0.00 2.59
21 22 1.794714 ATTATGAGCACGGAGGGAGT 58.205 50.000 0.00 0.00 0.00 3.85
22 23 5.419155 TCTTATATTATGAGCACGGAGGGAG 59.581 44.000 0.00 0.00 0.00 4.30
23 24 5.185249 GTCTTATATTATGAGCACGGAGGGA 59.815 44.000 0.00 0.00 0.00 4.20
24 25 5.411781 GTCTTATATTATGAGCACGGAGGG 58.588 45.833 0.00 0.00 0.00 4.30
25 26 5.096169 CGTCTTATATTATGAGCACGGAGG 58.904 45.833 10.07 0.00 0.00 4.30
26 27 5.700846 ACGTCTTATATTATGAGCACGGAG 58.299 41.667 16.71 0.00 0.00 4.63
27 28 5.700722 ACGTCTTATATTATGAGCACGGA 57.299 39.130 16.71 0.00 0.00 4.69
28 29 8.373256 CAATAACGTCTTATATTATGAGCACGG 58.627 37.037 16.71 6.75 0.00 4.94
29 30 8.912658 ACAATAACGTCTTATATTATGAGCACG 58.087 33.333 13.57 13.57 0.00 5.34
97 98 9.647918 ACATATTGTACTTCCTCTCTCTCATAA 57.352 33.333 0.00 0.00 0.00 1.90
98 99 9.072375 CACATATTGTACTTCCTCTCTCTCATA 57.928 37.037 0.00 0.00 0.00 2.15
99 100 7.563188 ACACATATTGTACTTCCTCTCTCTCAT 59.437 37.037 0.00 0.00 36.32 2.90
100 101 6.892456 ACACATATTGTACTTCCTCTCTCTCA 59.108 38.462 0.00 0.00 36.32 3.27
101 102 7.341445 ACACATATTGTACTTCCTCTCTCTC 57.659 40.000 0.00 0.00 36.32 3.20
102 103 8.855110 CATACACATATTGTACTTCCTCTCTCT 58.145 37.037 0.00 0.00 43.71 3.10
103 104 8.634444 ACATACACATATTGTACTTCCTCTCTC 58.366 37.037 0.00 0.00 43.71 3.20
104 105 8.540507 ACATACACATATTGTACTTCCTCTCT 57.459 34.615 0.00 0.00 43.71 3.10
145 146 1.702182 TGGCAGGCTTCATCAAAACA 58.298 45.000 0.00 0.00 0.00 2.83
150 151 0.250684 TTCGTTGGCAGGCTTCATCA 60.251 50.000 0.00 0.00 0.00 3.07
151 152 0.881118 TTTCGTTGGCAGGCTTCATC 59.119 50.000 0.00 0.00 0.00 2.92
152 153 0.598065 GTTTCGTTGGCAGGCTTCAT 59.402 50.000 0.00 0.00 0.00 2.57
159 160 1.082104 GGCTTCGTTTCGTTGGCAG 60.082 57.895 0.00 0.00 0.00 4.85
184 185 1.202651 ACAAACCAAGACCGAGTCAGG 60.203 52.381 6.78 9.36 36.52 3.86
195 196 1.267365 CACACGCACAACAAACCAAG 58.733 50.000 0.00 0.00 0.00 3.61
209 212 3.952675 GGCCTGCACACACACACG 61.953 66.667 0.00 0.00 0.00 4.49
338 341 2.512515 CCGAGCAGTAGGCCTTGC 60.513 66.667 19.92 19.92 46.50 4.01
358 361 1.074775 AACAGATGCCGCCTTCCAA 59.925 52.632 0.00 0.00 0.00 3.53
359 362 1.675310 CAACAGATGCCGCCTTCCA 60.675 57.895 0.00 0.00 0.00 3.53
360 363 3.190878 CAACAGATGCCGCCTTCC 58.809 61.111 0.00 0.00 0.00 3.46
397 400 1.136984 CCGTCGTCGCTAGCTTCTT 59.863 57.895 13.93 0.00 35.54 2.52
400 403 4.831307 CGCCGTCGTCGCTAGCTT 62.831 66.667 13.93 0.00 35.54 3.74
403 406 4.883300 GTCCGCCGTCGTCGCTAG 62.883 72.222 0.00 0.00 35.54 3.42
460 465 4.796038 AAAAGGAATTGACTGGCTGATG 57.204 40.909 0.00 0.00 0.00 3.07
512 522 1.130561 GTAAACAATGCAGGCTCGACC 59.869 52.381 0.00 0.00 39.61 4.79
571 587 6.062646 CGCAGGTCGACGTTTATATTTATTG 58.937 40.000 8.27 0.00 41.67 1.90
