Multiple sequence alignment - TraesCS1A01G333200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G333200 chr1A 100.000 4816 0 0 1 4816 521288175 521292990 0.000000e+00 8894.0
1 TraesCS1A01G333200 chr1B 91.621 4153 196 60 760 4816 575860871 575864967 0.000000e+00 5602.0
2 TraesCS1A01G333200 chr1B 89.205 176 13 4 535 710 575841450 575841619 1.050000e-51 215.0
3 TraesCS1A01G333200 chr1B 100.000 34 0 0 4360 4393 442222780 442222747 4.020000e-06 63.9
4 TraesCS1A01G333200 chr1B 100.000 34 0 0 4360 4393 442237433 442237400 4.020000e-06 63.9
5 TraesCS1A01G333200 chr1B 100.000 34 0 0 4360 4393 442245281 442245248 4.020000e-06 63.9
6 TraesCS1A01G333200 chr1D 91.891 2121 105 26 2752 4816 426176904 426179013 0.000000e+00 2902.0
7 TraesCS1A01G333200 chr1D 89.357 1353 84 21 725 2038 426174602 426175933 0.000000e+00 1646.0
8 TraesCS1A01G333200 chr1D 91.364 799 54 6 2042 2834 426175979 426176768 0.000000e+00 1079.0
9 TraesCS1A01G333200 chr1D 89.152 719 48 14 1 718 426173419 426174108 0.000000e+00 869.0
10 TraesCS1A01G333200 chr1D 80.903 487 83 8 21 503 377201255 377200775 4.550000e-100 375.0
11 TraesCS1A01G333200 chr7D 82.449 490 81 5 18 503 199356147 199355659 1.600000e-114 424.0
12 TraesCS1A01G333200 chr7D 74.884 215 32 18 4360 4556 431246457 431246667 1.440000e-10 78.7
13 TraesCS1A01G333200 chr7D 84.906 53 7 1 4362 4413 635522944 635522996 9.000000e-03 52.8
14 TraesCS1A01G333200 chr7B 81.657 507 86 7 1 503 221894656 221894153 9.640000e-112 414.0
15 TraesCS1A01G333200 chr7B 81.299 508 86 8 1 502 163488888 163488384 2.090000e-108 403.0
16 TraesCS1A01G333200 chr7B 78.389 509 101 8 5 508 123730934 123731438 6.010000e-84 322.0
17 TraesCS1A01G333200 chr7A 81.423 506 88 6 1 502 209156065 209155562 4.490000e-110 409.0
18 TraesCS1A01G333200 chr7A 80.769 468 81 8 41 503 261825460 261824997 1.650000e-94 357.0
19 TraesCS1A01G333200 chr5A 81.573 483 84 5 7 486 42115539 42115059 1.260000e-105 394.0
20 TraesCS1A01G333200 chrUn 100.000 34 0 0 4360 4393 465949244 465949277 4.020000e-06 63.9
21 TraesCS1A01G333200 chr6D 97.059 34 1 0 4360 4393 327022416 327022383 1.870000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G333200 chr1A 521288175 521292990 4815 False 8894 8894 100.000 1 4816 1 chr1A.!!$F1 4815
1 TraesCS1A01G333200 chr1B 575860871 575864967 4096 False 5602 5602 91.621 760 4816 1 chr1B.!!$F2 4056
2 TraesCS1A01G333200 chr1D 426173419 426179013 5594 False 1624 2902 90.441 1 4816 4 chr1D.!!$F1 4815
3 TraesCS1A01G333200 chr7B 221894153 221894656 503 True 414 414 81.657 1 503 1 chr7B.!!$R2 502
4 TraesCS1A01G333200 chr7B 163488384 163488888 504 True 403 403 81.299 1 502 1 chr7B.!!$R1 501
5 TraesCS1A01G333200 chr7B 123730934 123731438 504 False 322 322 78.389 5 508 1 chr7B.!!$F1 503
6 TraesCS1A01G333200 chr7A 209155562 209156065 503 True 409 409 81.423 1 502 1 chr7A.!!$R1 501


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 563 0.102120 CGAGCTGGTCCAGATCAGTC 59.898 60.000 31.18 14.27 45.80 3.51 F
557 564 0.463620 GAGCTGGTCCAGATCAGTCC 59.536 60.000 28.45 4.69 44.99 3.85 F
1602 2139 1.013596 TGACGCTGAAGGTGTGTTTG 58.986 50.000 0.00 0.00 38.95 2.93 F
3032 3877 1.524621 CCGTATTGGCAGCCTCCAG 60.525 63.158 14.15 0.18 37.44 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 1886 0.034896 ATTGAGCTCGGTTTGGACGT 59.965 50.000 9.64 0.00 0.0 4.34 R
1865 2429 0.803740 GCAAGAAAGCTGCAGAGGAG 59.196 55.000 20.43 0.58 0.0 3.69 R
3467 4319 0.325933 CTGACCAGACCAATCCTGCA 59.674 55.000 0.00 0.00 0.0 4.41 R
3998 4859 1.885887 CCAAAAGTTGCCGATGAGGAA 59.114 47.619 0.00 0.00 45.0 3.36 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 1.134487 CGCTAACGCATTGGTGGTG 59.866 57.895 0.00 0.00 35.30 4.17
