Multiple sequence alignment - TraesCS1A01G334000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G334000 chr1A 100.000 3351 0 0 1 3351 521676154 521672804 0.000000e+00 6189.0
1 TraesCS1A01G334000 chr1B 90.332 1986 89 40 990 2919 576224728 576222790 0.000000e+00 2508.0
2 TraesCS1A01G334000 chr1B 94.118 170 5 1 3172 3341 576222019 576221855 1.540000e-63 254.0
3 TraesCS1A01G334000 chr1B 90.355 197 9 4 154 347 576228294 576228105 2.000000e-62 250.0
4 TraesCS1A01G334000 chr1B 80.519 308 23 17 2608 2897 576219656 576219368 5.670000e-48 202.0
5 TraesCS1A01G334000 chr1B 82.787 244 14 15 411 630 576228075 576227836 3.410000e-45 193.0
6 TraesCS1A01G334000 chr1B 81.140 228 12 14 635 844 576225189 576224975 1.610000e-33 154.0
7 TraesCS1A01G334000 chr1D 88.651 1586 64 42 809 2343 426617498 426615978 0.000000e+00 1825.0
8 TraesCS1A01G334000 chr1D 89.831 413 20 8 448 844 426617922 426617516 8.290000e-141 510.0
9 TraesCS1A01G334000 chr1D 92.473 279 18 3 2901 3177 423732330 423732053 2.420000e-106 396.0
10 TraesCS1A01G334000 chr1D 88.732 213 14 6 154 364 426618712 426618508 5.550000e-63 252.0
11 TraesCS1A01G334000 chr1D 86.154 65 7 2 43 105 386950722 386950786 6.000000e-08 69.4
12 TraesCS1A01G334000 chr1D 97.500 40 1 0 407 446 426617979 426617940 6.000000e-08 69.4
13 TraesCS1A01G334000 chr1D 100.000 29 0 0 1 29 459212466 459212438 2.000000e-03 54.7
14 TraesCS1A01G334000 chr4D 95.057 263 13 0 2908 3170 69178038 69178300 6.690000e-112 414.0
15 TraesCS1A01G334000 chr4D 92.910 268 18 1 2906 3173 101626788 101626522 4.050000e-104 388.0
16 TraesCS1A01G334000 chr4D 100.000 29 0 0 1 29 61901190 61901162 2.000000e-03 54.7
17 TraesCS1A01G334000 chr7A 93.916 263 16 0 2908 3170 575454052 575454314 6.740000e-107 398.0
18 TraesCS1A01G334000 chr7A 92.776 263 19 0 2908 3170 610365425 610365687 6.780000e-102 381.0
19 TraesCS1A01G334000 chr2D 93.182 264 18 0 2908 3171 142434368 142434105 4.050000e-104 388.0
20 TraesCS1A01G334000 chr2D 100.000 31 0 0 1 31 53464218 53464248 1.300000e-04 58.4
21 TraesCS1A01G334000 chr3B 91.698 265 22 0 2908 3172 137748310 137748574 5.280000e-98 368.0
22 TraesCS1A01G334000 chr3B 91.144 271 22 2 2908 3178 706775291 706775559 1.900000e-97 366.0
23 TraesCS1A01G334000 chr5A 91.667 264 21 1 2908 3171 595903250 595903512 6.830000e-97 364.0
24 TraesCS1A01G334000 chr5D 91.228 57 3 2 59 113 545648067 545648011 3.590000e-10 76.8
25 TraesCS1A01G334000 chr5D 100.000 30 0 0 1 30 118012631 118012602 4.670000e-04 56.5
26 TraesCS1A01G334000 chr5D 100.000 29 0 0 1 29 270592648 270592676 2.000000e-03 54.7
27 TraesCS1A01G334000 chr4A 100.000 30 0 0 1 30 89413434 89413405 4.670000e-04 56.5
28 TraesCS1A01G334000 chr3A 100.000 30 0 0 1 30 385506553 385506524 4.670000e-04 56.5
29 TraesCS1A01G334000 chr3A 100.000 30 0 0 1 30 595701534 595701505 4.670000e-04 56.5
30 TraesCS1A01G334000 chr2B 100.000 30 0 0 1 30 485182286 485182315 4.670000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G334000 chr1A 521672804 521676154 3350 True 6189.0 6189 100.000000 1 3351 1 chr1A.!!$R1 3350
1 TraesCS1A01G334000 chr1B 576219368 576228294 8926 True 593.5 2508 86.541833 154 3341 6 chr1B.!!$R1 3187
2 TraesCS1A01G334000 chr1D 426615978 426618712 2734 True 664.1 1825 91.178500 154 2343 4 chr1D.!!$R3 2189

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.095417 GAGCAAAATGAGCGGACGAC 59.905 55.0 0.00 0.0 37.01 4.34 F
110 111 0.391528 GCCCCTGCGAATTTTTGCAT 60.392 50.0 5.71 0.0 45.87 3.96 F
560 1111 0.457337 CCGTGCGTCTACCCAAGTAC 60.457 60.0 0.00 0.0 0.00 2.73 F
617 1174 0.532417 CCCACCGGTTGTTACGACAA 60.532 55.0 2.97 0.0 43.23 3.18 F
890 4184 0.548031 TTGAGCAGGTCCATCCATCC 59.452 55.0 0.00 0.0 39.02 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 5177 0.256752 ATGCATGGCTTGGCTAGTGA 59.743 50.000 0.00 0.00 0.00 3.41 R
1789 5178 0.384309 CATGCATGGCTTGGCTAGTG 59.616 55.000 19.40 0.00 31.40 2.74 R
1791 5180 1.362717 GCATGCATGGCTTGGCTAG 59.637 57.895 27.34 0.00 34.84 3.42 R
1792 5181 1.380112 TGCATGCATGGCTTGGCTA 60.380 52.632 27.34 1.28 34.84 3.93 R
2824 6258 1.160137 GACTCTGTGGTGGTGAATGC 58.840 55.000 0.00 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.135843 TGATATAAGGAAATATTTCTACACGCG 57.864 33.333 23.85 3.53 37.35 6.01
38 39 9.350357 GATATAAGGAAATATTTCTACACGCGA 57.650 33.333 23.85 6.58 37.35 5.87
39 40 5.968387 AAGGAAATATTTCTACACGCGAG 57.032 39.130 23.85 7.88 37.35 5.03
40 41 3.802685 AGGAAATATTTCTACACGCGAGC 59.197 43.478 23.85 6.84 37.35 5.03
41 42 3.554324 GGAAATATTTCTACACGCGAGCA 59.446 43.478 23.85 0.00 37.35 4.26
42 43 4.033587 GGAAATATTTCTACACGCGAGCAA 59.966 41.667 23.85 0.00 37.35 3.91
43 44 5.446741 GGAAATATTTCTACACGCGAGCAAA 60.447 40.000 23.85 5.71 37.35 3.68
44 45 5.539582 AATATTTCTACACGCGAGCAAAA 57.460 34.783 15.93 7.08 0.00 2.44
45 46 5.734855 ATATTTCTACACGCGAGCAAAAT 57.265 34.783 15.93 13.91 0.00 1.82
46 47 2.873170 TTCTACACGCGAGCAAAATG 57.127 45.000 15.93 0.00 0.00 2.32
47 48 2.073117 TCTACACGCGAGCAAAATGA 57.927 45.000 15.93 0.00 0.00 2.57
48 49 1.992667 TCTACACGCGAGCAAAATGAG 59.007 47.619 15.93 0.00 0.00 2.90
49 50 0.442310 TACACGCGAGCAAAATGAGC 59.558 50.000 15.93 0.00 0.00 4.26
51 52 2.276868 CGCGAGCAAAATGAGCGG 60.277 61.111 0.00 0.00 46.06 5.52
52 53 2.739704 CGCGAGCAAAATGAGCGGA 61.740 57.895 0.00 0.00 46.06 5.54
53 54 1.226128 GCGAGCAAAATGAGCGGAC 60.226 57.895 0.00 0.00 37.01 4.79
54 55 1.059369 CGAGCAAAATGAGCGGACG 59.941 57.895 0.00 0.00 37.01 4.79