572 588 5.750067 ACGCAGGTCGACGTTTATATTTATT 59.250 36.000 8.27 0.00 40.09 1.40
573 589 5.174398 CACGCAGGTCGACGTTTATATTTAT 59.826 40.000 8.27 0.00 41.32 1.40
574 590 4.500117 CACGCAGGTCGACGTTTATATTTA 59.500 41.667 8.27 0.00 41.32 1.40
581 597 2.105528 ACACGCAGGTCGACGTTT 59.894 55.556 8.27 0.00 41.32 3.60
906 973 3.984193 CTTCCCAGGCTGCTTCCCG 62.984 68.421 9.56 0.00 0.00 5.14
907 974 1.562672 TACTTCCCAGGCTGCTTCCC 61.563 60.000 9.56 0.00 0.00 3.97
909 976 0.746204 GCTACTTCCCAGGCTGCTTC 60.746 60.000 9.56 0.00 0.00 3.86
911 978 0.325671 TAGCTACTTCCCAGGCTGCT 60.326 55.000 9.56 2.69 36.40 4.24
934 1001 1.378119 TGCGGACTCCTCGAAGCTA 60.378 57.895 0.00 0.00 0.00 3.32
1091 1173 2.134933 GGAAGAGTAGAGGGGGCGG 61.135 68.421 0.00 0.00 0.00 6.13
1108 1191 4.501714 TCGCGAATCGAACCGGGG 62.502 66.667 6.20 0.00 45.36 5.73
1138 1221 2.159747 GCCTTACATCGACCGAACAAAC 60.160 50.000 0.00 0.00 0.00 2.93
1141 1224 0.457166 CGCCTTACATCGACCGAACA 60.457 55.000 0.00 0.00 0.00 3.18
1147 1230 2.205307 ACTAAGCGCCTTACATCGAC 57.795 50.000 2.29 0.00 0.00 4.20
1149 1232 1.517276 CGAACTAAGCGCCTTACATCG 59.483 52.381 2.29 4.07 0.00 3.84
1151 1234 2.667473 ACGAACTAAGCGCCTTACAT 57.333 45.000 2.29 0.00 0.00 2.29
1153 1236 1.201888 GCAACGAACTAAGCGCCTTAC 60.202 52.381 2.29 0.00 0.00 2.34
1154 1237 1.073177 GCAACGAACTAAGCGCCTTA 58.927 50.000 2.29 1.15 0.00 2.69
1155 1238 1.866925 GCAACGAACTAAGCGCCTT 59.133 52.632 2.29 0.00 0.00 4.35
1156 1239 2.380410 CGCAACGAACTAAGCGCCT 61.380 57.895 2.29 0.00 43.80 5.52
1291 1388 2.676471 CTCCCACCCCAAAAGGCG 60.676 66.667 0.00 0.00 0.00 5.52
1391 1529 3.711190 CCTTCCCCCATATTTTCAAAGGG 59.289 47.826 0.00 0.00 39.29 3.95
1398 1536 2.843730 GCAAACCCTTCCCCCATATTTT 59.156 45.455 0.00 0.00 0.00 1.82
1410 1550 3.421844 GAGGATACACAAGCAAACCCTT 58.578 45.455 0.00 0.00 41.41 3.95
1445 1587 3.243068 GCCTCGGCACCAATTAATTAGTG 60.243 47.826 18.83 18.83 41.49 2.74
1446 1588 2.949644 GCCTCGGCACCAATTAATTAGT 59.050 45.455 2.41 0.00 41.49 2.24
1447 1589 3.214328 AGCCTCGGCACCAATTAATTAG 58.786 45.455 11.02 0.00 44.88 1.73
1448 1590 3.290948 AGCCTCGGCACCAATTAATTA 57.709 42.857 11.02 0.00 44.88 1.40
1494 1636 1.063811 GTCGATCGGGAGGAACGTC 59.936 63.158 16.41 0.00 41.22 4.34
1500 1642 0.178068 AACAATGGTCGATCGGGAGG 59.822 55.000 16.41 3.24 0.00 4.30
1505 1647 1.355971 ACCGAAACAATGGTCGATCG 58.644 50.000 9.36 9.36 39.64 3.69
1506 1648 2.482721 ACAACCGAAACAATGGTCGATC 59.517 45.455 9.66 0.00 39.64 3.69
1507 1649 2.500229 ACAACCGAAACAATGGTCGAT 58.500 42.857 9.66 0.00 39.64 3.59
1508 1650 1.956297 ACAACCGAAACAATGGTCGA 58.044 45.000 9.66 0.00 39.64 4.20
1521 1663 0.390209 ATAACCGGGTCGAACAACCG 60.390 55.000 6.32 7.46 46.79 4.44