86 90 5.716228 TCTCCAATGCCATATGAAGTTTTGT 59.284 36.000 3.65 0.00 0.00 2.83
143 147 0.832135 GCCCCTCGACCATGGAGATA 60.832 60.000 21.47 0.00 33.27 1.98
168 172 5.535043 AAGTTTTGCTTCTTGTTGCTTTG 57.465 34.783 0.00 0.00 30.06 2.77
220 224 8.471609 TCAATGTTGCAACTTGATAATCATCAT 58.528 29.630 28.61 7.73 40.85 2.45
245 249 6.183360 TGTTGTATAGTCTGGACGCAATATCA 60.183 38.462 0.00 0.00 36.20 2.15
256 261 4.515191 GGACGCAATATCATGTTGTACCAT 59.485 41.667 0.00 0.00 0.00 3.55
278 283 0.322546 GACCGAGGGCAGACCATTTT 60.323 55.000 0.00 0.00 43.89 1.82
279 284 0.988832 ACCGAGGGCAGACCATTTTA 59.011 50.000 0.00 0.00 43.89 1.52
280 285 1.564348 ACCGAGGGCAGACCATTTTAT 59.436 47.619 0.00 0.00 43.89 1.40
281 286 1.949525 CCGAGGGCAGACCATTTTATG 59.050 52.381 0.00 0.00 43.89 1.90
282 287 1.334869 CGAGGGCAGACCATTTTATGC 59.665 52.381 0.00 0.00 43.89 3.14
284 289 3.026694 GAGGGCAGACCATTTTATGCTT 58.973 45.455 0.00 0.00 43.89 3.91
385 392 8.527567 TTTGGAATCAATGAATACGAAAAACC 57.472 30.769 0.00 0.00 32.28 3.27
390 397 8.742554 AATCAATGAATACGAAAAACCTGTTC 57.257 30.769 0.00 0.00 0.00 3.18
460 467 5.825679 TGTACCAGGGATATTTGCATGTTAC 59.174 40.000 0.00 0.00 0.00 2.50
490 497 9.906660 TGGATGAATTGTGTTATTTTCTGTAAC 57.093 29.630 0.00 0.00 33.67 2.50
517 524 0.326264 AGTGTCAGAGTTGGATGGCC 59.674 55.000 0.00 0.00 0.00 5.36
519 526 1.296715 GTCAGAGTTGGATGGCCGT 59.703 57.895 0.00 0.00 36.79 5.68
533 540 4.082523 CCGTCCCCGCATCAGTGT 62.083 66.667 0.00 0.00 0.00 3.55
535 542 2.125106 GTCCCCGCATCAGTGTCC 60.125 66.667 0.00 0.00 0.00 4.02
536 543 3.770040 TCCCCGCATCAGTGTCCG 61.770 66.667 0.00 0.00 0.00 4.79
541 548 3.558411 GCATCAGTGTCCGCGAGC 61.558 66.667 8.23 0.00 0.00 5.03
542 549 2.182791 CATCAGTGTCCGCGAGCT 59.817 61.111 8.23 0.00 0.00 4.09
543 550 2.163390 CATCAGTGTCCGCGAGCTG 61.163 63.158 8.23 10.18 0.00 4.24
544 551 3.362399 ATCAGTGTCCGCGAGCTGG 62.362 63.158 8.23 0.00 0.00 4.85
545 552 4.363990 CAGTGTCCGCGAGCTGGT 62.364 66.667 8.23 0.00 0.00 4.00
546 553 4.057428 AGTGTCCGCGAGCTGGTC 62.057 66.667 8.23 0.00 0.00 4.02
549 556 4.803426 GTCCGCGAGCTGGTCCAG 62.803 72.222 15.15 15.15 34.12 3.86
551 558 3.842923 CCGCGAGCTGGTCCAGAT 61.843 66.667 23.77 17.55 32.44 2.90
552 559 2.279120 CGCGAGCTGGTCCAGATC 60.279 66.667 24.63 24.63 42.60 2.75
553 560 2.895680 GCGAGCTGGTCCAGATCA 59.104 61.111 31.18 0.00 45.80 2.92
554 561 1.227205 GCGAGCTGGTCCAGATCAG 60.227 63.158 31.18 24.40 45.80 2.90
555 562 1.954362 GCGAGCTGGTCCAGATCAGT 61.954 60.000 31.18 7.72 45.80 3.41
556 563 0.102120 CGAGCTGGTCCAGATCAGTC 59.898 60.000 31.18 14.27 45.80 3.51
557 564 0.463620 GAGCTGGTCCAGATCAGTCC 59.536 60.000 28.45 4.69 44.99 3.85
558 565 1.142748 GCTGGTCCAGATCAGTCCG 59.857 63.158 23.77 0.00 41.51 4.79
559 566 1.142748 CTGGTCCAGATCAGTCCGC 59.857 63.158 14.26 0.00 34.90 5.54
560 567 2.105128 GGTCCAGATCAGTCCGCG 59.895 66.667 0.00 0.00 0.00 6.46
561 568 2.105128 GTCCAGATCAGTCCGCGG 59.895 66.667 22.12 22.12 0.00 6.46
562 569 2.044352 TCCAGATCAGTCCGCGGA 60.044 61.111 27.28 27.28 0.00 5.54
563 570 2.105128 CCAGATCAGTCCGCGGAC 59.895 66.667 43.92 43.92 44.86 4.79
593 600 1.496857 TGTCCATTTCAGGGGTCAACA 59.503 47.619 0.00 0.00 0.00 3.33
621 628 4.943705 AGATGCCCTAACATAGTTTGTGTG 59.056 41.667 0.00 0.00 38.99 3.82
628 635 6.727824 CTAACATAGTTTGTGTGAGGAAGG 57.272 41.667 0.00 0.00 38.99 3.46
646 653 5.365314 AGGAAGGAGAAGAACACTATCATCC 59.635 44.000 0.00 0.00 0.00 3.51
648 655 4.537751 AGGAGAAGAACACTATCATCCGA 58.462 43.478 0.00 0.00 0.00 4.55
657 664 3.574396 ACACTATCATCCGATTGATCCGT 59.426 43.478 3.69 1.59 37.51 4.69
660 667 5.119279 CACTATCATCCGATTGATCCGTTTC 59.881 44.000 3.69 0.00 37.51 2.78
718 725 5.993106 TCACATTCACACGTCAAATACAA 57.007 34.783 0.00 0.00 0.00 2.41