55 56 1.351430 CGAGCAAAATGAGCGGACGA 61.351 55.000 0.00 0.00 37.01 4.20
56 57 0.095417 GAGCAAAATGAGCGGACGAC 59.905 55.000 0.00 0.00 37.01 4.34
58 59 1.419922 CAAAATGAGCGGACGACGG 59.580 57.895 0.00 0.00 44.51 4.79
59 60 1.740296 AAAATGAGCGGACGACGGG 60.740 57.895 0.00 0.00 44.51 5.28
60 61 2.162338 AAAATGAGCGGACGACGGGA 62.162 55.000 0.00 0.00 44.51 5.14
61 62 2.830704 AAATGAGCGGACGACGGGAC 62.831 60.000 0.00 0.00 44.51 4.46
63 64 3.745803 GAGCGGACGACGGGACTT 61.746 66.667 0.00 0.00 44.51 3.01
64 65 3.966026 GAGCGGACGACGGGACTTG 62.966 68.421 0.00 0.00 44.51 3.16
65 66 4.047059 GCGGACGACGGGACTTGA 62.047 66.667 0.00 0.00 44.51 3.02
66 67 2.126580 CGGACGACGGGACTTGAC 60.127 66.667 0.00 0.00 39.42 3.18
67 68 2.911484 CGGACGACGGGACTTGACA 61.911 63.158 0.00 0.00 39.42 3.58
68 69 1.080705 GGACGACGGGACTTGACAG 60.081 63.158 0.00 0.00 0.00 3.51
69 70 1.080705 GACGACGGGACTTGACAGG 60.081 63.158 0.00 0.00 0.00 4.00
70 71 1.803366 GACGACGGGACTTGACAGGT 61.803 60.000 0.00 0.00 0.00 4.00
71 72 1.372997 CGACGGGACTTGACAGGTG 60.373 63.158 0.00 0.00 0.00 4.00
72 73 1.746517 GACGGGACTTGACAGGTGT 59.253 57.895 0.00 0.00 0.00 4.16
73 74 0.600255 GACGGGACTTGACAGGTGTG 60.600 60.000 0.00 0.00 0.00 3.82
74 75 1.335132 ACGGGACTTGACAGGTGTGT 61.335 55.000 0.00 0.00 40.71 3.72
75 76 0.880278 CGGGACTTGACAGGTGTGTG 60.880 60.000 0.00 0.00 36.88 3.82
76 77 1.166531 GGGACTTGACAGGTGTGTGC 61.167 60.000 0.00 0.00 36.88 4.57
77 78 1.166531 GGACTTGACAGGTGTGTGCC 61.167 60.000 0.00 0.00 36.88 5.01
78 79 1.152963 ACTTGACAGGTGTGTGCCC 60.153 57.895 0.00 0.00 36.88 5.36
79 80 1.898574 CTTGACAGGTGTGTGCCCC 60.899 63.158 0.00 0.00 36.88 5.80
80 81 3.429372 TTGACAGGTGTGTGCCCCC 62.429 63.158 0.00 0.00 36.88 5.40
104 105 3.747976 GCGTGCCCCTGCGAATTT 61.748 61.111 0.00 0.00 41.78 1.82
105 106 2.961768 CGTGCCCCTGCGAATTTT 59.038 55.556 0.00 0.00 41.78 1.82
106 107 1.288752 CGTGCCCCTGCGAATTTTT 59.711 52.632 0.00 0.00 41.78 1.94
107 108 1.008361 CGTGCCCCTGCGAATTTTTG 61.008 55.000 0.00 0.00 41.78 2.44
108 109 1.005156 TGCCCCTGCGAATTTTTGC 60.005 52.632 0.00 0.00 41.78 3.68
109 110 1.005156 GCCCCTGCGAATTTTTGCA 60.005 52.632 5.18 5.18 44.93 4.08
110 111 0.391528 GCCCCTGCGAATTTTTGCAT 60.392 50.000 5.71 0.00 45.87 3.96
111 112 1.945355 GCCCCTGCGAATTTTTGCATT 60.945 47.619 5.71 0.00 45.87 3.56
112 113 1.733360 CCCCTGCGAATTTTTGCATTG 59.267 47.619 5.71 1.47 45.87 2.82
113 114 2.415776 CCCTGCGAATTTTTGCATTGT 58.584 42.857 5.71 0.00 45.87 2.71
114 115 2.807392 CCCTGCGAATTTTTGCATTGTT 59.193 40.909 5.71 0.00 45.87 2.83
115 116 3.120580 CCCTGCGAATTTTTGCATTGTTC 60.121 43.478 5.71 0.00 45.87 3.18
116 117 3.120580 CCTGCGAATTTTTGCATTGTTCC 60.121 43.478 5.71 0.00 45.87 3.62
117 118 2.805099 TGCGAATTTTTGCATTGTTCCC 59.195 40.909 1.01 0.00 42.41 3.97
118 119 3.066380 GCGAATTTTTGCATTGTTCCCT 58.934 40.909 0.00 0.00 37.52 4.20
119 120 4.241681 GCGAATTTTTGCATTGTTCCCTA 58.758 39.130 0.00 0.00 37.52 3.53
120 121 4.091365 GCGAATTTTTGCATTGTTCCCTAC 59.909 41.667 0.00 0.00 37.52 3.18
121 122 5.469479 CGAATTTTTGCATTGTTCCCTACT 58.531 37.500 0.00 0.00 0.00 2.57
122 123 5.925969 CGAATTTTTGCATTGTTCCCTACTT 59.074 36.000 0.00 0.00 0.00 2.24
123 124 6.128849 CGAATTTTTGCATTGTTCCCTACTTG 60.129 38.462 0.00 0.00 0.00 3.16
124 125 5.606348 TTTTTGCATTGTTCCCTACTTGT 57.394 34.783 0.00 0.00 0.00 3.16
125 126 6.716934 TTTTTGCATTGTTCCCTACTTGTA 57.283 33.333 0.00 0.00 0.00 2.41
126 127 6.909550 TTTTGCATTGTTCCCTACTTGTAT 57.090 33.333 0.00 0.00 0.00 2.29
127 128 5.895636 TTGCATTGTTCCCTACTTGTATG 57.104 39.130 0.00 0.00 0.00 2.39
128 129 4.917385 TGCATTGTTCCCTACTTGTATGT 58.083 39.130 0.00 0.00 0.00 2.29
129 130 6.056090 TGCATTGTTCCCTACTTGTATGTA 57.944 37.500 0.00 0.00 0.00 2.29
130 131 6.658849 TGCATTGTTCCCTACTTGTATGTAT 58.341 36.000 0.00 0.00 0.00 2.29
131 132 7.116075 TGCATTGTTCCCTACTTGTATGTATT 58.884 34.615 0.00 0.00 0.00 1.89
132 133 8.268605 TGCATTGTTCCCTACTTGTATGTATTA 58.731 33.333 0.00 0.00 0.00 0.98
133 134 9.284968 GCATTGTTCCCTACTTGTATGTATTAT 57.715 33.333 0.00 0.00 0.00 1.28
140 141 9.664777 TCCCTACTTGTATGTATTATTAGTGGT 57.335 33.333 0.00 0.00 0.00 4.16
194 198 7.874016 TGATCGTAGTATTAAGTTTGTGTTGGT 59.126 33.333 0.00 0.00 0.00 3.67
195 199 7.642071 TCGTAGTATTAAGTTTGTGTTGGTC 57.358 36.000 0.00 0.00 0.00 4.02
196 200 7.436118 TCGTAGTATTAAGTTTGTGTTGGTCT 58.564 34.615 0.00 0.00 0.00 3.85
197 201 7.383029 TCGTAGTATTAAGTTTGTGTTGGTCTG 59.617 37.037 0.00 0.00 0.00 3.51
198 202 6.877611 AGTATTAAGTTTGTGTTGGTCTGG 57.122 37.500 0.00 0.00 0.00 3.86
199 203 6.362248 AGTATTAAGTTTGTGTTGGTCTGGT 58.638 36.000 0.00 0.00 0.00 4.00
246 252 4.291540 TGCAAAACAACAAGCTAGTGAG 57.708 40.909 0.00 0.00 0.00 3.51
305 311 1.750193 GCACCCAGCATTACAGCTTA 58.250 50.000 0.00 0.00 43.70 3.09
306 312 2.301346 GCACCCAGCATTACAGCTTAT 58.699 47.619 0.00 0.00 43.70 1.73
307 313 3.476552 GCACCCAGCATTACAGCTTATA 58.523 45.455 0.00 0.00 43.70 0.98
308 314 3.882888 GCACCCAGCATTACAGCTTATAA 59.117 43.478 0.00 0.00 43.70 0.98
347 353 3.181500 CCACCTAATTTAAAGCGCCACTC 60.181 47.826 2.29 0.00 0.00 3.51
348 354 3.014623 ACCTAATTTAAAGCGCCACTCC 58.985 45.455 2.29 0.00 0.00 3.85
349 355 2.357952 CCTAATTTAAAGCGCCACTCCC 59.642 50.000 2.29 0.00 0.00 4.30
351 357 0.683179 ATTTAAAGCGCCACTCCCCC 60.683 55.000 2.29 0.00 0.00 5.40
362 878 1.288335 CCACTCCCCCAGTCTAGTAGT 59.712 57.143 0.00 0.00 30.26 2.73
364 880 1.342175 ACTCCCCCAGTCTAGTAGTGC 60.342 57.143 0.00 0.00 0.00 4.40
384 900 6.232692 AGTGCTGGACTATAGTACTACTAGC 58.767 44.000 16.20 15.63 38.96 3.42
