Multiple sequence alignment - TraesCS1A01G333800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G333800 chr1A 100.000 3566 0 0 1 3566 521628027 521631592 0.000000e+00 6586
1 TraesCS1A01G333800 chr1D 95.124 2625 101 12 932 3550 426586804 426589407 0.000000e+00 4113
2 TraesCS1A01G333800 chr1D 87.156 545 56 7 1 537 426584754 426585292 1.090000e-169 606
3 TraesCS1A01G333800 chr1D 88.442 398 37 8 527 922 426586356 426586746 4.170000e-129 472
4 TraesCS1A01G333800 chr1B 93.311 2661 116 25 932 3566 576205352 576207976 0.000000e+00 3871
5 TraesCS1A01G333800 chr1B 90.076 927 76 12 1 922 576204367 576205282 0.000000e+00 1188
6 TraesCS1A01G333800 chr3D 80.799 1401 237 26 1139 2523 409021986 409020602 0.000000e+00 1068
7 TraesCS1A01G333800 chr3D 82.100 743 124 8 1124 1861 95246495 95245757 8.400000e-176 627
8 TraesCS1A01G333800 chr3B 80.772 1399 241 23 1139 2523 534965453 534964069 0.000000e+00 1068
9 TraesCS1A01G333800 chr3B 81.452 744 127 10 1124 1861 146183124 146182386 1.830000e-167 599
10 TraesCS1A01G333800 chr3A 79.282 1588 277 47 964 2523 542202607 542204170 0.000000e+00 1062
11 TraesCS1A01G333800 chr3A 82.503 743 121 8 1124 1861 113342386 113341648 0.000000e+00 643
12 TraesCS1A01G333800 chr3A 80.827 266 46 5 1480 1742 686863633 686863896 1.680000e-48 204
13 TraesCS1A01G333800 chr5D 77.344 640 119 19 1112 1732 457663877 457664509 4.380000e-94 355
14 TraesCS1A01G333800 chr5D 79.705 271 48 7 2 268 517455799 517455532 4.700000e-44 189
15 TraesCS1A01G333800 chr6D 79.926 269 52 2 2 269 80150582 80150849 2.810000e-46 196
16 TraesCS1A01G333800 chr2D 79.927 274 44 10 1 270 432874708 432874442 1.310000e-44 191
17 TraesCS1A01G333800 chr7B 81.435 237 37 5 33 266 443335909 443336141 1.690000e-43 187
18 TraesCS1A01G333800 chr2A 80.184 217 41 2 29 243 15524719 15524935 1.020000e-35 161
19 TraesCS1A01G333800 chr4A 79.221 231 44 4 40 268 642640629 642640401 1.330000e-34 158
20 TraesCS1A01G333800 chr5B 79.399 233 35 11 41 267 592297435 592297660 6.170000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G333800 chr1A 521628027 521631592 3565 False 6586.000000 6586 100.000000 1 3566 1 chr1A.!!$F1 3565
1 TraesCS1A01G333800 chr1D 426584754 426589407 4653 False 1730.333333 4113 90.240667 1 3550 3 chr1D.!!$F1 3549
2 TraesCS1A01G333800 chr1B 576204367 576207976 3609 False 2529.500000 3871 91.693500 1 3566 2 chr1B.!!$F1 3565
3 TraesCS1A01G333800 chr3D 409020602 409021986 1384 True 1068.000000 1068 80.799000 1139 2523 1 chr3D.!!$R2 1384
4 TraesCS1A01G333800 chr3D 95245757 95246495 738 True 627.000000 627 82.100000 1124 1861 1 chr3D.!!$R1 737