720 727 5.525745 TCACATTCACACGTCAAATACAAGT 59.474 36.000 0.00 0.00 0.00 3.16
721 728 5.845953 CACATTCACACGTCAAATACAAGTC 59.154 40.000 0.00 0.00 0.00 3.01
722 729 5.758296 ACATTCACACGTCAAATACAAGTCT 59.242 36.000 0.00 0.00 0.00 3.24
752 1246 1.280206 CGTTTCCAAGTCCGTCCGTC 61.280 60.000 0.00 0.00 0.00 4.79
786 1283 2.281761 CACCCTGTCCTGTGCCAC 60.282 66.667 0.00 0.00 0.00 5.01
916 1416 1.187087 GGTCACTGTACAGGAGGAGG 58.813 60.000 26.12 8.79 0.00 4.30
1193 1706 3.369388 GTCCCTCCCTCCCTCCCT 61.369 72.222 0.00 0.00 0.00 4.20
1226 1739 6.258947 CCGTCTCTTTCTTTCTTCAGAGTTTT 59.741 38.462 0.00 0.00 35.28 2.43
1314 1829 2.688666 TACCTGCTGGAGCCCCTG 60.689 66.667 17.64 0.00 41.18 4.45
1323 1838 3.580319 GAGCCCCTGTGGTGGGTT 61.580 66.667 0.00 0.00 45.70 4.11
1339 1854 1.064758 GGGTTGGCATGATCACCAGTA 60.065 52.381 0.00 0.00 37.24 2.74
1344 1859 2.216898 GGCATGATCACCAGTAAGCTC 58.783 52.381 0.00 0.00 0.00 4.09
1346 1861 2.843701 CATGATCACCAGTAAGCTCCC 58.156 52.381 0.00 0.00 0.00 4.30
1353 1868 3.514309 TCACCAGTAAGCTCCCTTTCTAC 59.486 47.826 0.00 0.00 32.47 2.59
1355 1870 3.908103 ACCAGTAAGCTCCCTTTCTACAA 59.092 43.478 0.00 0.00 32.47 2.41
1358 1873 5.172205 CAGTAAGCTCCCTTTCTACAAGTC 58.828 45.833 0.00 0.00 32.47 3.01
1359 1874 3.704800 AAGCTCCCTTTCTACAAGTCC 57.295 47.619 0.00 0.00 0.00 3.85
1362 1877 4.027437 AGCTCCCTTTCTACAAGTCCTAG 58.973 47.826 0.00 0.00 0.00 3.02
1364 1879 4.382147 GCTCCCTTTCTACAAGTCCTAGTG 60.382 50.000 0.00 0.00 0.00 2.74
1365 1880 4.748701 TCCCTTTCTACAAGTCCTAGTGT 58.251 43.478 0.00 0.00 0.00 3.55
1366 1881 5.895807 TCCCTTTCTACAAGTCCTAGTGTA 58.104 41.667 0.00 0.00 0.00 2.90
1367 1882 5.713861 TCCCTTTCTACAAGTCCTAGTGTAC 59.286 44.000 0.00 0.00 0.00 2.90
1368 1883 5.105432 CCCTTTCTACAAGTCCTAGTGTACC 60.105 48.000 0.00 0.00 0.00 3.34
1369 1884 5.479375 CCTTTCTACAAGTCCTAGTGTACCA 59.521 44.000 0.00 0.00 0.00 3.25
1371 1886 6.982160 TTCTACAAGTCCTAGTGTACCAAA 57.018 37.500 0.00 0.00 0.00 3.28
1372 1887 6.336842 TCTACAAGTCCTAGTGTACCAAAC 57.663 41.667 0.00 0.00 0.00 2.93
1374 1889 3.385755 ACAAGTCCTAGTGTACCAAACGT 59.614 43.478 0.00 0.00 0.00 3.99
1380 1895 3.495753 CCTAGTGTACCAAACGTCCAAAC 59.504 47.826 0.00 0.00 0.00 2.93
1381 1896 2.291365 AGTGTACCAAACGTCCAAACC 58.709 47.619 0.00 0.00 0.00 3.27
1573 2108 5.644644 GTGGTTTTAATCTGCAATCCTGAG 58.355 41.667 0.00 0.00 0.00 3.35
1579 2114 8.411683 GTTTTAATCTGCAATCCTGAGATTCAT 58.588 33.333 0.00 0.00 40.89 2.57
1586 2121 5.761726 TGCAATCCTGAGATTCATATGTGAC 59.238 40.000 1.90 0.00 40.89 3.67
1602 2139 1.013596 TGACGCTGAAGGTGTGTTTG 58.986 50.000 0.00 0.00 38.95 2.93
1842 2405 3.941483 CCATGTTTTAGGAAGTGCGATCT 59.059 43.478 0.00 0.00 0.00 2.75
1845 2408 6.093495 CCATGTTTTAGGAAGTGCGATCTAAA 59.907 38.462 0.00 0.00 32.09 1.85
1847 2410 7.681939 TGTTTTAGGAAGTGCGATCTAAAAT 57.318 32.000 9.37 0.00 41.03 1.82
1848 2411 7.526608 TGTTTTAGGAAGTGCGATCTAAAATG 58.473 34.615 9.37 0.00 41.03 2.32
1849 2412 7.174253 TGTTTTAGGAAGTGCGATCTAAAATGT 59.826 33.333 9.37 0.00 41.03 2.71
1850 2413 8.662141 GTTTTAGGAAGTGCGATCTAAAATGTA 58.338 33.333 9.37 0.00 41.03 2.29
1851 2414 8.958119 TTTAGGAAGTGCGATCTAAAATGTAT 57.042 30.769 0.00 0.00 31.33 2.29
1852 2415 8.958119 TTAGGAAGTGCGATCTAAAATGTATT 57.042 30.769 0.00 0.00 0.00 1.89
1937 2501 2.158623 TGTGCTGGTGTTCCATTTCTCT 60.159 45.455 0.00 0.00 43.43 3.10
1943 2507 4.425772 TGGTGTTCCATTTCTCTCCTCTA 58.574 43.478 0.00 0.00 39.03 2.43
1961 2525 2.233605 TATGGGGGCAGTCGAACGTG 62.234 60.000 0.00 0.00 0.00 4.49
2011 2575 5.188163 TGATGGGTTCTCTTTCGGTAATGTA 59.812 40.000 0.00 0.00 0.00 2.29
2084 2690 7.012232 TCACCGAGTTTTTATTTTAACCTTCGT 59.988 33.333 0.00 0.00 0.00 3.85
2149 2755 6.877322 GTGTTAAAGCTCTTGGTACATCCTTA 59.123 38.462 0.00 0.00 39.30 2.69