385 901 5.412286 GTGCTGGACTATAGTACTACTAGCC 59.588 48.000 17.98 16.72 33.66 3.93
386 902 4.630940 GCTGGACTATAGTACTACTAGCCG 59.369 50.000 16.20 10.24 33.66 5.52
387 903 5.568423 GCTGGACTATAGTACTACTAGCCGA 60.568 48.000 16.20 0.00 33.66 5.54
388 904 6.035368 TGGACTATAGTACTACTAGCCGAG 57.965 45.833 16.20 0.00 33.66 4.63
389 905 5.046735 TGGACTATAGTACTACTAGCCGAGG 60.047 48.000 16.20 0.00 33.66 4.63
390 906 5.418676 GACTATAGTACTACTAGCCGAGGG 58.581 50.000 5.09 0.00 33.66 4.30
452 986 1.433053 CGATCGACGGTGCTCTCTCT 61.433 60.000 10.26 0.00 38.46 3.10
554 1092 1.518572 CATGACCGTGCGTCTACCC 60.519 63.158 0.00 0.00 42.49 3.69
560 1111 0.457337 CCGTGCGTCTACCCAAGTAC 60.457 60.000 0.00 0.00 0.00 2.73
592 1149 1.519751 CCGGCCGACAAAATGGACAA 61.520 55.000 30.73 0.00 30.25 3.18
600 1157 3.611530 CGACAAAATGGACAATGTCACCC 60.612 47.826 15.86 0.00 41.69 4.61
615 1172 1.069596 ACCCACCGGTTGTTACGAC 59.930 57.895 2.97 0.00 40.58 4.34
616 1173 1.069427 CCCACCGGTTGTTACGACA 59.931 57.895 2.97 0.00 0.00 4.35
617 1174 0.532417 CCCACCGGTTGTTACGACAA 60.532 55.000 2.97 0.00 43.23 3.18
630 1191 2.154854 ACGACAACCTCACATCACAG 57.845 50.000 0.00 0.00 0.00 3.66
682 3886 3.017442 GTTCCCAGAGAATTTACCAGCC 58.983 50.000 0.00 0.00 36.69 4.85
683 3887 2.274542 TCCCAGAGAATTTACCAGCCA 58.725 47.619 0.00 0.00 0.00 4.75
684 3888 2.239654 TCCCAGAGAATTTACCAGCCAG 59.760 50.000 0.00 0.00 0.00 4.85
685 3889 2.019984 CCAGAGAATTTACCAGCCAGC 58.980 52.381 0.00 0.00 0.00 4.85
686 3890 2.019984 CAGAGAATTTACCAGCCAGCC 58.980 52.381 0.00 0.00 0.00 4.85
687 3891 1.918957 AGAGAATTTACCAGCCAGCCT 59.081 47.619 0.00 0.00 0.00 4.58
792 4011 0.882927 TACAGCGGCACAAGGTGAAC 60.883 55.000 1.45 0.00 40.03 3.18
829 4057 1.078497 TGGATCATGTGGCCACGTC 60.078 57.895 28.08 21.64 0.00 4.34
837 4065 4.634703 TGGCCACGTCCGTGCATT 62.635 61.111 14.06 0.00 44.16 3.56
838 4066 4.101790 GGCCACGTCCGTGCATTG 62.102 66.667 14.06 2.24 44.16 2.82
840 4068 4.101790 CCACGTCCGTGCATTGCC 62.102 66.667 14.06 0.00 44.16 4.52
888 4182 1.848388 TGATTGAGCAGGTCCATCCAT 59.152 47.619 10.40 0.00 39.02 3.41
889 4183 2.158711 TGATTGAGCAGGTCCATCCATC 60.159 50.000 10.40 0.00 39.02 3.51
890 4184 0.548031 TTGAGCAGGTCCATCCATCC 59.452 55.000 0.00 0.00 39.02 3.51
891 4185 0.621280 TGAGCAGGTCCATCCATCCA 60.621 55.000 0.00 0.00 39.02 3.41
897 4191 1.607612 GTCCATCCATCCAACGGGT 59.392 57.895 0.00 0.00 34.93 5.28
909 4203 2.361438 TCCAACGGGTTGCGTTTTATTT 59.639 40.909 6.03 0.00 39.16 1.40
910 4204 3.124560 CCAACGGGTTGCGTTTTATTTT 58.875 40.909 6.03 0.00 39.16 1.82
911 4205 4.037208 TCCAACGGGTTGCGTTTTATTTTA 59.963 37.500 6.03 0.00 39.16 1.52
950 4254 0.901827 TTAGAGTGGCTCATTGGCGA 59.098 50.000 0.00 0.00 45.14 5.54
951 4255 1.123077 TAGAGTGGCTCATTGGCGAT 58.877 50.000 0.00 0.00 45.14 4.58
985 4289 2.356069 CTCACACTATCACGCAGCTAGA 59.644 50.000 0.00 0.00 0.00 2.43
986 4290 2.356069 TCACACTATCACGCAGCTAGAG 59.644 50.000 0.00 0.00 0.00 2.43
987 4291 1.066303 ACACTATCACGCAGCTAGAGC 59.934 52.381 0.00 0.00 42.49 4.09
1524 4907 3.060615 AACGGGGAGGACGACGAG 61.061 66.667 0.00 0.00 34.93 4.18
1620 5003 2.435586 CTGCTGCTCCTGAACCCG 60.436 66.667 0.00 0.00 0.00 5.28
1781 5170 1.802960 CAGCTTGCTTCACGTTCTCAT 59.197 47.619 0.00 0.00 0.00 2.90
1783 5172 1.135859 GCTTGCTTCACGTTCTCATGG 60.136 52.381 0.00 0.00 0.00 3.66
1785 5174 2.084610 TGCTTCACGTTCTCATGGAG 57.915 50.000 0.00 0.00 0.00 3.86
1788 5177 3.195610 TGCTTCACGTTCTCATGGAGTAT 59.804 43.478 0.00 0.00 0.00 2.12
1789 5178 3.799420 GCTTCACGTTCTCATGGAGTATC 59.201 47.826 0.00 0.00 0.00 2.24
1790 5179 4.678044 GCTTCACGTTCTCATGGAGTATCA 60.678 45.833 0.00 0.00 36.25 2.15
1791 5180 4.371855 TCACGTTCTCATGGAGTATCAC 57.628 45.455 0.00 0.00 36.25 3.06
1792 5181 4.017126 TCACGTTCTCATGGAGTATCACT 58.983 43.478 0.00 0.00 36.25 3.41
1793 5182 5.190677 TCACGTTCTCATGGAGTATCACTA 58.809 41.667 0.00 0.00 36.25 2.74
1794 5183 5.297029 TCACGTTCTCATGGAGTATCACTAG 59.703 44.000 0.00 0.00 36.25 2.57
1795 5184 4.036971 ACGTTCTCATGGAGTATCACTAGC 59.963 45.833 0.00 0.00 36.25 3.42
1796 5185 4.557695 CGTTCTCATGGAGTATCACTAGCC 60.558 50.000 0.00 0.00 36.25 3.93
1797 5186 4.184649 TCTCATGGAGTATCACTAGCCA 57.815 45.455 0.00 0.00 36.25 4.75
1804 5193 3.397482 GAGTATCACTAGCCAAGCCATG 58.603 50.000 0.00 0.00 33.17 3.66
1946 5344 3.057547 CTGCTCCTGGTCCTCGACG 62.058 68.421 0.00 0.00 32.65 5.12
1998 5396 1.002134 CTCCCAATCCCAAGTGCGT 60.002 57.895 0.00 0.00 0.00 5.24
2210 5608 1.007734 GTGTCGTCGAACAGGCTGA 60.008 57.895 23.66 0.00 0.00 4.26
2300 5698 0.107703 CAGCGATCAGGCCAAGGTTA 60.108 55.000 5.01 0.00 0.00 2.85
2344 5748 5.831997 TGGCAGATACGAATATATGATCCG 58.168 41.667 0.00 0.00 32.64 4.18
2382 5805 5.278660 GCATCCATTTGGTTATGATCTGGTC 60.279 44.000 0.00 0.00 36.34 4.02
2415 5838 4.159693 TCCGCAGCTCAATCTCTAGTAAAA 59.840 41.667 0.00 0.00 0.00 1.52
2445 5868 1.744368 ATCCTGCTGCTCAGTTGCG 60.744 57.895 0.00 0.00 41.25 4.85
2573 6003 4.867047 ACTGCATTTCTCAGTCGATACTTG 59.133 41.667 0.00 0.00 40.47 3.16
2604 6034 3.368013 CGGCTTAGGTACATCAAGTCACA 60.368 47.826 0.00 0.00 0.00 3.58
2737 6171 4.770795 CCCGAAACCATGTCTAGATTCTT 58.229 43.478 0.00 0.00 0.00 2.52
2743 6177 8.973378 CGAAACCATGTCTAGATTCTTTCTATC 58.027 37.037 0.00 0.00 36.35 2.08
2781 6215 3.553095 AACGGCACTGGAGGAAGGC 62.553 63.158 0.00 0.00 0.00 4.35
2834 6268 4.685628 CCATTTACAAACAGCATTCACCAC 59.314 41.667 0.00 0.00 0.00 4.16
2837 6271 1.408702 ACAAACAGCATTCACCACCAC 59.591 47.619 0.00 0.00 0.00 4.16