5 TraesCS1A01G333800 chr3B 534964069 534965453 1384 True 1068.000000 1068 80.772000 1139 2523 1 chr3B.!!$R2 1384
6 TraesCS1A01G333800 chr3B 146182386 146183124 738 True 599.000000 599 81.452000 1124 1861 1 chr3B.!!$R1 737
7 TraesCS1A01G333800 chr3A 542202607 542204170 1563 False 1062.000000 1062 79.282000 964 2523 1 chr3A.!!$F1 1559
8 TraesCS1A01G333800 chr3A 113341648 113342386 738 True 643.000000 643 82.503000 1124 1861 1 chr3A.!!$R1 737
9 TraesCS1A01G333800 chr5D 457663877 457664509 632 False 355.000000 355 77.344000 1112 1732 1 chr5D.!!$F1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 2016 0.333312 ACCCCCAACCGCATCAAATA 59.667 50.0 0.0 0.0 0.0 1.40 F
929 2017 1.032014 CCCCCAACCGCATCAAATAG 58.968 55.0 0.0 0.0 0.0 1.73 F
1992 3163 0.324275 AGAGTGAGGAGCTGGGTCTC 60.324 60.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 2920 0.994247 ACATGGCCATGAGGTTCTGA 59.006 50.0 44.72 2.57 41.20 3.27 R
2528 3717 1.327690 TACATTTCGAGCCGAGCCCT 61.328 55.0 0.00 0.00 37.14 5.19 R
3008 4210 0.251073 GCCAATGGCCATTCTGCTTT 59.749 50.0 29.64 10.35 44.06 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.907837 CGACGATGCTAGACACAACG 59.092 55.000 0.00 0.00 0.00 4.10
33 34 4.047125 CAACGCTGGGATGGGGGT 62.047 66.667 0.00 0.00 0.00 4.95
44 52 2.100525 GATGGGGGTTTGGTGGGGAA 62.101 60.000 0.00 0.00 0.00 3.97
124 132 6.961360 AACCCTAAGAAAACTCAAAGGAAG 57.039 37.500 0.00 0.00 0.00 3.46
127 135 6.943146 ACCCTAAGAAAACTCAAAGGAAGATC 59.057 38.462 0.00 0.00 0.00 2.75
144 153 5.338789 GGAAGATCTAAAAACTGAGCCCTCT 60.339 44.000 0.00 0.00 0.00 3.69
147 156 2.897969 TCTAAAAACTGAGCCCTCTCGT 59.102 45.455 0.00 0.00 42.26 4.18
148 157 2.171341 AAAAACTGAGCCCTCTCGTC 57.829 50.000 0.00 0.00 42.26 4.20
159 168 2.282958 TCTCGTCGGCAAGGGTCT 60.283 61.111 0.00 0.00 0.00 3.85
166 175 0.984230 TCGGCAAGGGTCTGATTCTT 59.016 50.000 0.00 0.00 0.00 2.52
173 182 1.447838 GGTCTGATTCTTCGCGCCA 60.448 57.895 0.00 0.00 0.00 5.69
239 248 1.734465 CATGCGGAAGACAGAGAAACC 59.266 52.381 0.00 0.00 0.00 3.27
242 251 1.549170 GCGGAAGACAGAGAAACCCTA 59.451 52.381 0.00 0.00 0.00 3.53
255 264 5.061721 AGAAACCCTAGGCTTTTCTTTGA 57.938 39.130 22.31 0.00 0.00 2.69
269 278 1.198713 CTTTGAGGAGGAGGCAGCTA 58.801 55.000 0.00 0.00 0.00 3.32
270 279 1.138661 CTTTGAGGAGGAGGCAGCTAG 59.861 57.143 0.00 0.00 0.00 3.42
271 280 0.689080 TTGAGGAGGAGGCAGCTAGG 60.689 60.000 0.00 0.00 0.00 3.02
272 281 2.445654 AGGAGGAGGCAGCTAGGC 60.446 66.667 0.00 0.00 44.61 3.93
393 404 4.598036 ATGATCCTGTTCCATGGAGTTT 57.402 40.909 15.53 0.00 35.63 2.66