2188 2794 4.021016 GGGACGAATCAGTTAGCATATCCT 60.021 45.833 0.00 0.00 0.00 3.24
2326 2932 6.822667 TGTATCCTTATGCTAAATGCCATG 57.177 37.500 0.00 0.00 42.00 3.66
2362 2968 9.922305 CTTTTCGAAGATTGATTCATTAGTACC 57.078 33.333 0.00 0.00 35.04 3.34
2378 2984 3.179685 AGTACCCCCTCCAGTTCTTTAC 58.820 50.000 0.00 0.00 0.00 2.01
2396 3002 4.481930 TTACAACTTGCTTTGGACATCG 57.518 40.909 0.00 0.00 0.00 3.84
2517 3123 8.806146 ACCTTGCAAAACAAATCTACTCATATT 58.194 29.630 0.00 0.00 37.96 1.28
2534 3142 7.011994 ACTCATATTATTTTCATGCCCCATCA 58.988 34.615 0.00 0.00 0.00 3.07
2552 3160 7.231317 GCCCCATCAACATATTTTAGAAGATCA 59.769 37.037 0.00 0.00 0.00 2.92
2616 3224 3.030291 ACATGTTTTGCAGAACTGGGAA 58.970 40.909 19.62 0.93 0.00 3.97
2646 3254 9.195411 GAACATCAAATTTGAATGCTTGAACTA 57.805 29.630 23.91 0.00 41.13 2.24
2671 3279 3.743396 CCTGAAGCAATAGAGATAACCGC 59.257 47.826 0.00 0.00 0.00 5.68
2677 3285 6.835819 AGCAATAGAGATAACCGCACTATA 57.164 37.500 0.00 0.00 0.00 1.31
2770 3488 7.789831 TGTTCATTAGGATAATGACTAGGGAGT 59.210 37.037 10.88 0.00 36.49 3.85
2771 3489 8.652290 GTTCATTAGGATAATGACTAGGGAGTT 58.348 37.037 10.88 0.00 36.49 3.01
2839 3683 6.983906 TCTTCTCAGCAACCATAGATATCA 57.016 37.500 5.32 0.00 0.00 2.15
2871 3715 7.856145 AGAATCGGAGGATTATGATAATTGC 57.144 36.000 0.00 0.00 42.86 3.56
2872 3716 7.628234 AGAATCGGAGGATTATGATAATTGCT 58.372 34.615 0.00 0.00 42.86 3.91
2912 3756 5.935789 TGTGCATGTAGGAACCTACTTAAAC 59.064 40.000 25.11 19.77 46.53 2.01
3015 3860 5.163513 CCATGTTCATTTGCAAGTTCTACC 58.836 41.667 0.00 0.00 0.00 3.18
3032 3877 1.524621 CCGTATTGGCAGCCTCCAG 60.525 63.158 14.15 0.18 37.44 3.86
3046 3891 5.730550 CAGCCTCCAGTGTAGTAATTGTTA 58.269 41.667 0.00 0.00 0.00 2.41
3050 3895 6.092259 GCCTCCAGTGTAGTAATTGTTACTTG 59.908 42.308 7.58 1.23 43.70 3.16
3306 4153 4.100189 ACTGGGACTACAGCTTAGCATAAG 59.900 45.833 7.07 2.58 42.21 1.73
3353 4202 3.426159 CCTGCAACAGTTTAGTAATGCCG 60.426 47.826 3.59 0.00 33.01 5.69
3546 4398 2.103432 TGTCGTGTTGTCTGGTACCATT 59.897 45.455 16.75 0.00 0.00 3.16
3582 4434 3.136626 CCAAGGATTACGAAAGGATCCCT 59.863 47.826 8.55 0.00 44.29 4.20
3614 4466 6.270231 AGAAGTATGTAACCCTGACTGAACTT 59.730 38.462 0.00 0.00 0.00 2.66
3624 4476 3.142174 CTGACTGAACTTCCACCCTTTC 58.858 50.000 0.00 0.00 0.00 2.62
3627 4479 2.158608 ACTGAACTTCCACCCTTTCCAG 60.159 50.000 0.00 0.00 0.00 3.86
3640 4492 6.183361 CCACCCTTTCCAGTCATATATTCAGA 60.183 42.308 0.00 0.00 0.00 3.27
3644 4496 8.790718 CCCTTTCCAGTCATATATTCAGATTTG 58.209 37.037 0.00 0.00 0.00 2.32
3648 4500 8.985315 TCCAGTCATATATTCAGATTTGCTTT 57.015 30.769 0.00 0.00 0.00 3.51
3649 4501 8.843262 TCCAGTCATATATTCAGATTTGCTTTG 58.157 33.333 0.00 0.00 0.00 2.77
3650 4502 8.843262 CCAGTCATATATTCAGATTTGCTTTGA 58.157 33.333 0.00 0.00 0.00 2.69
3657 4509 6.785337 ATTCAGATTTGCTTTGATCCATGA 57.215 33.333 0.00 0.00 0.00 3.07
3662 4521 6.642540 CAGATTTGCTTTGATCCATGATCATG 59.357 38.462 25.97 25.97 46.52 3.07
3665 4524 4.788679 TGCTTTGATCCATGATCATGACT 58.211 39.130 32.71 20.44 46.52 3.41
3667 4526 5.064558 GCTTTGATCCATGATCATGACTCT 58.935 41.667 32.71 15.90 46.52 3.24
3676 4537 7.567458 TCCATGATCATGACTCTATTGTTTCA 58.433 34.615 32.71 0.00 41.20 2.69
3678 4539 8.847196 CCATGATCATGACTCTATTGTTTCATT 58.153 33.333 32.71 0.00 41.20 2.57
3710 4571 0.390124 TTTACGCACCGTTGTCTCCT 59.610 50.000 0.00 0.00 41.54 3.69
3731 4592 2.151202 ACGTCGGCAACAAGATTGAAT 58.849 42.857 0.00 0.00 0.00 2.57
3752 4613 1.272769 GGAGAACTACTGAGGCACGTT 59.727 52.381 0.00 0.00 0.00 3.99
3776 4637 2.035632 GAGGATGTGAGGAGAACCGAT 58.964 52.381 0.00 0.00 41.83 4.18
3826 4687 2.975489 AGATGTACTAGGCATTGGAGGG 59.025 50.000 0.00 0.00 0.00 4.30
3893 4754 2.462889 CACTCCATTGTGTTGTGTTGC 58.537 47.619 0.00 0.00 33.61 4.17
