Multiple sequence alignment - TraesCS1A01G332000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G332000 chr1A 100.000 2848 0 0 1 2848 520762140 520764987 0.000000e+00 5260.0
1 TraesCS1A01G332000 chr1A 77.806 392 47 24 1973 2346 520772583 520772952 3.720000e-49 206.0
2 TraesCS1A01G332000 chr1A 85.938 64 9 0 36 99 432515235 432515298 5.090000e-08 69.4
3 TraesCS1A01G332000 chr1D 89.733 1646 94 28 20 1626 424866834 424868443 0.000000e+00 2034.0
4 TraesCS1A01G332000 chr1D 82.198 455 36 19 1664 2097 424868515 424868945 1.620000e-92 350.0
5 TraesCS1A01G332000 chr1D 88.372 129 13 1 2719 2847 88372278 88372404 1.370000e-33 154.0
6 TraesCS1A01G332000 chr1D 90.278 72 3 2 1940 2007 424927242 424927313 1.090000e-14 91.6
7 TraesCS1A01G332000 chr1B 86.169 1352 97 52 1045 2348 573937318 573938627 0.000000e+00 1378.0
8 TraesCS1A01G332000 chr1B 90.602 532 36 8 35 563 573936248 573936768 0.000000e+00 693.0
9 TraesCS1A01G332000 chr1B 91.633 490 27 8 546 1030 573936782 573937262 0.000000e+00 665.0
10 TraesCS1A01G332000 chr5A 88.811 286 21 7 2432 2716 8073367 8073092 9.770000e-90 340.0
11 TraesCS1A01G332000 chr5A 87.153 288 24 6 2433 2716 365580132 365579854 5.920000e-82 315.0
12 TraesCS1A01G332000 chr5A 88.889 126 12 1 2723 2848 345556098 345555975 1.370000e-33 154.0
13 TraesCS1A01G332000 chr3A 88.316 291 22 7 2434 2723 640369618 640369897 3.510000e-89 339.0
14 TraesCS1A01G332000 chr3A 89.062 128 11 1 2721 2848 181668814 181668938 3.800000e-34 156.0
15 TraesCS1A01G332000 chrUn 88.809 277 21 6 2432 2707 87719880 87719613 5.880000e-87 331.0
16 TraesCS1A01G332000 chr7B 88.809 277 21 6 2432 2707 713698739 713698472 5.880000e-87 331.0
17 TraesCS1A01G332000 chr4D 86.755 302 29 6 2434 2734 464726737 464726446 2.740000e-85 326.0
18 TraesCS1A01G332000 chr5D 87.770 278 24 6 2431 2707 74911119 74910851 1.650000e-82 316.0
19 TraesCS1A01G332000 chr5D 88.462 130 13 1 2719 2848 9590327 9590200 3.800000e-34 156.0
20 TraesCS1A01G332000 chr5B 87.063 286 26 7 2424 2707 399955506 399955782 2.130000e-81 313.0
21 TraesCS1A01G332000 chr7D 86.667 285 26 8 2424 2707 562658173 562658446 3.560000e-79 305.0
22 TraesCS1A01G332000 chr7D 85.714 56 7 1 44 99 21009292 21009238 1.100000e-04 58.4
23 TraesCS1A01G332000 chr7A 89.231 130 11 2 2719 2848 154763855 154763981 2.940000e-35 159.0
24 TraesCS1A01G332000 chr6A 89.683 126 11 1 2723 2848 582159455 582159578 2.940000e-35 159.0
25 TraesCS1A01G332000 chr4A 89.600 125 11 1 2723 2847 677015323 677015201 1.060000e-34 158.0
26 TraesCS1A01G332000 chr2A 88.976 127 12 1 2722 2848 293936774 293936898 3.800000e-34 156.0
27 TraesCS1A01G332000 chr2A 87.037 54 6 1 67 120 92470868 92470920 3.060000e-05 60.2
28 TraesCS1A01G332000 chr3D 88.372 129 12 2 2720 2847 526465044 526464918 4.910000e-33 152.0
29 TraesCS1A01G332000 chr4B 93.617 47 3 0 68 114 58959243 58959197 1.420000e-08 71.3
30 TraesCS1A01G332000 chr6B 80.682 88 15 2 36 122 173662204 173662118 1.830000e-07 67.6
31 TraesCS1A01G332000 chr6D 83.824 68 10 1 36 102 77862592 77862659 2.370000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G332000 chr1A 520762140 520764987 2847 False 5260 5260 100.0000 1 2848 1 chr1A.!!$F2 2847
1 TraesCS1A01G332000 chr1D 424866834 424868945 2111 False 1192 2034 85.9655 20 2097 2 chr1D.!!$F3 2077
2 TraesCS1A01G332000 chr1B 573936248 573938627 2379 False 912 1378 89.4680 35 2348 3 chr1B.!!$F1 2313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 420 0.178961 GCTGGGAAAAGGGACAAGGT 60.179 55.0 0.0 0.0 0.0 3.50 F
1051 1129 0.247460 CTCACCCATTGACTCGCAGA 59.753 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1626 1725 0.031585 GCAGTGACTGTCCGTACACA 59.968 55.0 14.82 0.0 35.97 3.72 R
2272 2446 0.042731 ATTTCTCTCCCGTCCCAGGA 59.957 55.0 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.126151 CCAGTCACTAGTAATTAGATCAAGAGA 57.874 37.037 0.00 0.00 33.39 3.10
33 35 8.904834 TCACTAGTAATTAGATCAAGAGACCAC 58.095 37.037 0.00 0.00 33.39 4.16
70 72 6.828273 TCAATCCAACGATCCAATTTGTATCT 59.172 34.615 0.00 0.00 0.00 1.98
102 105 8.752187 ACTGTGGTATTTGATGAATAAAGCATT 58.248 29.630 0.00 0.00 32.20 3.56
121 124 7.112452 AGCATTGCTTTACCCCTAATAAAAG 57.888 36.000 5.03 0.00 33.89 2.27
130 133 5.913946 ACCCCTAATAAAAGGATCTCCAG 57.086 43.478 0.00 0.00 39.15 3.86
133 136 5.013599 CCCCTAATAAAAGGATCTCCAGGAG 59.986 48.000 10.70 10.70 39.15 3.69
152 155 1.445716 GCTGCCCATGTCTGCATCTC 61.446 60.000 2.74 0.00 36.79 2.75
214 218 2.285827 ATCGAACAGCTCTTCCTTCG 57.714 50.000 0.00 0.00 37.45 3.79
217 221 2.135933 CGAACAGCTCTTCCTTCGTTT 58.864 47.619 0.00 0.00 32.65 3.60
228 232 4.755123 TCTTCCTTCGTTTCTCAAATCACC 59.245 41.667 0.00 0.00 0.00 4.02
367 371 4.768968 AGCATTGCTCAATCCAGTTAAAGT 59.231 37.500 5.03 0.00 30.62 2.66
368 372 5.244626 AGCATTGCTCAATCCAGTTAAAGTT 59.755 36.000 5.03 0.00 30.62 2.66
369 373 6.434028 AGCATTGCTCAATCCAGTTAAAGTTA 59.566 34.615 5.03 0.00 30.62 2.24
370 374 7.039784 AGCATTGCTCAATCCAGTTAAAGTTAA 60.040 33.333 5.03 0.00 30.62 2.01
371 375 7.598493 GCATTGCTCAATCCAGTTAAAGTTAAA 59.402 33.333 0.16 0.00 0.00 1.52
372 376 9.132521 CATTGCTCAATCCAGTTAAAGTTAAAG 57.867 33.333 0.00 0.00 0.00 1.85
373 377 7.817418 TGCTCAATCCAGTTAAAGTTAAAGT 57.183 32.000 0.00 0.00 0.00 2.66
374 378 7.648142 TGCTCAATCCAGTTAAAGTTAAAGTG 58.352 34.615 0.00 0.00 0.00 3.16
375 379 6.582672 GCTCAATCCAGTTAAAGTTAAAGTGC 59.417 38.462 0.00 0.00 0.00 4.40
376 380 7.522236 GCTCAATCCAGTTAAAGTTAAAGTGCT 60.522 37.037 0.00 0.00 0.00 4.40
377 381 7.871853 TCAATCCAGTTAAAGTTAAAGTGCTC 58.128 34.615 0.00 0.00 0.00 4.26
378 382 7.500892 TCAATCCAGTTAAAGTTAAAGTGCTCA 59.499 33.333 0.00 0.00 0.00 4.26
379 383 7.817418 ATCCAGTTAAAGTTAAAGTGCTCAA 57.183 32.000 0.00 0.00 0.00 3.02
380 384 7.633193 TCCAGTTAAAGTTAAAGTGCTCAAA 57.367 32.000 0.00 0.00 0.00 2.69
381 385 8.057536 TCCAGTTAAAGTTAAAGTGCTCAAAA 57.942 30.769 0.00 0.00 0.00 2.44
382 386 8.524487 TCCAGTTAAAGTTAAAGTGCTCAAAAA 58.476 29.630 0.00 0.00 0.00 1.94
399 415 1.717032 AAAAGGCTGGGAAAAGGGAC 58.283 50.000 0.00 0.00 0.00 4.46
404 420 0.178961 GCTGGGAAAAGGGACAAGGT 60.179 55.000 0.00 0.00 0.00 3.50
405 421 1.911057 CTGGGAAAAGGGACAAGGTC 58.089 55.000 0.00 0.00 0.00 3.85
406 422 1.144913 CTGGGAAAAGGGACAAGGTCA 59.855 52.381 0.00 0.00 33.68 4.02
407 423 1.133606 TGGGAAAAGGGACAAGGTCAC 60.134 52.381 0.00 0.00 36.00 3.67
412 428 3.637273 GGGACAAGGTCACCCGCT 61.637 66.667 0.00 0.00 33.68 5.52
435 451 2.875296 TCCTGTTTTTCCATGTCTGGG 58.125 47.619 0.00 0.00 43.34 4.45
528 544 3.433740 GGTTCTCCACACCAGAAGAAACT 60.434 47.826 0.00 0.00 34.04 2.66
533 549 4.792068 TCCACACCAGAAGAAACTCAATT 58.208 39.130 0.00 0.00 0.00 2.32
569 585 1.745232 TTAACCTAAGCACGCATGGG 58.255 50.000 8.44 8.44 0.00 4.00
618 663 7.490402 TGTTAAGCTAGCTCTCGTTTTTATACC 59.510 37.037 19.65 0.00 0.00 2.73
656 701 4.716784 TCAAGCCAGATCCAACACTACTAT 59.283 41.667 0.00 0.00 0.00 2.12
658 703 4.033709 AGCCAGATCCAACACTACTATGT 58.966 43.478 0.00 0.00 0.00 2.29
659 704 5.208890 AGCCAGATCCAACACTACTATGTA 58.791 41.667 0.00 0.00 30.75 2.29
670 715 4.338682 ACACTACTATGTACTGCTGCTACC 59.661 45.833 0.00 0.00 0.00 3.18
675 721 0.611062 TGTACTGCTGCTACCGAGGT 60.611 55.000 0.00 0.00 0.00 3.85
678 724 1.446792 CTGCTGCTACCGAGGTGTG 60.447 63.158 4.80 0.00 0.00 3.82
745 791 4.094887 CGCCTACTAGACCGTGTTAAGTTA 59.905 45.833 0.00 0.00 0.00 2.24
756 802 4.495184 CCGTGTTAAGTTATCGGGCAAATC 60.495 45.833 11.39 0.00 37.92 2.17
774 820 4.470050 GCGCGCGACTTTGACGAG 62.470 66.667 37.18 0.00 0.00 4.18
857 905 5.775686 TCTTGCTCCAATTTGATTTGACTG 58.224 37.500 0.00 0.00 0.00 3.51
961 1012 1.302832 GACCATCCATCCATCCGGC 60.303 63.158 0.00 0.00 0.00 6.13
1033 1091 0.683973 GACTCATCCATCCATCGCCT 59.316 55.000 0.00 0.00 0.00 5.52