2859 6293 4.226846 ACAGAGTCAAATCCACATCCATCT 59.773 41.667 0.00 0.00 0.00 2.90
2905 6339 7.573283 GCAGAGATTGCGAGTACATAGTACATA 60.573 40.741 9.68 0.00 44.09 2.29
2906 6340 7.746916 CAGAGATTGCGAGTACATAGTACATAC 59.253 40.741 9.68 0.00 0.00 2.39
2907 6341 7.662258 AGAGATTGCGAGTACATAGTACATACT 59.338 37.037 9.68 0.00 40.24 2.12
2919 6353 4.084011 AGTACATACTACTCCCTCCGTC 57.916 50.000 0.00 0.00 34.13 4.79
2921 6355 1.236628 CATACTACTCCCTCCGTCCG 58.763 60.000 0.00 0.00 0.00 4.79
2922 6356 0.536915 ATACTACTCCCTCCGTCCGC 60.537 60.000 0.00 0.00 0.00 5.54
2923 6357 2.930385 TACTACTCCCTCCGTCCGCG 62.930 65.000 0.00 0.00 37.95 6.46
2927 6361 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
2928 6362 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
2929 6363 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
2930 6364 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
2931 6365 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
2932 6366 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
2933 6367 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
2934 6368 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
2935 6369 1.467883 CCGTCCGCGAATAAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
2936 6370 2.456989 CGTCCGCGAATAAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
2938 6372 3.703420 GTCCGCGAATAAGTGTACATCT 58.297 45.455 8.23 0.00 0.00 2.90
2939 6373 4.553351 CGTCCGCGAATAAGTGTACATCTA 60.553 45.833 8.23 0.00 41.33 1.98
2940 6374 4.674211 GTCCGCGAATAAGTGTACATCTAC 59.326 45.833 8.23 0.00 0.00 2.59
2944 6378 5.747197 CGCGAATAAGTGTACATCTACCTTT 59.253 40.000 0.00 0.00 0.00 3.11
2945 6379 6.255020 CGCGAATAAGTGTACATCTACCTTTT 59.745 38.462 0.00 0.00 0.00 2.27
2946 6380 7.399523 GCGAATAAGTGTACATCTACCTTTTG 58.600 38.462 0.00 0.00 0.00 2.44
2947 6381 7.064253 GCGAATAAGTGTACATCTACCTTTTGT 59.936 37.037 0.00 0.00 0.00 2.83
2948 6382 8.592998 CGAATAAGTGTACATCTACCTTTTGTC 58.407 37.037 0.00 0.00 0.00 3.18
2949 6383 8.788325 AATAAGTGTACATCTACCTTTTGTCC 57.212 34.615 0.00 0.00 0.00 4.02
2950 6384 6.435292 AAGTGTACATCTACCTTTTGTCCT 57.565 37.500 0.00 0.00 0.00 3.85
2951 6385 7.549147 AAGTGTACATCTACCTTTTGTCCTA 57.451 36.000 0.00 0.00 0.00 2.94
2952 6386 7.549147 AGTGTACATCTACCTTTTGTCCTAA 57.451 36.000 0.00 0.00 0.00 2.69
2953 6387 7.612677 AGTGTACATCTACCTTTTGTCCTAAG 58.387 38.462 0.00 0.00 0.00 2.18
2954 6388 6.817140 GTGTACATCTACCTTTTGTCCTAAGG 59.183 42.308 0.00 0.00 46.17 2.69
2955 6389 4.844884 ACATCTACCTTTTGTCCTAAGGC 58.155 43.478 0.00 0.00 44.91 4.35
2957 6391 4.986054 TCTACCTTTTGTCCTAAGGCAA 57.014 40.909 0.00 0.00 44.91 4.52
2958 6392 5.313280 TCTACCTTTTGTCCTAAGGCAAA 57.687 39.130 0.00 2.44 44.91 3.68
2959 6393 5.313712 TCTACCTTTTGTCCTAAGGCAAAG 58.686 41.667 0.00 0.00 44.91 2.77
2960 6394 3.910989 ACCTTTTGTCCTAAGGCAAAGT 58.089 40.909 0.00 0.00 44.91 2.66
2961 6395 4.286707 ACCTTTTGTCCTAAGGCAAAGTT 58.713 39.130 0.00 0.00 44.91 2.66
2962 6396 4.714802 ACCTTTTGTCCTAAGGCAAAGTTT 59.285 37.500 0.00 0.00 44.91 2.66
2963 6397 5.188948 ACCTTTTGTCCTAAGGCAAAGTTTT 59.811 36.000 0.00 0.00 44.91 2.43
2964 6398 6.112734 CCTTTTGTCCTAAGGCAAAGTTTTT 58.887 36.000 5.70 0.00 36.08 1.94
2965 6399 7.093245 ACCTTTTGTCCTAAGGCAAAGTTTTTA 60.093 33.333 0.00 0.00 44.91 1.52
3051 6485 6.642707 AAAGTACATTTCAAAACGGATCCA 57.357 33.333 13.41 0.00 0.00 3.41
3055 6489 4.141287 ACATTTCAAAACGGATCCAGTGA 58.859 39.130 13.41 6.08 0.00 3.41
3056 6490 4.766891 ACATTTCAAAACGGATCCAGTGAT 59.233 37.500 13.41 1.54 0.00 3.06
3057 6491 5.943416 ACATTTCAAAACGGATCCAGTGATA 59.057 36.000 13.41 4.79 0.00 2.15
3059 6493 4.819105 TCAAAACGGATCCAGTGATACT 57.181 40.909 13.41 0.00 28.65 2.12
3060 6494 5.925506 TCAAAACGGATCCAGTGATACTA 57.074 39.130 13.41 0.00 28.65 1.82
3062 6496 6.884832 TCAAAACGGATCCAGTGATACTAAT 58.115 36.000 13.41 0.00 28.65 1.73
3064 6498 7.827236 TCAAAACGGATCCAGTGATACTAATTT 59.173 33.333 13.41 3.36 28.65 1.82
3065 6499 9.104965 CAAAACGGATCCAGTGATACTAATTTA 57.895 33.333 13.41 0.00 28.65 1.40
3066 6500 8.888579 AAACGGATCCAGTGATACTAATTTAG 57.111 34.615 13.41 1.79 28.65 1.85
3067 6501 7.598759 ACGGATCCAGTGATACTAATTTAGT 57.401 36.000 13.41 13.36 42.68 2.24
3068 6502 7.434492 ACGGATCCAGTGATACTAATTTAGTG 58.566 38.462 17.47 1.77 39.81 2.74
3069 6503 7.069578 ACGGATCCAGTGATACTAATTTAGTGT 59.930 37.037 17.47 11.79 39.81 3.55
3070 6504 7.595502 CGGATCCAGTGATACTAATTTAGTGTC 59.404 40.741 20.41 20.41 44.30 3.67
3083 6517 9.613428 ACTAATTTAGTGTCATAAATGCTGCTA 57.387 29.630 8.27 0.00 37.69 3.49
3085 6519 8.511604 AATTTAGTGTCATAAATGCTGCTACT 57.488 30.769 0.00 0.00 35.91 2.57
3089 6523 6.846350 AGTGTCATAAATGCTGCTACTTTTC 58.154 36.000 0.00 0.00 0.00 2.29
3091 6525 5.945784 TGTCATAAATGCTGCTACTTTTCCT 59.054 36.000 0.00 0.00 0.00 3.36
3092 6526 6.434028 TGTCATAAATGCTGCTACTTTTCCTT 59.566 34.615 0.00 0.00 0.00 3.36
3093 6527 7.609918 TGTCATAAATGCTGCTACTTTTCCTTA 59.390 33.333 0.00 0.00 0.00 2.69
3094 6528 8.624776 GTCATAAATGCTGCTACTTTTCCTTAT 58.375 33.333 0.00 0.00 0.00 1.73
3101 6535 7.816640 TGCTGCTACTTTTCCTTATAAAGTTG 58.183 34.615 0.00 6.06 41.69 3.16
3102 6536 7.094377 TGCTGCTACTTTTCCTTATAAAGTTGG 60.094 37.037 0.00 2.81 41.69 3.77
3103 6537 7.094334 GCTGCTACTTTTCCTTATAAAGTTGGT 60.094 37.037 6.33 0.00 41.69 3.67
3106 6540 8.789762 GCTACTTTTCCTTATAAAGTTGGTCAA 58.210 33.333 6.33 0.00 41.69 3.18
3142 6576 9.945904 ACTTTGACTTAGGATAAAAGGTAGAAG 57.054 33.333 0.00 0.00 33.20 2.85
3143 6577 9.945904 CTTTGACTTAGGATAAAAGGTAGAAGT 57.054 33.333 0.00 0.00 0.00 3.01