3895 4756 1.682854 CTCCATTGTGTTGTGTTGCCT 59.317 47.619 0.00 0.00 0.00 4.75
3998 4859 5.581874 CACAGATTGTTGCCAAGTTTTCTTT 59.418 36.000 0.00 0.00 38.17 2.52
4017 4878 3.641437 TTTCCTCATCGGCAACTTTTG 57.359 42.857 0.00 0.00 0.00 2.44
4018 4879 1.533625 TCCTCATCGGCAACTTTTGG 58.466 50.000 0.00 0.00 0.00 3.28
4025 4886 3.320673 TCGGCAACTTTTGGTTTTTGT 57.679 38.095 0.00 0.00 35.74 2.83
4054 4915 3.453424 AGTTTTGTCCACGGCATTTTTC 58.547 40.909 0.00 0.00 0.00 2.29
4073 4934 6.749036 TTTTCCTCCTCTTCTTCTTGTACT 57.251 37.500 0.00 0.00 0.00 2.73
4095 4956 6.512297 ACTGTTTGAGTTTGTTGACTTGTTT 58.488 32.000 0.00 0.00 0.00 2.83
4109 4970 0.250684 TTGTTTGGAGCGATCAGGCA 60.251 50.000 1.84 0.00 34.64 4.75
4348 5211 1.931635 TGTGGGTTATCAAAAGGGGC 58.068 50.000 0.00 0.00 0.00 5.80
4369 5250 2.284855 CGTGCTACGCGTAAAAAGATCC 60.285 50.000 20.97 0.00 33.65 3.36
4533 5414 3.392882 CAAGGTCCTTGTTGCAAAATCC 58.607 45.455 21.76 0.00 36.79 3.01
4534 5415 1.970640 AGGTCCTTGTTGCAAAATCCC 59.029 47.619 0.00 0.00 0.00 3.85
4561 5442 7.132213 TCGTCTCTAATTTTCTGCAACAAAAG 58.868 34.615 8.69 0.00 0.00 2.27
4582 5463 1.421268 TCATGTTGCACAACCTCCTCT 59.579 47.619 10.82 0.00 40.46 3.69
4656 5551 9.358872 CTCTTTTTAATTTCCTGCAATAAGACC 57.641 33.333 0.00 0.00 0.00 3.85
4682 5578 5.239525 GTGTTGCACAACCTCTTTTCTCTAT 59.760 40.000 10.82 0.00 40.46 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 1.985473 TATGGCATTGGAGATGGTGC 58.015 50.000 4.78 0.00 36.88 5.01
69 71 3.305950 GCACCACAAAACTTCATATGGCA 60.306 43.478 2.13 0.00 0.00 4.92
143 147 5.582689 AGCAACAAGAAGCAAAACTTACT 57.417 34.783 0.00 0.00 39.29 2.24
189 193 4.556942 TCAAGTTGCAACATTGAGTGAG 57.443 40.909 30.11 6.07 0.00 3.51
220 224 3.945981 TTGCGTCCAGACTATACAACA 57.054 42.857 0.00 0.00 0.00 3.33
256 261 2.043248 GGTCTGCCCTCGGTCCTA 60.043 66.667 0.00 0.00 0.00 2.94
278 283 6.434028 AGCTTCCTCAACAATGTAAAAGCATA 59.566 34.615 15.31 0.00 37.49 3.14
279 284 5.244626 AGCTTCCTCAACAATGTAAAAGCAT 59.755 36.000 15.31 0.00 37.49 3.79
280 285 4.584325 AGCTTCCTCAACAATGTAAAAGCA 59.416 37.500 15.31 0.00 37.49 3.91
281 286 5.126396 AGCTTCCTCAACAATGTAAAAGC 57.874 39.130 8.87 8.87 36.42 3.51
282 287 6.317789 TGAGCTTCCTCAACAATGTAAAAG 57.682 37.500 0.00 0.00 44.79 2.27
326 332 0.108585 AGTCAGAACCGGCACATGTT 59.891 50.000 0.00 0.00 0.00 2.71
385 392 8.331022 CAACCGAGATAACAAGATATTGAACAG 58.669 37.037 7.16 0.00 0.00 3.16
441 448 7.448161 TCCATAAGTAACATGCAAATATCCCTG 59.552 37.037 0.00 0.00 0.00 4.45
490 497 6.093219 CCATCCAACTCTGACACTCAAAATAG 59.907 42.308 0.00 0.00 0.00 1.73
519 526 3.770040 CGGACACTGATGCGGGGA 61.770 66.667 0.00 0.00 0.00 4.81
524 531 3.558411 GCTCGCGGACACTGATGC 61.558 66.667 6.13 0.00 0.00 3.91
529 536 4.057428 GACCAGCTCGCGGACACT 62.057 66.667 6.13 0.00 0.00 3.55
535 542 2.279120 GATCTGGACCAGCTCGCG 60.279 66.667 17.33 0.00 0.00 5.87
536 543 1.227205 CTGATCTGGACCAGCTCGC 60.227 63.158 17.33 6.24 30.28 5.03
538 545 0.463620 GGACTGATCTGGACCAGCTC 59.536 60.000 17.33 17.11 33.90 4.09
539 546 1.326213 CGGACTGATCTGGACCAGCT 61.326 60.000 17.33 7.16 33.90 4.24
540 547 1.142748 CGGACTGATCTGGACCAGC 59.857 63.158 17.33 4.34 33.90 4.85
541 548 1.142748 GCGGACTGATCTGGACCAG 59.857 63.158 15.99 15.99 36.53 4.00
542 549 2.710902 CGCGGACTGATCTGGACCA 61.711 63.158 0.00 0.00 0.00 4.02
543 550 2.105128 CGCGGACTGATCTGGACC 59.895 66.667 0.00 6.34 0.00 4.46
544 551 2.105128 CCGCGGACTGATCTGGAC 59.895 66.667 24.07 0.00 0.00 4.02
545 552 2.044352 TCCGCGGACTGATCTGGA 60.044 61.111 27.28 0.00 0.00 3.86
546 553 2.105128 GTCCGCGGACTGATCTGG 59.895 66.667 43.32 8.23 41.57 3.86
547 554 0.389817 TTTGTCCGCGGACTGATCTG 60.390 55.000 46.72 13.17 44.80 2.90
548 555 0.320374 TTTTGTCCGCGGACTGATCT 59.680 50.000 46.72 0.00 44.80 2.75
