Multiple sequence alignment - TraesCS1A01G335800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G335800 chr1A 100.000 3346 0 0 1 3346 522883831 522880486 0.000000e+00 6180
1 TraesCS1A01G335800 chr1A 84.607 877 96 22 976 1820 522510885 522510016 0.000000e+00 835
2 TraesCS1A01G335800 chr1A 86.486 592 72 4 922 1512 522536005 522535421 0.000000e+00 643
3 TraesCS1A01G335800 chr1A 83.820 445 61 7 1920 2360 522515433 522514996 2.400000e-111 412
4 TraesCS1A01G335800 chr1A 87.853 354 33 7 2994 3345 522538554 522538209 1.120000e-109 407
5 TraesCS1A01G335800 chr1A 84.597 409 58 3 1958 2361 522534994 522534586 5.200000e-108 401
6 TraesCS1A01G335800 chr1A 87.246 345 41 3 1512 1856 522535394 522535053 1.130000e-104 390
7 TraesCS1A01G335800 chr1D 94.903 981 37 9 1513 2488 427596378 427595406 0.000000e+00 1522
8 TraesCS1A01G335800 chr1D 95.387 607 21 2 912 1513 427597009 427596405 0.000000e+00 959
9 TraesCS1A01G335800 chr1D 84.694 882 104 18 970 1823 427332275 427331397 0.000000e+00 852
10 TraesCS1A01G335800 chr1D 83.209 935 120 14 916 1820 427319600 427318673 0.000000e+00 822
11 TraesCS1A01G335800 chr1D 89.286 616 41 12 288 890 427597840 427597237 0.000000e+00 749
12 TraesCS1A01G335800 chr1D 86.151 556 69 4 958 1512 427372367 427371819 7.990000e-166 593
13 TraesCS1A01G335800 chr1D 93.878 392 22 2 2956 3346 427595407 427595017 1.030000e-164 590
14 TraesCS1A01G335800 chr1D 84.719 445 61 7 1918 2360 427331348 427330909 3.960000e-119 438
15 TraesCS1A01G335800 chr1D 84.597 409 58 4 1958 2361 427371392 427370984 5.200000e-108 401
16 TraesCS1A01G335800 chr1D 87.826 345 39 3 1512 1856 427371792 427371451 5.200000e-108 401
17 TraesCS1A01G335800 chr1D 91.532 248 12 4 1 244 427598080 427597838 1.920000e-87 333
18 TraesCS1A01G335800 chr1D 91.724 145 10 2 3201 3345 427382433 427382291 2.040000e-47 200
19 TraesCS1A01G335800 chr1D 91.724 145 10 2 3201 3345 427387084 427386942 2.040000e-47 200
20 TraesCS1A01G335800 chr1D 91.034 145 11 2 3201 3345 427377774 427377632 9.470000e-46 195
21 TraesCS1A01G335800 chr1D 91.034 145 11 2 3201 3345 427380101 427379959 9.470000e-46 195
22 TraesCS1A01G335800 chr1D 90.909 143 12 1 3201 3343 427384758 427384617 1.230000e-44 191
23 TraesCS1A01G335800 chr1D 89.041 146 13 3 3201 3345 427400583 427400440 9.540000e-41 178
24 TraesCS1A01G335800 chr1B 94.710 983 35 12 1511 2488 579778325 579777355 0.000000e+00 1511
25 TraesCS1A01G335800 chr1B 88.445 926 54 19 1 894 579780071 579779167 0.000000e+00 1068
26 TraesCS1A01G335800 chr1B 95.973 596 17 4 918 1513 579778938 579778350 0.000000e+00 961
27 TraesCS1A01G335800 chr1B 82.824 949 112 25 916 1819 577829371 577828429 0.000000e+00 802
28 TraesCS1A01G335800 chr1B 96.312 461 17 0 2493 2953 579979964 579980424 0.000000e+00 758
29 TraesCS1A01G335800 chr1B 83.195 601 99 2 912 1512 578045525 578044927 1.750000e-152 549
30 TraesCS1A01G335800 chr1B 89.000 400 19 8 2956 3346 579777356 579776973 3.910000e-129 472
31 TraesCS1A01G335800 chr1B 83.234 501 52 12 1384 1856 579001935 579001439 6.630000e-117 431
32 TraesCS1A01G335800 chr1B 86.301 365 47 1 2000 2361 579001355 579000991 8.700000e-106 394
33 TraesCS1A01G335800 chr1B 88.356 146 15 2 3201 3345 579004865 579004721 1.230000e-39 174
34 TraesCS1A01G335800 chr5A 97.391 460 11 1 2498 2957 838439 838897 0.000000e+00 782
35 TraesCS1A01G335800 chr3D 96.963 461 13 1 2493 2953 578450231 578449772 0.000000e+00 773
36 TraesCS1A01G335800 chr2A 96.963 461 13 1 2493 2953 5314793 5314334 0.000000e+00 773
37 TraesCS1A01G335800 chr7B 96.746 461 15 0 2493 2953 697618185 697618645 0.000000e+00 769
38 TraesCS1A01G335800 chr7A 96.336 464 16 1 2490 2953 49508188 49508650 0.000000e+00 761
39 TraesCS1A01G335800 chr2D 96.137 466 16 2 2489 2953 492996653 492997117 0.000000e+00 760
40 TraesCS1A01G335800 chr3A 96.121 464 17 1 2490 2953 700884377 700884839 0.000000e+00 756
41 TraesCS1A01G335800 chr4A 95.923 466 18 1 2488 2953 636048789 636048325 0.000000e+00 754
42 TraesCS1A01G335800 chr5D 80.797 979 147 24 912 1856 523314859 523313888 0.000000e+00 728
43 TraesCS1A01G335800 chr5D 80.695 979 148 24 912 1856 523187670 523186699 0.000000e+00 723
44 TraesCS1A01G335800 chr5D 85.045 448 62 4 1920 2366 523186667 523186224 5.090000e-123 451
45 TraesCS1A01G335800 chr5D 85.045 448 61 5 1920 2366 523313856 523313414 5.090000e-123 451


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G335800 chr1A 522880486 522883831 3345 True 6180.00 6180 100.000000 1 3346 1 chr1A.!!$R3 3345
1 TraesCS1A01G335800 chr1A 522510016 522510885 869 True 835.00 835 84.607000 976 1820 1 chr1A.!!$R1 844
2 TraesCS1A01G335800 chr1A 522534586 522538554 3968 True 460.25 643 86.545500 922 3345 4 chr1A.!!$R4 2423
3 TraesCS1A01G335800 chr1D 427595017 427598080 3063 True 830.60 1522 92.997200 1 3346 5 chr1D.!!$R6 3345
4 TraesCS1A01G335800 chr1D 427318673 427319600 927 True 822.00 822 83.209000 916 1820 1 chr1D.!!$R1 904
5 TraesCS1A01G335800 chr1D 427330909 427332275 1366 True 645.00 852 84.706500 970 2360 2 chr1D.!!$R3 1390
6 TraesCS1A01G335800 chr1D 427370984 427372367 1383 True 465.00 593 86.191333 958 2361 3 chr1D.!!$R4 1403
7 TraesCS1A01G335800 chr1B 579776973 579780071 3098 True 1003.00 1511 92.032000 1 3346 4 chr1B.!!$R4 3345
8 TraesCS1A01G335800 chr1B 577828429 577829371 942 True 802.00 802 82.824000 916 1819 1 chr1B.!!$R1 903
9 TraesCS1A01G335800 chr1B 578044927 578045525 598 True 549.00 549 83.195000 912 1512 1 chr1B.!!$R2 600
10 TraesCS1A01G335800 chr1B 579000991 579004865 3874 True 333.00 431 85.963667 1384 3345 3 chr1B.!!$R3 1961
11 TraesCS1A01G335800 chr5D 523313414 523314859 1445 True 589.50 728 82.921000 912 2366 2 chr5D.!!$R2 1454
12 TraesCS1A01G335800 chr5D 523186224 523187670 1446 True 587.00 723 82.870000 912 2366 2 chr5D.!!$R1 1454

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 857 0.106419 TGTGGCCGGAAAATATCCCC 60.106 55.000 5.05 0.0 46.39 4.81 F