1047 1125 1.811266 CGCCTCACCCATTGACTCG 60.811 63.158 0.00 0.00 0.00 4.18
1049 1127 1.296392 CCTCACCCATTGACTCGCA 59.704 57.895 0.00 0.00 0.00 5.10
1050 1128 0.742281 CCTCACCCATTGACTCGCAG 60.742 60.000 0.00 0.00 0.00 5.18
1051 1129 0.247460 CTCACCCATTGACTCGCAGA 59.753 55.000 0.00 0.00 0.00 4.26
1074 1164 2.808321 GAAAGGCGTCGACCGGAC 60.808 66.667 9.46 0.00 42.48 4.79
1573 1672 1.602237 GACGATCAAGAAGGCCCCA 59.398 57.895 0.00 0.00 0.00 4.96
1651 1796 4.064491 GACAGTCACTGCACGCGC 62.064 66.667 5.73 0.00 34.37 6.86
1666 1811 2.894387 CGCAGCAGCTTAGAGCCC 60.894 66.667 0.00 0.00 43.77 5.19
1667 1812 2.894387 GCAGCAGCTTAGAGCCCG 60.894 66.667 0.00 0.00 43.77 6.13
1668 1813 2.202987 CAGCAGCTTAGAGCCCGG 60.203 66.667 0.00 0.00 43.77 5.73
1669 1814 2.685380 AGCAGCTTAGAGCCCGGT 60.685 61.111 0.00 0.00 43.77 5.28
1670 1815 2.512515 GCAGCTTAGAGCCCGGTG 60.513 66.667 0.00 0.00 43.77 4.94
1671 1816 2.982130 CAGCTTAGAGCCCGGTGT 59.018 61.111 0.00 0.00 43.77 4.16
1672 1817 1.448540 CAGCTTAGAGCCCGGTGTG 60.449 63.158 0.00 0.00 43.77 3.82
1679 1824 2.351706 AGAGCCCGGTGTGTTTTTAA 57.648 45.000 0.00 0.00 0.00 1.52
1688 1833 5.275494 CCGGTGTGTTTTTAATCTTTTCGT 58.725 37.500 0.00 0.00 0.00 3.85
1689 1834 5.397240 CCGGTGTGTTTTTAATCTTTTCGTC 59.603 40.000 0.00 0.00 0.00 4.20
1691 1836 5.688621 GGTGTGTTTTTAATCTTTTCGTCCC 59.311 40.000 0.00 0.00 0.00 4.46
1692 1837 6.460537 GGTGTGTTTTTAATCTTTTCGTCCCT 60.461 38.462 0.00 0.00 0.00 4.20
1693 1838 6.416750 GTGTGTTTTTAATCTTTTCGTCCCTG 59.583 38.462 0.00 0.00 0.00 4.45
1696 1841 6.319152 TGTTTTTAATCTTTTCGTCCCTGTCA 59.681 34.615 0.00 0.00 0.00 3.58
1697 1842 6.945938 TTTTAATCTTTTCGTCCCTGTCAA 57.054 33.333 0.00 0.00 0.00 3.18
1700 1847 2.833794 TCTTTTCGTCCCTGTCAAGTG 58.166 47.619 0.00 0.00 0.00 3.16
1706 1853 0.465460 GTCCCTGTCAAGTGTGGCAA 60.465 55.000 0.00 0.00 39.37 4.52
1864 2019 8.033038 TGTTAATTGGTAGAGTACACATCTCAC 58.967 37.037 0.00 0.00 34.73 3.51
1878 2040 1.456296 TCTCACAAGCATGCCACATC 58.544 50.000 15.66 0.00 0.00 3.06
1898 2064 7.761038 ACATCTAGTAATGTGTATCGATCCA 57.239 36.000 0.00 0.00 38.43 3.41
1899 2065 8.178313 ACATCTAGTAATGTGTATCGATCCAA 57.822 34.615 0.00 0.00 38.43 3.53
1904 2070 3.845781 ATGTGTATCGATCCAAAGGCT 57.154 42.857 0.00 0.00 0.00 4.58
1924 2090 3.252458 GCTAATCCAAACAAGTTCGGTGT 59.748 43.478 0.00 0.00 0.00 4.16
1930 2096 3.486209 CCAAACAAGTTCGGTGTGTACAC 60.486 47.826 19.36 19.36 45.72 2.90
1946 2112 2.027073 CACGTGCGGTGCATACACT 61.027 57.895 0.82 1.05 46.57 3.55
1947 2113 1.301401 ACGTGCGGTGCATACACTT 60.301 52.632 12.86 3.34 46.57 3.16
1959 2125 4.984161 GTGCATACACTTGCTGACATTTTT 59.016 37.500 0.00 0.00 43.85 1.94
1969 2135 9.224058 CACTTGCTGACATTTTTAAAATTTTGG 57.776 29.630 13.76 0.00 0.00 3.28
1980 2146 6.625873 TTTAAAATTTTGGGAACATGGCAC 57.374 33.333 13.76 0.00 42.32 5.01
2008 2174 4.687948 ACATTATGCTATGCTCGTGTCATC 59.312 41.667 0.00 0.00 0.00 2.92
2009 2175 4.590850 TTATGCTATGCTCGTGTCATCT 57.409 40.909 0.00 0.00 0.00 2.90
2012 2178 2.123342 GCTATGCTCGTGTCATCTGTC 58.877 52.381 0.00 0.00 0.00 3.51
2013 2179 2.480244 GCTATGCTCGTGTCATCTGTCA 60.480 50.000 0.00 0.00 0.00 3.58
2014 2180 2.975732 ATGCTCGTGTCATCTGTCAT 57.024 45.000 0.00 0.00 0.00 3.06
2015 2181 2.000429 TGCTCGTGTCATCTGTCATG 58.000 50.000 0.00 0.00 0.00 3.07
2016 2182 0.649475 GCTCGTGTCATCTGTCATGC 59.351 55.000 0.00 0.00 0.00 4.06
2019 2185 1.470890 TCGTGTCATCTGTCATGCGTA 59.529 47.619 0.00 0.00 0.00 4.42
2020 2186 1.583856 CGTGTCATCTGTCATGCGTAC 59.416 52.381 0.00 0.00 0.00 3.67
2022 2188 2.345641 GTGTCATCTGTCATGCGTACAC 59.654 50.000 0.00 0.00 0.00 2.90
2023 2189 2.231235 TGTCATCTGTCATGCGTACACT 59.769 45.455 0.00 0.00 0.00 3.55
2025 2191 2.231235 TCATCTGTCATGCGTACACTGT 59.769 45.455 0.00 0.00 0.00 3.55
2026 2192 3.442273 TCATCTGTCATGCGTACACTGTA 59.558 43.478 0.00 0.00 0.00 2.74
2028 2196 2.163613 TCTGTCATGCGTACACTGTAGG 59.836 50.000 4.77 4.77 0.00 3.18
2032 2200 1.203758 CATGCGTACACTGTAGGGTGA 59.796 52.381 10.21 0.00 40.13 4.02
2050 2218 1.819288 TGACCTCTGACTTTCCTAGCG 59.181 52.381 0.00 0.00 0.00 4.26
2052 2220 0.461961 CCTCTGACTTTCCTAGCGGG 59.538 60.000 0.00 0.00 0.00 6.13
2058 2226 1.321074 ACTTTCCTAGCGGGGAGTCG 61.321 60.000 1.34 0.00 36.66 4.18
2077 2245 1.578926 GTGCGGTGCATTTGTGCTA 59.421 52.632 0.00 0.00 41.91 3.49
2139 2313 5.843019 ATCGTAATCATAACCCAATCCCT 57.157 39.130 0.00 0.00 0.00 4.20
2165 2339 5.063944 ACGTACGTACATTGACTCGTCTAAT 59.936 40.000 21.41 0.00 37.66 1.73
2167 2341 6.076247 CGTACGTACATTGACTCGTCTAATTG 60.076 42.308 24.50 0.00 37.66 2.32
2177 2351 1.448893 GTCTAATTGGCACCGGCGA 60.449 57.895 9.30 0.00 42.47 5.54
2193 2367 1.509787 CGAGCGTTGACATTTGGCG 60.510 57.895 0.00 0.00 0.00 5.69
2225 2399 3.601685 CGTTTGGGCTGGGCGTTT 61.602 61.111 0.00 0.00 0.00 3.60
2227 2401 1.594021 GTTTGGGCTGGGCGTTTTG 60.594 57.895 0.00 0.00 0.00 2.44
2229 2403 1.617947 TTTGGGCTGGGCGTTTTGTT 61.618 50.000 0.00 0.00 0.00 2.83
2230 2404 1.617947 TTGGGCTGGGCGTTTTGTTT 61.618 50.000 0.00 0.00 0.00 2.83
2231 2405 1.594021 GGGCTGGGCGTTTTGTTTG 60.594 57.895 0.00 0.00 0.00 2.93
2234 2408 1.215014 GCTGGGCGTTTTGTTTGCTC 61.215 55.000 0.00 0.00 0.00 4.26
2235 2409 0.597377 CTGGGCGTTTTGTTTGCTCC 60.597 55.000 0.00 0.00 0.00 4.70
2236 2410 1.040339 TGGGCGTTTTGTTTGCTCCT 61.040 50.000 0.00 0.00 0.00 3.69
2237 2411 0.318699 GGGCGTTTTGTTTGCTCCTC 60.319 55.000 0.00 0.00 0.00 3.71
2238 2412 0.668535 GGCGTTTTGTTTGCTCCTCT 59.331 50.000 0.00 0.00 0.00 3.69
2239 2413 1.067060 GGCGTTTTGTTTGCTCCTCTT 59.933 47.619 0.00 0.00 0.00 2.85
2240 2414 2.481276 GGCGTTTTGTTTGCTCCTCTTT 60.481 45.455 0.00 0.00 0.00 2.52
2241 2415 3.186909 GCGTTTTGTTTGCTCCTCTTTT 58.813 40.909 0.00 0.00 0.00 2.27
2242 2416 3.616821 GCGTTTTGTTTGCTCCTCTTTTT 59.383 39.130 0.00 0.00 0.00 1.94
2269 2443 8.877808 TTTTTGAAACAGGCAAAATTTTGTTT 57.122 23.077 27.13 20.99 42.68 2.83
2270 2444 7.864307 TTTGAAACAGGCAAAATTTTGTTTG 57.136 28.000 27.13 25.01 42.09 2.93
2279 2453 4.450053 CAAAATTTTGTTTGCTCCTGGGA 58.550 39.130 20.57 0.00 32.10 4.37
2312 2486 1.269257 GGACAGCTCAGGTTTGTTTGC 60.269 52.381 0.00 0.00 0.00 3.68
2326 2500 2.009051 TGTTTGCGAGCGATGATTGAT 58.991 42.857 0.00 0.00 0.00 2.57
2341 2515 1.808411 TTGATGGAAGAACTGCCGTC 58.192 50.000 12.78 12.78 39.99 4.79
2348 2522 3.414700 GAACTGCCGTCTGCCGTG 61.415 66.667 0.00 0.00 37.49 4.94
2349 2523 3.858868 GAACTGCCGTCTGCCGTGA 62.859 63.158 0.00 0.00 37.49 4.35
2350 2524 3.865929 AACTGCCGTCTGCCGTGAG 62.866 63.158 0.00 0.00 37.49 3.51
2356 2530 3.112709 GTCTGCCGTGAGCCGTTC 61.113 66.667 0.00 0.00 42.71 3.95
2357 2531 4.717629 TCTGCCGTGAGCCGTTCG 62.718 66.667 0.00 0.00 42.71 3.95
2359 2533 4.595538 TGCCGTGAGCCGTTCGTT 62.596 61.111 0.00 0.00 42.71 3.85
2360 2534 3.343421 GCCGTGAGCCGTTCGTTT 61.343 61.111 0.00 0.00 34.35 3.60
2361 2535 2.549282 CCGTGAGCCGTTCGTTTG 59.451 61.111 0.00 0.00 33.66 2.93
2362 2536 2.127758 CGTGAGCCGTTCGTTTGC 60.128 61.111 0.00 0.00 0.00 3.68
2363 2537 2.594962 CGTGAGCCGTTCGTTTGCT 61.595 57.895 0.00 0.00 38.24 3.91
2364 2538 1.279527 CGTGAGCCGTTCGTTTGCTA 61.280 55.000 0.00 0.00 34.99 3.49
2365 2539 1.076332 GTGAGCCGTTCGTTTGCTAT 58.924 50.000 0.00 0.00 34.99 2.97
2366 2540 1.075542 TGAGCCGTTCGTTTGCTATG 58.924 50.000 0.00 0.00 34.99 2.23
2367 2541 0.247695 GAGCCGTTCGTTTGCTATGC 60.248 55.000 0.00 0.00 34.99 3.14
2368 2542 1.580132 GCCGTTCGTTTGCTATGCG 60.580 57.895 0.00 0.00 0.00 4.73
2369 2543 1.060308 CCGTTCGTTTGCTATGCGG 59.940 57.895 0.00 0.00 0.00 5.69
2370 2544 1.632046 CCGTTCGTTTGCTATGCGGT 61.632 55.000 0.00 0.00 33.87 5.68
2371 2545 0.518355 CGTTCGTTTGCTATGCGGTG 60.518 55.000 0.00 0.00 0.00 4.94
2372 2546 0.793861 GTTCGTTTGCTATGCGGTGA 59.206 50.000 0.00 0.00 0.00 4.02
2373 2547 1.195900 GTTCGTTTGCTATGCGGTGAA 59.804 47.619 0.00 0.00 0.00 3.18