475 487 7.440523 AACAAAAGTATTTCTCAAGCTCGAT 57.559 32.000 0.00 0.00 37.28 3.59
486 498 1.329906 CAAGCTCGATGTGCCAAGATC 59.670 52.381 0.00 0.00 0.00 2.75
523 535 4.216687 CCTGTGAAATTTTACCACCGCTAA 59.783 41.667 10.29 0.00 0.00 3.09
551 1637 8.845942 TCATTGAAATTTTAGCATCTTCGATG 57.154 30.769 0.00 0.00 38.46 3.84
553 1639 6.757897 TGAAATTTTAGCATCTTCGATGGT 57.242 33.333 12.43 12.43 0.00 3.55
559 1645 3.550437 AGCATCTTCGATGGTTAGCTT 57.450 42.857 0.00 0.00 0.00 3.74
562 1648 2.024176 TCTTCGATGGTTAGCTTGGC 57.976 50.000 0.00 0.00 0.00 4.52
572 1658 4.465886 TGGTTAGCTTGGCAAAAAGACTA 58.534 39.130 0.00 0.00 0.00 2.59
576 1662 6.071896 GGTTAGCTTGGCAAAAAGACTAATCT 60.072 38.462 0.00 0.00 36.42 2.40
607 1695 4.690184 TTGAGAGTTACGTATTCGAGCA 57.310 40.909 0.00 0.00 40.62 4.26
608 1696 4.274421 TGAGAGTTACGTATTCGAGCAG 57.726 45.455 0.00 0.00 40.62 4.24
680 1768 9.520204 CTTGAATTTATATGTCACCCAATTGTC 57.480 33.333 4.43 0.00 0.00 3.18
716 1804 3.956744 ACCAGCAGAACCCTAGAAAATC 58.043 45.455 0.00 0.00 0.00 2.17
729 1817 6.437477 ACCCTAGAAAATCCCAGAAATTTCAC 59.563 38.462 19.99 0.00 34.91 3.18
762 1850 4.013050 GTCTGAAAGGGAAGGAATTGAGG 58.987 47.826 0.00 0.00 0.00 3.86
763 1851 3.916349 TCTGAAAGGGAAGGAATTGAGGA 59.084 43.478 0.00 0.00 0.00 3.71
792 1880 3.690745 GCATGGAGCTGTTGCCTT 58.309 55.556 0.00 0.00 41.15 4.35
827 1915 2.226437 AGTTGGCATTGAGCTGTAAACG 59.774 45.455 0.00 0.00 44.79 3.60
904 1992 3.790437 CCGGAGCCTGCCAGACAT 61.790 66.667 0.00 0.00 0.00 3.06
924 2012 4.358841 CCACCCCCAACCGCATCA 62.359 66.667 0.00 0.00 0.00 3.07
927 2015 1.078347 ACCCCCAACCGCATCAAAT 59.922 52.632 0.00 0.00 0.00 2.32
928 2016 0.333312 ACCCCCAACCGCATCAAATA 59.667 50.000 0.00 0.00 0.00 1.40
929 2017 1.032014 CCCCCAACCGCATCAAATAG 58.968 55.000 0.00 0.00 0.00 1.73
930 2018 1.032014 CCCCAACCGCATCAAATAGG 58.968 55.000 0.00 0.00 0.00 2.57
1704 2875 1.300931 CGACATATGGTCCTGCGGG 60.301 63.158 4.71 4.71 43.95 6.13
1749 2920 1.777272 GGCTACCTCCCTTTCCATGAT 59.223 52.381 0.00 0.00 0.00 2.45
1842 3013 0.955428 TCACCAGCCTGTTGAATCGC 60.955 55.000 0.00 0.00 0.00 4.58
1923 3094 0.991920 TTCAGAAGGGATTTCGGCCT 59.008 50.000 0.00 0.00 40.86 5.19
1941 3112 3.265791 GCCTGTCAGGTTCTATGTTGAG 58.734 50.000 20.24 0.00 37.80 3.02
1989 3160 0.902516 GTGAGAGTGAGGAGCTGGGT 60.903 60.000 0.00 0.00 0.00 4.51
1992 3163 0.324275 AGAGTGAGGAGCTGGGTCTC 60.324 60.000 0.00 0.00 0.00 3.36
2451 3640 1.734655 TGGAGGTGAAGAAGAAGGCT 58.265 50.000 0.00 0.00 0.00 4.58
2528 3717 1.227527 CTCTCGTGCACCACCAACA 60.228 57.895 12.15 0.00 0.00 3.33
2559 3748 4.441415 GCTCGAAATGTACCTTCTGATACG 59.559 45.833 0.00 0.00 0.00 3.06