820 858 1.149627 TGGCCGGAAAATATCCCCG 59.850 57.895 5.05 0.0 46.39 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 3386 1.031571 TAATTGCCTTGGCAGCTCCG 61.032 55.000 14.33 0.0 37.80 4.63 R
2507 4262 1.141234 GGTACCGTGTAGCCTGAGC 59.859 63.158 0.00 0.0 40.32 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.728102 CCAGGCGGCGTAACGTGA 62.728 66.667 9.37 0.00 35.98 4.35
135 140 4.559063 CAGGGCCATGGGAGCTCG 62.559 72.222 15.13 0.00 35.22 5.03
257 266 8.840200 ATTAGGTGTGGATTAGATATCCGTAT 57.160 34.615 0.00 0.00 41.03 3.06
383 400 4.849813 TGAGTGGATCAATCTTGGTCAT 57.150 40.909 5.61 0.00 40.07 3.06
391 408 4.212143 TCAATCTTGGTCATCCTGAGTG 57.788 45.455 0.00 0.00 35.85 3.51
445 464 0.238289 CTTTCACCACCATGTGCGTC 59.762 55.000 0.00 0.00 36.17 5.19
446 465 1.169661 TTTCACCACCATGTGCGTCC 61.170 55.000 0.00 0.00 36.17 4.79
448 467 1.675310 CACCACCATGTGCGTCCAT 60.675 57.895 0.00 0.00 31.34 3.41
449 468 1.675310 ACCACCATGTGCGTCCATG 60.675 57.895 8.83 8.83 41.52 3.66
467 486 5.238214 GTCCATGCATTCTCACTATTTCTCC 59.762 44.000 0.00 0.00 0.00 3.71
481 500 3.759527 TTTCTCCGTCTGAGTCGTATG 57.240 47.619 0.00 0.00 42.12 2.39
517 539 0.898789 AATCAGACACCCGACCGAGT 60.899 55.000 0.00 0.00 0.00 4.18
518 540 1.313812 ATCAGACACCCGACCGAGTC 61.314 60.000 0.00 0.00 0.00 3.36
539 563 4.025396 GTCGATGTCTCTATTTGGCATGTG 60.025 45.833 0.00 0.00 0.00 3.21
570 594 1.737793 CTAACCGACACCCAAATCTGC 59.262 52.381 0.00 0.00 0.00 4.26
612 637 2.566913 ACAAATGGCGACTGTACAACA 58.433 42.857 0.00 0.00 0.00 3.33
619 644 2.030540 GGCGACTGTACAACACTACAGA 60.031 50.000 12.25 0.00 44.49 3.41
631 656 6.327934 ACAACACTACAGACGTCCAATATAC 58.672 40.000 13.01 0.00 0.00 1.47
651 681 1.265454 GGACCACAGGTAGACAGGGG 61.265 65.000 0.00 0.00 35.25 4.79
652 682 1.229529 ACCACAGGTAGACAGGGGG 60.230 63.158 0.00 0.00 32.11 5.40
818 856 1.681264 CTTGTGGCCGGAAAATATCCC 59.319 52.381 5.05 0.00 46.39 3.85
819 857 0.106419 TGTGGCCGGAAAATATCCCC 60.106 55.000 5.05 0.00 46.39 4.81
820 858 1.149627 TGGCCGGAAAATATCCCCG 59.850 57.895 5.05 0.00 46.39 5.73
1003 2638 6.313905 GTGTATATATAGACCAACCAGCATGC 59.686 42.308 10.51 10.51 31.97 4.06
1015 2650 1.410004 CAGCATGCCTCCAATCCATT 58.590 50.000 15.66 0.00 0.00 3.16
1077 2712 3.370315 CCATCCAGGATAAGCATAGCTCC 60.370 52.174 0.00 0.00 37.50 4.70
1182 2817 1.265236 TGCAAATCCCCAACACCATC 58.735 50.000 0.00 0.00 0.00 3.51
1307 2942 1.522668 TCAGGCATCTTTGTTGTCCG 58.477 50.000 0.00 0.00 0.00 4.79
1538 3283 3.211045 ACAACCAGCTAATCAACAACGT 58.789 40.909 0.00 0.00 0.00 3.99
1641 3386 2.512515 GTCGCTGGAGGTCATGGC 60.513 66.667 0.00 0.00 0.00 4.40
1773 3518 4.776743 CTGGCGATATGTTTAAGCACATC 58.223 43.478 0.81 0.81 38.40 3.06
1973 3720 8.082242 CCACTAAAGCAAGCTAACTAAATTTGT 58.918 33.333 0.00 0.00 0.00 2.83
2004 3753 6.715347 AAACCCTACAATTCCAGCATTATC 57.285 37.500 0.00 0.00 0.00 1.75
2163 3918 9.295825 TGATAATTATTGATATGGTGGTTGGAC 57.704 33.333 0.00 0.00 0.00 4.02
2488 4243 1.557099 TGATCTACAGTTCCACGCCT 58.443 50.000 0.00 0.00 0.00 5.52
2489 4244 1.899814 TGATCTACAGTTCCACGCCTT 59.100 47.619 0.00 0.00 0.00 4.35
2490 4245 2.271800 GATCTACAGTTCCACGCCTTG 58.728 52.381 0.00 0.00 0.00 3.61
2492 4247 0.673644 CTACAGTTCCACGCCTTGGG 60.674 60.000 0.00 0.00 46.92 4.12
2493 4248 1.412453 TACAGTTCCACGCCTTGGGT 61.412 55.000 0.00 0.00 46.92 4.51
2494 4249 2.113139 AGTTCCACGCCTTGGGTG 59.887 61.111 4.47 4.47 46.92 4.61
2500 4255 2.277404 ACGCCTTGGGTGTGGTTT 59.723 55.556 1.73 0.00 45.43 3.27
2501 4256 1.380650 ACGCCTTGGGTGTGGTTTT 60.381 52.632 1.73 0.00 45.43 2.43
2502 4257 1.362355 CGCCTTGGGTGTGGTTTTC 59.638 57.895 0.00 0.00 0.00 2.29
2503 4258 1.106944 CGCCTTGGGTGTGGTTTTCT 61.107 55.000 0.00 0.00 0.00 2.52
2504 4259 0.389025 GCCTTGGGTGTGGTTTTCTG 59.611 55.000 0.00 0.00 0.00 3.02
2505 4260 1.775385 CCTTGGGTGTGGTTTTCTGT 58.225 50.000 0.00 0.00 0.00 3.41
2506 4261 2.938838 CCTTGGGTGTGGTTTTCTGTA 58.061 47.619 0.00 0.00 0.00 2.74
2507 4262 2.884639 CCTTGGGTGTGGTTTTCTGTAG 59.115 50.000 0.00 0.00 0.00 2.74
2508 4263 1.975660 TGGGTGTGGTTTTCTGTAGC 58.024 50.000 0.00 0.00 0.00 3.58
2509 4264 1.493022 TGGGTGTGGTTTTCTGTAGCT 59.507 47.619 0.00 0.00 0.00 3.32
2510 4265 2.152016 GGGTGTGGTTTTCTGTAGCTC 58.848 52.381 0.00 0.00 0.00 4.09
2511 4266 2.486548 GGGTGTGGTTTTCTGTAGCTCA 60.487 50.000 0.00 0.00 0.00 4.26
2512 4267 2.808543 GGTGTGGTTTTCTGTAGCTCAG 59.191 50.000 0.00 0.00 44.85 3.35
2513 4268 2.808543 GTGTGGTTTTCTGTAGCTCAGG 59.191 50.000 11.63 0.00 43.76 3.86
2514 4269 1.807142 GTGGTTTTCTGTAGCTCAGGC 59.193 52.381 11.63 0.00 43.76 4.85
2524 4279 4.808649 GCTCAGGCTACACGGTAC 57.191 61.111 0.00 0.00 35.22 3.34
2525 4280 1.141234 GCTCAGGCTACACGGTACC 59.859 63.158 0.16 0.16 35.22 3.34
2526 4281 1.814527 CTCAGGCTACACGGTACCC 59.185 63.158 6.25 0.00 0.00 3.69
2527 4282 1.673808 CTCAGGCTACACGGTACCCC 61.674 65.000 6.25 0.00 0.00 4.95
2528 4283 1.684734 CAGGCTACACGGTACCCCT 60.685 63.158 6.25 2.50 0.00 4.79
2529 4284 1.079804 AGGCTACACGGTACCCCTT 59.920 57.895 6.25 0.00 0.00 3.95
2530 4285 0.336048 AGGCTACACGGTACCCCTTA 59.664 55.000 6.25 0.00 0.00 2.69
2531 4286 1.062658 AGGCTACACGGTACCCCTTAT 60.063 52.381 6.25 0.00 0.00 1.73
2532 4287 1.342496 GGCTACACGGTACCCCTTATC 59.658 57.143 6.25 0.00 0.00 1.75
2533 4288 2.314246 GCTACACGGTACCCCTTATCT 58.686 52.381 6.25 0.00 0.00 1.98
2534 4289 2.697229 GCTACACGGTACCCCTTATCTT 59.303 50.000 6.25 0.00 0.00 2.40
2535 4290 3.133542 GCTACACGGTACCCCTTATCTTT 59.866 47.826 6.25 0.00 0.00 2.52
2536 4291 3.622166 ACACGGTACCCCTTATCTTTG 57.378 47.619 6.25 0.00 0.00 2.77
2537 4292 2.285977 CACGGTACCCCTTATCTTTGC 58.714 52.381 6.25 0.00 0.00 3.68
2538 4293 1.211212 ACGGTACCCCTTATCTTTGCC 59.789 52.381 6.25 0.00 0.00 4.52
2539 4294 1.210967 CGGTACCCCTTATCTTTGCCA 59.789 52.381 6.25 0.00 0.00 4.92
2540 4295 2.158667 CGGTACCCCTTATCTTTGCCAT 60.159 50.000 6.25 0.00 0.00 4.40
2541 4296 3.487372 GGTACCCCTTATCTTTGCCATC 58.513 50.000 0.00 0.00 0.00 3.51
2542 4297 2.755952 ACCCCTTATCTTTGCCATCC 57.244 50.000 0.00 0.00 0.00 3.51
2543 4298 1.929494 ACCCCTTATCTTTGCCATCCA 59.071 47.619 0.00 0.00 0.00 3.41
2544 4299 2.519691 ACCCCTTATCTTTGCCATCCAT 59.480 45.455 0.00 0.00 0.00 3.41