2374 2548 1.075542 TCGTTTGCTATGCGGTGAAG 58.924 50.000 0.00 0.00 0.00 3.02
2375 2549 1.075542 CGTTTGCTATGCGGTGAAGA 58.924 50.000 0.00 0.00 0.00 2.87
2376 2550 1.665679 CGTTTGCTATGCGGTGAAGAT 59.334 47.619 0.00 0.00 0.00 2.40
2377 2551 2.095853 CGTTTGCTATGCGGTGAAGATT 59.904 45.455 0.00 0.00 0.00 2.40
2378 2552 3.426159 CGTTTGCTATGCGGTGAAGATTT 60.426 43.478 0.00 0.00 0.00 2.17
2379 2553 4.201773 CGTTTGCTATGCGGTGAAGATTTA 60.202 41.667 0.00 0.00 0.00 1.40
2380 2554 5.636837 GTTTGCTATGCGGTGAAGATTTAA 58.363 37.500 0.00 0.00 0.00 1.52
2381 2555 6.265577 GTTTGCTATGCGGTGAAGATTTAAT 58.734 36.000 0.00 0.00 0.00 1.40
2382 2556 7.414436 GTTTGCTATGCGGTGAAGATTTAATA 58.586 34.615 0.00 0.00 0.00 0.98
2383 2557 6.785488 TGCTATGCGGTGAAGATTTAATAG 57.215 37.500 0.00 0.00 0.00 1.73
2384 2558 6.521162 TGCTATGCGGTGAAGATTTAATAGA 58.479 36.000 0.00 0.00 0.00 1.98
2385 2559 7.161404 TGCTATGCGGTGAAGATTTAATAGAT 58.839 34.615 0.00 0.00 0.00 1.98
2386 2560 7.661437 TGCTATGCGGTGAAGATTTAATAGATT 59.339 33.333 0.00 0.00 0.00 2.40
2387 2561 8.507249 GCTATGCGGTGAAGATTTAATAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
2390 2564 9.736023 ATGCGGTGAAGATTTAATAGATTTTTC 57.264 29.630 0.00 0.00 0.00 2.29
2391 2565 8.956426 TGCGGTGAAGATTTAATAGATTTTTCT 58.044 29.630 0.00 0.00 0.00 2.52
2392 2566 9.226345 GCGGTGAAGATTTAATAGATTTTTCTG 57.774 33.333 0.00 0.00 0.00 3.02
2393 2567 9.226345 CGGTGAAGATTTAATAGATTTTTCTGC 57.774 33.333 0.00 0.00 0.00 4.26
2394 2568 9.521503 GGTGAAGATTTAATAGATTTTTCTGCC 57.478 33.333 0.00 0.00 0.00 4.85
2395 2569 9.521503 GTGAAGATTTAATAGATTTTTCTGCCC 57.478 33.333 0.00 0.00 0.00 5.36
2396 2570 9.479549 TGAAGATTTAATAGATTTTTCTGCCCT 57.520 29.630 0.00 0.00 0.00 5.19
2406 2580 9.732130 ATAGATTTTTCTGCCCTATATCTTGTC 57.268 33.333 0.00 0.00 0.00 3.18
2407 2581 7.577303 AGATTTTTCTGCCCTATATCTTGTCA 58.423 34.615 0.00 0.00 0.00 3.58
2408 2582 8.055181 AGATTTTTCTGCCCTATATCTTGTCAA 58.945 33.333 0.00 0.00 0.00 3.18
2409 2583 7.391148 TTTTTCTGCCCTATATCTTGTCAAC 57.609 36.000 0.00 0.00 0.00 3.18
2410 2584 5.692115 TTCTGCCCTATATCTTGTCAACA 57.308 39.130 0.00 0.00 0.00 3.33
2411 2585 5.894298 TCTGCCCTATATCTTGTCAACAT 57.106 39.130 0.00 0.00 0.00 2.71
2412 2586 5.858381 TCTGCCCTATATCTTGTCAACATC 58.142 41.667 0.00 0.00 0.00 3.06
2413 2587 4.631131 TGCCCTATATCTTGTCAACATCG 58.369 43.478 0.00 0.00 0.00 3.84
2414 2588 4.343814 TGCCCTATATCTTGTCAACATCGA 59.656 41.667 0.00 0.00 0.00 3.59
2415 2589 5.012046 TGCCCTATATCTTGTCAACATCGAT 59.988 40.000 0.00 0.00 0.00 3.59
2416 2590 5.578727 GCCCTATATCTTGTCAACATCGATC 59.421 44.000 0.00 0.00 0.00 3.69
2417 2591 6.691508 CCCTATATCTTGTCAACATCGATCA 58.308 40.000 0.00 0.00 0.00 2.92
2418 2592 7.326454 CCCTATATCTTGTCAACATCGATCAT 58.674 38.462 0.00 0.00 0.00 2.45
2419 2593 7.277319 CCCTATATCTTGTCAACATCGATCATG 59.723 40.741 0.00 0.00 38.64 3.07
2420 2594 4.808077 ATCTTGTCAACATCGATCATGC 57.192 40.909 0.00 0.00 35.65 4.06
2421 2595 3.598299 TCTTGTCAACATCGATCATGCA 58.402 40.909 0.00 0.00 35.65 3.96
2422 2596 4.193865 TCTTGTCAACATCGATCATGCAT 58.806 39.130 0.00 0.00 35.65 3.96
2423 2597 4.271776 TCTTGTCAACATCGATCATGCATC 59.728 41.667 0.00 0.00 35.65 3.91
2424 2598 3.533547 TGTCAACATCGATCATGCATCA 58.466 40.909 0.00 0.00 35.65 3.07
2425 2599 3.310501 TGTCAACATCGATCATGCATCAC 59.689 43.478 0.00 0.00 35.65 3.06
2426 2600 2.874086 TCAACATCGATCATGCATCACC 59.126 45.455 0.00 0.00 35.65 4.02
2427 2601 2.876550 CAACATCGATCATGCATCACCT 59.123 45.455 0.00 0.00 35.65 4.00
2428 2602 2.763933 ACATCGATCATGCATCACCTC 58.236 47.619 0.00 0.00 35.65 3.85
2429 2603 1.725164 CATCGATCATGCATCACCTCG 59.275 52.381 0.00 3.31 0.00 4.63
2430 2604 0.746659 TCGATCATGCATCACCTCGT 59.253 50.000 0.00 0.00 0.00 4.18
2431 2605 1.136891 TCGATCATGCATCACCTCGTT 59.863 47.619 0.00 0.00 0.00 3.85
2432 2606 2.360801 TCGATCATGCATCACCTCGTTA 59.639 45.455 0.00 0.00 0.00 3.18
2433 2607 3.123050 CGATCATGCATCACCTCGTTAA 58.877 45.455 0.00 0.00 0.00 2.01
2434 2608 3.183172 CGATCATGCATCACCTCGTTAAG 59.817 47.826 0.00 0.00 0.00 1.85
2443 2617 3.625745 CCTCGTTAAGGCTGGTTGT 57.374 52.632 0.00 0.00 38.67 3.32
2444 2618 2.754946 CCTCGTTAAGGCTGGTTGTA 57.245 50.000 0.00 0.00 38.67 2.41
2445 2619 3.048337 CCTCGTTAAGGCTGGTTGTAA 57.952 47.619 0.00 0.00 38.67 2.41
2446 2620 3.606687 CCTCGTTAAGGCTGGTTGTAAT 58.393 45.455 0.00 0.00 38.67 1.89
2447 2621 3.374058 CCTCGTTAAGGCTGGTTGTAATG 59.626 47.826 0.00 0.00 38.67 1.90
2448 2622 4.250464 CTCGTTAAGGCTGGTTGTAATGA 58.750 43.478 0.00 0.00 0.00 2.57
2449 2623 4.643463 TCGTTAAGGCTGGTTGTAATGAA 58.357 39.130 0.00 0.00 0.00 2.57
2450 2624 5.064558 TCGTTAAGGCTGGTTGTAATGAAA 58.935 37.500 0.00 0.00 0.00 2.69
2451 2625 5.531659 TCGTTAAGGCTGGTTGTAATGAAAA 59.468 36.000 0.00 0.00 0.00 2.29
2452 2626 5.856455 CGTTAAGGCTGGTTGTAATGAAAAG 59.144 40.000 0.00 0.00 0.00 2.27
2453 2627 6.514376 CGTTAAGGCTGGTTGTAATGAAAAGT 60.514 38.462 0.00 0.00 0.00 2.66
2454 2628 7.308109 CGTTAAGGCTGGTTGTAATGAAAAGTA 60.308 37.037 0.00 0.00 0.00 2.24
2455 2629 8.520351 GTTAAGGCTGGTTGTAATGAAAAGTAT 58.480 33.333 0.00 0.00 0.00 2.12
2456 2630 6.759497 AGGCTGGTTGTAATGAAAAGTATC 57.241 37.500 0.00 0.00 0.00 2.24
2457 2631 6.245408 AGGCTGGTTGTAATGAAAAGTATCA 58.755 36.000 0.00 0.00 0.00 2.15
2458 2632 6.891908 AGGCTGGTTGTAATGAAAAGTATCAT 59.108 34.615 0.00 0.00 41.74 2.45
2459 2633 8.052748 AGGCTGGTTGTAATGAAAAGTATCATA 58.947 33.333 0.00 0.00 39.08 2.15
2460 2634 8.850156 GGCTGGTTGTAATGAAAAGTATCATAT 58.150 33.333 0.00 0.00 39.08 1.78
2488 2662 7.295322 AGTATCATGCATATGACACTAGTGT 57.705 36.000 28.27 28.27 46.40 3.55
2489 2663 8.409358 AGTATCATGCATATGACACTAGTGTA 57.591 34.615 27.98 13.80 46.40 2.90
2490 2664 9.029368 AGTATCATGCATATGACACTAGTGTAT 57.971 33.333 27.98 21.12 46.40 2.29
2522 2696 9.901172 ACATCTGTAATGCATGATATCATATGT 57.099 29.630 17.77 15.97 34.26 2.29
2525 2699 9.169592 TCTGTAATGCATGATATCATATGTTGG 57.830 33.333 17.77 6.05 34.26 3.77
2526 2700 8.866970 TGTAATGCATGATATCATATGTTGGT 57.133 30.769 17.77 3.39 34.26 3.67
2527 2701 9.299465 TGTAATGCATGATATCATATGTTGGTT 57.701 29.630 17.77 8.71 34.26 3.67
2528 2702 9.563898 GTAATGCATGATATCATATGTTGGTTG 57.436 33.333 17.77 5.44 34.26 3.77
2529 2703 6.578163 TGCATGATATCATATGTTGGTTGG 57.422 37.500 17.77 3.29 34.26 3.77
2530 2704 6.069994 TGCATGATATCATATGTTGGTTGGT 58.930 36.000 17.77 0.00 34.26 3.67
2531 2705 7.230027 TGCATGATATCATATGTTGGTTGGTA 58.770 34.615 17.77 0.00 34.26 3.25
2532 2706 7.889600 TGCATGATATCATATGTTGGTTGGTAT 59.110 33.333 17.77 0.00 34.26 2.73
2533 2707 8.400947 GCATGATATCATATGTTGGTTGGTATC 58.599 37.037 17.77 0.00 35.14 2.24
2534 2708 9.452287 CATGATATCATATGTTGGTTGGTATCA 57.548 33.333 17.77 7.37 43.73 2.15
2545 2719 9.998106 ATGTTGGTTGGTATCATATAGAACTAC 57.002 33.333 0.00 0.00 0.00 2.73
2546 2720 8.983789 TGTTGGTTGGTATCATATAGAACTACA 58.016 33.333 0.00 0.00 0.00 2.74
2547 2721 9.998106 GTTGGTTGGTATCATATAGAACTACAT 57.002 33.333 0.00 0.00 0.00 2.29
2627 2801 8.363761 TCATGATATGATACTCAAGCATCTCT 57.636 34.615 0.00 0.00 33.59 3.10
2628 2802 8.813951 TCATGATATGATACTCAAGCATCTCTT 58.186 33.333 0.00 0.00 33.59 2.85
2629 2803 9.438228 CATGATATGATACTCAAGCATCTCTTT 57.562 33.333 0.00 0.00 31.27 2.52
2631 2805 9.842775 TGATATGATACTCAAGCATCTCTTTTT 57.157 29.630 0.00 0.00 31.27 1.94
2654 2828 9.651913 TTTTTCATTTAATTTCTATGCCACCTC 57.348 29.630 0.00 0.00 0.00 3.85
2655 2829 7.953005 TTCATTTAATTTCTATGCCACCTCA 57.047 32.000 0.00 0.00 0.00 3.86
2656 2830 8.537728 TTCATTTAATTTCTATGCCACCTCAT 57.462 30.769 0.00 0.00 0.00 2.90
2657 2831 8.169977 TCATTTAATTTCTATGCCACCTCATC 57.830 34.615 0.00 0.00 0.00 2.92
2658 2832 7.779326 TCATTTAATTTCTATGCCACCTCATCA 59.221 33.333 0.00 0.00 0.00 3.07
2659 2833 7.953005 TTTAATTTCTATGCCACCTCATCAA 57.047 32.000 0.00 0.00 0.00 2.57