1532 1674 1.821216 ACAAAGCAGTCATAACCGGG 58.179 50.000 6.32 0.00 0.00 5.73
1543 1685 4.024556 CAGTTCTACAGGTGAACAAAGCAG 60.025 45.833 8.91 0.00 44.30 4.24
1570 1712 1.668151 GACAACCGGCCAGACAGAC 60.668 63.158 0.00 0.00 0.00 3.51
1572 1714 1.669115 CAGACAACCGGCCAGACAG 60.669 63.158 0.00 0.00 0.00 3.51
1576 1718 1.898574 AAAGCAGACAACCGGCCAG 60.899 57.895 0.00 0.00 36.60 4.85
1606 1749 6.909909 ACAAGTGCTAAACTAATTAAGGTGC 58.090 36.000 0.00 0.00 38.56 5.01
1614 1757 5.539048 ACAGTCGACAAGTGCTAAACTAAT 58.461 37.500 19.50 0.00 38.56 1.73
1617 1760 3.454371 ACAGTCGACAAGTGCTAAACT 57.546 42.857 19.50 0.00 42.60 2.66
1618 1761 3.059800 GGAACAGTCGACAAGTGCTAAAC 60.060 47.826 19.50 0.00 0.00 2.01
1619 1762 3.128349 GGAACAGTCGACAAGTGCTAAA 58.872 45.455 19.50 0.00 0.00 1.85
1620 1763 2.750948 GGAACAGTCGACAAGTGCTAA 58.249 47.619 19.50 0.00 0.00 3.09
1622 1765 0.597637 CGGAACAGTCGACAAGTGCT 60.598 55.000 19.50 0.00 0.00 4.40
1624 1767 1.521423 GAACGGAACAGTCGACAAGTG 59.479 52.381 19.50 10.09 0.00 3.16
1625 1768 1.135527 TGAACGGAACAGTCGACAAGT 59.864 47.619 19.50 13.05 0.00 3.16
1626 1769 1.787155 CTGAACGGAACAGTCGACAAG 59.213 52.381 19.50 12.34 0.00 3.16
1627 1770 1.406180 TCTGAACGGAACAGTCGACAA 59.594 47.619 19.50 0.00 36.81 3.18
1628 1771 1.026584 TCTGAACGGAACAGTCGACA 58.973 50.000 19.50 0.00 36.81 4.35
1629 1772 2.349297 ATCTGAACGGAACAGTCGAC 57.651 50.000 7.70 7.70 36.81 4.20
1630 1773 2.295070 TGAATCTGAACGGAACAGTCGA 59.705 45.455 0.00 0.00 36.81 4.20
1631 1774 2.672714 TGAATCTGAACGGAACAGTCG 58.327 47.619 0.00 0.00 36.81 4.18
1632 1775 4.452455 ACAATGAATCTGAACGGAACAGTC 59.548 41.667 0.00 0.00 36.81 3.51
1698 1872 9.860898 GAGCAAAAACAGATAAATAGGAACATT 57.139 29.630 0.00 0.00 0.00 2.71
1717 1891 3.250762 CAGGAATCGTCACAAGAGCAAAA 59.749 43.478 0.00 0.00 0.00 2.44
1719 1893 2.224281 ACAGGAATCGTCACAAGAGCAA 60.224 45.455 0.00 0.00 0.00 3.91
1790 1965 5.418310 AGTGTTGACAATTTTCACCTACG 57.582 39.130 0.00 0.00 0.00 3.51
1791 1966 6.019881 GCAAAGTGTTGACAATTTTCACCTAC 60.020 38.462 6.80 0.00 40.67 3.18
1792 1967 6.039616 GCAAAGTGTTGACAATTTTCACCTA 58.960 36.000 6.80 0.00 40.67 3.08
1793 1968 4.869861 GCAAAGTGTTGACAATTTTCACCT 59.130 37.500 6.80 0.00 40.67 4.00
1822 1997 8.821894 CGTCAAATTTCCACCTTAATTTCAAAA 58.178 29.630 0.00 0.00 33.04 2.44
1823 1998 7.982354 ACGTCAAATTTCCACCTTAATTTCAAA 59.018 29.630 0.00 0.00 33.04 2.69
1911 2088 6.817765 TCATTTGTTTAGGAAAGTAGCTGG 57.182 37.500 0.00 0.00 0.00 4.85
1947 2125 3.439129 GGAGGATAAAAACTGGTGTTCCG 59.561 47.826 0.00 0.00 34.96 4.30
1952 2130 5.770162 AGTGAAAGGAGGATAAAAACTGGTG 59.230 40.000 0.00 0.00 0.00 4.17
1953 2131 5.953571 AGTGAAAGGAGGATAAAAACTGGT 58.046 37.500 0.00 0.00 0.00 4.00