2545 4300 3.160269 CCCCTTATCTTTGCCATCCATC 58.840 50.000 0.00 0.00 0.00 3.51
2546 4301 3.181425 CCCCTTATCTTTGCCATCCATCT 60.181 47.826 0.00 0.00 0.00 2.90
2547 4302 4.043310 CCCCTTATCTTTGCCATCCATCTA 59.957 45.833 0.00 0.00 0.00 1.98
2548 4303 5.281401 CCCCTTATCTTTGCCATCCATCTAT 60.281 44.000 0.00 0.00 0.00 1.98
2549 4304 5.651139 CCCTTATCTTTGCCATCCATCTATG 59.349 44.000 0.00 0.00 0.00 2.23
2550 4305 5.125097 CCTTATCTTTGCCATCCATCTATGC 59.875 44.000 0.00 0.00 0.00 3.14
2551 4306 3.581265 TCTTTGCCATCCATCTATGCA 57.419 42.857 0.00 0.00 0.00 3.96
2552 4307 4.108501 TCTTTGCCATCCATCTATGCAT 57.891 40.909 3.79 3.79 0.00 3.96
2553 4308 4.077108 TCTTTGCCATCCATCTATGCATC 58.923 43.478 0.19 0.00 0.00 3.91
2554 4309 3.512219 TTGCCATCCATCTATGCATCA 57.488 42.857 0.19 0.00 0.00 3.07
2555 4310 3.512219 TGCCATCCATCTATGCATCAA 57.488 42.857 0.19 0.00 0.00 2.57
2556 4311 3.418047 TGCCATCCATCTATGCATCAAG 58.582 45.455 0.19 0.00 0.00 3.02
2557 4312 3.073356 TGCCATCCATCTATGCATCAAGA 59.927 43.478 0.19 1.11 0.00 3.02
2558 4313 4.263771 TGCCATCCATCTATGCATCAAGAT 60.264 41.667 0.19 4.01 32.63 2.40
2559 4314 4.335874 GCCATCCATCTATGCATCAAGATC 59.664 45.833 0.19 0.00 29.93 2.75
2560 4315 4.882427 CCATCCATCTATGCATCAAGATCC 59.118 45.833 0.19 0.00 29.93 3.36
2561 4316 4.198028 TCCATCTATGCATCAAGATCCG 57.802 45.455 0.19 0.00 29.93 4.18
2562 4317 3.580022 TCCATCTATGCATCAAGATCCGT 59.420 43.478 0.19 0.00 29.93 4.69
2563 4318 3.683340 CCATCTATGCATCAAGATCCGTG 59.317 47.826 0.19 0.00 29.93 4.94
2564 4319 2.759191 TCTATGCATCAAGATCCGTGC 58.241 47.619 0.19 0.00 38.05 5.34
2566 4321 3.246403 TGCATCAAGATCCGTGCAA 57.754 47.368 8.80 0.00 43.83 4.08
2567 4322 1.532523 TGCATCAAGATCCGTGCAAA 58.467 45.000 8.80 0.00 43.83 3.68
2568 4323 1.199789 TGCATCAAGATCCGTGCAAAC 59.800 47.619 8.80 0.00 43.83 2.93
2569 4324 1.199789 GCATCAAGATCCGTGCAAACA 59.800 47.619 0.00 0.00 37.52 2.83
2570 4325 2.855180 CATCAAGATCCGTGCAAACAC 58.145 47.619 0.00 0.00 43.76 3.32
2602 4357 5.614923 TTTTGTTTCTCTCAAACGACACA 57.385 34.783 0.00 0.00 35.05 3.72
2603 4358 5.614923 TTTGTTTCTCTCAAACGACACAA 57.385 34.783 0.00 0.00 30.54 3.33
2604 4359 4.593597 TGTTTCTCTCAAACGACACAAC 57.406 40.909 0.00 0.00 33.05 3.32
2605 4360 3.997681 TGTTTCTCTCAAACGACACAACA 59.002 39.130 0.00 0.00 33.05 3.33
2606 4361 4.634004 TGTTTCTCTCAAACGACACAACAT 59.366 37.500 0.00 0.00 33.05 2.71
2607 4362 5.813157 TGTTTCTCTCAAACGACACAACATA 59.187 36.000 0.00 0.00 33.05 2.29
2608 4363 6.481976 TGTTTCTCTCAAACGACACAACATAT 59.518 34.615 0.00 0.00 33.05 1.78
2609 4364 6.466308 TTCTCTCAAACGACACAACATATG 57.534 37.500 0.00 0.00 0.00 1.78
2610 4365 5.778862 TCTCTCAAACGACACAACATATGA 58.221 37.500 10.38 0.00 0.00 2.15
2611 4366 6.220201 TCTCTCAAACGACACAACATATGAA 58.780 36.000 10.38 0.00 0.00 2.57
2612 4367 6.145534 TCTCTCAAACGACACAACATATGAAC 59.854 38.462 10.38 0.00 0.00 3.18
2613 4368 5.989168 TCTCAAACGACACAACATATGAACT 59.011 36.000 10.38 0.00 0.00 3.01
2614 4369 6.481976 TCTCAAACGACACAACATATGAACTT 59.518 34.615 10.38 0.00 0.00 2.66
2615 4370 6.655062 TCAAACGACACAACATATGAACTTC 58.345 36.000 10.38 0.00 0.00 3.01
2616 4371 6.258947 TCAAACGACACAACATATGAACTTCA 59.741 34.615 10.38 0.00 0.00 3.02
2617 4372 6.612247 AACGACACAACATATGAACTTCAA 57.388 33.333 10.38 0.00 0.00 2.69
2618 4373 6.612247 ACGACACAACATATGAACTTCAAA 57.388 33.333 10.38 0.00 0.00 2.69
2619 4374 7.202016 ACGACACAACATATGAACTTCAAAT 57.798 32.000 10.38 0.00 0.00 2.32
2620 4375 7.648142 ACGACACAACATATGAACTTCAAATT 58.352 30.769 10.38 0.00 0.00 1.82
2621 4376 8.134895 ACGACACAACATATGAACTTCAAATTT 58.865 29.630 10.38 0.00 0.00 1.82
2622 4377 8.967218 CGACACAACATATGAACTTCAAATTTT 58.033 29.630 10.38 0.00 0.00 1.82
2624 4379 8.550376 ACACAACATATGAACTTCAAATTTTGC 58.450 29.630 10.38 0.00 0.00 3.68
2625 4380 8.549548 CACAACATATGAACTTCAAATTTTGCA 58.450 29.630 10.38 0.00 0.00 4.08
2626 4381 8.767085 ACAACATATGAACTTCAAATTTTGCAG 58.233 29.630 10.38 7.16 0.00 4.41
2627 4382 8.980610 CAACATATGAACTTCAAATTTTGCAGA 58.019 29.630 14.44 0.67 0.00 4.26
2628 4383 9.545105 AACATATGAACTTCAAATTTTGCAGAA 57.455 25.926 14.44 0.00 0.00 3.02
2629 4384 8.981647 ACATATGAACTTCAAATTTTGCAGAAC 58.018 29.630 14.44 8.63 0.00 3.01
2630 4385 8.980610 CATATGAACTTCAAATTTTGCAGAACA 58.019 29.630 14.44 12.81 0.00 3.18
2631 4386 7.846644 ATGAACTTCAAATTTTGCAGAACAA 57.153 28.000 14.44 0.00 36.13 2.83
2632 4387 7.846644 TGAACTTCAAATTTTGCAGAACAAT 57.153 28.000 14.44 0.00 38.31 2.71
2633 4388 8.939201 TGAACTTCAAATTTTGCAGAACAATA 57.061 26.923 14.44 0.00 38.31 1.90
2634 4389 9.376075 TGAACTTCAAATTTTGCAGAACAATAA 57.624 25.926 14.44 0.00 38.31 1.40
2790 4545 9.814899 TTTTTCACACATTGATGTTCTAATGTT 57.185 25.926 0.00 0.00 43.00 2.71
2791 4546 9.814899 TTTTCACACATTGATGTTCTAATGTTT 57.185 25.926 0.00 0.00 43.00 2.83
2792 4547 8.800231 TTCACACATTGATGTTCTAATGTTTG 57.200 30.769 8.96 8.96 43.00 2.93
2793 4548 7.939782 TCACACATTGATGTTCTAATGTTTGT 58.060 30.769 12.91 3.13 43.00 2.83
2794 4549 8.412456 TCACACATTGATGTTCTAATGTTTGTT 58.588 29.630 12.91 0.00 43.00 2.83
2795 4550 8.693504 CACACATTGATGTTCTAATGTTTGTTC 58.306 33.333 0.00 0.00 43.00 3.18
2796 4551 7.591057 ACACATTGATGTTCTAATGTTTGTTCG 59.409 33.333 0.00 0.00 43.00 3.95
2797 4552 7.802720 CACATTGATGTTCTAATGTTTGTTCGA 59.197 33.333 0.00 0.00 43.00 3.71
2798 4553 8.514594 ACATTGATGTTCTAATGTTTGTTCGAT 58.485 29.630 0.00 0.00 43.00 3.59
2799 4554 9.003112 CATTGATGTTCTAATGTTTGTTCGATC 57.997 33.333 0.00 0.00 31.36 3.69
2800 4555 7.905604 TGATGTTCTAATGTTTGTTCGATCT 57.094 32.000 0.00 0.00 0.00 2.75
2801 4556 7.742151 TGATGTTCTAATGTTTGTTCGATCTG 58.258 34.615 0.00 0.00 0.00 2.90
2802 4557 5.927030 TGTTCTAATGTTTGTTCGATCTGC 58.073 37.500 0.00 0.00 0.00 4.26
2803 4558 5.468409 TGTTCTAATGTTTGTTCGATCTGCA 59.532 36.000 0.00 0.00 0.00 4.41
2804 4559 6.017523 TGTTCTAATGTTTGTTCGATCTGCAA 60.018 34.615 0.00 0.00 0.00 4.08
2805 4560 6.552859 TCTAATGTTTGTTCGATCTGCAAA 57.447 33.333 0.00 0.00 0.00 3.68
2806 4561 6.602179 TCTAATGTTTGTTCGATCTGCAAAG 58.398 36.000 6.49 0.00 33.50 2.77