2660 2834 5.841957 AATTTCTATGCCACCTCATCAAC 57.158 39.130 0.00 0.00 0.00 3.18
2661 2835 3.998913 TTCTATGCCACCTCATCAACA 57.001 42.857 0.00 0.00 0.00 3.33
2662 2836 4.508551 TTCTATGCCACCTCATCAACAT 57.491 40.909 0.00 0.00 0.00 2.71
2663 2837 4.508551 TCTATGCCACCTCATCAACATT 57.491 40.909 0.00 0.00 0.00 2.71
2664 2838 4.201657 TCTATGCCACCTCATCAACATTG 58.798 43.478 0.00 0.00 0.00 2.82
2665 2839 2.291209 TGCCACCTCATCAACATTGT 57.709 45.000 0.00 0.00 0.00 2.71
2666 2840 2.596346 TGCCACCTCATCAACATTGTT 58.404 42.857 0.00 0.00 0.00 2.83
2667 2841 2.964464 TGCCACCTCATCAACATTGTTT 59.036 40.909 0.00 0.00 0.00 2.83
2668 2842 4.148079 TGCCACCTCATCAACATTGTTTA 58.852 39.130 0.00 0.00 0.00 2.01
2669 2843 4.218200 TGCCACCTCATCAACATTGTTTAG 59.782 41.667 0.00 0.00 0.00 1.85
2670 2844 4.218417 GCCACCTCATCAACATTGTTTAGT 59.782 41.667 0.00 0.00 0.00 2.24
2671 2845 5.278957 GCCACCTCATCAACATTGTTTAGTT 60.279 40.000 0.00 0.00 0.00 2.24
2672 2846 6.151691 CCACCTCATCAACATTGTTTAGTTG 58.848 40.000 0.00 0.00 44.84 3.16
2679 2853 6.141560 TCAACATTGTTTAGTTGACATGCA 57.858 33.333 0.00 0.00 46.46 3.96
2680 2854 6.747125 TCAACATTGTTTAGTTGACATGCAT 58.253 32.000 0.00 0.00 46.46 3.96
2681 2855 6.641723 TCAACATTGTTTAGTTGACATGCATG 59.358 34.615 25.09 25.09 46.46 4.06
2682 2856 6.330004 ACATTGTTTAGTTGACATGCATGA 57.670 33.333 32.75 9.00 0.00 3.07
2683 2857 6.927416 ACATTGTTTAGTTGACATGCATGAT 58.073 32.000 32.75 16.80 0.00 2.45
2684 2858 8.054152 ACATTGTTTAGTTGACATGCATGATA 57.946 30.769 32.75 17.43 0.00 2.15
2685 2859 7.970061 ACATTGTTTAGTTGACATGCATGATAC 59.030 33.333 32.75 23.37 0.00 2.24
2686 2860 7.686438 TTGTTTAGTTGACATGCATGATACT 57.314 32.000 32.75 27.82 0.00 2.12
2687 2861 8.785329 TTGTTTAGTTGACATGCATGATACTA 57.215 30.769 32.75 26.93 0.00 1.82
2688 2862 8.196802 TGTTTAGTTGACATGCATGATACTAC 57.803 34.615 32.75 24.38 0.00 2.73
2689 2863 7.279981 TGTTTAGTTGACATGCATGATACTACC 59.720 37.037 32.75 22.50 0.00 3.18
2690 2864 5.620738 AGTTGACATGCATGATACTACCT 57.379 39.130 32.75 14.63 0.00 3.08
2691 2865 6.731292 AGTTGACATGCATGATACTACCTA 57.269 37.500 32.75 6.88 0.00 3.08
2692 2866 7.308450 AGTTGACATGCATGATACTACCTAT 57.692 36.000 32.75 6.24 0.00 2.57
2693 2867 8.422577 AGTTGACATGCATGATACTACCTATA 57.577 34.615 32.75 3.93 0.00 1.31
2694 2868 8.870116 AGTTGACATGCATGATACTACCTATAA 58.130 33.333 32.75 9.07 0.00 0.98
2695 2869 9.658799 GTTGACATGCATGATACTACCTATAAT 57.341 33.333 32.75 4.97 0.00 1.28
2700 2874 9.973450 CATGCATGATACTACCTATAATACTCC 57.027 37.037 22.59 0.00 0.00 3.85
2701 2875 8.534954 TGCATGATACTACCTATAATACTCCC 57.465 38.462 0.00 0.00 0.00 4.30
2702 2876 8.119891 TGCATGATACTACCTATAATACTCCCA 58.880 37.037 0.00 0.00 0.00 4.37
2703 2877 9.148879 GCATGATACTACCTATAATACTCCCAT 57.851 37.037 0.00 0.00 0.00 4.00
2713 2887 9.623000 ACCTATAATACTCCCATTACAAACAAC 57.377 33.333 0.00 0.00 0.00 3.32
2714 2888 9.063615 CCTATAATACTCCCATTACAAACAACC 57.936 37.037 0.00 0.00 0.00 3.77
2715 2889 9.847224 CTATAATACTCCCATTACAAACAACCT 57.153 33.333 0.00 0.00 0.00 3.50
2718 2892 7.933215 ATACTCCCATTACAAACAACCTTAC 57.067 36.000 0.00 0.00 0.00 2.34
2719 2893 5.948842 ACTCCCATTACAAACAACCTTACT 58.051 37.500 0.00 0.00 0.00 2.24
2720 2894 7.081857 ACTCCCATTACAAACAACCTTACTA 57.918 36.000 0.00 0.00 0.00 1.82
2721 2895 6.938596 ACTCCCATTACAAACAACCTTACTAC 59.061 38.462 0.00 0.00 0.00 2.73
2722 2896 7.081857 TCCCATTACAAACAACCTTACTACT 57.918 36.000 0.00 0.00 0.00 2.57
2723 2897 8.204903 TCCCATTACAAACAACCTTACTACTA 57.795 34.615 0.00 0.00 0.00 1.82
2724 2898 8.096414 TCCCATTACAAACAACCTTACTACTAC 58.904 37.037 0.00 0.00 0.00 2.73
2725 2899 8.098912 CCCATTACAAACAACCTTACTACTACT 58.901 37.037 0.00 0.00 0.00 2.57
2726 2900 9.148104 CCATTACAAACAACCTTACTACTACTC 57.852 37.037 0.00 0.00 0.00 2.59
2727 2901 9.148104 CATTACAAACAACCTTACTACTACTCC 57.852 37.037 0.00 0.00 0.00 3.85
2728 2902 6.106648 ACAAACAACCTTACTACTACTCCC 57.893 41.667 0.00 0.00 0.00 4.30
2729 2903 5.842874 ACAAACAACCTTACTACTACTCCCT 59.157 40.000 0.00 0.00 0.00 4.20
2730 2904 6.014755 ACAAACAACCTTACTACTACTCCCTC 60.015 42.308 0.00 0.00 0.00 4.30
2731 2905 4.608269 ACAACCTTACTACTACTCCCTCC 58.392 47.826 0.00 0.00 0.00 4.30
2732 2906 4.294435 ACAACCTTACTACTACTCCCTCCT 59.706 45.833 0.00 0.00 0.00 3.69
2733 2907 5.222505 ACAACCTTACTACTACTCCCTCCTT 60.223 44.000 0.00 0.00 0.00 3.36
2734 2908 5.549229 ACCTTACTACTACTCCCTCCTTT 57.451 43.478 0.00 0.00 0.00 3.11
2735 2909 5.517924 ACCTTACTACTACTCCCTCCTTTC 58.482 45.833 0.00 0.00 0.00 2.62
2736 2910 5.255916 ACCTTACTACTACTCCCTCCTTTCT 59.744 44.000 0.00 0.00 0.00 2.52
2737 2911 6.449696 ACCTTACTACTACTCCCTCCTTTCTA 59.550 42.308 0.00 0.00 0.00 2.10
2738 2912 6.999871 CCTTACTACTACTCCCTCCTTTCTAG 59.000 46.154 0.00 0.00 0.00 2.43
2739 2913 7.366732 CCTTACTACTACTCCCTCCTTTCTAGT 60.367 44.444 0.00 0.00 0.00 2.57
2740 2914 6.405872 ACTACTACTCCCTCCTTTCTAGTT 57.594 41.667 0.00 0.00 0.00 2.24
2741 2915 6.425735 ACTACTACTCCCTCCTTTCTAGTTC 58.574 44.000 0.00 0.00 0.00 3.01
2742 2916 5.272405 ACTACTCCCTCCTTTCTAGTTCA 57.728 43.478 0.00 0.00 0.00 3.18
2743 2917 5.844601 ACTACTCCCTCCTTTCTAGTTCAT 58.155 41.667 0.00 0.00 0.00 2.57
2744 2918 6.982899 ACTACTCCCTCCTTTCTAGTTCATA 58.017 40.000 0.00 0.00 0.00 2.15
2745 2919 7.597327 ACTACTCCCTCCTTTCTAGTTCATAT 58.403 38.462 0.00 0.00 0.00 1.78
2746 2920 6.739331 ACTCCCTCCTTTCTAGTTCATATG 57.261 41.667 0.00 0.00 0.00 1.78
2747 2921 5.604650 ACTCCCTCCTTTCTAGTTCATATGG 59.395 44.000 2.13 0.00 0.00 2.74
2748 2922 5.538877 TCCCTCCTTTCTAGTTCATATGGT 58.461 41.667 2.13 0.00 0.00 3.55
2749 2923 5.970640 TCCCTCCTTTCTAGTTCATATGGTT 59.029 40.000 2.13 0.00 0.00 3.67
2750 2924 6.447084 TCCCTCCTTTCTAGTTCATATGGTTT 59.553 38.462 2.13 0.00 0.00 3.27
2751 2925 6.543831 CCCTCCTTTCTAGTTCATATGGTTTG 59.456 42.308 2.13 0.00 0.00 2.93
2752 2926 7.112779 CCTCCTTTCTAGTTCATATGGTTTGT 58.887 38.462 2.13 0.00 0.00 2.83
2753 2927 7.611855 CCTCCTTTCTAGTTCATATGGTTTGTT 59.388 37.037 2.13 0.00 0.00 2.83
2754 2928 8.934023 TCCTTTCTAGTTCATATGGTTTGTTT 57.066 30.769 2.13 0.00 0.00 2.83
2755 2929 9.010029 TCCTTTCTAGTTCATATGGTTTGTTTC 57.990 33.333 2.13 0.00 0.00 2.78
2756 2930 8.792633 CCTTTCTAGTTCATATGGTTTGTTTCA 58.207 33.333 2.13 0.00 0.00 2.69
2758 2932 9.959749 TTTCTAGTTCATATGGTTTGTTTCAAC 57.040 29.630 2.13 0.00 0.00 3.18
2759 2933 8.918202 TCTAGTTCATATGGTTTGTTTCAACT 57.082 30.769 2.13 4.60 0.00 3.16
2760 2934 9.349713 TCTAGTTCATATGGTTTGTTTCAACTT 57.650 29.630 2.13 0.00 0.00 2.66
2761 2935 9.965824 CTAGTTCATATGGTTTGTTTCAACTTT 57.034 29.630 2.13 0.00 0.00 2.66
2763 2937 9.665719 AGTTCATATGGTTTGTTTCAACTTTTT 57.334 25.926 2.13 0.00 0.00 1.94
2788 2962 8.725405 TTTTGTTTTTCCAATTTAGAGGGTTC 57.275 30.769 0.00 0.00 0.00 3.62
2789 2963 6.079424 TGTTTTTCCAATTTAGAGGGTTCG 57.921 37.500 0.00 0.00 0.00 3.95
2790 2964 5.595133 TGTTTTTCCAATTTAGAGGGTTCGT 59.405 36.000 0.00 0.00 0.00 3.85
2791 2965 5.952526 TTTTCCAATTTAGAGGGTTCGTC 57.047 39.130 0.00 0.00 0.00 4.20
2792 2966 4.903045 TTCCAATTTAGAGGGTTCGTCT 57.097 40.909 0.00 0.00 33.11 4.18
2793 2967 4.467198 TCCAATTTAGAGGGTTCGTCTC 57.533 45.455 0.00 0.00 30.95 3.36
2794 2968 3.197116 TCCAATTTAGAGGGTTCGTCTCC 59.803 47.826 0.00 0.00 30.95 3.71
2795 2969 3.055385 CCAATTTAGAGGGTTCGTCTCCA 60.055 47.826 0.00 0.00 30.95 3.86
2796 2970 4.384208 CCAATTTAGAGGGTTCGTCTCCAT 60.384 45.833 0.00 0.00 30.95 3.41
2797 2971 4.674281 ATTTAGAGGGTTCGTCTCCATC 57.326 45.455 0.00 0.00 36.21 3.51
2798 2972 3.383698 TTAGAGGGTTCGTCTCCATCT 57.616 47.619 12.73 12.73 45.90 2.90
2799 2973 2.239681 AGAGGGTTCGTCTCCATCTT 57.760 50.000 5.11 0.00 42.33 2.40
2800 2974 3.383698 AGAGGGTTCGTCTCCATCTTA 57.616 47.619 5.11 0.00 42.33 2.10
2801 2975 3.917300 AGAGGGTTCGTCTCCATCTTAT 58.083 45.455 5.11 0.00 42.33 1.73