2599 3788 4.940654 AGCTCTCTTGCTTGAAAGGAATAC 59.059 41.667 0.00 0.00 40.93 1.89
2792 3985 9.435570 ACATATATACAGTCTAAAGGGAGTTGT 57.564 33.333 0.00 0.00 0.00 3.32
2796 3989 3.071167 ACAGTCTAAAGGGAGTTGTGGAC 59.929 47.826 0.00 0.00 0.00 4.02
2806 3999 2.484889 GAGTTGTGGACTTCGCTTTCT 58.515 47.619 0.00 0.00 39.19 2.52
2808 4001 2.103263 AGTTGTGGACTTCGCTTTCTCT 59.897 45.455 0.00 0.00 33.92 3.10
2843 4036 5.104776 TGTTTATCCTAGCTCAAGTGCTCAT 60.105 40.000 0.00 0.00 42.97 2.90
2973 4168 8.744011 CGAGTATTATAGCTGTTGTGTAACTTC 58.256 37.037 0.00 0.00 38.04 3.01
3008 4210 7.760794 GCTTTCATCAAATAACCATCACATCAA 59.239 33.333 0.00 0.00 0.00 2.57
3069 4271 7.497595 TCAGCGATATACTACCATTCTGTTTT 58.502 34.615 0.00 0.00 0.00 2.43
3098 4310 9.617975 CAAAACAAAATAAGATCTGAGGAAGTC 57.382 33.333 0.00 0.00 0.00 3.01
3115 4327 5.010922 AGGAAGTCATGCTCTACTGATGATC 59.989 44.000 0.00 0.00 0.00 2.92
3294 4506 4.796038 ATTCAATTCCTGTTCCTGCAAG 57.204 40.909 0.00 0.00 0.00 4.01
3317 4529 9.935682 CAAGGTCACAAACATATGTTACATATC 57.064 33.333 21.07 8.45 37.25 1.63
3348 4560 3.575256 TCAGAAAGAGGTGCGGTAAGTTA 59.425 43.478 0.00 0.00 0.00 2.24
3353 4565 1.730612 GAGGTGCGGTAAGTTACTTGC 59.269 52.381 18.10 18.10 0.00 4.01
3419 4631 7.315890 CAGAAAAAGGAAAGACAAACTGAAGT 58.684 34.615 0.00 0.00 0.00 3.01
3427 4639 6.404293 GGAAAGACAAACTGAAGTTTAGTGCA 60.404 38.462 8.06 0.00 45.54 4.57
3437 4649 8.045176 ACTGAAGTTTAGTGCATATCCTTTTC 57.955 34.615 0.00 0.00 0.00 2.29
3441 4653 5.065218 AGTTTAGTGCATATCCTTTTCTGCG 59.935 40.000 0.00 0.00 37.44 5.18
3506 4719 6.128363 CCTGTATAGTCGTGTATGCGAGAATA 60.128 42.308 0.00 0.00 41.85 1.75
3520 4733 6.132791 TGCGAGAATAGGTAAGACACTTAG 57.867 41.667 0.00 0.00 0.00 2.18
3536 4751 5.994250 ACACTTAGCATGTACCATGATTCT 58.006 37.500 8.34 0.00 0.00 2.40
3556 4772 2.036475 CTGGAGTTGGATGGGACGATAG 59.964 54.545 0.00 0.00 46.19 2.08
3558 4774 1.344763 GAGTTGGATGGGACGATAGGG 59.655 57.143 0.00 0.00 43.77 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.047125 CCCCCATCCCAGCGTTGT 62.047 66.667 0.00 0.00 0.00 3.32
20 21 2.364186 CCAAACCCCCATCCCAGC 60.364 66.667 0.00 0.00 0.00 4.85
33 34 3.904965 GGAATAAGGTTTTCCCCACCAAA 59.095 43.478 0.00 0.00 41.86 3.28
44 52 6.069731 AGCTCTCTGAAGATGGAATAAGGTTT 60.070 38.462 0.00 0.00 0.00 3.27
71 79 5.654650 CCTACTCAGGAAGACAAGACTATGT 59.345 44.000 0.00 0.00 45.91 2.29
97 105 6.096282 TCCTTTGAGTTTTCTTAGGGTTTGTG 59.904 38.462 0.00 0.00 0.00 3.33
124 132 4.116238 CGAGAGGGCTCAGTTTTTAGATC 58.884 47.826 0.00 0.00 41.36 2.75
127 135 3.254892 GACGAGAGGGCTCAGTTTTTAG 58.745 50.000 0.00 0.00 41.36 1.85