2807 4562 4.836125 ATGTTTGTTCGATCTGCAAAGT 57.164 36.364 6.49 0.00 33.50 2.66
2808 4563 4.630894 TGTTTGTTCGATCTGCAAAGTT 57.369 36.364 6.49 0.00 33.50 2.66
2809 4564 4.992688 TGTTTGTTCGATCTGCAAAGTTT 58.007 34.783 6.49 0.00 33.50 2.66
2810 4565 4.797868 TGTTTGTTCGATCTGCAAAGTTTG 59.202 37.500 11.41 11.41 33.50 2.93
2811 4566 4.891627 TTGTTCGATCTGCAAAGTTTGA 57.108 36.364 19.82 3.95 0.00 2.69
2812 4567 4.891627 TGTTCGATCTGCAAAGTTTGAA 57.108 36.364 19.82 8.06 0.00 2.69
2813 4568 4.847633 TGTTCGATCTGCAAAGTTTGAAG 58.152 39.130 19.82 18.11 37.69 3.02
2814 4569 4.335315 TGTTCGATCTGCAAAGTTTGAAGT 59.665 37.500 20.86 10.18 37.59 3.01
2815 4570 5.163663 TGTTCGATCTGCAAAGTTTGAAGTT 60.164 36.000 20.86 14.10 37.59 2.66
2816 4571 5.095691 TCGATCTGCAAAGTTTGAAGTTC 57.904 39.130 20.86 19.87 37.59 3.01
2817 4572 4.574421 TCGATCTGCAAAGTTTGAAGTTCA 59.426 37.500 24.83 14.47 37.59 3.18
2818 4573 5.239306 TCGATCTGCAAAGTTTGAAGTTCAT 59.761 36.000 24.83 13.29 37.59 2.57
2819 4574 6.426633 TCGATCTGCAAAGTTTGAAGTTCATA 59.573 34.615 24.83 14.70 37.59 2.15
2820 4575 7.119699 TCGATCTGCAAAGTTTGAAGTTCATAT 59.880 33.333 24.83 12.71 37.59 1.78
2821 4576 7.217636 CGATCTGCAAAGTTTGAAGTTCATATG 59.782 37.037 24.83 11.62 37.59 1.78
2822 4577 7.275888 TCTGCAAAGTTTGAAGTTCATATGT 57.724 32.000 20.86 0.00 37.59 2.29
2823 4578 7.715657 TCTGCAAAGTTTGAAGTTCATATGTT 58.284 30.769 20.86 0.00 37.59 2.71
2824 4579 7.648908 TCTGCAAAGTTTGAAGTTCATATGTTG 59.351 33.333 20.86 10.86 37.59 3.33
2825 4580 7.264221 TGCAAAGTTTGAAGTTCATATGTTGT 58.736 30.769 19.82 0.00 0.00 3.32
2826 4581 7.763528 TGCAAAGTTTGAAGTTCATATGTTGTT 59.236 29.630 19.82 0.00 0.00 2.83
2827 4582 8.603181 GCAAAGTTTGAAGTTCATATGTTGTTT 58.397 29.630 19.82 0.00 0.00 2.83
2829 4584 9.868277 AAAGTTTGAAGTTCATATGTTGTTTCA 57.132 25.926 6.36 6.60 0.00 2.69
2835 4590 9.179552 TGAAGTTCATATGTTGTTTCATTTTCG 57.820 29.630 0.08 0.00 0.00 3.46
2836 4591 9.393249 GAAGTTCATATGTTGTTTCATTTTCGA 57.607 29.630 1.90 0.00 0.00 3.71
2837 4592 8.955061 AGTTCATATGTTGTTTCATTTTCGAG 57.045 30.769 1.90 0.00 0.00 4.04
2838 4593 8.783093 AGTTCATATGTTGTTTCATTTTCGAGA 58.217 29.630 1.90 0.00 0.00 4.04
2839 4594 9.393249 GTTCATATGTTGTTTCATTTTCGAGAA 57.607 29.630 1.90 0.00 0.00 2.87
2840 4595 9.958234 TTCATATGTTGTTTCATTTTCGAGAAA 57.042 25.926 1.90 0.00 0.00 2.52
2873 4628 9.614792 AGAGAAATCTTGTTGTTGTTAGTTAGT 57.385 29.630 0.00 0.00 0.00 2.24
2876 4631 9.233232 GAAATCTTGTTGTTGTTAGTTAGTTGG 57.767 33.333 0.00 0.00 0.00 3.77
2877 4632 8.514330 AATCTTGTTGTTGTTAGTTAGTTGGA 57.486 30.769 0.00 0.00 0.00 3.53
2878 4633 7.548196 TCTTGTTGTTGTTAGTTAGTTGGAG 57.452 36.000 0.00 0.00 0.00 3.86
2879 4634 7.332557 TCTTGTTGTTGTTAGTTAGTTGGAGA 58.667 34.615 0.00 0.00 0.00 3.71
2880 4635 7.494625 TCTTGTTGTTGTTAGTTAGTTGGAGAG 59.505 37.037 0.00 0.00 0.00 3.20
2881 4636 6.646267 TGTTGTTGTTAGTTAGTTGGAGAGT 58.354 36.000 0.00 0.00 0.00 3.24
2882 4637 7.784037 TGTTGTTGTTAGTTAGTTGGAGAGTA 58.216 34.615 0.00 0.00 0.00 2.59
2883 4638 7.707893 TGTTGTTGTTAGTTAGTTGGAGAGTAC 59.292 37.037 0.00 0.00 0.00 2.73
2884 4639 6.441274 TGTTGTTAGTTAGTTGGAGAGTACG 58.559 40.000 0.00 0.00 0.00 3.67
2885 4640 5.633830 TGTTAGTTAGTTGGAGAGTACGG 57.366 43.478 0.00 0.00 0.00 4.02
2886 4641 5.316167 TGTTAGTTAGTTGGAGAGTACGGA 58.684 41.667 0.00 0.00 0.00 4.69
2887 4642 5.948162 TGTTAGTTAGTTGGAGAGTACGGAT 59.052 40.000 0.00 0.00 0.00 4.18
2888 4643 6.094603 TGTTAGTTAGTTGGAGAGTACGGATC 59.905 42.308 0.00 0.00 0.00 3.36
2889 4644 4.857679 AGTTAGTTGGAGAGTACGGATCT 58.142 43.478 0.00 0.00 0.00 2.75
2890 4645 4.883006 AGTTAGTTGGAGAGTACGGATCTC 59.117 45.833 2.70 2.70 42.08 2.75
2891 4646 3.367646 AGTTGGAGAGTACGGATCTCA 57.632 47.619 11.48 0.00 44.16 3.27
2892 4647 3.698289 AGTTGGAGAGTACGGATCTCAA 58.302 45.455 11.48 0.00 44.16 3.02
2893 4648 4.087182 AGTTGGAGAGTACGGATCTCAAA 58.913 43.478 11.48 5.01 44.16 2.69
2894 4649 4.158764 AGTTGGAGAGTACGGATCTCAAAG 59.841 45.833 11.48 0.00 44.16 2.77
2895 4650 2.427453 TGGAGAGTACGGATCTCAAAGC 59.573 50.000 11.48 0.00 44.16 3.51
2896 4651 2.427453 GGAGAGTACGGATCTCAAAGCA 59.573 50.000 11.48 0.00 44.16 3.91
2897 4652 3.119101 GGAGAGTACGGATCTCAAAGCAA 60.119 47.826 11.48 0.00 44.16 3.91
2898 4653 4.109050 GAGAGTACGGATCTCAAAGCAAG 58.891 47.826 5.89 0.00 42.32 4.01
2899 4654 3.118956 AGAGTACGGATCTCAAAGCAAGG 60.119 47.826 0.00 0.00 34.73 3.61
2900 4655 1.666189 GTACGGATCTCAAAGCAAGGC 59.334 52.381 0.00 0.00 0.00 4.35
2901 4656 0.326264 ACGGATCTCAAAGCAAGGCT 59.674 50.000 0.00 0.00 42.56 4.58
2902 4657 0.731417 CGGATCTCAAAGCAAGGCTG 59.269 55.000 0.00 0.00 39.62 4.85
2903 4658 1.101331 GGATCTCAAAGCAAGGCTGG 58.899 55.000 0.00 0.00 39.62 4.85
2904 4659 1.340405 GGATCTCAAAGCAAGGCTGGA 60.340 52.381 0.00 0.00 39.62 3.86
2905 4660 2.015587 GATCTCAAAGCAAGGCTGGAG 58.984 52.381 11.70 11.70 39.62 3.86
2906 4661 0.037303 TCTCAAAGCAAGGCTGGAGG 59.963 55.000 15.67 3.44 39.62 4.30
2907 4662 0.964358 CTCAAAGCAAGGCTGGAGGG 60.964 60.000 0.00 0.00 39.62 4.30
2908 4663 1.228675 CAAAGCAAGGCTGGAGGGT 60.229 57.895 0.00 0.00 39.62 4.34
2909 4664 0.829182 CAAAGCAAGGCTGGAGGGTT 60.829 55.000 0.00 0.00 39.62 4.11
2910 4665 0.829182 AAAGCAAGGCTGGAGGGTTG 60.829 55.000 0.00 0.00 39.62 3.77
2911 4666 1.719063 AAGCAAGGCTGGAGGGTTGA 61.719 55.000 0.00 0.00 39.62 3.18
2912 4667 1.676967 GCAAGGCTGGAGGGTTGAG 60.677 63.158 0.00 0.00 0.00 3.02
2913 4668 1.001641 CAAGGCTGGAGGGTTGAGG 60.002 63.158 0.00 0.00 0.00 3.86
2914 4669 1.151810 AAGGCTGGAGGGTTGAGGA 60.152 57.895 0.00 0.00 0.00 3.71
2915 4670 0.551131 AAGGCTGGAGGGTTGAGGAT 60.551 55.000 0.00 0.00 0.00 3.24
2916 4671 0.343372 AGGCTGGAGGGTTGAGGATA 59.657 55.000 0.00 0.00 0.00 2.59
2917 4672 1.213296 GGCTGGAGGGTTGAGGATAA 58.787 55.000 0.00 0.00 0.00 1.75
2918 4673 1.141858 GGCTGGAGGGTTGAGGATAAG 59.858 57.143 0.00 0.00 0.00 1.73
2919 4674 2.119495 GCTGGAGGGTTGAGGATAAGA 58.881 52.381 0.00 0.00 0.00 2.10
2920 4675 2.103941 GCTGGAGGGTTGAGGATAAGAG 59.896 54.545 0.00 0.00 0.00 2.85
2921 4676 2.703007 CTGGAGGGTTGAGGATAAGAGG 59.297 54.545 0.00 0.00 0.00 3.69