2802 2976 4.290942 AGAGGGTTCGTCTCCATCTTATT 58.709 43.478 5.11 0.00 42.33 1.40
2803 2977 4.717280 AGAGGGTTCGTCTCCATCTTATTT 59.283 41.667 5.11 0.00 42.33 1.40
2804 2978 5.189934 AGAGGGTTCGTCTCCATCTTATTTT 59.810 40.000 5.11 0.00 42.33 1.82
2805 2979 5.816682 AGGGTTCGTCTCCATCTTATTTTT 58.183 37.500 0.00 0.00 0.00 1.94
2806 2980 6.954232 AGGGTTCGTCTCCATCTTATTTTTA 58.046 36.000 0.00 0.00 0.00 1.52
2807 2981 7.399634 AGGGTTCGTCTCCATCTTATTTTTAA 58.600 34.615 0.00 0.00 0.00 1.52
2808 2982 8.053355 AGGGTTCGTCTCCATCTTATTTTTAAT 58.947 33.333 0.00 0.00 0.00 1.40
2809 2983 8.683615 GGGTTCGTCTCCATCTTATTTTTAATT 58.316 33.333 0.00 0.00 0.00 1.40
2813 2987 9.456147 TCGTCTCCATCTTATTTTTAATTTCCA 57.544 29.630 0.00 0.00 0.00 3.53
2818 2992 9.311916 TCCATCTTATTTTTAATTTCCAATGCG 57.688 29.630 0.00 0.00 0.00 4.73
2819 2993 8.063630 CCATCTTATTTTTAATTTCCAATGCGC 58.936 33.333 0.00 0.00 0.00 6.09
2820 2994 8.602328 CATCTTATTTTTAATTTCCAATGCGCA 58.398 29.630 14.96 14.96 0.00 6.09
2821 2995 8.715191 TCTTATTTTTAATTTCCAATGCGCAT 57.285 26.923 19.28 19.28 0.00 4.73
2822 2996 9.160496 TCTTATTTTTAATTTCCAATGCGCATT 57.840 25.926 29.36 29.36 0.00 3.56
2827 3001 9.766277 TTTTTAATTTCCAATGCGCATTAAATC 57.234 25.926 33.44 0.00 32.21 2.17
2828 3002 8.715191 TTTAATTTCCAATGCGCATTAAATCT 57.285 26.923 33.44 23.85 28.78 2.40
2829 3003 8.715191 TTAATTTCCAATGCGCATTAAATCTT 57.285 26.923 33.44 22.65 0.00 2.40
2830 3004 7.614124 AATTTCCAATGCGCATTAAATCTTT 57.386 28.000 33.44 18.85 0.00 2.52
2831 3005 6.406093 TTTCCAATGCGCATTAAATCTTTG 57.594 33.333 33.44 20.36 0.00 2.77
2832 3006 3.864583 TCCAATGCGCATTAAATCTTTGC 59.135 39.130 33.44 0.00 0.00 3.68
2833 3007 3.617706 CCAATGCGCATTAAATCTTTGCA 59.382 39.130 33.44 0.00 36.15 4.08
2834 3008 4.271533 CCAATGCGCATTAAATCTTTGCAT 59.728 37.500 33.44 5.90 42.83 3.96
2835 3009 5.194657 CAATGCGCATTAAATCTTTGCATG 58.805 37.500 33.44 14.73 40.38 4.06
2836 3010 2.604011 TGCGCATTAAATCTTTGCATGC 59.396 40.909 11.82 11.82 36.15 4.06
2837 3011 2.604011 GCGCATTAAATCTTTGCATGCA 59.396 40.909 18.46 18.46 37.72 3.96
2838 3012 3.302221 GCGCATTAAATCTTTGCATGCAG 60.302 43.478 21.50 10.69 37.72 4.41
2839 3013 3.244345 CGCATTAAATCTTTGCATGCAGG 59.756 43.478 21.50 17.21 37.72 4.85
2840 3014 4.435425 GCATTAAATCTTTGCATGCAGGA 58.565 39.130 21.50 21.64 37.75 3.86
2841 3015 4.871557 GCATTAAATCTTTGCATGCAGGAA 59.128 37.500 21.50 12.50 37.75 3.36
2842 3016 5.526111 GCATTAAATCTTTGCATGCAGGAAT 59.474 36.000 21.50 13.16 37.75 3.01
2843 3017 6.037830 GCATTAAATCTTTGCATGCAGGAATT 59.962 34.615 21.50 21.35 37.75 2.17
2844 3018 7.225145 GCATTAAATCTTTGCATGCAGGAATTA 59.775 33.333 21.50 20.45 37.75 1.40
2845 3019 9.100554 CATTAAATCTTTGCATGCAGGAATTAA 57.899 29.630 27.98 27.98 0.00 1.40
2846 3020 9.669887 ATTAAATCTTTGCATGCAGGAATTAAA 57.330 25.926 28.70 18.11 0.00 1.52
2847 3021 7.605410 AAATCTTTGCATGCAGGAATTAAAG 57.395 32.000 21.50 18.51 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.304614 TGATCTAATTACTAGTGACTGGGGC 59.695 44.000 5.39 0.00 0.00 5.80
1 2 6.978674 TGATCTAATTACTAGTGACTGGGG 57.021 41.667 5.39 0.00 0.00 4.96
2 3 8.239038 TCTTGATCTAATTACTAGTGACTGGG 57.761 38.462 5.39 0.00 0.00 4.45
3 4 9.126151 TCTCTTGATCTAATTACTAGTGACTGG 57.874 37.037 5.39 0.00 0.00 4.00
4 5 9.944663 GTCTCTTGATCTAATTACTAGTGACTG 57.055 37.037 5.39 0.00 32.22 3.51
5 6 9.127277 GGTCTCTTGATCTAATTACTAGTGACT 57.873 37.037 5.39 0.00 33.84 3.41
6 7 8.904834 TGGTCTCTTGATCTAATTACTAGTGAC 58.095 37.037 5.39 0.00 33.20 3.67
7 8 8.904834 GTGGTCTCTTGATCTAATTACTAGTGA 58.095 37.037 5.39 0.00 0.00 3.41
8 9 7.858382 CGTGGTCTCTTGATCTAATTACTAGTG 59.142 40.741 5.39 0.00 0.00 2.74
9 10 7.556996 ACGTGGTCTCTTGATCTAATTACTAGT 59.443 37.037 0.00 0.00 0.00 2.57
10 11 7.858382 CACGTGGTCTCTTGATCTAATTACTAG 59.142 40.741 7.95 0.00 0.00 2.57
11 12 7.338703 ACACGTGGTCTCTTGATCTAATTACTA 59.661 37.037 21.57 0.00 0.00 1.82
12 13 6.153000 ACACGTGGTCTCTTGATCTAATTACT 59.847 38.462 21.57 0.00 0.00 2.24
13 14 6.253727 CACACGTGGTCTCTTGATCTAATTAC 59.746 42.308 21.57 0.00 0.00 1.89
14 15 6.330278 CACACGTGGTCTCTTGATCTAATTA 58.670 40.000 21.57 0.00 0.00 1.40
15 16 5.171476 CACACGTGGTCTCTTGATCTAATT 58.829 41.667 21.57 0.00 0.00 1.40
16 17 4.382040 CCACACGTGGTCTCTTGATCTAAT 60.382 45.833 21.57 0.00 45.53 1.73
17 18 3.056821 CCACACGTGGTCTCTTGATCTAA 60.057 47.826 21.57 0.00 45.53 2.10
18 19 2.492088 CCACACGTGGTCTCTTGATCTA 59.508 50.000 21.57 0.00 45.53 1.98
102 105 7.220890 AGATCCTTTTATTAGGGGTAAAGCA 57.779 36.000 0.00 0.00 35.90 3.91
116 119 2.171448 GCAGCTCCTGGAGATCCTTTTA 59.829 50.000 27.53 0.00 36.82 1.52
121 124 2.817056 GGGCAGCTCCTGGAGATCC 61.817 68.421 27.53 21.32 34.39 3.36
130 133 2.827642 GCAGACATGGGCAGCTCC 60.828 66.667 0.00 0.00 0.00 4.70
133 136 1.445716 GAGATGCAGACATGGGCAGC 61.446 60.000 14.20 14.20 46.13 5.25
152 155 5.811399 TGTTGTGCGGATAAAATTAGAGG 57.189 39.130 0.00 0.00 0.00 3.69
214 218 2.029020 GCAAGGGGGTGATTTGAGAAAC 60.029 50.000 0.00 0.00 0.00 2.78
217 221 1.075601 AGCAAGGGGGTGATTTGAGA 58.924 50.000 0.00 0.00 0.00 3.27
297 301 8.083828 ACCTAGCTGTTACTAGTAGTACTACA 57.916 38.462 29.87 17.04 38.39 2.74
298 302 8.956533 AACCTAGCTGTTACTAGTAGTACTAC 57.043 38.462 23.03 23.03 38.39 2.73
303 307 7.332213 GCTAAACCTAGCTGTTACTAGTAGT 57.668 40.000 8.14 8.14 46.12 2.73
320 324 6.403878 TGTTTGTATACTCCTGAGCTAAACC 58.596 40.000 4.17 0.00 0.00 3.27
379 383 2.047061 GTCCCTTTTCCCAGCCTTTTT 58.953 47.619 0.00 0.00 0.00 1.94
380 384 1.062505 TGTCCCTTTTCCCAGCCTTTT 60.063 47.619 0.00 0.00 0.00 2.27
381 385 0.560688 TGTCCCTTTTCCCAGCCTTT 59.439 50.000 0.00 0.00 0.00 3.11
382 386 0.560688 TTGTCCCTTTTCCCAGCCTT 59.439 50.000 0.00 0.00 0.00 4.35
383 387 0.113190 CTTGTCCCTTTTCCCAGCCT 59.887 55.000 0.00 0.00 0.00 4.58
384 388 0.900182 CCTTGTCCCTTTTCCCAGCC 60.900 60.000 0.00 0.00 0.00 4.85
388 392 1.617322 GTGACCTTGTCCCTTTTCCC 58.383 55.000 0.00 0.00 0.00 3.97
404 420 1.770294 AAAACAGGAAAAGCGGGTGA 58.230 45.000 0.00 0.00 0.00 4.02
405 421 2.469826 GAAAAACAGGAAAAGCGGGTG 58.530 47.619 0.00 0.00 0.00 4.61
406 422 1.411246 GGAAAAACAGGAAAAGCGGGT 59.589 47.619 0.00 0.00 0.00 5.28
407 423 1.410882 TGGAAAAACAGGAAAAGCGGG 59.589 47.619 0.00 0.00 0.00 6.13
410 426 4.746611 CAGACATGGAAAAACAGGAAAAGC 59.253 41.667 0.00 0.00 0.00 3.51
435 451 2.808543 CCAGTTACCTGTCTTGTCTTGC 59.191 50.000 0.00 0.00 36.95 4.01
460 476 1.663695 ACCGATAATCAAAGCGTGGG 58.336 50.000 0.00 0.00 0.00 4.61
528 544 3.303938 TCTGTGGCCTTTTTGGAATTGA 58.696 40.909 3.32 0.00 38.35 2.57
533 549 3.576550 GGTTAATCTGTGGCCTTTTTGGA 59.423 43.478 3.32 0.00 38.35 3.53
569 585 4.796312 ACTCAAACGTTTAACATGTTGCAC 59.204 37.500 21.42 15.14 34.59 4.57
618 663 4.942852 TGGCTTGAACTGTGTAAAAATGG 58.057 39.130 0.00 0.00 0.00 3.16
656 701 0.611062 ACCTCGGTAGCAGCAGTACA 60.611 55.000 0.00 0.00 0.00 2.90
658 703 0.611062 ACACCTCGGTAGCAGCAGTA 60.611 55.000 0.00 0.00 0.00 2.74
659 704 1.908793 ACACCTCGGTAGCAGCAGT 60.909 57.895 0.00 0.00 0.00 4.40
678 724 0.673437 TTGTAGCTTGGGCAGTTTGC 59.327 50.000 0.00 0.00 44.08 3.68
774 820 7.765307 ACAAACATGATGAGTATGAATGGAAC 58.235 34.615 0.00 0.00 0.00 3.62
806 852 3.576550 TCAGCAACTGGGCGTATATATGA 59.423 43.478 6.12 0.00 39.27 2.15
815 861 0.314935 AAATGTTCAGCAACTGGGCG 59.685 50.000 0.00 0.00 39.27 6.13
961 1012 3.007614 CGGTGGGTATATAAAGGGACAGG 59.992 52.174 0.00 0.00 0.00 4.00
1033 1091 0.247460 CTCTGCGAGTCAATGGGTGA 59.753 55.000 0.00 0.00 0.00 4.02
1047 1125 0.459411 GACGCCTTTCTCTCCTCTGC 60.459 60.000 0.00 0.00 0.00 4.26
1049 1127 0.322636 TCGACGCCTTTCTCTCCTCT 60.323 55.000 0.00 0.00 0.00 3.69
1050 1128 0.179158 GTCGACGCCTTTCTCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
1051 1129 1.596895 GGTCGACGCCTTTCTCTCCT 61.597 60.000 9.92 0.00 0.00 3.69
1052 1130 1.153804 GGTCGACGCCTTTCTCTCC 60.154 63.158 9.92 0.00 0.00 3.71