3146 6580 9.537852 TGACTTAGGATAAAAGGTAGAAGTACA 57.462 33.333 0.00 0.00 0.00 2.90
3147 6581 9.800433 GACTTAGGATAAAAGGTAGAAGTACAC 57.200 37.037 0.00 0.00 0.00 2.90
3148 6582 9.544579 ACTTAGGATAAAAGGTAGAAGTACACT 57.455 33.333 0.00 0.00 0.00 3.55
3155 6589 7.592439 AAAAGGTAGAAGTACACTTATTCGC 57.408 36.000 0.00 0.00 36.11 4.70
3157 6591 4.040376 GGTAGAAGTACACTTATTCGCGG 58.960 47.826 6.13 0.00 36.11 6.46
3158 6592 4.201950 GGTAGAAGTACACTTATTCGCGGA 60.202 45.833 6.13 0.00 36.11 5.54
3159 6593 3.767278 AGAAGTACACTTATTCGCGGAC 58.233 45.455 6.13 0.00 36.11 4.79
3161 6595 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
3163 6597 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63
3165 6599 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
3167 6601 1.731433 TTATTCGCGGACGGAGGGAG 61.731 60.000 6.13 0.00 40.63 4.30
3168 6602 2.898920 TATTCGCGGACGGAGGGAGT 62.899 60.000 6.13 0.00 40.63 3.85
3169 6603 2.898920 ATTCGCGGACGGAGGGAGTA 62.899 60.000 6.13 0.00 40.63 2.59
3181 7133 3.488363 GGAGGGAGTACGATGTATCACT 58.512 50.000 0.00 0.00 0.00 3.41
3251 7203 1.488812 ACCCTGCTCACAAGTACACAA 59.511 47.619 0.00 0.00 0.00 3.33
3252 7204 1.873591 CCCTGCTCACAAGTACACAAC 59.126 52.381 0.00 0.00 0.00 3.32
3254 7206 2.287915 CCTGCTCACAAGTACACAACAC 59.712 50.000 0.00 0.00 0.00 3.32
3256 7208 2.675844 TGCTCACAAGTACACAACACAC 59.324 45.455 0.00 0.00 0.00 3.82
3257 7209 2.285602 GCTCACAAGTACACAACACACG 60.286 50.000 0.00 0.00 0.00 4.49
3258 7210 3.183754 CTCACAAGTACACAACACACGA 58.816 45.455 0.00 0.00 0.00 4.35
3259 7211 3.787785 TCACAAGTACACAACACACGAT 58.212 40.909 0.00 0.00 0.00 3.73
3260 7212 3.553917 TCACAAGTACACAACACACGATG 59.446 43.478 0.00 0.00 0.00 3.84
3293 7245 3.929610 TCACACGATAAAATCATGACGCA 59.070 39.130 0.00 0.00 0.00 5.24
3323 7275 6.818644 TCCTAGCACTTTCTTCAATACATGAC 59.181 38.462 0.00 0.00 37.92 3.06
3328 7280 7.334421 AGCACTTTCTTCAATACATGACGTAAT 59.666 33.333 0.00 0.00 37.92 1.89
3341 7293 6.115446 ACATGACGTAATCAAAGGACATGAT 58.885 36.000 11.91 0.00 41.93 2.45
3342 7294 6.037500 ACATGACGTAATCAAAGGACATGATG 59.962 38.462 11.91 0.00 41.93 3.07
3344 7296 6.169800 TGACGTAATCAAAGGACATGATGAA 58.830 36.000 0.00 0.00 37.58 2.57
3345 7297 6.823182 TGACGTAATCAAAGGACATGATGAAT 59.177 34.615 0.00 0.00 37.58 2.57
3346 7298 7.336679 TGACGTAATCAAAGGACATGATGAATT 59.663 33.333 0.00 0.00 37.58 2.17
3347 7299 8.055279 ACGTAATCAAAGGACATGATGAATTT 57.945 30.769 0.00 0.00 37.58 1.82
3348 7300 7.970061 ACGTAATCAAAGGACATGATGAATTTG 59.030 33.333 0.00 7.33 37.58 2.32
3349 7301 7.970061 CGTAATCAAAGGACATGATGAATTTGT 59.030 33.333 0.00 0.00 37.58 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.135843 CGCGTGTAGAAATATTTCCTTATATCA 57.864 33.333 21.86 9.79 37.92 2.15
12 13 9.350357 TCGCGTGTAGAAATATTTCCTTATATC 57.650 33.333 21.86 7.80 37.92 1.63
13 14 9.355215 CTCGCGTGTAGAAATATTTCCTTATAT 57.645 33.333 21.86 7.44 37.92 0.86
14 15 7.327761 GCTCGCGTGTAGAAATATTTCCTTATA 59.672 37.037 21.86 7.51 37.92 0.98
15 16 6.145696 GCTCGCGTGTAGAAATATTTCCTTAT 59.854 38.462 21.86 8.42 37.92 1.73
16 17 5.461078 GCTCGCGTGTAGAAATATTTCCTTA 59.539 40.000 21.86 8.48 37.92 2.69
17 18 4.270325 GCTCGCGTGTAGAAATATTTCCTT 59.730 41.667 21.86 9.40 37.92 3.36
18 19 3.802685 GCTCGCGTGTAGAAATATTTCCT 59.197 43.478 21.86 13.02 37.92 3.36
19 20 3.554324 TGCTCGCGTGTAGAAATATTTCC 59.446 43.478 21.86 10.28 37.92 3.13
20 21 4.772046 TGCTCGCGTGTAGAAATATTTC 57.228 40.909 18.70 18.70 37.45 2.17
21 22 5.539582 TTTGCTCGCGTGTAGAAATATTT 57.460 34.783 5.77 0.00 0.00 1.40
22 23 5.539582 TTTTGCTCGCGTGTAGAAATATT 57.460 34.783 5.77 0.00 0.00 1.28
23 24 5.293324 TCATTTTGCTCGCGTGTAGAAATAT 59.707 36.000 5.77 0.00 0.00 1.28
24 25 4.627900 TCATTTTGCTCGCGTGTAGAAATA 59.372 37.500 5.77 0.00 0.00 1.40
25 26 3.435327 TCATTTTGCTCGCGTGTAGAAAT 59.565 39.130 5.77 9.28 0.00 2.17
26 27 2.803386 TCATTTTGCTCGCGTGTAGAAA 59.197 40.909 5.77 7.43 0.00 2.52
27 28 2.409012 TCATTTTGCTCGCGTGTAGAA 58.591 42.857 5.77 5.22 0.00 2.10
28 29 1.992667 CTCATTTTGCTCGCGTGTAGA 59.007 47.619 5.77 0.00 0.00 2.59
29 30 1.527793 GCTCATTTTGCTCGCGTGTAG 60.528 52.381 5.77 0.00 0.00 2.74
30 31 0.442310 GCTCATTTTGCTCGCGTGTA 59.558 50.000 5.77 0.00 0.00 2.90
31 32 1.207593 GCTCATTTTGCTCGCGTGT 59.792 52.632 5.77 0.00 0.00 4.49
32 33 1.860423 CGCTCATTTTGCTCGCGTG 60.860 57.895 5.77 4.44 39.07 5.34
33 34 2.476051 CGCTCATTTTGCTCGCGT 59.524 55.556 5.77 0.00 39.07 6.01
34 35 2.276868 CCGCTCATTTTGCTCGCG 60.277 61.111 0.00 0.00 43.08 5.87
35 36 1.226128 GTCCGCTCATTTTGCTCGC 60.226 57.895 0.00 0.00 0.00 5.03
36 37 1.059369 CGTCCGCTCATTTTGCTCG 59.941 57.895 0.00 0.00 0.00 5.03
37 38 0.095417 GTCGTCCGCTCATTTTGCTC 59.905 55.000 0.00 0.00 0.00 4.26
38 39 1.626654 CGTCGTCCGCTCATTTTGCT 61.627 55.000 0.00 0.00 0.00 3.91
39 40 1.225745 CGTCGTCCGCTCATTTTGC 60.226 57.895 0.00 0.00 0.00 3.68
40 41 1.419922 CCGTCGTCCGCTCATTTTG 59.580 57.895 0.00 0.00 34.38 2.44
41 42 1.740296 CCCGTCGTCCGCTCATTTT 60.740 57.895 0.00 0.00 34.38 1.82
42 43 2.125673 CCCGTCGTCCGCTCATTT 60.126 61.111 0.00 0.00 34.38 2.32
43 44 3.066190 TCCCGTCGTCCGCTCATT 61.066 61.111 0.00 0.00 34.38 2.57
44 45 3.823330 GTCCCGTCGTCCGCTCAT 61.823 66.667 0.00 0.00 34.38 2.90
46 47 3.745803 AAGTCCCGTCGTCCGCTC 61.746 66.667 0.00 0.00 34.38 5.03
47 48 4.052229 CAAGTCCCGTCGTCCGCT 62.052 66.667 0.00 0.00 34.38 5.52
48 49 4.047059 TCAAGTCCCGTCGTCCGC 62.047 66.667 0.00 0.00 34.38 5.54
49 50 2.126580 GTCAAGTCCCGTCGTCCG 60.127 66.667 0.00 0.00 0.00 4.79