2922 4677 2.045885 TGGAGGGTTGAGGATAAGAGGT 59.954 50.000 0.00 0.00 0.00 3.85
2923 4678 3.116174 GGAGGGTTGAGGATAAGAGGTT 58.884 50.000 0.00 0.00 0.00 3.50
2924 4679 3.134985 GGAGGGTTGAGGATAAGAGGTTC 59.865 52.174 0.00 0.00 0.00 3.62
2925 4680 4.034410 GAGGGTTGAGGATAAGAGGTTCT 58.966 47.826 0.00 0.00 0.00 3.01
2926 4681 5.209659 GAGGGTTGAGGATAAGAGGTTCTA 58.790 45.833 0.00 0.00 0.00 2.10
2927 4682 5.793967 AGGGTTGAGGATAAGAGGTTCTAT 58.206 41.667 0.00 0.00 0.00 1.98
2928 4683 5.604650 AGGGTTGAGGATAAGAGGTTCTATG 59.395 44.000 0.00 0.00 0.00 2.23
2929 4684 5.367060 GGGTTGAGGATAAGAGGTTCTATGT 59.633 44.000 0.00 0.00 0.00 2.29
2930 4685 6.553852 GGGTTGAGGATAAGAGGTTCTATGTA 59.446 42.308 0.00 0.00 0.00 2.29
2931 4686 7.256012 GGGTTGAGGATAAGAGGTTCTATGTAG 60.256 44.444 0.00 0.00 0.00 2.74
2932 4687 6.902771 TGAGGATAAGAGGTTCTATGTAGC 57.097 41.667 0.00 0.00 0.00 3.58
2933 4688 5.775701 TGAGGATAAGAGGTTCTATGTAGCC 59.224 44.000 0.00 0.00 0.00 3.93
2934 4689 5.971493 AGGATAAGAGGTTCTATGTAGCCT 58.029 41.667 0.00 0.00 0.00 4.58
2935 4690 5.777732 AGGATAAGAGGTTCTATGTAGCCTG 59.222 44.000 0.00 0.00 0.00 4.85
2936 4691 5.775701 GGATAAGAGGTTCTATGTAGCCTGA 59.224 44.000 0.00 0.00 0.00 3.86
2937 4692 6.071616 GGATAAGAGGTTCTATGTAGCCTGAG 60.072 46.154 0.00 0.00 0.00 3.35
2938 4693 2.962421 AGAGGTTCTATGTAGCCTGAGC 59.038 50.000 0.00 0.00 40.32 4.26
2950 4705 2.481289 GCCTGAGCTACAAAGGAACT 57.519 50.000 8.11 0.00 36.38 3.01
2951 4706 2.784347 GCCTGAGCTACAAAGGAACTT 58.216 47.619 8.11 0.00 44.29 2.66
3033 4789 1.640670 ACATCTTGGCCACACCCTTAT 59.359 47.619 3.88 0.00 37.83 1.73
3051 4807 6.058183 CCCTTATTCCTATTTGTCTGACTGG 58.942 44.000 9.51 4.14 0.00 4.00
3086 4842 5.705441 TGAATTCAGCTCGTAAACCTTTCAT 59.295 36.000 3.38 0.00 0.00 2.57
3099 4855 3.482436 ACCTTTCATCGTGTTTTAGGCA 58.518 40.909 0.00 0.00 0.00 4.75
3138 4894 2.396590 TTGGTTCGCTTCCCATACTC 57.603 50.000 0.00 0.00 0.00 2.59
3169 4925 2.363788 TGAGTGTGCCATCTACGTTC 57.636 50.000 0.00 0.00 0.00 3.95
3191 4947 4.461992 GTTTTCACGATTTCTCCGTCAA 57.538 40.909 0.00 0.00 38.29 3.18
3196 4952 5.277601 TCACGATTTCTCCGTCAAAATTC 57.722 39.130 0.00 0.00 38.29 2.17
3198 4954 3.091417 CGATTTCTCCGTCAAAATTCGC 58.909 45.455 0.00 0.00 0.00 4.70
3277 5041 1.243902 TTTTGCCGAATCAGACACCC 58.756 50.000 0.00 0.00 0.00 4.61
3286 5050 0.891373 ATCAGACACCCGAGTCACTG 59.109 55.000 0.00 0.00 40.98 3.66
3292 5056 1.606889 ACCCGAGTCACTGTCCTCC 60.607 63.158 0.00 0.00 0.00 4.30
3318 5083 5.096954 TGACATGTACGAAATTTGCGAAA 57.903 34.783 3.21 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
379 396 0.818296 ACGGTAGCACTCAGGATGAC 59.182 55.000 0.00 0.00 42.56 3.06
383 400 0.037734 TCAGACGGTAGCACTCAGGA 59.962 55.000 0.00 0.00 0.00 3.86
391 408 3.031660 CCGAAGTTCAGACGGTAGC 57.968 57.895 3.32 0.00 41.47 3.58
445 464 4.212847 CGGAGAAATAGTGAGAATGCATGG 59.787 45.833 0.00 0.00 0.00 3.66
446 465 4.813161 ACGGAGAAATAGTGAGAATGCATG 59.187 41.667 0.00 0.00 0.00 4.06
448 467 4.160439 AGACGGAGAAATAGTGAGAATGCA 59.840 41.667 0.00 0.00 0.00 3.96
449 468 4.505922 CAGACGGAGAAATAGTGAGAATGC 59.494 45.833 0.00 0.00 0.00 3.56
467 486 7.507672 AAGAAAAATACATACGACTCAGACG 57.492 36.000 0.00 0.00 0.00 4.18
481 500 6.861055 TGTCTGATTCGGCAAAAGAAAAATAC 59.139 34.615 0.00 0.00 0.00 1.89
517 539 4.122046 CACATGCCAAATAGAGACATCGA 58.878 43.478 0.00 0.00 0.00 3.59
518 540 3.303593 GCACATGCCAAATAGAGACATCG 60.304 47.826 0.00 0.00 34.31 3.84
522 544 1.331756 CCGCACATGCCAAATAGAGAC 59.668 52.381 0.00 0.00 37.91 3.36
539 563 0.098200 GTCGGTTAGGCAAATTCCGC 59.902 55.000 0.00 0.00 40.81 5.54
570 594 6.330278 TGTAGAATAGTGTTGGAATCTGACG 58.670 40.000 0.00 0.00 0.00 4.35
612 637 4.274459 GTCCGTATATTGGACGTCTGTAGT 59.726 45.833 16.46 2.20 45.82 2.73
631 656 1.605058 CCCTGTCTACCTGTGGTCCG 61.605 65.000 0.00 0.00 37.09 4.79
651 681 0.727398 GTTCTAGTTGCGGCATCACC 59.273 55.000 13.08 0.00 0.00 4.02
652 682 1.394917 CTGTTCTAGTTGCGGCATCAC 59.605 52.381 13.08 5.31 0.00 3.06
818 856 2.027003 TTAATTAGACAACGGGCCGG 57.973 50.000 31.78 16.15 0.00 6.13
819 857 4.624015 TCTATTAATTAGACAACGGGCCG 58.376 43.478 27.06 27.06 31.79 6.13
820 858 5.818857 TGTTCTATTAATTAGACAACGGGCC 59.181 40.000 0.00 0.00 36.65 5.80
821 859 6.913873 TGTTCTATTAATTAGACAACGGGC 57.086 37.500 0.00 0.00 36.65 6.13
1003 2638 5.069516 CCTTTGGTAATGAATGGATTGGAGG 59.930 44.000 0.00 0.00 0.00 4.30
1036 2671 1.373246 GCGCCATTTTTGCTGAGCA 60.373 52.632 1.40 1.40 36.47 4.26
1162 2797 1.622811 GATGGTGTTGGGGATTTGCAA 59.377 47.619 0.00 0.00 0.00 4.08
1182 2817 0.695924 TAGACCCACCATGGTGTTGG 59.304 55.000 36.62 32.50 44.02 3.77
1307 2942 2.743928 CTGGCGAGGCTGGTTCAC 60.744 66.667 0.00 0.00 0.00 3.18
1538 3283 7.882791 TGAGAAAGTTGCTATCAGAAACCATTA 59.117 33.333 0.00 0.00 34.15 1.90
1641 3386 1.031571 TAATTGCCTTGGCAGCTCCG 61.032 55.000 14.33 0.00 37.80 4.63
1750 3495 2.354510 TGTGCTTAAACATATCGCCAGC 59.645 45.455 0.00 0.00 0.00 4.85
1824 3569 2.638363 GTGTTCCTACTTCCAAGGGAGT 59.362 50.000 5.21 5.21 34.66 3.85
1908 3655 8.500773 GCATAAGCGGCTAAATAGTAAATACAA 58.499 33.333 1.35 0.00 0.00 2.41
1973 3720 6.071616 GCTGGAATTGTAGGGTTTTGTCATAA 60.072 38.462 0.00 0.00 0.00 1.90
2004 3753 3.496884 CGAATATGTTACCATTGGTCCCG 59.503 47.826 12.68 2.22 37.09 5.14
2163 3918 1.856629 ACATTCTCATTTGGCCCAGG 58.143 50.000 0.00 0.00 0.00 4.45
2278 4033 5.606348 AATTTTGTAGTTGCTGAACCCAA 57.394 34.783 0.00 0.00 31.81 4.12
2488 4243 2.092103 AGCTACAGAAAACCACACCCAA 60.092 45.455 0.00 0.00 0.00 4.12
2489 4244 1.493022 AGCTACAGAAAACCACACCCA 59.507 47.619 0.00 0.00 0.00 4.51
2490 4245 2.152016 GAGCTACAGAAAACCACACCC 58.848 52.381 0.00 0.00 0.00 4.61
2491 4246 2.846193 TGAGCTACAGAAAACCACACC 58.154 47.619 0.00 0.00 0.00 4.16
2507 4262 1.141234 GGTACCGTGTAGCCTGAGC 59.859 63.158 0.00 0.00 40.32 4.26
2508 4263 1.814527 GGGTACCGTGTAGCCTGAG 59.185 63.158 19.05 0.00 40.86 3.35
2509 4264 4.023137 GGGTACCGTGTAGCCTGA 57.977 61.111 19.05 0.00 40.86 3.86
2521 4276 3.117663 TGGATGGCAAAGATAAGGGGTAC 60.118 47.826 0.00 0.00 0.00 3.34
2522 4277 3.127250 TGGATGGCAAAGATAAGGGGTA 58.873 45.455 0.00 0.00 0.00 3.69