1954 2132 8.581253 AATAGTGAAAGGAGGATAAAAACTGG 57.419 34.615 0.00 0.00 0.00 4.00
1965 2143 6.822170 GGGTAGTACAAAATAGTGAAAGGAGG 59.178 42.308 2.06 0.00 0.00 4.30
1975 2153 5.039333 CGAACGGAGGGTAGTACAAAATAG 58.961 45.833 2.06 0.00 0.00 1.73
1991 2169 4.100529 GACGACAAGAATTATCGAACGGA 58.899 43.478 0.00 0.00 39.16 4.69
1998 2176 7.288672 AGTTCAAAACGACGACAAGAATTATC 58.711 34.615 0.00 0.00 36.23 1.75
2103 2282 3.937706 CCAGCCTCTACATTCAGTTTCAG 59.062 47.826 0.00 0.00 0.00 3.02
2141 2320 5.966742 CCTTCTTAGAAAAGGTCTTTGGG 57.033 43.478 0.00 0.00 38.79 4.12
2212 2425 9.757227 AAAACAAGCATATGAGATAGTCTAGTC 57.243 33.333 6.97 0.00 0.00 2.59
2370 2585 7.505585 AGGACTGAAGGATCTAGATAGAGTTTG 59.494 40.741 4.89 0.00 35.50 2.93
2371 2586 7.591821 AGGACTGAAGGATCTAGATAGAGTTT 58.408 38.462 4.89 0.00 35.50 2.66
2409 2624 9.988350 AAGCAGATTGTCACGTAAAATAAATAG 57.012 29.630 0.00 0.00 0.00 1.73
2444 2659 4.884744 TGCCTTTGTGTTTCTGCTAAAGTA 59.115 37.500 0.00 0.00 0.00 2.24
2451 2666 1.843992 CAGTGCCTTTGTGTTTCTGC 58.156 50.000 0.00 0.00 0.00 4.26
2475 2692 4.063998 TGGATTGTCAATCTCGATGAGG 57.936 45.455 21.92 0.00 38.01 3.86
2605 2827 0.855598 AATGTGGCCAGCCTATCCAT 59.144 50.000 5.11 0.13 36.94 3.41
2693 2915 4.640201 GTGCATAATAACAGCCTGAAGGAA 59.360 41.667 0.00 0.00 37.39 3.36
2702 2924 3.941483 ACAGGAGTGTGCATAATAACAGC 59.059 43.478 0.00 0.00 34.75 4.40
2730 2952 4.534897 ACAAGGCCCTAACTATAACACAGT 59.465 41.667 0.00 0.00 0.00 3.55
2956 3196 5.682943 TTTTCATTCCAGAACTTGTACCG 57.317 39.130 0.00 0.00 0.00 4.02
3035 3301 2.095372 GCAACAACACCTATAGAACCGC 59.905 50.000 0.00 0.00 0.00 5.68
3087 3353 1.067295 TCTTCAACAGCCCCTGACAT 58.933 50.000 0.00 0.00 35.18 3.06
3088 3354 0.843309 TTCTTCAACAGCCCCTGACA 59.157 50.000 0.00 0.00 35.18 3.58
3089 3355 1.981256 TTTCTTCAACAGCCCCTGAC 58.019 50.000 0.00 0.00 35.18 3.51
3190 3460 8.958119 AGGCTATTAATCGTTTCAAATAGTGA 57.042 30.769 0.00 0.00 35.36 3.41
3358 3628 3.963428 TTCCTAGCCTGTTCTGTCTTC 57.037 47.619 0.00 0.00 0.00 2.87
3407 3677 4.048241 CGAAGGGGAGAATAGTTGAGAC 57.952 50.000 0.00 0.00 0.00 3.36
3499 3773 3.119245 TGGGCTTGAACATAGTAGACGTC 60.119 47.826 7.70 7.70 0.00 4.34
3502 3776 6.759497 AAAATGGGCTTGAACATAGTAGAC 57.241 37.500 0.00 0.00 0.00 2.59
3503 3777 6.826741 GGTAAAATGGGCTTGAACATAGTAGA 59.173 38.462 0.00 0.00 0.00 2.59
3504 3778 6.828785 AGGTAAAATGGGCTTGAACATAGTAG 59.171 38.462 0.00 0.00 0.00 2.57
3505 3779 6.727394 AGGTAAAATGGGCTTGAACATAGTA 58.273 36.000 0.00 0.00 0.00 1.82
3507 3781 6.530019 AAGGTAAAATGGGCTTGAACATAG 57.470 37.500 0.00 0.00 0.00 2.23
3508 3782 6.378848 GGTAAGGTAAAATGGGCTTGAACATA 59.621 38.462 0.00 0.00 0.00 2.29