144 153 1.541310 AATCAGACCCTTGCCGACGA 61.541 55.000 0.00 0.00 0.00 4.20
147 156 0.984230 AAGAATCAGACCCTTGCCGA 59.016 50.000 0.00 0.00 0.00 5.54
148 157 1.373570 GAAGAATCAGACCCTTGCCG 58.626 55.000 0.00 0.00 0.00 5.69
159 168 1.078497 ATGGTGGCGCGAAGAATCA 60.078 52.632 12.10 0.00 0.00 2.57
194 203 3.745803 GCCGGTCCGTCTCGTCTT 61.746 66.667 11.06 0.00 0.00 3.01
212 221 2.117156 GTCTTCCGCATGCATGGCT 61.117 57.895 27.34 0.00 0.00 4.75
217 226 0.321346 TTCTCTGTCTTCCGCATGCA 59.679 50.000 19.57 0.00 0.00 3.96
220 229 1.339151 GGGTTTCTCTGTCTTCCGCAT 60.339 52.381 0.00 0.00 0.00 4.73
239 248 3.264450 TCCTCCTCAAAGAAAAGCCTAGG 59.736 47.826 3.67 3.67 0.00 3.02
242 251 2.040947 CCTCCTCCTCAAAGAAAAGCCT 59.959 50.000 0.00 0.00 0.00 4.58
255 264 2.445654 GCCTAGCTGCCTCCTCCT 60.446 66.667 0.00 0.00 0.00 3.69
269 278 0.532573 CATGTGTCTCACGTAGGCCT 59.467 55.000 11.78 11.78 37.14 5.19
270 279 0.246635 ACATGTGTCTCACGTAGGCC 59.753 55.000 0.00 0.00 37.14 5.19
271 280 2.933495 TACATGTGTCTCACGTAGGC 57.067 50.000 9.11 0.00 37.14 3.93
272 281 4.371855 ACATACATGTGTCTCACGTAGG 57.628 45.455 9.11 0.00 40.03 3.18
273 282 5.861787 TCAAACATACATGTGTCTCACGTAG 59.138 40.000 9.11 0.00 41.61 3.51
274 283 5.774630 TCAAACATACATGTGTCTCACGTA 58.225 37.500 9.11 0.00 41.61 3.57
275 284 4.627058 TCAAACATACATGTGTCTCACGT 58.373 39.130 9.11 0.00 41.61 4.49
372 383 4.275810 CAAACTCCATGGAACAGGATCAT 58.724 43.478 17.00 0.00 46.40 2.45
393 404 3.484806 ATTCCCCCGCCATACGCA 61.485 61.111 0.00 0.00 41.76 5.24
408 420 1.197812 GGCTCCCCAGAAAATGCATT 58.802 50.000 5.99 5.99 0.00 3.56
451 463 6.861065 TCGAGCTTGAGAAATACTTTTGTT 57.139 33.333 0.00 0.00 0.00 2.83
458 470 3.001736 GGCACATCGAGCTTGAGAAATAC 59.998 47.826 10.06 0.00 0.00 1.89
475 487 3.006430 TCAGAACTAACGATCTTGGCACA 59.994 43.478 0.00 0.00 0.00 4.57
486 498 6.727824 ATTTCACAGGAATCAGAACTAACG 57.272 37.500 0.00 0.00 31.93 3.18
513 525 5.659440 ATTTCAATGATTTTAGCGGTGGT 57.341 34.783 0.00 0.00 0.00 4.16
523 535 9.859427 TCGAAGATGCTAAAATTTCAATGATTT 57.141 25.926 0.00 0.00 0.00 2.17
551 1637 5.447624 TTAGTCTTTTTGCCAAGCTAACC 57.552 39.130 0.00 0.00 0.00 2.85
553 1639 7.524717 AAGATTAGTCTTTTTGCCAAGCTAA 57.475 32.000 0.00 0.00 41.92 3.09
597 1685 1.067142 TGGTGGTGTCTGCTCGAATAC 60.067 52.381 0.00 0.00 0.00 1.89
607 1695 3.631250 AGACAAAAATGTGGTGGTGTCT 58.369 40.909 0.00 0.00 40.56 3.41
608 1696 5.508200 TTAGACAAAAATGTGGTGGTGTC 57.492 39.130 0.00 0.00 36.48 3.67
680 1768 0.831711 CTGGTTTGGGTGGGGGAAAG 60.832 60.000 0.00 0.00 0.00 2.62
716 1804 2.558359 GGAGTGTGGTGAAATTTCTGGG 59.442 50.000 18.64 0.00 0.00 4.45