2523 4278 1.929494 TGGATGGCAAAGATAAGGGGT 59.071 47.619 0.00 0.00 0.00 4.95
2524 4279 2.754012 TGGATGGCAAAGATAAGGGG 57.246 50.000 0.00 0.00 0.00 4.79
2525 4280 4.109877 AGATGGATGGCAAAGATAAGGG 57.890 45.455 0.00 0.00 0.00 3.95
2526 4281 5.125097 GCATAGATGGATGGCAAAGATAAGG 59.875 44.000 0.00 0.00 0.00 2.69
2527 4282 5.708697 TGCATAGATGGATGGCAAAGATAAG 59.291 40.000 0.00 0.00 0.00 1.73
2528 4283 5.633117 TGCATAGATGGATGGCAAAGATAA 58.367 37.500 0.00 0.00 0.00 1.75
2529 4284 5.245584 TGCATAGATGGATGGCAAAGATA 57.754 39.130 0.00 0.00 0.00 1.98
2530 4285 4.108501 TGCATAGATGGATGGCAAAGAT 57.891 40.909 0.00 0.00 0.00 2.40
2531 4286 3.581265 TGCATAGATGGATGGCAAAGA 57.419 42.857 0.00 0.00 0.00 2.52
2532 4287 3.824443 TGATGCATAGATGGATGGCAAAG 59.176 43.478 0.00 0.00 39.04 2.77
2533 4288 3.834938 TGATGCATAGATGGATGGCAAA 58.165 40.909 0.00 0.00 39.04 3.68
2534 4289 3.512219 TGATGCATAGATGGATGGCAA 57.488 42.857 0.00 0.00 39.04 4.52
2535 4290 3.073356 TCTTGATGCATAGATGGATGGCA 59.927 43.478 0.00 0.00 39.04 4.92
2536 4291 3.682696 TCTTGATGCATAGATGGATGGC 58.317 45.455 0.00 0.00 39.04 4.40
2537 4292 4.882427 GGATCTTGATGCATAGATGGATGG 59.118 45.833 15.24 0.00 39.04 3.51
2538 4293 4.571176 CGGATCTTGATGCATAGATGGATG 59.429 45.833 15.24 1.18 39.04 3.51
2539 4294 4.224594 ACGGATCTTGATGCATAGATGGAT 59.775 41.667 15.24 7.93 41.76 3.41
2540 4295 3.580022 ACGGATCTTGATGCATAGATGGA 59.420 43.478 15.24 3.78 31.46 3.41
2541 4296 3.683340 CACGGATCTTGATGCATAGATGG 59.317 47.826 15.24 9.96 31.46 3.51
2542 4297 3.124806 GCACGGATCTTGATGCATAGATG 59.875 47.826 15.24 6.11 38.00 2.90
2543 4298 3.244318 TGCACGGATCTTGATGCATAGAT 60.244 43.478 11.06 11.06 42.92 1.98
2544 4299 2.102925 TGCACGGATCTTGATGCATAGA 59.897 45.455 0.00 0.00 42.92 1.98
2545 4300 2.486918 TGCACGGATCTTGATGCATAG 58.513 47.619 0.00 0.00 42.92 2.23
2546 4301 2.618442 TGCACGGATCTTGATGCATA 57.382 45.000 0.00 0.00 42.92 3.14
2547 4302 1.753930 TTGCACGGATCTTGATGCAT 58.246 45.000 0.00 0.00 46.75 3.96
2548 4303 1.199789 GTTTGCACGGATCTTGATGCA 59.800 47.619 8.86 8.86 45.94 3.96
2549 4304 1.199789 TGTTTGCACGGATCTTGATGC 59.800 47.619 0.00 0.00 38.59 3.91
2550 4305 2.855180 GTGTTTGCACGGATCTTGATG 58.145 47.619 0.00 0.00 35.75 3.07
2551 4306 8.399304 ACAAATGTGTTTGCACGGATCTTGAT 62.399 38.462 0.00 0.00 46.84 2.57
2552 4307 7.172943 ACAAATGTGTTTGCACGGATCTTGA 62.173 40.000 0.00 0.00 46.84 3.02
2553 4308 5.028291 ACAAATGTGTTTGCACGGATCTTG 61.028 41.667 0.00 0.00 46.84 3.02
2554 4309 3.068024 ACAAATGTGTTTGCACGGATCTT 59.932 39.130 0.00 0.00 46.84 2.40
2555 4310 2.622942 ACAAATGTGTTTGCACGGATCT 59.377 40.909 0.00 0.00 46.84 2.75
2556 4311 2.979813 GACAAATGTGTTTGCACGGATC 59.020 45.455 0.00 0.00 46.84 3.36
2557 4312 2.622942 AGACAAATGTGTTTGCACGGAT 59.377 40.909 0.00 0.00 46.84 4.18
2558 4313 2.020720 AGACAAATGTGTTTGCACGGA 58.979 42.857 0.00 0.00 46.84 4.69
2559 4314 2.490328 AGACAAATGTGTTTGCACGG 57.510 45.000 0.00 0.00 46.84 4.94
2560 4315 4.838665 AAAAGACAAATGTGTTTGCACG 57.161 36.364 9.13 0.00 46.84 5.34
2579 4334 6.003234 TGTGTCGTTTGAGAGAAACAAAAA 57.997 33.333 0.00 0.00 38.63 1.94
2580 4335 5.614923 TGTGTCGTTTGAGAGAAACAAAA 57.385 34.783 0.00 0.00 38.63 2.44
2581 4336 5.049336 TGTTGTGTCGTTTGAGAGAAACAAA 60.049 36.000 3.15 0.00 43.64 2.83
2582 4337 4.452795 TGTTGTGTCGTTTGAGAGAAACAA 59.547 37.500 0.00 0.00 40.94 2.83
2583 4338 3.997681 TGTTGTGTCGTTTGAGAGAAACA 59.002 39.130 0.00 0.00 33.19 2.83
2584 4339 4.593597 TGTTGTGTCGTTTGAGAGAAAC 57.406 40.909 0.00 0.00 0.00 2.78
2585 4340 6.704050 TCATATGTTGTGTCGTTTGAGAGAAA 59.296 34.615 1.90 0.00 0.00 2.52
2586 4341 6.220201 TCATATGTTGTGTCGTTTGAGAGAA 58.780 36.000 1.90 0.00 0.00 2.87
2587 4342 5.778862 TCATATGTTGTGTCGTTTGAGAGA 58.221 37.500 1.90 0.00 0.00 3.10
2588 4343 6.146184 AGTTCATATGTTGTGTCGTTTGAGAG 59.854 38.462 1.90 0.00 0.00 3.20
2589 4344 5.989168 AGTTCATATGTTGTGTCGTTTGAGA 59.011 36.000 1.90 0.00 0.00 3.27
2590 4345 6.228273 AGTTCATATGTTGTGTCGTTTGAG 57.772 37.500 1.90 0.00 0.00 3.02
2591 4346 6.258947 TGAAGTTCATATGTTGTGTCGTTTGA 59.741 34.615 0.08 0.00 0.00 2.69
2592 4347 6.426327 TGAAGTTCATATGTTGTGTCGTTTG 58.574 36.000 0.08 0.00 0.00 2.93
2593 4348 6.612247 TGAAGTTCATATGTTGTGTCGTTT 57.388 33.333 0.08 0.00 0.00 3.60
2594 4349 6.612247 TTGAAGTTCATATGTTGTGTCGTT 57.388 33.333 6.36 0.00 0.00 3.85
2595 4350 6.612247 TTTGAAGTTCATATGTTGTGTCGT 57.388 33.333 6.36 0.00 0.00 4.34
2596 4351 8.506140 AAATTTGAAGTTCATATGTTGTGTCG 57.494 30.769 6.36 0.00 0.00 4.35
2598 4353 8.550376 GCAAAATTTGAAGTTCATATGTTGTGT 58.450 29.630 26.67 5.88 36.24 3.72
2599 4354 8.549548 TGCAAAATTTGAAGTTCATATGTTGTG 58.450 29.630 26.67 16.78 36.24 3.33
2600 4355 8.659925 TGCAAAATTTGAAGTTCATATGTTGT 57.340 26.923 26.67 6.70 36.24 3.32
2601 4356 8.980610 TCTGCAAAATTTGAAGTTCATATGTTG 58.019 29.630 24.18 24.18 36.64 3.33
2602 4357 9.545105 TTCTGCAAAATTTGAAGTTCATATGTT 57.455 25.926 13.03 6.17 37.59 2.71
2603 4358 8.981647 GTTCTGCAAAATTTGAAGTTCATATGT 58.018 29.630 13.03 0.00 37.59 2.29
2604 4359 8.980610 TGTTCTGCAAAATTTGAAGTTCATATG 58.019 29.630 13.03 0.00 37.59 1.78
2605 4360 9.545105 TTGTTCTGCAAAATTTGAAGTTCATAT 57.455 25.926 13.03 4.61 37.59 1.78
2606 4361 8.939201 TTGTTCTGCAAAATTTGAAGTTCATA 57.061 26.923 13.03 1.98 37.59 2.15
2607 4362 7.846644 TTGTTCTGCAAAATTTGAAGTTCAT 57.153 28.000 13.03 0.00 37.59 2.57
2608 4363 7.846644 ATTGTTCTGCAAAATTTGAAGTTCA 57.153 28.000 13.03 10.44 40.91 3.18
2764 4519 9.814899 AACATTAGAACATCAATGTGTGAAAAA 57.185 25.926 0.00 0.00 42.93 1.94
2765 4520 9.814899 AAACATTAGAACATCAATGTGTGAAAA 57.185 25.926 0.00 0.00 42.93 2.29
2766 4521 9.247126 CAAACATTAGAACATCAATGTGTGAAA 57.753 29.630 10.68 0.00 46.51 2.69
2767 4522 8.412456 ACAAACATTAGAACATCAATGTGTGAA 58.588 29.630 19.37 0.00 46.51 3.18
2768 4523 7.939782 ACAAACATTAGAACATCAATGTGTGA 58.060 30.769 19.37 0.00 46.51 3.58
2770 4525 7.591057 CGAACAAACATTAGAACATCAATGTGT 59.409 33.333 0.00 0.00 42.93 3.72
2771 4526 7.802720 TCGAACAAACATTAGAACATCAATGTG 59.197 33.333 0.00 0.00 42.93 3.21
2772 4527 7.870826 TCGAACAAACATTAGAACATCAATGT 58.129 30.769 0.00 0.00 45.03 2.71