1074 1164 0.179062 CTTCTCCTGCTTCATCCCGG 60.179 60.000 0.00 0.00 0.00 5.73
1626 1725 0.031585 GCAGTGACTGTCCGTACACA 59.968 55.000 14.82 0.00 35.97 3.72
1651 1796 2.202987 CCGGGCTCTAAGCTGCTG 60.203 66.667 1.35 0.00 41.99 4.41
1652 1797 2.685380 ACCGGGCTCTAAGCTGCT 60.685 61.111 6.32 0.00 41.99 4.24
1653 1798 2.512515 CACCGGGCTCTAAGCTGC 60.513 66.667 6.32 0.00 41.99 5.25
1654 1799 1.448540 CACACCGGGCTCTAAGCTG 60.449 63.158 6.32 0.00 41.99 4.24
1655 1800 1.481056 AACACACCGGGCTCTAAGCT 61.481 55.000 6.32 0.00 41.99 3.74
1657 1802 1.892209 AAAACACACCGGGCTCTAAG 58.108 50.000 6.32 0.00 0.00 2.18
1659 1804 3.488778 TTAAAAACACACCGGGCTCTA 57.511 42.857 6.32 0.00 0.00 2.43
1660 1805 2.351706 TTAAAAACACACCGGGCTCT 57.648 45.000 6.32 0.00 0.00 4.09
1662 1807 2.871453 AGATTAAAAACACACCGGGCT 58.129 42.857 6.32 0.00 0.00 5.19
1663 1808 3.653539 AAGATTAAAAACACACCGGGC 57.346 42.857 6.32 0.00 0.00 6.13
1664 1809 4.677832 CGAAAAGATTAAAAACACACCGGG 59.322 41.667 6.32 0.00 0.00 5.73
1665 1810 5.275494 ACGAAAAGATTAAAAACACACCGG 58.725 37.500 0.00 0.00 0.00 5.28
1666 1811 5.397240 GGACGAAAAGATTAAAAACACACCG 59.603 40.000 0.00 0.00 0.00 4.94
1667 1812 5.688621 GGGACGAAAAGATTAAAAACACACC 59.311 40.000 0.00 0.00 0.00 4.16
1668 1813 6.416750 CAGGGACGAAAAGATTAAAAACACAC 59.583 38.462 0.00 0.00 0.00 3.82
1669 1814 6.095720 ACAGGGACGAAAAGATTAAAAACACA 59.904 34.615 0.00 0.00 0.00 3.72
1670 1815 6.500910 ACAGGGACGAAAAGATTAAAAACAC 58.499 36.000 0.00 0.00 0.00 3.32
1671 1816 6.319152 TGACAGGGACGAAAAGATTAAAAACA 59.681 34.615 0.00 0.00 0.00 2.83
1672 1817 6.731164 TGACAGGGACGAAAAGATTAAAAAC 58.269 36.000 0.00 0.00 0.00 2.43
1679 1824 3.181454 ACACTTGACAGGGACGAAAAGAT 60.181 43.478 0.00 0.00 0.00 2.40
1688 1833 0.179020 CTTGCCACACTTGACAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
1689 1834 0.179020 TCTTGCCACACTTGACAGGG 60.179 55.000 0.00 0.00 0.00 4.45
1691 1836 1.538512 CCATCTTGCCACACTTGACAG 59.461 52.381 0.00 0.00 0.00 3.51
1692 1837 1.133823 ACCATCTTGCCACACTTGACA 60.134 47.619 0.00 0.00 0.00 3.58
1693 1838 1.609208 ACCATCTTGCCACACTTGAC 58.391 50.000 0.00 0.00 0.00 3.18
1696 1841 2.102925 CCAAAACCATCTTGCCACACTT 59.897 45.455 0.00 0.00 0.00 3.16
1697 1842 1.688197 CCAAAACCATCTTGCCACACT 59.312 47.619 0.00 0.00 0.00 3.55
1700 1847 0.681175 AGCCAAAACCATCTTGCCAC 59.319 50.000 0.00 0.00 0.00 5.01
1810 1965 1.993956 TTTGGGCTGTGTATGCAGTT 58.006 45.000 0.00 0.00 38.65 3.16
1864 2019 4.577693 ACATTACTAGATGTGGCATGCTTG 59.422 41.667 18.92 0.00 38.75 4.01
1878 2040 6.366332 GCCTTTGGATCGATACACATTACTAG 59.634 42.308 10.65 0.00 0.00 2.57
1893 2059 5.185828 ACTTGTTTGGATTAGCCTTTGGATC 59.814 40.000 0.00 0.00 37.63 3.36
1895 2061 4.479158 ACTTGTTTGGATTAGCCTTTGGA 58.521 39.130 0.00 0.00 37.63 3.53
1896 2062 4.871933 ACTTGTTTGGATTAGCCTTTGG 57.128 40.909 0.00 0.00 37.63 3.28
1897 2063 4.917415 CGAACTTGTTTGGATTAGCCTTTG 59.083 41.667 0.00 0.00 37.63 2.77
1898 2064 4.022329 CCGAACTTGTTTGGATTAGCCTTT 60.022 41.667 13.16 0.00 37.63 3.11
1899 2065 3.506067 CCGAACTTGTTTGGATTAGCCTT 59.494 43.478 13.16 0.00 37.63 4.35
1904 2070 4.200874 ACACACCGAACTTGTTTGGATTA 58.799 39.130 22.57 0.00 0.00 1.75
1924 2090 1.009903 GTATGCACCGCACGTGTACA 61.010 55.000 18.38 8.81 43.04 2.90
1930 2096 1.132436 CAAGTGTATGCACCGCACG 59.868 57.895 10.59 0.00 46.35 5.34
1946 2112 8.511604 TCCCAAAATTTTAAAAATGTCAGCAA 57.488 26.923 4.44 0.00 0.00 3.91
1947 2113 8.401709 GTTCCCAAAATTTTAAAAATGTCAGCA 58.598 29.630 4.44 0.00 0.00 4.41
1959 2125 4.310769 CGTGCCATGTTCCCAAAATTTTA 58.689 39.130 2.44 0.00 0.00 1.52
1969 2135 1.308069 ATGTCAGCGTGCCATGTTCC 61.308 55.000 0.00 0.00 0.00 3.62
1980 2146 2.091744 CGAGCATAGCATAATGTCAGCG 59.908 50.000 0.00 0.00 0.00 5.18
2008 2174 2.530177 CCTACAGTGTACGCATGACAG 58.470 52.381 9.48 7.07 0.00 3.51
2009 2175 1.203758 CCCTACAGTGTACGCATGACA 59.796 52.381 9.48 0.00 0.00 3.58
2012 2178 1.203758 TCACCCTACAGTGTACGCATG 59.796 52.381 9.48 6.75 38.91 4.06
2013 2179 1.203994 GTCACCCTACAGTGTACGCAT 59.796 52.381 9.48 0.00 38.91 4.73
2014 2180 0.599558 GTCACCCTACAGTGTACGCA 59.400 55.000 9.48 0.00 38.91 5.24
2015 2181 0.108945 GGTCACCCTACAGTGTACGC 60.109 60.000 0.00 0.00 38.91 4.42
2016 2182 1.471684 GAGGTCACCCTACAGTGTACG 59.528 57.143 0.00 0.00 42.86 3.67
2019 2185 1.147191 TCAGAGGTCACCCTACAGTGT 59.853 52.381 0.00 0.00 42.86 3.55
2020 2186 1.546476 GTCAGAGGTCACCCTACAGTG 59.454 57.143 0.00 0.00 42.86 3.66
2022 2188 2.223803 AGTCAGAGGTCACCCTACAG 57.776 55.000 0.00 0.00 42.86 2.74
2023 2189 2.696526 AAGTCAGAGGTCACCCTACA 57.303 50.000 0.00 0.00 42.86 2.74
2025 2191 2.111972 AGGAAAGTCAGAGGTCACCCTA 59.888 50.000 0.00 0.00 42.86 3.53
2026 2192 1.132689 AGGAAAGTCAGAGGTCACCCT 60.133 52.381 0.00 0.00 46.66 4.34
2028 2196 2.093921 GCTAGGAAAGTCAGAGGTCACC 60.094 54.545 0.00 0.00 0.00 4.02
2032 2200 1.187087 CCGCTAGGAAAGTCAGAGGT 58.813 55.000 0.00 0.00 41.02 3.85
2052 2220 4.760047 ATGCACCGCACCGACTCC 62.760 66.667 0.00 0.00 43.04 3.85
2077 2245 1.990060 CGACACCTCCCAGTCCCAT 60.990 63.158 0.00 0.00 0.00 4.00
2139 2313 4.388773 AGACGAGTCAATGTACGTACGTAA 59.611 41.667 28.34 18.52 39.04 3.18
2177 2351 2.255252 GCGCCAAATGTCAACGCT 59.745 55.556 0.00 0.00 45.71 5.07
2208 2382 3.145422 AAAACGCCCAGCCCAAACG 62.145 57.895 0.00 0.00 0.00 3.60
2212 2386 2.060980 AAACAAAACGCCCAGCCCA 61.061 52.632 0.00 0.00 0.00 5.36
2215 2389 1.215014 GAGCAAACAAAACGCCCAGC 61.215 55.000 0.00 0.00 0.00 4.85
2216 2390 0.597377 GGAGCAAACAAAACGCCCAG 60.597 55.000 0.00 0.00 0.00 4.45
2217 2391 1.040339 AGGAGCAAACAAAACGCCCA 61.040 50.000 0.00 0.00 0.00 5.36
2220 2394 2.492019 AAGAGGAGCAAACAAAACGC 57.508 45.000 0.00 0.00 0.00 4.84
2244 2418 8.758715 CAAACAAAATTTTGCCTGTTTCAAAAA 58.241 25.926 26.94 0.00 43.77 1.94
2245 2419 8.290663 CAAACAAAATTTTGCCTGTTTCAAAA 57.709 26.923 26.94 3.79 44.40 2.44
2257 2431 4.273235 GTCCCAGGAGCAAACAAAATTTTG 59.727 41.667 25.73 25.73 43.62 2.44
2258 2432 4.450976 GTCCCAGGAGCAAACAAAATTTT 58.549 39.130 0.00 0.00 0.00 1.82
2259 2433 3.492482 CGTCCCAGGAGCAAACAAAATTT 60.492 43.478 0.00 0.00 0.00 1.82
2260 2434 2.035832 CGTCCCAGGAGCAAACAAAATT 59.964 45.455 0.00 0.00 0.00 1.82
2261 2435 1.613437 CGTCCCAGGAGCAAACAAAAT 59.387 47.619 0.00 0.00 0.00 1.82
2262 2436 1.028905 CGTCCCAGGAGCAAACAAAA 58.971 50.000 0.00 0.00 0.00 2.44
2263 2437 0.821711 CCGTCCCAGGAGCAAACAAA 60.822 55.000 0.00 0.00 0.00 2.83
2264 2438 1.228124 CCGTCCCAGGAGCAAACAA 60.228 57.895 0.00 0.00 0.00 2.83
2265 2439 2.429930 CCGTCCCAGGAGCAAACA 59.570 61.111 0.00 0.00 0.00 2.83
2266 2440 2.359975 CCCGTCCCAGGAGCAAAC 60.360 66.667 0.00 0.00 0.00 2.93
2267 2441 2.528127 TCCCGTCCCAGGAGCAAA 60.528 61.111 0.00 0.00 0.00 3.68
2268 2442 3.003173 CTCCCGTCCCAGGAGCAA 61.003 66.667 0.00 0.00 44.30 3.91
2272 2446 0.042731 ATTTCTCTCCCGTCCCAGGA 59.957 55.000 0.00 0.00 0.00 3.86
2275 2449 0.252513 TCCATTTCTCTCCCGTCCCA 60.253 55.000 0.00 0.00 0.00 4.37
2279 2453 0.250513 GCTGTCCATTTCTCTCCCGT 59.749 55.000 0.00 0.00 0.00 5.28
2312 2486 2.747436 TCTTCCATCAATCATCGCTCG 58.253 47.619 0.00 0.00 0.00 5.03
2326 2500 1.301716 GCAGACGGCAGTTCTTCCA 60.302 57.895 0.00 0.00 43.97 3.53
2348 2522 0.247695 GCATAGCAAACGAACGGCTC 60.248 55.000 0.00 0.00 39.01 4.70
2349 2523 1.794222 GCATAGCAAACGAACGGCT 59.206 52.632 0.00 0.00 41.51 5.52
2350 2524 1.580132 CGCATAGCAAACGAACGGC 60.580 57.895 0.00 0.00 0.00 5.68
2351 2525 1.060308 CCGCATAGCAAACGAACGG 59.940 57.895 0.00 0.00 0.00 4.44
2352 2526 0.518355 CACCGCATAGCAAACGAACG 60.518 55.000 0.00 0.00 0.00 3.95
2353 2527 0.793861 TCACCGCATAGCAAACGAAC 59.206 50.000 0.00 0.00 0.00 3.95
2354 2528 1.463056 CTTCACCGCATAGCAAACGAA 59.537 47.619 0.00 0.00 0.00 3.85
2355 2529 1.075542 CTTCACCGCATAGCAAACGA 58.924 50.000 0.00 0.00 0.00 3.85