729 1817 1.337260 CCTTTCAGACTCGGAGTGTGG 60.337 57.143 28.40 16.13 39.67 4.17
762 1850 0.036732 TCCATGCCAGTGTGTTCCTC 59.963 55.000 0.00 0.00 0.00 3.71
763 1851 0.037303 CTCCATGCCAGTGTGTTCCT 59.963 55.000 0.00 0.00 0.00 3.36
792 1880 6.998074 TCAATGCCAACTTCTTTTTCTAGAGA 59.002 34.615 0.00 0.00 0.00 3.10
827 1915 2.715737 TTAAATGGTTTCTGCCGTGC 57.284 45.000 0.00 0.00 0.00 5.34
1704 2875 1.475403 TGAGGACGAAGAGGATGACC 58.525 55.000 0.00 0.00 0.00 4.02
1749 2920 0.994247 ACATGGCCATGAGGTTCTGA 59.006 50.000 44.72 2.57 41.20 3.27
1842 3013 1.374252 CGGGTTGGTGTCGAGAAGG 60.374 63.158 0.00 0.00 0.00 3.46
1923 3094 3.056821 CGTCCTCAACATAGAACCTGACA 60.057 47.826 0.00 0.00 0.00 3.58
1941 3112 3.791539 CTGTGCAGCTGATCGTCC 58.208 61.111 20.43 0.00 0.00 4.79
1992 3163 2.101770 GGCTCGGTAGGTTCGACG 59.898 66.667 0.00 0.00 32.86 5.12
2451 3640 3.344535 TCATACTCTGCCTTATCCCCA 57.655 47.619 0.00 0.00 0.00 4.96
2528 3717 1.327690 TACATTTCGAGCCGAGCCCT 61.328 55.000 0.00 0.00 37.14 5.19
2559 3748 6.124340 AGAGAGCTACCTTTAGAACTACTCC 58.876 44.000 0.00 0.00 0.00 3.85
2673 3865 7.392418 ACTAACACAAAGGGACTAAGGAATAC 58.608 38.462 0.00 0.00 38.49 1.89
2771 3964 6.154021 GTCCACAACTCCCTTTAGACTGTATA 59.846 42.308 0.00 0.00 0.00 1.47
2792 3985 4.537135 AATGTAGAGAAAGCGAAGTCCA 57.463 40.909 0.00 0.00 0.00 4.02
2909 4102 6.148150 TCACGAAAGTTCCAATGGTACATTAC 59.852 38.462 11.58 0.59 44.73 1.89
2910 4103 6.231951 TCACGAAAGTTCCAATGGTACATTA 58.768 36.000 11.58 0.00 44.73 1.90
2973 4168 8.896744 TGGTTATTTGATGAAAGCTGAGATAAG 58.103 33.333 0.00 0.00 0.00 1.73
3008 4210 0.251073 GCCAATGGCCATTCTGCTTT 59.749 50.000 29.64 10.35 44.06 3.51
3098 4310 5.045872 TGAAACGATCATCAGTAGAGCATG 58.954 41.667 0.00 0.00 31.50 4.06
3115 4327 4.031028 CAGAGCTTTGTTCAACTGAAACG 58.969 43.478 0.00 0.00 35.58 3.60
3294 4506 9.109393 ACTGATATGTAACATATGTTTGTGACC 57.891 33.333 25.31 12.06 39.31 4.02
3317 4529 4.143030 CGCACCTCTTTCTGAATAACACTG 60.143 45.833 0.00 0.00 0.00 3.66
3376 4588 2.176798 TCTGGACCAACAGGTTTGGAAT 59.823 45.455 10.02 0.00 42.06 3.01
3419 4631 4.941263 ACGCAGAAAAGGATATGCACTAAA 59.059 37.500 0.00 0.00 38.60 1.85
3427 4639 6.324819 CAATGTTTGACGCAGAAAAGGATAT 58.675 36.000 0.00 0.00 0.00 1.63
3437 4649 3.051327 TCATTTGCAATGTTTGACGCAG 58.949 40.909 0.00 0.00 35.47 5.18
3441 4653 5.403466 GTCCTCTTCATTTGCAATGTTTGAC 59.597 40.000 0.00 0.00 0.00 3.18
3506 4719 4.775780 TGGTACATGCTAAGTGTCTTACCT 59.224 41.667 0.00 0.00 30.58 3.08
3536 4751 2.039418 CTATCGTCCCATCCAACTCCA 58.961 52.381 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.