2773 4528 8.900511 ATCGAACAAACATTAGAACATCAATG 57.099 30.769 0.00 0.00 37.99 2.82
2774 4529 8.950210 AGATCGAACAAACATTAGAACATCAAT 58.050 29.630 0.00 0.00 0.00 2.57
2775 4530 8.229811 CAGATCGAACAAACATTAGAACATCAA 58.770 33.333 0.00 0.00 0.00 2.57
2776 4531 7.624134 GCAGATCGAACAAACATTAGAACATCA 60.624 37.037 0.00 0.00 0.00 3.07
2777 4532 6.684555 GCAGATCGAACAAACATTAGAACATC 59.315 38.462 0.00 0.00 0.00 3.06
2778 4533 6.149308 TGCAGATCGAACAAACATTAGAACAT 59.851 34.615 0.00 0.00 0.00 2.71
2779 4534 5.468409 TGCAGATCGAACAAACATTAGAACA 59.532 36.000 0.00 0.00 0.00 3.18
2780 4535 5.927030 TGCAGATCGAACAAACATTAGAAC 58.073 37.500 0.00 0.00 0.00 3.01
2781 4536 6.552859 TTGCAGATCGAACAAACATTAGAA 57.447 33.333 0.00 0.00 0.00 2.10
2782 4537 6.204688 ACTTTGCAGATCGAACAAACATTAGA 59.795 34.615 6.71 0.00 0.00 2.10
2783 4538 6.373779 ACTTTGCAGATCGAACAAACATTAG 58.626 36.000 6.71 1.57 0.00 1.73
2784 4539 6.312399 ACTTTGCAGATCGAACAAACATTA 57.688 33.333 6.71 0.00 0.00 1.90
2785 4540 5.186996 ACTTTGCAGATCGAACAAACATT 57.813 34.783 6.71 0.00 0.00 2.71
2786 4541 4.836125 ACTTTGCAGATCGAACAAACAT 57.164 36.364 6.71 0.00 0.00 2.71
2787 4542 4.630894 AACTTTGCAGATCGAACAAACA 57.369 36.364 6.71 0.00 0.00 2.83
2788 4543 5.034152 TCAAACTTTGCAGATCGAACAAAC 58.966 37.500 6.71 0.00 0.00 2.93
2789 4544 5.242069 TCAAACTTTGCAGATCGAACAAA 57.758 34.783 9.48 9.48 0.00 2.83
2790 4545 4.891627 TCAAACTTTGCAGATCGAACAA 57.108 36.364 0.00 0.00 0.00 2.83
2791 4546 4.335315 ACTTCAAACTTTGCAGATCGAACA 59.665 37.500 8.00 0.00 0.00 3.18
2792 4547 4.848757 ACTTCAAACTTTGCAGATCGAAC 58.151 39.130 8.00 0.00 0.00 3.95
2793 4548 5.065859 TGAACTTCAAACTTTGCAGATCGAA 59.934 36.000 8.00 0.00 30.58 3.71
2794 4549 4.574421 TGAACTTCAAACTTTGCAGATCGA 59.426 37.500 8.00 0.00 30.58 3.59
2795 4550 4.847633 TGAACTTCAAACTTTGCAGATCG 58.152 39.130 8.00 0.00 30.58 3.69
2796 4551 8.025445 ACATATGAACTTCAAACTTTGCAGATC 58.975 33.333 10.38 6.38 0.00 2.75
2797 4552 7.889469 ACATATGAACTTCAAACTTTGCAGAT 58.111 30.769 10.38 0.00 0.00 2.90
2798 4553 7.275888 ACATATGAACTTCAAACTTTGCAGA 57.724 32.000 10.38 0.00 0.00 4.26
2799 4554 7.436080 ACAACATATGAACTTCAAACTTTGCAG 59.564 33.333 10.38 0.17 0.00 4.41
2800 4555 7.264221 ACAACATATGAACTTCAAACTTTGCA 58.736 30.769 10.38 0.00 0.00 4.08
2801 4556 7.698836 ACAACATATGAACTTCAAACTTTGC 57.301 32.000 10.38 0.00 0.00 3.68
2803 4558 9.868277 TGAAACAACATATGAACTTCAAACTTT 57.132 25.926 10.38 0.00 0.00 2.66
2809 4564 9.179552 CGAAAATGAAACAACATATGAACTTCA 57.820 29.630 10.38 12.07 33.50 3.02
2810 4565 9.393249 TCGAAAATGAAACAACATATGAACTTC 57.607 29.630 10.38 7.10 0.00 3.01
2811 4566 9.398170 CTCGAAAATGAAACAACATATGAACTT 57.602 29.630 10.38 0.00 0.00 2.66
2812 4567 8.783093 TCTCGAAAATGAAACAACATATGAACT 58.217 29.630 10.38 0.00 0.00 3.01
2813 4568 8.948853 TCTCGAAAATGAAACAACATATGAAC 57.051 30.769 10.38 0.00 0.00 3.18
2814 4569 9.958234 TTTCTCGAAAATGAAACAACATATGAA 57.042 25.926 10.38 0.00 0.00 2.57
2815 4570 9.393249 GTTTCTCGAAAATGAAACAACATATGA 57.607 29.630 18.08 0.00 46.45 2.15
2847 4602 9.614792 ACTAACTAACAACAACAAGATTTCTCT 57.385 29.630 0.00 0.00 0.00 3.10
2850 4605 9.233232 CCAACTAACTAACAACAACAAGATTTC 57.767 33.333 0.00 0.00 0.00 2.17
2851 4606 8.962679 TCCAACTAACTAACAACAACAAGATTT 58.037 29.630 0.00 0.00 0.00 2.17
2852 4607 8.514330 TCCAACTAACTAACAACAACAAGATT 57.486 30.769 0.00 0.00 0.00 2.40
2853 4608 7.990886 TCTCCAACTAACTAACAACAACAAGAT 59.009 33.333 0.00 0.00 0.00 2.40
2854 4609 7.332557 TCTCCAACTAACTAACAACAACAAGA 58.667 34.615 0.00 0.00 0.00 3.02
2855 4610 7.280205 ACTCTCCAACTAACTAACAACAACAAG 59.720 37.037 0.00 0.00 0.00 3.16
2856 4611 7.107542 ACTCTCCAACTAACTAACAACAACAA 58.892 34.615 0.00 0.00 0.00 2.83
2857 4612 6.646267 ACTCTCCAACTAACTAACAACAACA 58.354 36.000 0.00 0.00 0.00 3.33
2858 4613 7.096312 CGTACTCTCCAACTAACTAACAACAAC 60.096 40.741 0.00 0.00 0.00 3.32
2859 4614 6.919662 CGTACTCTCCAACTAACTAACAACAA 59.080 38.462 0.00 0.00 0.00 2.83
2860 4615 6.441274 CGTACTCTCCAACTAACTAACAACA 58.559 40.000 0.00 0.00 0.00 3.33
2861 4616 5.860716 CCGTACTCTCCAACTAACTAACAAC 59.139 44.000 0.00 0.00 0.00 3.32
2862 4617 5.769662 TCCGTACTCTCCAACTAACTAACAA 59.230 40.000 0.00 0.00 0.00 2.83
2863 4618 5.316167 TCCGTACTCTCCAACTAACTAACA 58.684 41.667 0.00 0.00 0.00 2.41
2864 4619 5.886960 TCCGTACTCTCCAACTAACTAAC 57.113 43.478 0.00 0.00 0.00 2.34
2865 4620 6.421485 AGATCCGTACTCTCCAACTAACTAA 58.579 40.000 0.00 0.00 0.00 2.24
2866 4621 5.999044 AGATCCGTACTCTCCAACTAACTA 58.001 41.667 0.00 0.00 0.00 2.24
2867 4622 4.857679 AGATCCGTACTCTCCAACTAACT 58.142 43.478 0.00 0.00 0.00 2.24
2868 4623 4.639310 TGAGATCCGTACTCTCCAACTAAC 59.361 45.833 7.85 0.00 38.70 2.34
2869 4624 4.851843 TGAGATCCGTACTCTCCAACTAA 58.148 43.478 7.85 0.00 38.70 2.24
2870 4625 4.498894 TGAGATCCGTACTCTCCAACTA 57.501 45.455 7.85 0.00 38.70 2.24
2871 4626 3.367646 TGAGATCCGTACTCTCCAACT 57.632 47.619 7.85 0.00 38.70 3.16
2872 4627 4.425520 CTTTGAGATCCGTACTCTCCAAC 58.574 47.826 7.85 0.00 38.70 3.77
2873 4628 3.119101 GCTTTGAGATCCGTACTCTCCAA 60.119 47.826 7.85 3.49 38.70 3.53
2874 4629 2.427453 GCTTTGAGATCCGTACTCTCCA 59.573 50.000 7.85 0.00 38.70 3.86
2875 4630 2.427453 TGCTTTGAGATCCGTACTCTCC 59.573 50.000 7.85 0.00 38.70 3.71
2876 4631 3.784701 TGCTTTGAGATCCGTACTCTC 57.215 47.619 4.13 4.13 39.69 3.20
2877 4632 3.118956 CCTTGCTTTGAGATCCGTACTCT 60.119 47.826 0.00 0.00 35.66 3.24
2878 4633 3.190874 CCTTGCTTTGAGATCCGTACTC 58.809 50.000 0.00 0.00 35.26 2.59
2879 4634 2.678190 GCCTTGCTTTGAGATCCGTACT 60.678 50.000 0.00 0.00 0.00 2.73
2880 4635 1.666189 GCCTTGCTTTGAGATCCGTAC 59.334 52.381 0.00 0.00 0.00 3.67
2881 4636 1.555075 AGCCTTGCTTTGAGATCCGTA 59.445 47.619 0.00 0.00 33.89 4.02
2882 4637 0.326264 AGCCTTGCTTTGAGATCCGT 59.674 50.000 0.00 0.00 33.89 4.69
2883 4638 0.731417 CAGCCTTGCTTTGAGATCCG 59.269 55.000 0.00 0.00 36.40 4.18
2884 4639 1.101331 CCAGCCTTGCTTTGAGATCC 58.899 55.000 0.00 0.00 36.40 3.36
2885 4640 2.015587 CTCCAGCCTTGCTTTGAGATC 58.984 52.381 6.56 0.00 37.23 2.75