549 556 1.369625 ATTTTGTCCGCGGACTGATC 58.630 50.000 46.72 28.72 44.80 2.92
550 557 2.277084 GTATTTTGTCCGCGGACTGAT 58.723 47.619 46.72 37.26 44.80 2.90
551 558 1.001068 TGTATTTTGTCCGCGGACTGA 59.999 47.619 46.72 35.52 44.80 3.41
552 559 1.434555 TGTATTTTGTCCGCGGACTG 58.565 50.000 46.72 16.64 44.80 3.51
553 560 2.172851 TTGTATTTTGTCCGCGGACT 57.827 45.000 46.72 33.85 44.80 3.85
554 561 2.160813 ACATTGTATTTTGTCCGCGGAC 59.839 45.455 43.88 43.88 44.77 4.79
555 562 2.417239 GACATTGTATTTTGTCCGCGGA 59.583 45.455 27.28 27.28 36.98 5.54
556 563 2.780993 GACATTGTATTTTGTCCGCGG 58.219 47.619 22.12 22.12 36.98 6.46
561 568 6.813152 CCCTGAAATGGACATTGTATTTTGTC 59.187 38.462 0.00 0.00 41.19 3.18
562 569 6.295802 CCCCTGAAATGGACATTGTATTTTGT 60.296 38.462 0.00 0.00 0.00 2.83
563 570 6.108015 CCCCTGAAATGGACATTGTATTTTG 58.892 40.000 0.00 0.00 0.00 2.44
564 571 5.784906 ACCCCTGAAATGGACATTGTATTTT 59.215 36.000 0.00 0.00 0.00 1.82
572 579 2.109834 TGTTGACCCCTGAAATGGACAT 59.890 45.455 0.00 0.00 0.00 3.06
593 600 7.716998 CACAAACTATGTTAGGGCATCTCTAAT 59.283 37.037 0.00 0.00 41.46 1.73
621 628 5.923733 TGATAGTGTTCTTCTCCTTCCTC 57.076 43.478 0.00 0.00 0.00 3.71
625 632 4.956700 TCGGATGATAGTGTTCTTCTCCTT 59.043 41.667 0.00 0.00 0.00 3.36
628 635 6.507900 TCAATCGGATGATAGTGTTCTTCTC 58.492 40.000 0.00 0.00 33.40 2.87
646 653 5.966636 TCATTAGTGAAACGGATCAATCG 57.033 39.130 0.00 0.00 45.86 3.34
648 655 7.012704 CCTTCATCATTAGTGAAACGGATCAAT 59.987 37.037 0.00 0.00 45.86 2.57
657 664 7.230747 TGGAGTTTCCTTCATCATTAGTGAAA 58.769 34.615 0.00 0.00 36.19 2.69
703 710 3.734231 ACGAGACTTGTATTTGACGTGTG 59.266 43.478 0.00 0.00 0.00 3.82
718 725 2.604132 GGAAACGAGACGAAACGAGACT 60.604 50.000 0.00 0.00 0.00 3.24
720 727 1.334556 TGGAAACGAGACGAAACGAGA 59.665 47.619 0.00 0.00 0.00 4.04
721 728 1.762419 TGGAAACGAGACGAAACGAG 58.238 50.000 0.00 0.00 0.00 4.18
722 729 2.121786 CTTGGAAACGAGACGAAACGA 58.878 47.619 0.00 0.00 45.46 3.85
764 1258 2.930562 ACAGGACAGGGTGGAGGC 60.931 66.667 0.00 0.00 0.00 4.70
860 1360 0.819666 GGAATGGGATGCGGGTTCTC 60.820 60.000 0.00 0.00 0.00 2.87
1193 1706 0.954449 AGAAAGAGACGGCGTCGAGA 60.954 55.000 31.59 0.00 37.67 4.04
1229 1742 4.252073 CAGAGGACATTTTCAGAGGACTG 58.748 47.826 0.00 0.00 44.66 3.51
1302 1817 4.729918 CACCACAGGGGCTCCAGC 62.730 72.222 4.79 0.00 42.05 4.85
1314 1829 0.611618 TGATCATGCCAACCCACCAC 60.612 55.000 0.00 0.00 0.00 4.16
1323 1838 1.561076 AGCTTACTGGTGATCATGCCA 59.439 47.619 0.00 1.21 0.00 4.92
1339 1854 3.252351 AGGACTTGTAGAAAGGGAGCTT 58.748 45.455 0.00 0.00 0.00 3.74
1344 1859 5.105432 GGTACACTAGGACTTGTAGAAAGGG 60.105 48.000 0.00 0.00 0.00 3.95
1346 1861 6.585695 TGGTACACTAGGACTTGTAGAAAG 57.414 41.667 0.00 0.00 0.00 2.62
1353 1868 3.985925 GACGTTTGGTACACTAGGACTTG 59.014 47.826 0.00 0.00 39.29 3.16
1355 1870 2.560105 GGACGTTTGGTACACTAGGACT 59.440 50.000 0.00 0.00 39.29 3.85
1358 1873 3.389925 TTGGACGTTTGGTACACTAGG 57.610 47.619 0.00 0.00 39.90 3.02
1359 1874 3.495753 GGTTTGGACGTTTGGTACACTAG 59.504 47.826 0.00 0.00 39.90 2.57
1362 1877 1.003652 CGGTTTGGACGTTTGGTACAC 60.004 52.381 0.00 0.00 39.90 2.90
1364 1879 1.528161 CTCGGTTTGGACGTTTGGTAC 59.472 52.381 0.00 0.00 0.00 3.34
1365 1880 1.868469 CTCGGTTTGGACGTTTGGTA 58.132 50.000 0.00 0.00 0.00 3.25
1366 1881 1.441732 GCTCGGTTTGGACGTTTGGT 61.442 55.000 0.00 0.00 0.00 3.67
1367 1882 1.164041 AGCTCGGTTTGGACGTTTGG 61.164 55.000 0.00 0.00 0.00 3.28
1368 1883 0.234884 GAGCTCGGTTTGGACGTTTG 59.765 55.000 0.00 0.00 0.00 2.93
1369 1884 0.179067 TGAGCTCGGTTTGGACGTTT 60.179 50.000 9.64 0.00 0.00 3.60
1371 1886 0.034896 ATTGAGCTCGGTTTGGACGT 59.965 50.000 9.64 0.00 0.00 4.34
1372 1887 1.128692 GAATTGAGCTCGGTTTGGACG 59.871 52.381 9.64 0.00 0.00 4.79