3510 3784 4.525100 GGTAAGGTAAAATGGGCTTGAACA 59.475 41.667 0.00 0.00 0.00 3.18
3512 3786 5.005628 AGGTAAGGTAAAATGGGCTTGAA 57.994 39.130 0.00 0.00 0.00 2.69
3513 3787 4.668138 AGGTAAGGTAAAATGGGCTTGA 57.332 40.909 0.00 0.00 0.00 3.02
3514 3788 4.159693 GGAAGGTAAGGTAAAATGGGCTTG 59.840 45.833 0.00 0.00 0.00 4.01
3515 3789 4.350245 GGAAGGTAAGGTAAAATGGGCTT 58.650 43.478 0.00 0.00 0.00 4.35
3516 3790 3.309629 GGGAAGGTAAGGTAAAATGGGCT 60.310 47.826 0.00 0.00 0.00 5.19
3517 3791 3.028850 GGGAAGGTAAGGTAAAATGGGC 58.971 50.000 0.00 0.00 0.00 5.36
3519 3793 4.930696 AGTGGGAAGGTAAGGTAAAATGG 58.069 43.478 0.00 0.00 0.00 3.16
3520 3794 6.007703 TCAAGTGGGAAGGTAAGGTAAAATG 58.992 40.000 0.00 0.00 0.00 2.32
3521 3795 6.208840 TCAAGTGGGAAGGTAAGGTAAAAT 57.791 37.500 0.00 0.00 0.00 1.82
3522 3796 5.627135 CTCAAGTGGGAAGGTAAGGTAAAA 58.373 41.667 0.00 0.00 0.00 1.52
3523 3797 4.506095 GCTCAAGTGGGAAGGTAAGGTAAA 60.506 45.833 0.00 0.00 0.00 2.01
3524 3798 3.008704 GCTCAAGTGGGAAGGTAAGGTAA 59.991 47.826 0.00 0.00 0.00 2.85
3525 3799 2.570302 GCTCAAGTGGGAAGGTAAGGTA 59.430 50.000 0.00 0.00 0.00 3.08
3526 3800 1.351350 GCTCAAGTGGGAAGGTAAGGT 59.649 52.381 0.00 0.00 0.00 3.50
3527 3801 1.340114 GGCTCAAGTGGGAAGGTAAGG 60.340 57.143 0.00 0.00 0.00 2.69
3528 3802 1.630878 AGGCTCAAGTGGGAAGGTAAG 59.369 52.381 0.00 0.00 0.00 2.34
3529 3803 1.742308 AGGCTCAAGTGGGAAGGTAA 58.258 50.000 0.00 0.00 0.00 2.85
3530 3804 1.351017 CAAGGCTCAAGTGGGAAGGTA 59.649 52.381 0.00 0.00 0.00 3.08
3531 3805 0.111253 CAAGGCTCAAGTGGGAAGGT 59.889 55.000 0.00 0.00 0.00 3.50
3532 3806 0.111253 ACAAGGCTCAAGTGGGAAGG 59.889 55.000 0.00 0.00 0.00 3.46
3533 3807 1.242076 CACAAGGCTCAAGTGGGAAG 58.758 55.000 6.76 0.00 0.00 3.46
3625 3904 3.041946 GGGACTGAGGAAGGACACATAT 58.958 50.000 0.00 0.00 0.00 1.78
3730 4023 3.255642 ACCACAGTAAACATCCAATGCAC 59.744 43.478 0.00 0.00 0.00 4.57
3747 4040 5.278266 GCTACTAAACAAAGATGCAACCACA 60.278 40.000 0.00 0.00 0.00 4.17
3748 4041 5.154222 GCTACTAAACAAAGATGCAACCAC 58.846 41.667 0.00 0.00 0.00 4.16
3756 4049 6.409704 TGCTCTGATGCTACTAAACAAAGAT 58.590 36.000 0.00 0.00 0.00 2.40
3757 4050 5.793817 TGCTCTGATGCTACTAAACAAAGA 58.206 37.500 0.00 0.00 0.00 2.52
3758 4051 6.674694 ATGCTCTGATGCTACTAAACAAAG 57.325 37.500 0.00 0.00 0.00 2.77
3761 4062 5.491070 ACAATGCTCTGATGCTACTAAACA 58.509 37.500 0.00 0.00 0.00 2.83
3771 4072 4.458295 AGTCAAAGGAACAATGCTCTGATG 59.542 41.667 0.00 0.00 0.00 3.07
3775 4076 4.946157 CCATAGTCAAAGGAACAATGCTCT 59.054 41.667 0.00 0.00 0.00 4.09
3782 4083 3.517296 TTGCCCATAGTCAAAGGAACA 57.483 42.857 0.00 0.00 0.00 3.18
3795 4096 2.726821 AGATCACGATTGTTTGCCCAT 58.273 42.857 0.00 0.00 0.00 4.00