2356 2530 1.075542 TCTTCACCGCATAGCAAACG 58.924 50.000 0.00 0.00 0.00 3.60
2357 2531 3.764885 AATCTTCACCGCATAGCAAAC 57.235 42.857 0.00 0.00 0.00 2.93
2358 2532 5.888691 TTAAATCTTCACCGCATAGCAAA 57.111 34.783 0.00 0.00 0.00 3.68
2359 2533 6.989759 TCTATTAAATCTTCACCGCATAGCAA 59.010 34.615 0.00 0.00 0.00 3.91
2360 2534 6.521162 TCTATTAAATCTTCACCGCATAGCA 58.479 36.000 0.00 0.00 0.00 3.49
2361 2535 7.602517 ATCTATTAAATCTTCACCGCATAGC 57.397 36.000 0.00 0.00 0.00 2.97
2364 2538 9.736023 GAAAAATCTATTAAATCTTCACCGCAT 57.264 29.630 0.00 0.00 0.00 4.73
2365 2539 8.956426 AGAAAAATCTATTAAATCTTCACCGCA 58.044 29.630 0.00 0.00 0.00 5.69
2366 2540 9.226345 CAGAAAAATCTATTAAATCTTCACCGC 57.774 33.333 0.00 0.00 0.00 5.68
2367 2541 9.226345 GCAGAAAAATCTATTAAATCTTCACCG 57.774 33.333 0.00 0.00 0.00 4.94
2368 2542 9.521503 GGCAGAAAAATCTATTAAATCTTCACC 57.478 33.333 0.00 0.00 0.00 4.02
2369 2543 9.521503 GGGCAGAAAAATCTATTAAATCTTCAC 57.478 33.333 0.00 0.00 0.00 3.18
2370 2544 9.479549 AGGGCAGAAAAATCTATTAAATCTTCA 57.520 29.630 0.00 0.00 0.00 3.02
2380 2554 9.732130 GACAAGATATAGGGCAGAAAAATCTAT 57.268 33.333 0.00 0.00 0.00 1.98
2381 2555 8.713971 TGACAAGATATAGGGCAGAAAAATCTA 58.286 33.333 0.00 0.00 0.00 1.98
2382 2556 7.577303 TGACAAGATATAGGGCAGAAAAATCT 58.423 34.615 0.00 0.00 0.00 2.40
2383 2557 7.807977 TGACAAGATATAGGGCAGAAAAATC 57.192 36.000 0.00 0.00 0.00 2.17
2384 2558 7.615365 TGTTGACAAGATATAGGGCAGAAAAAT 59.385 33.333 0.00 0.00 0.00 1.82
2385 2559 6.945435 TGTTGACAAGATATAGGGCAGAAAAA 59.055 34.615 0.00 0.00 0.00 1.94
2386 2560 6.480763 TGTTGACAAGATATAGGGCAGAAAA 58.519 36.000 0.00 0.00 0.00 2.29
2387 2561 6.061022 TGTTGACAAGATATAGGGCAGAAA 57.939 37.500 0.00 0.00 0.00 2.52
2388 2562 5.692115 TGTTGACAAGATATAGGGCAGAA 57.308 39.130 0.00 0.00 0.00 3.02
2389 2563 5.509670 CGATGTTGACAAGATATAGGGCAGA 60.510 44.000 0.00 0.00 0.00 4.26
2390 2564 4.687948 CGATGTTGACAAGATATAGGGCAG 59.312 45.833 0.00 0.00 0.00 4.85
2391 2565 4.343814 TCGATGTTGACAAGATATAGGGCA 59.656 41.667 0.00 0.00 0.00 5.36
2392 2566 4.883083 TCGATGTTGACAAGATATAGGGC 58.117 43.478 0.00 0.00 0.00 5.19
2393 2567 6.691508 TGATCGATGTTGACAAGATATAGGG 58.308 40.000 0.54 0.00 30.97 3.53
2394 2568 7.201504 GCATGATCGATGTTGACAAGATATAGG 60.202 40.741 0.54 3.16 34.14 2.57
2395 2569 7.330208 TGCATGATCGATGTTGACAAGATATAG 59.670 37.037 0.54 0.00 34.14 1.31
2396 2570 7.153985 TGCATGATCGATGTTGACAAGATATA 58.846 34.615 0.54 0.00 34.14 0.86
2397 2571 5.993441 TGCATGATCGATGTTGACAAGATAT 59.007 36.000 0.54 0.00 34.14 1.63
2398 2572 5.358922 TGCATGATCGATGTTGACAAGATA 58.641 37.500 0.54 0.00 34.14 1.98
2399 2573 4.193865 TGCATGATCGATGTTGACAAGAT 58.806 39.130 0.54 0.00 34.14 2.40
2400 2574 3.598299 TGCATGATCGATGTTGACAAGA 58.402 40.909 0.54 0.00 34.14 3.02
2401 2575 4.034742 TGATGCATGATCGATGTTGACAAG 59.965 41.667 2.46 0.00 34.14 3.16
2402 2576 3.940221 TGATGCATGATCGATGTTGACAA 59.060 39.130 2.46 0.00 34.14 3.18
2403 2577 3.310501 GTGATGCATGATCGATGTTGACA 59.689 43.478 2.46 3.55 34.14 3.58
2404 2578 3.303593 GGTGATGCATGATCGATGTTGAC 60.304 47.826 2.46 0.00 34.14 3.18
2405 2579 2.874086 GGTGATGCATGATCGATGTTGA 59.126 45.455 2.46 0.00 34.14 3.18
2406 2580 2.876550 AGGTGATGCATGATCGATGTTG 59.123 45.455 2.46 0.69 34.14 3.33
2407 2581 3.136763 GAGGTGATGCATGATCGATGTT 58.863 45.455 2.46 0.00 34.14 2.71
2408 2582 2.763933 GAGGTGATGCATGATCGATGT 58.236 47.619 2.46 0.00 34.14 3.06
2409 2583 1.725164 CGAGGTGATGCATGATCGATG 59.275 52.381 2.46 0.00 33.17 3.84
2410 2584 1.342496 ACGAGGTGATGCATGATCGAT 59.658 47.619 14.70 0.00 33.17 3.59
2411 2585 0.746659 ACGAGGTGATGCATGATCGA 59.253 50.000 14.70 0.00 33.17 3.59
2412 2586 1.575244 AACGAGGTGATGCATGATCG 58.425 50.000 2.46 5.67 33.17 3.69
2413 2587 3.496130 CCTTAACGAGGTGATGCATGATC 59.504 47.826 2.46 0.00 40.95 2.92
2414 2588 3.470709 CCTTAACGAGGTGATGCATGAT 58.529 45.455 2.46 0.00 40.95 2.45
2415 2589 2.905075 CCTTAACGAGGTGATGCATGA 58.095 47.619 2.46 0.00 40.95 3.07
2426 2600 4.250464 TCATTACAACCAGCCTTAACGAG 58.750 43.478 0.00 0.00 0.00 4.18
2427 2601 4.274602 TCATTACAACCAGCCTTAACGA 57.725 40.909 0.00 0.00 0.00 3.85
2428 2602 5.365403 TTTCATTACAACCAGCCTTAACG 57.635 39.130 0.00 0.00 0.00 3.18
2429 2603 6.745116 ACTTTTCATTACAACCAGCCTTAAC 58.255 36.000 0.00 0.00 0.00 2.01
2430 2604 6.969993 ACTTTTCATTACAACCAGCCTTAA 57.030 33.333 0.00 0.00 0.00 1.85
2431 2605 7.885922 TGATACTTTTCATTACAACCAGCCTTA 59.114 33.333 0.00 0.00 0.00 2.69
2432 2606 6.719370 TGATACTTTTCATTACAACCAGCCTT 59.281 34.615 0.00 0.00 0.00 4.35
2433 2607 6.245408 TGATACTTTTCATTACAACCAGCCT 58.755 36.000 0.00 0.00 0.00 4.58
2434 2608 6.509418 TGATACTTTTCATTACAACCAGCC 57.491 37.500 0.00 0.00 0.00 4.85
2496 2670 9.901172 ACATATGATATCATGCATTACAGATGT 57.099 29.630 25.44 19.37 37.15 3.06
2499 2673 9.169592 CCAACATATGATATCATGCATTACAGA 57.830 33.333 25.44 5.11 37.15 3.41
2500 2674 8.953313 ACCAACATATGATATCATGCATTACAG 58.047 33.333 25.44 11.22 37.15 2.74
2501 2675 8.866970 ACCAACATATGATATCATGCATTACA 57.133 30.769 25.44 6.51 37.15 2.41
2502 2676 9.563898 CAACCAACATATGATATCATGCATTAC 57.436 33.333 25.44 0.00 37.15 1.89
2503 2677 8.741841 CCAACCAACATATGATATCATGCATTA 58.258 33.333 25.44 7.91 37.15 1.90
2504 2678 7.233962 ACCAACCAACATATGATATCATGCATT 59.766 33.333 25.44 14.25 37.15 3.56
2505 2679 6.722590 ACCAACCAACATATGATATCATGCAT 59.277 34.615 25.44 11.19 37.15 3.96
2506 2680 6.069994 ACCAACCAACATATGATATCATGCA 58.930 36.000 25.44 9.34 37.15 3.96
2507 2681 6.579666 ACCAACCAACATATGATATCATGC 57.420 37.500 25.44 0.00 37.15 4.06
2508 2682 9.452287 TGATACCAACCAACATATGATATCATG 57.548 33.333 25.44 15.27 37.15 3.07
2519 2693 9.998106 GTAGTTCTATATGATACCAACCAACAT 57.002 33.333 0.00 0.00 0.00 2.71
2520 2694 8.983789 TGTAGTTCTATATGATACCAACCAACA 58.016 33.333 0.00 0.00 0.00 3.33
2521 2695 9.998106 ATGTAGTTCTATATGATACCAACCAAC 57.002 33.333 0.00 0.00 0.00 3.77
2628 2802 9.651913 GAGGTGGCATAGAAATTAAATGAAAAA 57.348 29.630 0.00 0.00 0.00 1.94
2629 2803 8.811017 TGAGGTGGCATAGAAATTAAATGAAAA 58.189 29.630 0.00 0.00 0.00 2.29
2630 2804 8.359875 TGAGGTGGCATAGAAATTAAATGAAA 57.640 30.769 0.00 0.00 0.00 2.69
2631 2805 7.953005 TGAGGTGGCATAGAAATTAAATGAA 57.047 32.000 0.00 0.00 0.00 2.57
2632 2806 7.779326 TGATGAGGTGGCATAGAAATTAAATGA 59.221 33.333 0.00 0.00 0.00 2.57
2633 2807 7.944061 TGATGAGGTGGCATAGAAATTAAATG 58.056 34.615 0.00 0.00 0.00 2.32
2634 2808 8.416329 GTTGATGAGGTGGCATAGAAATTAAAT 58.584 33.333 0.00 0.00 0.00 1.40
2635 2809 7.395772 TGTTGATGAGGTGGCATAGAAATTAAA 59.604 33.333 0.00 0.00 0.00 1.52
2636 2810 6.889177 TGTTGATGAGGTGGCATAGAAATTAA 59.111 34.615 0.00 0.00 0.00 1.40
2637 2811 6.422333 TGTTGATGAGGTGGCATAGAAATTA 58.578 36.000 0.00 0.00 0.00 1.40
2638 2812 5.263599 TGTTGATGAGGTGGCATAGAAATT 58.736 37.500 0.00 0.00 0.00 1.82
2639 2813 4.858850 TGTTGATGAGGTGGCATAGAAAT 58.141 39.130 0.00 0.00 0.00 2.17
2640 2814 4.299586 TGTTGATGAGGTGGCATAGAAA 57.700 40.909 0.00 0.00 0.00 2.52
2641 2815 3.998913 TGTTGATGAGGTGGCATAGAA 57.001 42.857 0.00 0.00 0.00 2.10
2642 2816 4.201657 CAATGTTGATGAGGTGGCATAGA 58.798 43.478 0.00 0.00 0.00 1.98
2643 2817 3.949754 ACAATGTTGATGAGGTGGCATAG 59.050 43.478 0.00 0.00 0.00 2.23
2644 2818 3.966979 ACAATGTTGATGAGGTGGCATA 58.033 40.909 0.00 0.00 0.00 3.14
2645 2819 2.811410 ACAATGTTGATGAGGTGGCAT 58.189 42.857 0.00 0.00 0.00 4.40
2646 2820 2.291209 ACAATGTTGATGAGGTGGCA 57.709 45.000 0.00 0.00 0.00 4.92
2647 2821 3.665745 AAACAATGTTGATGAGGTGGC 57.334 42.857 0.00 0.00 0.00 5.01
2648 2822 5.964958 ACTAAACAATGTTGATGAGGTGG 57.035 39.130 0.00 0.00 0.00 4.61
2649 2823 6.969366 TCAACTAAACAATGTTGATGAGGTG 58.031 36.000 0.00 4.55 44.89 4.00
2656 2830 6.141560 TGCATGTCAACTAAACAATGTTGA 57.858 33.333 0.00 4.69 46.73 3.18
2657 2831 6.641723 TCATGCATGTCAACTAAACAATGTTG 59.358 34.615 25.43 0.00 43.28 3.33