1374 1889 2.859165 AGAATTGAGCTCGGTTTGGA 57.141 45.000 9.64 0.00 0.00 3.53
1414 1942 7.502226 ACGATCACTGAGAAGAGAAGAAGATAT 59.498 37.037 0.00 0.00 0.00 1.63
1480 2015 2.813908 GGAGTAACCAGCACCGCG 60.814 66.667 0.00 0.00 38.79 6.46
1573 2108 4.025396 CACCTTCAGCGTCACATATGAATC 60.025 45.833 10.38 0.00 36.31 2.52
1579 2114 1.343142 ACACACCTTCAGCGTCACATA 59.657 47.619 0.00 0.00 0.00 2.29
1586 2121 1.670811 AGAACAAACACACCTTCAGCG 59.329 47.619 0.00 0.00 0.00 5.18
1602 2139 2.262423 AGGAAGAACACCAGCAGAAC 57.738 50.000 0.00 0.00 0.00 3.01
1782 2319 4.275936 AGTTAACAACTCTCACATGGTTGC 59.724 41.667 8.61 0.00 42.55 4.17
1842 2405 9.638239 GGAGCATGAAGAAAACAATACATTTTA 57.362 29.630 0.00 0.00 29.44 1.52
1845 2408 7.395489 AGAGGAGCATGAAGAAAACAATACATT 59.605 33.333 0.00 0.00 0.00 2.71
1847 2410 6.149973 CAGAGGAGCATGAAGAAAACAATACA 59.850 38.462 0.00 0.00 0.00 2.29
1848 2411 6.549952 CAGAGGAGCATGAAGAAAACAATAC 58.450 40.000 0.00 0.00 0.00 1.89
1849 2412 5.124457 GCAGAGGAGCATGAAGAAAACAATA 59.876 40.000 0.00 0.00 0.00 1.90
1850 2413 4.082354 GCAGAGGAGCATGAAGAAAACAAT 60.082 41.667 0.00 0.00 0.00 2.71
1851 2414 3.254166 GCAGAGGAGCATGAAGAAAACAA 59.746 43.478 0.00 0.00 0.00 2.83
1852 2415 2.816087 GCAGAGGAGCATGAAGAAAACA 59.184 45.455 0.00 0.00 0.00 2.83
1865 2429 0.803740 GCAAGAAAGCTGCAGAGGAG 59.196 55.000 20.43 0.58 0.00 3.69
1937 2501 1.457643 CGACTGCCCCCATAGAGGA 60.458 63.158 0.00 0.00 41.22 3.71
1943 2507 3.319198 ACGTTCGACTGCCCCCAT 61.319 61.111 0.00 0.00 0.00 4.00
1961 2525 2.477863 GCAAATGGCGGTGTAGATCAAC 60.478 50.000 0.00 0.00 0.00 3.18
2011 2575 2.256117 ACTGGTGTTAAAAGCGAGCT 57.744 45.000 0.00 0.00 0.00 4.09
2056 2662 9.338291 GAAGGTTAAAATAAAAACTCGGTGATC 57.662 33.333 0.00 0.00 0.00 2.92
2084 2690 1.111116 ACGGGTCAGAACCTTCGACA 61.111 55.000 2.07 0.00 45.66 4.35
2188 2794 3.678056 AGCATAAAGAACCACGTCTCA 57.322 42.857 0.00 0.00 0.00 3.27
2315 2921 3.184541 GCTGTTGCTTCATGGCATTTAG 58.815 45.455 0.00 0.00 42.09 1.85
2362 2968 3.790089 AGTTGTAAAGAACTGGAGGGG 57.210 47.619 0.00 0.00 34.79 4.79
2378 2984 3.624326 TTCGATGTCCAAAGCAAGTTG 57.376 42.857 0.00 0.00 0.00 3.16
2396 3002 6.414987 CGAAATTGACTTTTGGAGACACTTTC 59.585 38.462 9.48 9.48 41.54 2.62
2477 3083 9.184523 TGTTTTGCAAGGTACTAGCATAATAAT 57.815 29.630 0.00 0.00 38.49 1.28
2478 3084 8.568676 TGTTTTGCAAGGTACTAGCATAATAA 57.431 30.769 0.00 0.00 38.49 1.40
2517 3123 7.615039 AATATGTTGATGGGGCATGAAAATA 57.385 32.000 0.00 0.00 25.93 1.40
2527 3135 8.696043 TGATCTTCTAAAATATGTTGATGGGG 57.304 34.615 0.00 0.00 0.00 4.96
2534 3142 7.716998 ACTGCCGATGATCTTCTAAAATATGTT 59.283 33.333 6.99 0.00 0.00 2.71
2552 3160 3.126001 TCTGAAACTTTGACTGCCGAT 57.874 42.857 0.00 0.00 0.00 4.18
2612 3220 8.553696 GCATTCAAATTTGATGTTCATATTCCC 58.446 33.333 21.10 3.00 37.00 3.97
2616 3224 9.878667 TCAAGCATTCAAATTTGATGTTCATAT 57.121 25.926 21.10 7.49 37.00 1.78
2646 3254 5.279708 CGGTTATCTCTATTGCTTCAGGGAT 60.280 44.000 1.04 1.04 36.04 3.85
2702 3310 3.111098 GCTGAAGAGCAACAACACTTTG 58.889 45.455 0.00 0.00 45.46 2.77
2759 3477 7.618117 TGAATACAGTATGAAACTCCCTAGTCA 59.382 37.037 0.00 0.00 39.69 3.41
2789 3507 6.024552 ACAAAATGAACATACGGAGCAATT 57.975 33.333 0.00 0.00 0.00 2.32
2839 3683 7.796054 TCATAATCCTCCGATTCTTCTCTTTT 58.204 34.615 0.00 0.00 39.49 2.27
2871 3715 6.321181 ACATGCACAAACAATATACCCCTAAG 59.679 38.462 0.00 0.00 0.00 2.18
2872 3716 6.191315 ACATGCACAAACAATATACCCCTAA 58.809 36.000 0.00 0.00 0.00 2.69
2990 3835 5.280654 AGAACTTGCAAATGAACATGGTT 57.719 34.783 0.00 0.00 0.00 3.67
3015 3860 1.091771 CACTGGAGGCTGCCAATACG 61.092 60.000 22.65 7.42 37.52 3.06
3032 3877 7.589954 CCTGCAAACAAGTAACAATTACTACAC 59.410 37.037 1.79 0.00 45.33 2.90
3046 3891 1.473258 TCAAGTGCCTGCAAACAAGT 58.527 45.000 0.00 0.00 0.00 3.16