3796 4097 2.198827 AGATCACGATTGTTTGCCCA 57.801 45.000 0.00 0.00 0.00 5.36
3917 4218 1.885560 TGTTACTAGCAGCGGCAAAA 58.114 45.000 12.44 0.00 44.61 2.44
3950 4255 3.060473 GTCGACTAAATACATGCCGAAGC 60.060 47.826 8.70 0.00 40.48 3.86
3956 4261 4.794762 TGTACGTGTCGACTAAATACATGC 59.205 41.667 17.92 0.00 34.23 4.06
4034 4339 6.486253 TCAAGCAAGTGTAGAAAATAGCAG 57.514 37.500 0.00 0.00 0.00 4.24
4039 4344 9.899226 GTTAGAAATCAAGCAAGTGTAGAAAAT 57.101 29.630 0.00 0.00 0.00 1.82
4040 4345 8.349983 GGTTAGAAATCAAGCAAGTGTAGAAAA 58.650 33.333 0.00 0.00 0.00 2.29
4041 4346 7.719633 AGGTTAGAAATCAAGCAAGTGTAGAAA 59.280 33.333 0.00 0.00 0.00 2.52
4144 4449 5.630061 TCGCAACAAAACACATCTATCATG 58.370 37.500 0.00 0.00 0.00 3.07
4173 4478 4.811557 GGAAGTTCAGCTAATATCAGCGTT 59.188 41.667 5.01 0.00 46.52 4.84
4217 4522 3.504906 TCATACTGCATAGTACTACGGGC 59.495 47.826 4.31 10.06 41.92 6.13
4218 4523 4.082895 GGTCATACTGCATAGTACTACGGG 60.083 50.000 4.31 0.00 41.92 5.28
4219 4524 4.378149 CGGTCATACTGCATAGTACTACGG 60.378 50.000 4.31 1.24 41.92 4.02
4220 4525 4.450080 TCGGTCATACTGCATAGTACTACG 59.550 45.833 4.31 0.00 41.92 3.51
4221 4526 5.936686 TCGGTCATACTGCATAGTACTAC 57.063 43.478 4.31 0.00 41.92 2.73
4222 4527 6.293698 TCTTCGGTCATACTGCATAGTACTA 58.706 40.000 4.77 4.77 41.92 1.82
4223 4528 5.131067 TCTTCGGTCATACTGCATAGTACT 58.869 41.667 0.00 0.00 41.92 2.73
4224 4529 5.434352 TCTTCGGTCATACTGCATAGTAC 57.566 43.478 0.00 0.00 41.92 2.73
4225 4530 5.593095 AGTTCTTCGGTCATACTGCATAGTA 59.407 40.000 0.00 0.00 43.19 1.82
4226 4531 4.402793 AGTTCTTCGGTCATACTGCATAGT 59.597 41.667 0.00 0.00 40.99 2.12
4227 4532 4.742167 CAGTTCTTCGGTCATACTGCATAG 59.258 45.833 0.00 0.00 31.01 2.23
4228 4533 4.159693 ACAGTTCTTCGGTCATACTGCATA 59.840 41.667 0.00 0.00 39.77 3.14
4229 4534 3.055819 ACAGTTCTTCGGTCATACTGCAT 60.056 43.478 0.00 0.00 39.77 3.96
4230 4535 2.299013 ACAGTTCTTCGGTCATACTGCA 59.701 45.455 0.00 0.00 39.77 4.41
4231 4536 2.668457 CACAGTTCTTCGGTCATACTGC 59.332 50.000 0.00 0.00 39.77 4.40
4232 4537 3.675225 CACACAGTTCTTCGGTCATACTG 59.325 47.826 0.00 0.00 41.42 2.74
4233 4538 3.572682 TCACACAGTTCTTCGGTCATACT 59.427 43.478 0.00 0.00 0.00 2.12
4234 4539 3.909430 TCACACAGTTCTTCGGTCATAC 58.091 45.455 0.00 0.00 0.00 2.39
4235 4540 4.594123 TTCACACAGTTCTTCGGTCATA 57.406 40.909 0.00 0.00 0.00 2.15
4236 4541 3.469008 TTCACACAGTTCTTCGGTCAT 57.531 42.857 0.00 0.00 0.00 3.06
4237 4542 2.971660 TTCACACAGTTCTTCGGTCA 57.028 45.000 0.00 0.00 0.00 4.02
4238 4543 3.390135 TCATTCACACAGTTCTTCGGTC 58.610 45.455 0.00 0.00 0.00 4.79
4239 4544 3.469008 TCATTCACACAGTTCTTCGGT 57.531 42.857 0.00 0.00 0.00 4.69
4240 4545 3.425359 GCATCATTCACACAGTTCTTCGG 60.425 47.826 0.00 0.00 0.00 4.30