2886 4641 1.340795 CCTCCAGCCTTGCTTTGAGAT 60.341 52.381 11.86 0.00 37.23 2.75
2887 4642 0.037303 CCTCCAGCCTTGCTTTGAGA 59.963 55.000 11.86 0.00 37.23 3.27
2888 4643 0.964358 CCCTCCAGCCTTGCTTTGAG 60.964 60.000 5.73 5.73 36.40 3.02
2889 4644 1.075482 CCCTCCAGCCTTGCTTTGA 59.925 57.895 0.00 0.00 36.40 2.69
2890 4645 0.829182 AACCCTCCAGCCTTGCTTTG 60.829 55.000 0.00 0.00 36.40 2.77
2891 4646 0.829182 CAACCCTCCAGCCTTGCTTT 60.829 55.000 0.00 0.00 36.40 3.51
2892 4647 1.228675 CAACCCTCCAGCCTTGCTT 60.229 57.895 0.00 0.00 36.40 3.91
2893 4648 2.134630 CTCAACCCTCCAGCCTTGCT 62.135 60.000 0.00 0.00 40.77 3.91
2894 4649 1.676967 CTCAACCCTCCAGCCTTGC 60.677 63.158 0.00 0.00 0.00 4.01
2895 4650 1.001641 CCTCAACCCTCCAGCCTTG 60.002 63.158 0.00 0.00 0.00 3.61
2896 4651 0.551131 ATCCTCAACCCTCCAGCCTT 60.551 55.000 0.00 0.00 0.00 4.35
2897 4652 0.343372 TATCCTCAACCCTCCAGCCT 59.657 55.000 0.00 0.00 0.00 4.58
2898 4653 1.141858 CTTATCCTCAACCCTCCAGCC 59.858 57.143 0.00 0.00 0.00 4.85
2899 4654 2.103941 CTCTTATCCTCAACCCTCCAGC 59.896 54.545 0.00 0.00 0.00 4.85
2900 4655 2.703007 CCTCTTATCCTCAACCCTCCAG 59.297 54.545 0.00 0.00 0.00 3.86
2901 4656 2.045885 ACCTCTTATCCTCAACCCTCCA 59.954 50.000 0.00 0.00 0.00 3.86
2902 4657 2.765502 ACCTCTTATCCTCAACCCTCC 58.234 52.381 0.00 0.00 0.00 4.30
2903 4658 4.034410 AGAACCTCTTATCCTCAACCCTC 58.966 47.826 0.00 0.00 0.00 4.30
2904 4659 4.081695 AGAACCTCTTATCCTCAACCCT 57.918 45.455 0.00 0.00 0.00 4.34
2905 4660 5.367060 ACATAGAACCTCTTATCCTCAACCC 59.633 44.000 0.00 0.00 0.00 4.11
2906 4661 6.487299 ACATAGAACCTCTTATCCTCAACC 57.513 41.667 0.00 0.00 0.00 3.77
2907 4662 7.149307 GCTACATAGAACCTCTTATCCTCAAC 58.851 42.308 0.00 0.00 0.00 3.18
2908 4663 6.267928 GGCTACATAGAACCTCTTATCCTCAA 59.732 42.308 0.00 0.00 0.00 3.02
2909 4664 5.775701 GGCTACATAGAACCTCTTATCCTCA 59.224 44.000 0.00 0.00 0.00 3.86
2910 4665 6.014012 AGGCTACATAGAACCTCTTATCCTC 58.986 44.000 0.00 0.00 0.00 3.71
2911 4666 5.777732 CAGGCTACATAGAACCTCTTATCCT 59.222 44.000 0.00 0.00 0.00 3.24
2912 4667 5.775701 TCAGGCTACATAGAACCTCTTATCC 59.224 44.000 0.00 0.00 0.00 2.59
2913 4668 6.571537 GCTCAGGCTACATAGAACCTCTTATC 60.572 46.154 0.00 0.00 35.22 1.75
2914 4669 5.245075 GCTCAGGCTACATAGAACCTCTTAT 59.755 44.000 0.00 0.00 35.22 1.73
2915 4670 4.585162 GCTCAGGCTACATAGAACCTCTTA 59.415 45.833 0.00 0.00 35.22 2.10
2916 4671 3.386402 GCTCAGGCTACATAGAACCTCTT 59.614 47.826 0.00 0.00 35.22 2.85
2917 4672 2.962421 GCTCAGGCTACATAGAACCTCT 59.038 50.000 0.00 0.00 35.22 3.69
2918 4673 3.378911 GCTCAGGCTACATAGAACCTC 57.621 52.381 0.00 0.00 35.22 3.85
2929 4684 4.041691 AAAGTTCCTTTGTAGCTCAGGCTA 59.958 41.667 0.00 0.00 39.78 3.93
2930 4685 3.181439 AAAGTTCCTTTGTAGCTCAGGCT 60.181 43.478 0.00 0.00 41.04 4.58
2931 4686 2.481289 AGTTCCTTTGTAGCTCAGGC 57.519 50.000 0.00 0.00 39.06 4.85
2932 4687 4.695928 GGTAAAGTTCCTTTGTAGCTCAGG 59.304 45.833 0.00 0.00 35.21 3.86
2933 4688 4.695928 GGGTAAAGTTCCTTTGTAGCTCAG 59.304 45.833 0.00 0.00 35.21 3.35
2934 4689 4.103469 TGGGTAAAGTTCCTTTGTAGCTCA 59.897 41.667 0.00 0.00 35.21 4.26
2935 4690 4.648651 TGGGTAAAGTTCCTTTGTAGCTC 58.351 43.478 0.00 0.00 35.21 4.09
2936 4691 4.652822 CTGGGTAAAGTTCCTTTGTAGCT 58.347 43.478 0.00 0.00 35.21 3.32
2937 4692 3.190744 GCTGGGTAAAGTTCCTTTGTAGC 59.809 47.826 0.00 0.00 35.21 3.58
2938 4693 4.394729 TGCTGGGTAAAGTTCCTTTGTAG 58.605 43.478 0.00 0.00 35.21 2.74
2939 4694 4.440826 TGCTGGGTAAAGTTCCTTTGTA 57.559 40.909 0.00 0.00 35.21 2.41
2940 4695 3.306472 TGCTGGGTAAAGTTCCTTTGT 57.694 42.857 0.00 0.00 35.21 2.83
2941 4696 4.664150 TTTGCTGGGTAAAGTTCCTTTG 57.336 40.909 0.00 0.00 35.21 2.77
2942 4697 6.987403 TTATTTGCTGGGTAAAGTTCCTTT 57.013 33.333 0.00 0.00 37.46 3.11
2943 4698 6.154534 GGATTATTTGCTGGGTAAAGTTCCTT 59.845 38.462 0.00 0.00 0.00 3.36
2944 4699 5.656859 GGATTATTTGCTGGGTAAAGTTCCT 59.343 40.000 0.00 0.00 0.00 3.36
2945 4700 5.656859 AGGATTATTTGCTGGGTAAAGTTCC 59.343 40.000 0.00 0.00 0.00 3.62
2946 4701 6.775594 AGGATTATTTGCTGGGTAAAGTTC 57.224 37.500 0.00 0.00 0.00 3.01
2947 4702 7.234577 TGAAAGGATTATTTGCTGGGTAAAGTT 59.765 33.333 0.00 0.00 0.00 2.66
2948 4703 6.723977 TGAAAGGATTATTTGCTGGGTAAAGT 59.276 34.615 0.00 0.00 0.00 2.66
2949 4704 7.169158 TGAAAGGATTATTTGCTGGGTAAAG 57.831 36.000 0.00 0.00 0.00 1.85
2950 4705 7.180051 ACATGAAAGGATTATTTGCTGGGTAAA 59.820 33.333 0.00 0.00 0.00 2.01
2951 4706 6.667414 ACATGAAAGGATTATTTGCTGGGTAA 59.333 34.615 0.00 0.00 0.00 2.85
2952 4707 6.194235 ACATGAAAGGATTATTTGCTGGGTA 58.806 36.000 0.00 0.00 0.00 3.69
2953 4708 5.025453 ACATGAAAGGATTATTTGCTGGGT 58.975 37.500 0.00 0.00 0.00 4.51
2954 4709 5.361857 AGACATGAAAGGATTATTTGCTGGG 59.638 40.000 0.00 0.00 0.00 4.45
2955 4710 6.461110 AGACATGAAAGGATTATTTGCTGG 57.539 37.500 0.00 0.00 0.00 4.85
2993 4748 2.046892 ACTCATGGCTCGTGCACC 60.047 61.111 12.15 0.00 41.91 5.01
3033 4789 6.183361 CCCATATCCAGTCAGACAAATAGGAA 60.183 42.308 2.66 0.00 0.00 3.36
3051 4807 4.450419 CGAGCTGAATTCAGAACCCATATC 59.550 45.833 34.43 15.78 46.59 1.63
3086 4842 4.555348 AACGATTTTGCCTAAAACACGA 57.445 36.364 15.27 0.00 39.22 4.35
3099 4855 4.559153 CAAAGAGATGGCCAAACGATTTT 58.441 39.130 10.96 3.43 0.00 1.82
3138 4894 3.243805 TGGCACACTCATTTTTCATGGTG 60.244 43.478 0.00 0.00 0.00 4.17
3156 4912 2.477375 GTGAAAACGAACGTAGATGGCA 59.523 45.455 0.00 0.00 0.00 4.92
3169 4925 2.473609 TGACGGAGAAATCGTGAAAACG 59.526 45.455 0.00 0.00 41.22 3.60
3191 4947 0.179174 GGACGAAATGCCGCGAATTT 60.179 50.000 8.23 13.67 0.00 1.82
3196 4952 0.597637 ATCTAGGACGAAATGCCGCG 60.598 55.000 0.00 0.00 0.00 6.46
3198 4954 5.950883 TCTTATATCTAGGACGAAATGCCG 58.049 41.667 0.00 0.00 0.00 5.69
3261 5025 2.225791 CTCGGGTGTCTGATTCGGCA 62.226 60.000 0.00 0.00 0.00 5.69
3277 5041 2.029020 TCAAATGGAGGACAGTGACTCG 60.029 50.000 0.00 0.00 34.58 4.18
3286 5050 3.857052 TCGTACATGTCAAATGGAGGAC 58.143 45.455 0.00 0.00 34.63 3.85
3292 5056 5.567154 TCGCAAATTTCGTACATGTCAAATG 59.433 36.000 0.00 0.00 0.00 2.32
3318 5083 1.215647 GCTCAGATTCGGTGTCGGT 59.784 57.895 0.00 0.00 36.95 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.