3050 3895 3.855689 ATGTATCAAGTGCCTGCAAAC 57.144 42.857 0.00 0.00 0.00 2.93
3164 4010 0.327924 TGGGATGAACGGCAGAACAT 59.672 50.000 0.00 0.00 0.00 2.71
3306 4153 2.671888 GAGCTACGGAGTAAGCCAAAAC 59.328 50.000 0.00 0.00 45.13 2.43
3353 4202 3.316308 ACATTGTGTTGAAGGTTGCTCTC 59.684 43.478 0.00 0.00 0.00 3.20
3426 4275 3.550437 AAGAAGTTCGGCTCATATGCT 57.450 42.857 0.00 0.00 0.00 3.79
3427 4276 4.210120 CAGTAAGAAGTTCGGCTCATATGC 59.790 45.833 0.00 0.00 0.00 3.14
3428 4277 5.352284 ACAGTAAGAAGTTCGGCTCATATG 58.648 41.667 0.00 0.00 0.00 1.78
3429 4278 5.599999 ACAGTAAGAAGTTCGGCTCATAT 57.400 39.130 0.00 0.00 0.00 1.78
3430 4279 6.320418 TGATACAGTAAGAAGTTCGGCTCATA 59.680 38.462 0.00 0.00 0.00 2.15
3431 4280 3.963428 ACAGTAAGAAGTTCGGCTCAT 57.037 42.857 0.00 0.00 0.00 2.90
3432 4281 4.461431 TGATACAGTAAGAAGTTCGGCTCA 59.539 41.667 0.00 0.00 0.00 4.26
3433 4282 4.995124 TGATACAGTAAGAAGTTCGGCTC 58.005 43.478 0.00 0.00 0.00 4.70
3434 4283 5.599999 ATGATACAGTAAGAAGTTCGGCT 57.400 39.130 0.00 0.00 0.00 5.52
3435 4284 7.652105 TCATTATGATACAGTAAGAAGTTCGGC 59.348 37.037 0.00 0.00 0.00 5.54
3466 4318 0.994247 TGACCAGACCAATCCTGCAT 59.006 50.000 0.00 0.00 0.00 3.96
3467 4319 0.325933 CTGACCAGACCAATCCTGCA 59.674 55.000 0.00 0.00 0.00 4.41
3582 4434 5.655090 TCAGGGTTACATACTTCTCGATTGA 59.345 40.000 0.00 0.00 0.00 2.57
3614 4466 5.669904 TGAATATATGACTGGAAAGGGTGGA 59.330 40.000 0.00 0.00 0.00 4.02
3624 4476 8.843262 TCAAAGCAAATCTGAATATATGACTGG 58.157 33.333 0.00 0.00 0.00 4.00
3627 4479 9.837525 GGATCAAAGCAAATCTGAATATATGAC 57.162 33.333 0.00 0.00 0.00 3.06
3649 4501 8.618702 AAACAATAGAGTCATGATCATGGATC 57.381 34.615 30.54 26.29 39.24 3.36
3650 4502 8.215736 TGAAACAATAGAGTCATGATCATGGAT 58.784 33.333 30.54 20.97 39.24 3.41
3657 4509 8.797350 TCACAATGAAACAATAGAGTCATGAT 57.203 30.769 0.00 0.00 31.20 2.45
3662 4521 8.660373 CCTACTTCACAATGAAACAATAGAGTC 58.340 37.037 0.00 0.00 35.73 3.36
3665 4524 6.374333 GGCCTACTTCACAATGAAACAATAGA 59.626 38.462 0.00 0.00 35.73 1.98
3667 4526 6.245408 AGGCCTACTTCACAATGAAACAATA 58.755 36.000 1.29 0.00 35.73 1.90
3676 4537 3.007635 GCGTAAAGGCCTACTTCACAAT 58.992 45.455 5.16 0.00 38.85 2.71
3678 4539 1.345089 TGCGTAAAGGCCTACTTCACA 59.655 47.619 5.16 0.00 38.85 3.58
3710 4571 2.442212 TCAATCTTGTTGCCGACGTA 57.558 45.000 0.00 0.00 0.00 3.57
3731 4592 0.888619 CGTGCCTCAGTAGTTCTCCA 59.111 55.000 0.00 0.00 0.00 3.86
3752 4613 2.461695 GTTCTCCTCACATCCTCCTCA 58.538 52.381 0.00 0.00 0.00 3.86
3776 4637 4.554919 CGTCTCAAGACTTTCTCTTCGTCA 60.555 45.833 8.43 0.00 42.66 4.35
3826 4687 2.528743 CGTCATCCATCGCTGCCAC 61.529 63.158 0.00 0.00 0.00 5.01
3895 4756 9.734620 GCTTCTGCAATATCAAATTATGTACAA 57.265 29.630 0.00 0.00 39.41 2.41
3998 4859 1.885887 CCAAAAGTTGCCGATGAGGAA 59.114 47.619 0.00 0.00 45.00 3.36
4032 4893 2.793278 AAATGCCGTGGACAAAACTC 57.207 45.000 0.00 0.00 0.00 3.01
4045 4906 4.339748 AGAAGAAGAGGAGGAAAAATGCC 58.660 43.478 0.00 0.00 0.00 4.40
4054 4915 5.476091 AACAGTACAAGAAGAAGAGGAGG 57.524 43.478 0.00 0.00 0.00 4.30
4073 4934 5.694006 CCAAACAAGTCAACAAACTCAAACA 59.306 36.000 0.00 0.00 0.00 2.83
4095 4956 3.086391 GCTCTGCCTGATCGCTCCA 62.086 63.158 0.00 0.00 0.00 3.86
4109 4970 5.873712 CACAGTTCAGATACATGAAAGCTCT 59.126 40.000 0.00 0.00 40.72 4.09
4360 5224 2.106683 CGAGGCGGCGGATCTTTTT 61.107 57.895 9.78 0.00 0.00 1.94
4533 5414 3.861840 TGCAGAAAATTAGAGACGAGGG 58.138 45.455 0.00 0.00 0.00 4.30
4534 5415 4.690748 TGTTGCAGAAAATTAGAGACGAGG 59.309 41.667 0.00 0.00 0.00 4.63
4610 5504 3.769300 GAGGAGGTTTTGCAATATGGGTT 59.231 43.478 0.00 0.00 0.00 4.11
4617 5511 8.978874 AAATTAAAAAGAGGAGGTTTTGCAAT 57.021 26.923 0.00 0.00 0.00 3.56



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.