4241 4546 3.425359 GGCATCATTCACACAGTTCTTCG 60.425 47.826 0.00 0.00 0.00 3.79
4242 4547 3.755378 AGGCATCATTCACACAGTTCTTC 59.245 43.478 0.00 0.00 0.00 2.87
4243 4548 3.504906 CAGGCATCATTCACACAGTTCTT 59.495 43.478 0.00 0.00 0.00 2.52
4244 4549 3.079578 CAGGCATCATTCACACAGTTCT 58.920 45.455 0.00 0.00 0.00 3.01
4245 4550 2.816087 ACAGGCATCATTCACACAGTTC 59.184 45.455 0.00 0.00 0.00 3.01
4246 4551 2.867624 ACAGGCATCATTCACACAGTT 58.132 42.857 0.00 0.00 0.00 3.16
4247 4552 2.574006 ACAGGCATCATTCACACAGT 57.426 45.000 0.00 0.00 0.00 3.55
4248 4553 3.603532 ACTACAGGCATCATTCACACAG 58.396 45.455 0.00 0.00 0.00 3.66
4249 4554 3.701205 ACTACAGGCATCATTCACACA 57.299 42.857 0.00 0.00 0.00 3.72
4250 4555 4.759782 ACTACTACAGGCATCATTCACAC 58.240 43.478 0.00 0.00 0.00 3.82
4251 4556 6.515832 CATACTACTACAGGCATCATTCACA 58.484 40.000 0.00 0.00 0.00 3.58
4252 4557 5.406780 GCATACTACTACAGGCATCATTCAC 59.593 44.000 0.00 0.00 0.00 3.18
4253 4558 5.070313 TGCATACTACTACAGGCATCATTCA 59.930 40.000 0.00 0.00 0.00 2.57
4254 4559 5.406780 GTGCATACTACTACAGGCATCATTC 59.593 44.000 0.00 0.00 33.43 2.67
4255 4560 5.070981 AGTGCATACTACTACAGGCATCATT 59.929 40.000 0.00 0.00 34.74 2.57
4256 4561 4.590647 AGTGCATACTACTACAGGCATCAT 59.409 41.667 0.00 0.00 34.74 2.45
4257 4562 3.960755 AGTGCATACTACTACAGGCATCA 59.039 43.478 0.00 0.00 34.74 3.07
4258 4563 4.592485 AGTGCATACTACTACAGGCATC 57.408 45.455 0.00 0.00 34.74 3.91
4259 4564 5.775195 TCATAGTGCATACTACTACAGGCAT 59.225 40.000 0.00 0.00 41.92 4.40
4260 4565 5.009710 GTCATAGTGCATACTACTACAGGCA 59.990 44.000 0.00 0.00 41.92 4.75
4261 4566 5.462405 GTCATAGTGCATACTACTACAGGC 58.538 45.833 0.00 0.00 41.92 4.85
4282 4587 3.390135 TCATTCACACAGTTCTTCGGTC 58.610 45.455 0.00 0.00 0.00 4.79
4287 4592 3.504906 CAGGCATCATTCACACAGTTCTT 59.495 43.478 0.00 0.00 0.00 2.52
4316 4622 5.359756 TCAGAATTCACATCTAACGGGATG 58.640 41.667 8.44 11.76 45.96 3.51
4345 4651 4.518970 TGCTAACTTGAAGATCAACAACCC 59.481 41.667 0.00 0.00 32.21 4.11
4347 4653 7.306225 GCTTTTGCTAACTTGAAGATCAACAAC 60.306 37.037 0.00 0.00 43.35 3.32
4348 4654 6.697019 GCTTTTGCTAACTTGAAGATCAACAA 59.303 34.615 0.00 0.00 43.35 2.83
4368 4825 6.374417 TCCTATAGGACAACAGAAGCTTTT 57.626 37.500 18.00 0.00 39.78 2.27
4417 4876 2.766828 GCATACAGGGAAGGTACAGAGT 59.233 50.000 0.00 0.00 0.00 3.24
4491 4963 0.969894 ATATCCTACCGTGGCAGAGC 59.030 55.000 0.00 0.00 0.00 4.09
4492 4964 2.230025 CTGATATCCTACCGTGGCAGAG 59.770 54.545 0.00 0.00 0.00 3.35
4493 4965 2.239400 CTGATATCCTACCGTGGCAGA 58.761 52.381 0.00 0.00 0.00 4.26
4500 4980 3.440872 GGAGCTACACTGATATCCTACCG 59.559 52.174 0.00 0.00 0.00 4.02