50 51 1.080705 CTGTCAAGTCCCGTCGTCC 60.081 63.158 0.00 0.00 0.00 4.79
51 52 1.080705 CCTGTCAAGTCCCGTCGTC 60.081 63.158 0.00 0.00 0.00 4.20
52 53 1.831286 ACCTGTCAAGTCCCGTCGT 60.831 57.895 0.00 0.00 0.00 4.34
53 54 1.372997 CACCTGTCAAGTCCCGTCG 60.373 63.158 0.00 0.00 0.00 5.12
54 55 0.600255 CACACCTGTCAAGTCCCGTC 60.600 60.000 0.00 0.00 0.00 4.79
55 56 1.335132 ACACACCTGTCAAGTCCCGT 61.335 55.000 0.00 0.00 0.00 5.28
56 57 0.880278 CACACACCTGTCAAGTCCCG 60.880 60.000 0.00 0.00 0.00 5.14
57 58 1.166531 GCACACACCTGTCAAGTCCC 61.167 60.000 0.00 0.00 0.00 4.46
58 59 1.166531 GGCACACACCTGTCAAGTCC 61.167 60.000 0.00 0.00 0.00 3.85
59 60 1.166531 GGGCACACACCTGTCAAGTC 61.167 60.000 0.00 0.00 0.00 3.01
60 61 1.152963 GGGCACACACCTGTCAAGT 60.153 57.895 0.00 0.00 0.00 3.16
61 62 1.898574 GGGGCACACACCTGTCAAG 60.899 63.158 0.00 0.00 0.00 3.02
62 63 2.194597 GGGGCACACACCTGTCAA 59.805 61.111 0.00 0.00 0.00 3.18
63 64 3.884774 GGGGGCACACACCTGTCA 61.885 66.667 0.00 0.00 0.00 3.58
87 88 2.763627 AAAAATTCGCAGGGGCACGC 62.764 55.000 0.00 0.00 41.24 5.34
88 89 1.008361 CAAAAATTCGCAGGGGCACG 61.008 55.000 0.00 0.00 41.24 5.34
89 90 1.291184 GCAAAAATTCGCAGGGGCAC 61.291 55.000 0.00 0.00 41.24 5.01
90 91 1.005156 GCAAAAATTCGCAGGGGCA 60.005 52.632 0.00 0.00 41.24 5.36
91 92 0.391528 ATGCAAAAATTCGCAGGGGC 60.392 50.000 0.00 0.00 42.37 5.80
92 93 1.733360 CAATGCAAAAATTCGCAGGGG 59.267 47.619 0.00 0.00 42.37 4.79
93 94 2.415776 ACAATGCAAAAATTCGCAGGG 58.584 42.857 0.00 1.67 42.37 4.45
94 95 3.120580 GGAACAATGCAAAAATTCGCAGG 60.121 43.478 0.00 1.95 42.37 4.85
95 96 3.120580 GGGAACAATGCAAAAATTCGCAG 60.121 43.478 12.50 0.00 42.37 5.18
96 97 2.805099 GGGAACAATGCAAAAATTCGCA 59.195 40.909 12.50 0.29 43.45 5.10
97 98 3.066380 AGGGAACAATGCAAAAATTCGC 58.934 40.909 0.00 1.29 33.68 4.70
98 99 5.469479 AGTAGGGAACAATGCAAAAATTCG 58.531 37.500 0.00 0.00 0.00 3.34
99 100 6.705825 ACAAGTAGGGAACAATGCAAAAATTC 59.294 34.615 0.00 0.00 0.00 2.17
100 101 6.591001 ACAAGTAGGGAACAATGCAAAAATT 58.409 32.000 0.00 0.00 0.00 1.82
101 102 6.173427 ACAAGTAGGGAACAATGCAAAAAT 57.827 33.333 0.00 0.00 0.00 1.82
102 103 5.606348 ACAAGTAGGGAACAATGCAAAAA 57.394 34.783 0.00 0.00 0.00 1.94
103 104 6.266558 ACATACAAGTAGGGAACAATGCAAAA 59.733 34.615 0.00 0.00 0.00 2.44
104 105 5.772672 ACATACAAGTAGGGAACAATGCAAA 59.227 36.000 0.00 0.00 0.00 3.68
105 106 5.321102 ACATACAAGTAGGGAACAATGCAA 58.679 37.500 0.00 0.00 0.00 4.08
106 107 4.917385 ACATACAAGTAGGGAACAATGCA 58.083 39.130 0.00 0.00 0.00 3.96
107 108 7.568199 AATACATACAAGTAGGGAACAATGC 57.432 36.000 0.00 0.00 0.00 3.56
114 115 9.664777 ACCACTAATAATACATACAAGTAGGGA 57.335 33.333 0.00 0.00 0.00 4.20
148 149 8.251026 ACGATCATTCTTGTATTCTGTTGTAGA 58.749 33.333 0.00 0.00 0.00 2.59
149 150 8.412608 ACGATCATTCTTGTATTCTGTTGTAG 57.587 34.615 0.00 0.00 0.00 2.74
150 151 9.516314 CTACGATCATTCTTGTATTCTGTTGTA 57.484 33.333 0.00 0.00 0.00 2.41
151 152 8.035394 ACTACGATCATTCTTGTATTCTGTTGT 58.965 33.333 0.00 0.00 0.00 3.32
152 153 8.412608 ACTACGATCATTCTTGTATTCTGTTG 57.587 34.615 0.00 0.00 0.00 3.33
194 198 3.009033 CCAATTTACACCTCTGGACCAGA 59.991 47.826 22.97 22.97 38.25 3.86
195 199 3.347216 CCAATTTACACCTCTGGACCAG 58.653 50.000 15.99 15.99 0.00 4.00
196 200 2.554344 GCCAATTTACACCTCTGGACCA 60.554 50.000 0.00 0.00 0.00 4.02
197 201 2.092323 GCCAATTTACACCTCTGGACC 58.908 52.381 0.00 0.00 0.00 4.46
198 202 2.488153 GTGCCAATTTACACCTCTGGAC 59.512 50.000 0.00 0.00 0.00 4.02
199 203 2.375174 AGTGCCAATTTACACCTCTGGA 59.625 45.455 4.37 0.00 37.51 3.86
246 252 4.036262 ACTCTGATCTGTATTCTGTCTCGC 59.964 45.833 0.00 0.00 0.00 5.03
255 261 3.430929 GGCCAACGACTCTGATCTGTATT 60.431 47.826 0.00 0.00 0.00 1.89
347 353 1.115467 CAGCACTACTAGACTGGGGG 58.885 60.000 0.00 0.00 0.00 5.40
348 354 1.115467 CCAGCACTACTAGACTGGGG 58.885 60.000 16.29 0.31 44.90 4.96
349 355 2.621929 AGTCCAGCACTACTAGACTGGG 60.622 54.545 20.55 9.53 44.48 4.45
351 357 6.292923 ACTATAGTCCAGCACTACTAGACTG 58.707 44.000 0.00 0.26 45.52 3.51
362 878 5.558818 GGCTAGTAGTACTATAGTCCAGCA 58.441 45.833 9.12 0.00 29.08 4.41
364 880 6.035368 TCGGCTAGTAGTACTATAGTCCAG 57.965 45.833 9.12 0.44 29.08 3.86
391 907 0.532862 GGTGTGATATGTGCCTCGGG 60.533 60.000 0.00 0.00 0.00 5.14
392 908 0.177836 TGGTGTGATATGTGCCTCGG 59.822 55.000 0.00 0.00 0.00 4.63
393 909 1.575244 CTGGTGTGATATGTGCCTCG 58.425 55.000 0.00 0.00 0.00 4.63
394 910 1.486310 TCCTGGTGTGATATGTGCCTC 59.514 52.381 0.00 0.00 0.00 4.70
395 911 1.487976 CTCCTGGTGTGATATGTGCCT 59.512 52.381 0.00 0.00 0.00 4.75
396 912 1.486310 TCTCCTGGTGTGATATGTGCC 59.514 52.381 0.00 0.00 0.00 5.01
397 913 2.169352 ACTCTCCTGGTGTGATATGTGC 59.831 50.000 4.97 0.00 0.00 4.57
398 914 4.889995 TCTACTCTCCTGGTGTGATATGTG 59.110 45.833 4.97 0.00 0.00 3.21
399 915 5.130705 TCTACTCTCCTGGTGTGATATGT 57.869 43.478 4.97 0.00 0.00 2.29
400 916 6.453943 CATTCTACTCTCCTGGTGTGATATG 58.546 44.000 4.97 0.66 0.00 1.78
401 917 5.541868 CCATTCTACTCTCCTGGTGTGATAT 59.458 44.000 4.97 0.00 0.00 1.63
402 918 4.895889 CCATTCTACTCTCCTGGTGTGATA 59.104 45.833 4.97 0.00 0.00 2.15
403 919 3.708631 CCATTCTACTCTCCTGGTGTGAT 59.291 47.826 4.97 0.00 0.00 3.06
404 920 3.099905 CCATTCTACTCTCCTGGTGTGA 58.900 50.000 4.97 0.00 0.00 3.58
405 921 3.099905 TCCATTCTACTCTCCTGGTGTG 58.900 50.000 0.00 0.00 0.00 3.82
530 1068 1.897398 GACGCACGGTCATGGTCAAC 61.897 60.000 0.00 0.00 45.36 3.18
615 1172 3.026630 ACGTACTGTGATGTGAGGTTG 57.973 47.619 0.00 0.00 0.00 3.77