4501 4981 3.764972 GGGAGCTACACTGATATCCTACC 59.235 52.174 0.00 0.00 0.00 3.18
4509 4989 2.912956 TGAAAAGGGGAGCTACACTGAT 59.087 45.455 0.00 0.00 0.00 2.90
4540 5024 6.987403 TTTTTGCCCTTATAGTTTTCAGGT 57.013 33.333 0.00 0.00 0.00 4.00
4645 5148 4.852104 CCGTCCTTAATATCATTCGTCGAG 59.148 45.833 0.00 0.00 0.00 4.04
4650 5153 7.290842 CAATTGACCGTCCTTAATATCATTCG 58.709 38.462 0.00 0.00 0.00 3.34
4651 5154 7.444183 TCCAATTGACCGTCCTTAATATCATTC 59.556 37.037 7.12 0.00 0.00 2.67
4653 5156 6.837312 TCCAATTGACCGTCCTTAATATCAT 58.163 36.000 7.12 0.00 0.00 2.45
4654 5157 6.241882 TCCAATTGACCGTCCTTAATATCA 57.758 37.500 7.12 0.00 0.00 2.15
4655 5158 6.934645 TCATCCAATTGACCGTCCTTAATATC 59.065 38.462 7.12 0.00 0.00 1.63
4656 5159 6.837312 TCATCCAATTGACCGTCCTTAATAT 58.163 36.000 7.12 0.00 0.00 1.28
4658 5161 5.110814 TCATCCAATTGACCGTCCTTAAT 57.889 39.130 7.12 0.00 0.00 1.40
4659 5162 4.561500 TCATCCAATTGACCGTCCTTAA 57.438 40.909 7.12 0.00 0.00 1.85
4660 5163 4.561500 TTCATCCAATTGACCGTCCTTA 57.438 40.909 7.12 0.00 0.00 2.69
4661 5164 3.433306 TTCATCCAATTGACCGTCCTT 57.567 42.857 7.12 0.00 0.00 3.36
4662 5165 3.054434 TCATTCATCCAATTGACCGTCCT 60.054 43.478 7.12 0.00 0.00 3.85
4663 5166 3.065371 GTCATTCATCCAATTGACCGTCC 59.935 47.826 7.12 0.00 0.00 4.79
4664 5167 3.941483 AGTCATTCATCCAATTGACCGTC 59.059 43.478 7.12 0.00 0.00 4.79
4665 5168 3.955471 AGTCATTCATCCAATTGACCGT 58.045 40.909 7.12 0.00 0.00 4.83
4666 5169 4.970662 AAGTCATTCATCCAATTGACCG 57.029 40.909 7.12 0.00 0.00 4.79
4667 5170 6.327934 CAGAAAGTCATTCATCCAATTGACC 58.672 40.000 7.12 0.00 40.72 4.02
4671 5174 6.012113 TCACCAGAAAGTCATTCATCCAATT 58.988 36.000 0.00 0.00 40.72 2.32
4686 5189 7.815840 TTGTCAGAAATGTTATCACCAGAAA 57.184 32.000 0.00 0.00 0.00 2.52
4715 5218 1.338136 ATCCCCAGCGGAGTCGATTT 61.338 55.000 0.00 0.00 46.60 2.17
4716 5219 1.749334 GATCCCCAGCGGAGTCGATT 61.749 60.000 0.00 0.00 46.60 3.34
4820 5343 9.994432 GTTCATTTAACCTAATCTGATGAACAG 57.006 33.333 16.84 0.00 45.38 3.16
4863 5386 9.308000 AGGTCATGAATTTGTCATTTAACCTAA 57.692 29.630 0.00 0.00 45.13 2.69
4864 5387 8.877864 AGGTCATGAATTTGTCATTTAACCTA 57.122 30.769 0.00 0.00 45.13 3.08
4865 5388 7.781324 AGGTCATGAATTTGTCATTTAACCT 57.219 32.000 0.00 8.16 45.13 3.50
4866 5389 9.573133 CTAAGGTCATGAATTTGTCATTTAACC 57.427 33.333 0.00 0.00 45.13 2.85
4918 5447 7.081976 GGCTCACGTGTCAACTTATTTATTTT 58.918 34.615 16.51 0.00 0.00 1.82
4920 5449 5.703592 TGGCTCACGTGTCAACTTATTTATT 59.296 36.000 16.51 0.00 0.00 1.40
4921 5450 5.121768 GTGGCTCACGTGTCAACTTATTTAT 59.878 40.000 16.51 0.00 0.00 1.40
4922 5451 4.449743 GTGGCTCACGTGTCAACTTATTTA 59.550 41.667 16.51 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.