616 1173 6.710597 ATATACGTACTGTGATGTGAGGTT 57.289 37.500 0.00 0.00 0.00 3.50
617 1174 6.206243 GGTATATACGTACTGTGATGTGAGGT 59.794 42.308 6.79 0.00 0.00 3.85
630 1191 6.532657 CCCCAATTTCGATGGTATATACGTAC 59.467 42.308 6.79 0.00 36.14 3.67
682 3886 3.905678 CGGCGTCCTCCTAGGCTG 61.906 72.222 2.96 0.00 34.61 4.85
685 3889 2.203509 ATCCGGCGTCCTCCTAGG 60.204 66.667 6.01 0.82 36.46 3.02
686 3890 2.618219 CGATCCGGCGTCCTCCTAG 61.618 68.421 6.01 0.00 0.00 3.02
687 3891 2.593725 CGATCCGGCGTCCTCCTA 60.594 66.667 6.01 0.00 0.00 2.94
739 3956 3.891586 TTGCTCGTCGTCGGCTGTC 62.892 63.158 13.99 0.00 37.69 3.51
837 4065 0.391793 TCGTTGTGATAATGCCGGCA 60.392 50.000 34.80 34.80 0.00 5.69
838 4066 0.944386 ATCGTTGTGATAATGCCGGC 59.056 50.000 22.73 22.73 34.83 6.13
840 4068 4.299155 AGTAGATCGTTGTGATAATGCCG 58.701 43.478 0.00 0.00 37.47 5.69
897 4191 6.698380 TGGCCCTTAATAAAATAAAACGCAA 58.302 32.000 0.00 0.00 0.00 4.85
909 4203 2.105821 CCACCGATCTGGCCCTTAATAA 59.894 50.000 0.00 0.00 43.94 1.40
910 4204 1.697432 CCACCGATCTGGCCCTTAATA 59.303 52.381 0.00 0.00 43.94 0.98
911 4205 0.474184 CCACCGATCTGGCCCTTAAT 59.526 55.000 0.00 0.00 43.94 1.40
986 4290 2.590007 CCATGGCCGAGCACTAGC 60.590 66.667 0.00 0.00 42.56 3.42
987 4291 2.590007 GCCATGGCCGAGCACTAG 60.590 66.667 27.24 0.00 34.56 2.57
1221 4586 2.277628 GAGAGCGCGTCCGAGAAG 60.278 66.667 8.43 0.00 36.29 2.85
1242 4607 2.125512 GTGTAGCAGCTGTCGGGG 60.126 66.667 16.64 0.00 0.00 5.73
1386 4757 4.332637 GTGTTGGCAGCAGCGGTG 62.333 66.667 10.98 10.98 43.41 4.94
1407 4778 4.704833 CTGTCGCTGGTGGGGGTG 62.705 72.222 0.00 0.00 0.00 4.61
1410 4781 3.953775 AACCTGTCGCTGGTGGGG 61.954 66.667 8.66 0.00 35.88 4.96
1411 4782 2.669569 CAACCTGTCGCTGGTGGG 60.670 66.667 8.66 2.74 35.88 4.61
1412 4783 3.357079 GCAACCTGTCGCTGGTGG 61.357 66.667 8.66 7.33 35.88 4.61
1413 4784 3.357079 GGCAACCTGTCGCTGGTG 61.357 66.667 8.66 5.57 35.88 4.17
1414 4785 4.988598 CGGCAACCTGTCGCTGGT 62.989 66.667 3.26 3.26 39.15 4.00
1560 4943 3.909086 GAGCAGCCCGCACTTCCTT 62.909 63.158 0.00 0.00 46.13 3.36
1781 5170 1.762957 GGCTTGGCTAGTGATACTCCA 59.237 52.381 0.00 0.00 0.00 3.86
1783 5172 3.397482 CATGGCTTGGCTAGTGATACTC 58.603 50.000 0.00 0.00 0.00 2.59
1785 5174 1.876156 GCATGGCTTGGCTAGTGATAC 59.124 52.381 2.33 0.00 0.00 2.24
1788 5177 0.256752 ATGCATGGCTTGGCTAGTGA 59.743 50.000 0.00 0.00 0.00 3.41
1789 5178 0.384309 CATGCATGGCTTGGCTAGTG 59.616 55.000 19.40 0.00 31.40 2.74
1790 5179 1.389609 GCATGCATGGCTTGGCTAGT 61.390 55.000 27.34 0.00 34.84 2.57
1791 5180 1.362717 GCATGCATGGCTTGGCTAG 59.637 57.895 27.34 0.00 34.84 3.42
1792 5181 1.380112 TGCATGCATGGCTTGGCTA 60.380 52.632 27.34 1.28 34.84 3.93
1793 5182 2.682136 TGCATGCATGGCTTGGCT 60.682 55.556 27.34 0.00 34.84 4.75
1794 5183 2.510691 GTGCATGCATGGCTTGGC 60.511 61.111 25.64 12.83 34.84 4.52
1795 5184 2.202690 CGTGCATGCATGGCTTGG 60.203 61.111 28.79 7.63 34.84 3.61
1796 5185 1.515519 GACGTGCATGCATGGCTTG 60.516 57.895 36.26 19.15 37.94 4.01
1797 5186 2.879907 GACGTGCATGCATGGCTT 59.120 55.556 36.26 20.72 37.94 4.35
1804 5193 1.733912 TCAAGATCAAGACGTGCATGC 59.266 47.619 11.82 11.82 0.00 4.06
1903 5301 3.684369 ATGGGTGGCCTTGGGATGC 62.684 63.158 3.32 0.00 0.00 3.91
1928 5326 2.888863 GTCGAGGACCAGGAGCAG 59.111 66.667 0.00 0.00 0.00 4.24
2210 5608 1.671054 CCATGAACGAAGTGGCCGT 60.671 57.895 0.00 0.00 45.00 5.68
2300 5698 2.031616 CCTGGCGCCATGATCGAT 59.968 61.111 32.87 0.00 0.00 3.59
2321 5725 5.359860 ACGGATCATATATTCGTATCTGCCA 59.640 40.000 0.00 0.00 32.03 4.92
2344 5748 2.972625 TGGATGCAACTACACTAGCAC 58.027 47.619 0.00 0.00 40.14 4.40
2415 5838 3.390639 AGCAGCAGGATGAGCTTATTACT 59.609 43.478 0.00 0.00 44.71 2.24
2604 6034 5.741673 GCAATGTAACCCTTTTGTGGTCATT 60.742 40.000 0.00 0.00 34.15 2.57
2679 6112 8.862085 TGCATTGATAAATCATAATGACCATGT 58.138 29.630 8.24 0.00 36.56 3.21
2715 6149 4.408182 AGAATCTAGACATGGTTTCGGG 57.592 45.455 0.00 0.00 0.00 5.14
2743 6177 6.505272 CCGTTTTACTCCTCAAGGTAGATAG 58.495 44.000 0.00 0.00 36.34 2.08
2824 6258 1.160137 GACTCTGTGGTGGTGAATGC 58.840 55.000 0.00 0.00 0.00 3.56
2834 6268 3.012518 GGATGTGGATTTGACTCTGTGG 58.987 50.000 0.00 0.00 0.00 4.17
2837 6271 4.778579 AGATGGATGTGGATTTGACTCTG 58.221 43.478 0.00 0.00 0.00 3.35
2859 6293 2.564947 GCTGTCTCCTTTCTCCTCTGAA 59.435 50.000 0.00 0.00 0.00 3.02
2890 6324 7.823799 GGAGGGAGTAGTATGTACTATGTACTC 59.176 44.444 13.35 13.35 40.55 2.59
2905 6339 2.439883 GCGGACGGAGGGAGTAGT 60.440 66.667 0.00 0.00 0.00 2.73
2906 6340 3.584052 CGCGGACGGAGGGAGTAG 61.584 72.222 0.00 0.00 34.97 2.57
2907 6341 2.898920 ATTCGCGGACGGAGGGAGTA 62.899 60.000 6.13 0.00 40.63 2.59
2919 6353 3.979495 GGTAGATGTACACTTATTCGCGG 59.021 47.826 6.13 0.00 0.00 6.46
2921 6355 7.064253 ACAAAAGGTAGATGTACACTTATTCGC 59.936 37.037 0.00 0.00 0.00 4.70
2922 6356 8.475331 ACAAAAGGTAGATGTACACTTATTCG 57.525 34.615 0.00 0.00 0.00 3.34
2923 6357 8.880750 GGACAAAAGGTAGATGTACACTTATTC 58.119 37.037 0.00 0.00 0.00 1.75
2927 6361 6.435292 AGGACAAAAGGTAGATGTACACTT 57.565 37.500 0.00 0.00 30.01 3.16
2928 6362 7.310485 CCTTAGGACAAAAGGTAGATGTACACT 60.310 40.741 0.00 0.13 38.98 3.55
2929 6363 6.817140 CCTTAGGACAAAAGGTAGATGTACAC 59.183 42.308 0.00 0.00 38.98 2.90
2930 6364 6.575649 GCCTTAGGACAAAAGGTAGATGTACA 60.576 42.308 0.69 0.00 44.56 2.90
2931 6365 5.816258 GCCTTAGGACAAAAGGTAGATGTAC 59.184 44.000 0.69 0.00 44.56 2.90
2932 6366 5.486063 TGCCTTAGGACAAAAGGTAGATGTA 59.514 40.000 0.69 0.00 44.56 2.29
2933 6367 4.288626 TGCCTTAGGACAAAAGGTAGATGT 59.711 41.667 0.69 0.00 44.56 3.06
2934 6368 4.843728 TGCCTTAGGACAAAAGGTAGATG 58.156 43.478 0.69 0.00 44.56 2.90
2935 6369 5.514500 TTGCCTTAGGACAAAAGGTAGAT 57.486 39.130 0.69 0.00 44.56 1.98
2936 6370 4.986054 TTGCCTTAGGACAAAAGGTAGA 57.014 40.909 0.69 0.00 44.56 2.59
2938 6372 5.056553 ACTTTGCCTTAGGACAAAAGGTA 57.943 39.130 18.83 1.23 44.56 3.08
2939 6373 3.910989 ACTTTGCCTTAGGACAAAAGGT 58.089 40.909 18.83 12.92 44.56 3.50
2940 6374 4.937201 AACTTTGCCTTAGGACAAAAGG 57.063 40.909 18.83 12.49 45.36 3.11
2944 6378 9.674068 AATTTTAAAAACTTTGCCTTAGGACAA 57.326 25.926 0.69 3.08 0.00 3.18
2945 6379 9.674068 AAATTTTAAAAACTTTGCCTTAGGACA 57.326 25.926 0.69 0.00 0.00 4.02
2994 6428 8.985315 ACCAATTTGATGTCATATATGTCACT 57.015 30.769 13.74 5.12 0.00 3.41
3027 6461 6.674066 TGGATCCGTTTTGAAATGTACTTTC 58.326 36.000 7.39 9.52 43.05 2.62
3029 6463 5.768164 ACTGGATCCGTTTTGAAATGTACTT 59.232 36.000 7.39 0.00 0.00 2.24
3034 6468 4.764679 TCACTGGATCCGTTTTGAAATG 57.235 40.909 7.39 0.00 0.00 2.32
3036 6470 5.556915 AGTATCACTGGATCCGTTTTGAAA 58.443 37.500 7.39 0.00 34.89 2.69
3037 6471 5.160607 AGTATCACTGGATCCGTTTTGAA 57.839 39.130 7.39 0.00 34.89 2.69
3038 6472 4.819105 AGTATCACTGGATCCGTTTTGA 57.181 40.909 7.39 7.04 34.89 2.69
3039 6473 7.553881 AATTAGTATCACTGGATCCGTTTTG 57.446 36.000 7.39 1.31 34.89 2.44
3040 6474 9.326413 CTAAATTAGTATCACTGGATCCGTTTT 57.674 33.333 7.39 5.83 34.89 2.43
3042 6476 7.926555 CACTAAATTAGTATCACTGGATCCGTT 59.073 37.037 7.39 0.00 37.23 4.44
3043 6477 7.069578 ACACTAAATTAGTATCACTGGATCCGT 59.930 37.037 7.39 5.31 37.23 4.69
3044 6478 7.434492 ACACTAAATTAGTATCACTGGATCCG 58.566 38.462 7.39 4.62 37.23 4.18
3046 6480 9.988815 ATGACACTAAATTAGTATCACTGGATC 57.011 33.333 15.36 0.39 44.14 3.36
3056 6490 9.613428 AGCAGCATTTATGACACTAAATTAGTA 57.387 29.630 5.23 0.00 37.23 1.82
3057 6491 8.511604 AGCAGCATTTATGACACTAAATTAGT 57.488 30.769 0.00 0.00 40.28 2.24
3059 6493 9.613428 AGTAGCAGCATTTATGACACTAAATTA 57.387 29.630 0.00 0.00 30.68 1.40
3060 6494 8.511604 AGTAGCAGCATTTATGACACTAAATT 57.488 30.769 0.00 0.00 30.68 1.82
3062 6496 7.921786 AAGTAGCAGCATTTATGACACTAAA 57.078 32.000 0.00 0.00 0.00 1.85
3064 6498 7.065803 GGAAAAGTAGCAGCATTTATGACACTA 59.934 37.037 0.00 0.00 0.00 2.74
3065 6499 6.127897 GGAAAAGTAGCAGCATTTATGACACT 60.128 38.462 0.00 0.00 0.00 3.55
3066 6500 6.030228 GGAAAAGTAGCAGCATTTATGACAC 58.970 40.000 0.00 0.00 0.00 3.67
3067 6501 5.945784 AGGAAAAGTAGCAGCATTTATGACA 59.054 36.000 0.00 0.00 0.00 3.58
3068 6502 6.442513 AGGAAAAGTAGCAGCATTTATGAC 57.557 37.500 0.00 0.00 0.00 3.06
3069 6503 8.752005 ATAAGGAAAAGTAGCAGCATTTATGA 57.248 30.769 0.00 0.00 0.00 2.15
3078 6512 8.336801 ACCAACTTTATAAGGAAAAGTAGCAG 57.663 34.615 0.98 0.00 44.35 4.24
3079 6513 7.940137 TGACCAACTTTATAAGGAAAAGTAGCA 59.060 33.333 0.98 0.00 44.35 3.49
3117 6551 9.945904 ACTTCTACCTTTTATCCTAAGTCAAAG 57.054 33.333 0.00 0.00 0.00 2.77
3120 6554 9.537852 TGTACTTCTACCTTTTATCCTAAGTCA 57.462 33.333 0.00 0.00 0.00 3.41
3121 6555 9.800433 GTGTACTTCTACCTTTTATCCTAAGTC 57.200 37.037 0.00 0.00 0.00 3.01
3129 6563 9.310716 GCGAATAAGTGTACTTCTACCTTTTAT 57.689 33.333 0.00 0.00 37.40 1.40
3130 6564 7.485913 CGCGAATAAGTGTACTTCTACCTTTTA 59.514 37.037 0.00 0.00 37.40 1.52
3132 6566 5.803967 CGCGAATAAGTGTACTTCTACCTTT 59.196 40.000 0.00 0.00 37.40 3.11
3136 6570 4.732442 GTCCGCGAATAAGTGTACTTCTAC 59.268 45.833 8.23 0.00 37.40 2.59
3137 6571 4.494690 CGTCCGCGAATAAGTGTACTTCTA 60.495 45.833 8.23 0.00 41.33 2.10
3138 6572 3.730061 CGTCCGCGAATAAGTGTACTTCT 60.730 47.826 8.23 0.00 41.33 2.85
3139 6573 2.529090 CGTCCGCGAATAAGTGTACTTC 59.471 50.000 8.23 0.00 41.33 3.01
3140 6574 2.523015 CGTCCGCGAATAAGTGTACTT 58.477 47.619 8.23 2.51 41.33 2.24
3142 6576 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
3143 6577 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
3144 6578 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
3145 6579 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
3146 6580 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
3147 6581 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
3148 6582 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
3149 6583 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
3151 6585 3.626996 TACTCCCTCCGTCCGCGAA 62.627 63.158 8.23 0.00 41.33 4.70
3152 6586 4.100084 TACTCCCTCCGTCCGCGA 62.100 66.667 8.23 0.00 41.33 5.87
3153 6587 3.885521 GTACTCCCTCCGTCCGCG 61.886 72.222 0.00 0.00 37.95 6.46
3155 6589 1.525535 ATCGTACTCCCTCCGTCCG 60.526 63.158 0.00 0.00 0.00 4.79
3157 6591 1.959042 TACATCGTACTCCCTCCGTC 58.041 55.000 0.00 0.00 0.00 4.79
3158 6592 2.158711 TGATACATCGTACTCCCTCCGT 60.159 50.000 0.00 0.00 0.00 4.69
3159 6593 2.225963 GTGATACATCGTACTCCCTCCG 59.774 54.545 0.00 0.00 0.00 4.63
3161 6595 4.752661 GAGTGATACATCGTACTCCCTC 57.247 50.000 0.00 0.00 34.84 4.30
3165 6599 6.380095 AGAAAGGAGTGATACATCGTACTC 57.620 41.667 0.00 0.00 38.98 2.59
3167 6601 5.507650 GGGAGAAAGGAGTGATACATCGTAC 60.508 48.000 0.00 0.00 0.00 3.67
3168 6602 4.583489 GGGAGAAAGGAGTGATACATCGTA 59.417 45.833 0.00 0.00 0.00 3.43
3169 6603 3.385111 GGGAGAAAGGAGTGATACATCGT 59.615 47.826 0.00 0.00 0.00 3.73
3251 7203 3.111853 ACAGTTGATGTCATCGTGTGT 57.888 42.857 12.23 9.92 37.75 3.72
3293 7245 6.558488 ATTGAAGAAAGTGCTAGGAGATCT 57.442 37.500 0.00 0.00 0.00 2.75
3323 7275 7.970061 ACAAATTCATCATGTCCTTTGATTACG 59.030 33.333 12.93 0.00 31.50 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.