2658 2832 6.747125 TCATGCATGTCAACTAAACAATGTT 58.253 32.000 25.43 0.00 0.00 2.71
2659 2833 6.330004 TCATGCATGTCAACTAAACAATGT 57.670 33.333 25.43 0.00 0.00 2.71
2660 2834 8.186163 AGTATCATGCATGTCAACTAAACAATG 58.814 33.333 25.43 0.00 0.00 2.82
2661 2835 8.284945 AGTATCATGCATGTCAACTAAACAAT 57.715 30.769 25.43 9.99 0.00 2.71
2662 2836 7.686438 AGTATCATGCATGTCAACTAAACAA 57.314 32.000 25.43 2.66 0.00 2.83
2663 2837 7.279981 GGTAGTATCATGCATGTCAACTAAACA 59.720 37.037 25.43 9.83 0.00 2.83
2664 2838 7.495934 AGGTAGTATCATGCATGTCAACTAAAC 59.504 37.037 25.43 21.50 0.00 2.01
2665 2839 7.564793 AGGTAGTATCATGCATGTCAACTAAA 58.435 34.615 25.43 10.73 0.00 1.85
2666 2840 7.124573 AGGTAGTATCATGCATGTCAACTAA 57.875 36.000 25.43 5.50 0.00 2.24
2667 2841 6.731292 AGGTAGTATCATGCATGTCAACTA 57.269 37.500 25.43 23.80 0.00 2.24
2668 2842 5.620738 AGGTAGTATCATGCATGTCAACT 57.379 39.130 25.43 24.67 0.00 3.16
2669 2843 9.658799 ATTATAGGTAGTATCATGCATGTCAAC 57.341 33.333 25.43 19.94 0.00 3.18
2674 2848 9.973450 GGAGTATTATAGGTAGTATCATGCATG 57.027 37.037 21.07 21.07 0.00 4.06
2675 2849 9.148879 GGGAGTATTATAGGTAGTATCATGCAT 57.851 37.037 0.00 0.00 0.00 3.96
2676 2850 8.119891 TGGGAGTATTATAGGTAGTATCATGCA 58.880 37.037 0.00 0.00 0.00 3.96
2677 2851 8.534954 TGGGAGTATTATAGGTAGTATCATGC 57.465 38.462 0.00 0.00 0.00 4.06
2687 2861 9.623000 GTTGTTTGTAATGGGAGTATTATAGGT 57.377 33.333 0.00 0.00 0.00 3.08
2688 2862 9.063615 GGTTGTTTGTAATGGGAGTATTATAGG 57.936 37.037 0.00 0.00 0.00 2.57
2689 2863 9.847224 AGGTTGTTTGTAATGGGAGTATTATAG 57.153 33.333 0.00 0.00 0.00 1.31
2692 2866 9.452287 GTAAGGTTGTTTGTAATGGGAGTATTA 57.548 33.333 0.00 0.00 0.00 0.98
2693 2867 8.168058 AGTAAGGTTGTTTGTAATGGGAGTATT 58.832 33.333 0.00 0.00 0.00 1.89
2694 2868 7.696017 AGTAAGGTTGTTTGTAATGGGAGTAT 58.304 34.615 0.00 0.00 0.00 2.12
2695 2869 7.081857 AGTAAGGTTGTTTGTAATGGGAGTA 57.918 36.000 0.00 0.00 0.00 2.59
2696 2870 5.948842 AGTAAGGTTGTTTGTAATGGGAGT 58.051 37.500 0.00 0.00 0.00 3.85
2697 2871 7.166167 AGTAGTAAGGTTGTTTGTAATGGGAG 58.834 38.462 0.00 0.00 0.00 4.30
2698 2872 7.081857 AGTAGTAAGGTTGTTTGTAATGGGA 57.918 36.000 0.00 0.00 0.00 4.37
2699 2873 8.098912 AGTAGTAGTAAGGTTGTTTGTAATGGG 58.901 37.037 0.00 0.00 0.00 4.00
2700 2874 9.148104 GAGTAGTAGTAAGGTTGTTTGTAATGG 57.852 37.037 0.00 0.00 0.00 3.16
2701 2875 9.148104 GGAGTAGTAGTAAGGTTGTTTGTAATG 57.852 37.037 0.00 0.00 0.00 1.90
2702 2876 8.316946 GGGAGTAGTAGTAAGGTTGTTTGTAAT 58.683 37.037 0.00 0.00 0.00 1.89
2703 2877 7.510343 AGGGAGTAGTAGTAAGGTTGTTTGTAA 59.490 37.037 0.00 0.00 0.00 2.41
2704 2878 7.012607 AGGGAGTAGTAGTAAGGTTGTTTGTA 58.987 38.462 0.00 0.00 0.00 2.41
2705 2879 5.842874 AGGGAGTAGTAGTAAGGTTGTTTGT 59.157 40.000 0.00 0.00 0.00 2.83
2706 2880 6.356186 AGGGAGTAGTAGTAAGGTTGTTTG 57.644 41.667 0.00 0.00 0.00 2.93
2707 2881 5.483231 GGAGGGAGTAGTAGTAAGGTTGTTT 59.517 44.000 0.00 0.00 0.00 2.83
2708 2882 5.022122 GGAGGGAGTAGTAGTAAGGTTGTT 58.978 45.833 0.00 0.00 0.00 2.83
2709 2883 4.294435 AGGAGGGAGTAGTAGTAAGGTTGT 59.706 45.833 0.00 0.00 0.00 3.32
2710 2884 4.869451 AGGAGGGAGTAGTAGTAAGGTTG 58.131 47.826 0.00 0.00 0.00 3.77
2711 2885 5.549229 AAGGAGGGAGTAGTAGTAAGGTT 57.451 43.478 0.00 0.00 0.00 3.50
2712 2886 5.255916 AGAAAGGAGGGAGTAGTAGTAAGGT 59.744 44.000 0.00 0.00 0.00 3.50
2713 2887 5.768752 AGAAAGGAGGGAGTAGTAGTAAGG 58.231 45.833 0.00 0.00 0.00 2.69
2714 2888 7.576403 ACTAGAAAGGAGGGAGTAGTAGTAAG 58.424 42.308 0.00 0.00 0.00 2.34
2715 2889 7.522249 ACTAGAAAGGAGGGAGTAGTAGTAA 57.478 40.000 0.00 0.00 0.00 2.24
2716 2890 7.183475 TGAACTAGAAAGGAGGGAGTAGTAGTA 59.817 40.741 0.00 0.00 0.00 1.82
2717 2891 6.011805 TGAACTAGAAAGGAGGGAGTAGTAGT 60.012 42.308 0.00 0.00 0.00 2.73
2718 2892 6.424883 TGAACTAGAAAGGAGGGAGTAGTAG 58.575 44.000 0.00 0.00 0.00 2.57
2719 2893 6.398655 TGAACTAGAAAGGAGGGAGTAGTA 57.601 41.667 0.00 0.00 0.00 1.82
2720 2894 5.272405 TGAACTAGAAAGGAGGGAGTAGT 57.728 43.478 0.00 0.00 0.00 2.73
2721 2895 7.039363 CCATATGAACTAGAAAGGAGGGAGTAG 60.039 44.444 3.65 0.00 0.00 2.57
2722 2896 6.782988 CCATATGAACTAGAAAGGAGGGAGTA 59.217 42.308 3.65 0.00 0.00 2.59
2723 2897 5.604650 CCATATGAACTAGAAAGGAGGGAGT 59.395 44.000 3.65 0.00 0.00 3.85
2724 2898 5.604650 ACCATATGAACTAGAAAGGAGGGAG 59.395 44.000 3.65 0.00 0.00 4.30
2725 2899 5.538877 ACCATATGAACTAGAAAGGAGGGA 58.461 41.667 3.65 0.00 0.00 4.20
2726 2900 5.896073 ACCATATGAACTAGAAAGGAGGG 57.104 43.478 3.65 0.00 0.00 4.30
2727 2901 7.112779 ACAAACCATATGAACTAGAAAGGAGG 58.887 38.462 3.65 0.00 0.00 4.30
2728 2902 8.567285 AACAAACCATATGAACTAGAAAGGAG 57.433 34.615 3.65 0.00 0.00 3.69
2729 2903 8.934023 AAACAAACCATATGAACTAGAAAGGA 57.066 30.769 3.65 0.00 0.00 3.36
2730 2904 8.792633 TGAAACAAACCATATGAACTAGAAAGG 58.207 33.333 3.65 0.00 0.00 3.11
2732 2906 9.959749 GTTGAAACAAACCATATGAACTAGAAA 57.040 29.630 3.65 0.00 0.00 2.52
2733 2907 9.349713 AGTTGAAACAAACCATATGAACTAGAA 57.650 29.630 3.65 0.00 0.00 2.10
2734 2908 8.918202 AGTTGAAACAAACCATATGAACTAGA 57.082 30.769 3.65 0.00 0.00 2.43
2735 2909 9.965824 AAAGTTGAAACAAACCATATGAACTAG 57.034 29.630 3.65 0.00 0.00 2.57
2737 2911 9.665719 AAAAAGTTGAAACAAACCATATGAACT 57.334 25.926 3.65 0.00 0.00 3.01
2762 2936 9.168451 GAACCCTCTAAATTGGAAAAACAAAAA 57.832 29.630 0.00 0.00 33.48 1.94
2763 2937 7.492994 CGAACCCTCTAAATTGGAAAAACAAAA 59.507 33.333 0.00 0.00 33.48 2.44
2764 2938 6.981559 CGAACCCTCTAAATTGGAAAAACAAA 59.018 34.615 0.00 0.00 33.48 2.83
2765 2939 6.097129 ACGAACCCTCTAAATTGGAAAAACAA 59.903 34.615 0.00 0.00 34.41 2.83
2766 2940 5.595133 ACGAACCCTCTAAATTGGAAAAACA 59.405 36.000 0.00 0.00 0.00 2.83
2767 2941 6.016527 AGACGAACCCTCTAAATTGGAAAAAC 60.017 38.462 0.00 0.00 0.00 2.43
2768 2942 6.066032 AGACGAACCCTCTAAATTGGAAAAA 58.934 36.000 0.00 0.00 0.00 1.94
2769 2943 5.627135 AGACGAACCCTCTAAATTGGAAAA 58.373 37.500 0.00 0.00 0.00 2.29
2770 2944 5.237236 AGACGAACCCTCTAAATTGGAAA 57.763 39.130 0.00 0.00 0.00 3.13
2771 2945 4.323257 GGAGACGAACCCTCTAAATTGGAA 60.323 45.833 0.00 0.00 0.00 3.53
2772 2946 3.197116 GGAGACGAACCCTCTAAATTGGA 59.803 47.826 0.00 0.00 0.00 3.53
2773 2947 3.055385 TGGAGACGAACCCTCTAAATTGG 60.055 47.826 0.00 0.00 0.00 3.16
2774 2948 4.202245 TGGAGACGAACCCTCTAAATTG 57.798 45.455 0.00 0.00 0.00 2.32
2775 2949 4.717280 AGATGGAGACGAACCCTCTAAATT 59.283 41.667 0.00 0.00 32.29 1.82
2776 2950 4.290942 AGATGGAGACGAACCCTCTAAAT 58.709 43.478 0.00 0.00 32.29 1.40
2777 2951 3.709587 AGATGGAGACGAACCCTCTAAA 58.290 45.455 0.00 0.00 32.29 1.85
2778 2952 3.383698 AGATGGAGACGAACCCTCTAA 57.616 47.619 0.00 0.00 32.29 2.10
2779 2953 3.383698 AAGATGGAGACGAACCCTCTA 57.616 47.619 0.00 0.00 32.75 2.43
2780 2954 2.239681 AAGATGGAGACGAACCCTCT 57.760 50.000 0.00 0.00 34.73 3.69
2781 2955 4.674281 AATAAGATGGAGACGAACCCTC 57.326 45.455 0.00 0.00 0.00 4.30
2782 2956 5.437191 AAAATAAGATGGAGACGAACCCT 57.563 39.130 0.00 0.00 0.00 4.34
2783 2957 7.619964 TTAAAAATAAGATGGAGACGAACCC 57.380 36.000 0.00 0.00 0.00 4.11
2787 2961 9.456147 TGGAAATTAAAAATAAGATGGAGACGA 57.544 29.630 0.00 0.00 0.00 4.20
2792 2966 9.311916 CGCATTGGAAATTAAAAATAAGATGGA 57.688 29.630 0.00 0.00 0.00 3.41
2793 2967 8.063630 GCGCATTGGAAATTAAAAATAAGATGG 58.936 33.333 0.30 0.00 0.00 3.51
2794 2968 8.602328 TGCGCATTGGAAATTAAAAATAAGATG 58.398 29.630 5.66 0.00 0.00 2.90
2795 2969 8.715191 TGCGCATTGGAAATTAAAAATAAGAT 57.285 26.923 5.66 0.00 0.00 2.40
2796 2970 8.715191 ATGCGCATTGGAAATTAAAAATAAGA 57.285 26.923 19.28 0.00 0.00 2.10
2801 2975 9.766277 GATTTAATGCGCATTGGAAATTAAAAA 57.234 25.926 38.81 27.80 36.69 1.94
2802 2976 9.160496 AGATTTAATGCGCATTGGAAATTAAAA 57.840 25.926 38.81 28.41 36.69 1.52
2803 2977 8.715191 AGATTTAATGCGCATTGGAAATTAAA 57.285 26.923 38.81 29.03 37.20 1.52
2804 2978 8.715191 AAGATTTAATGCGCATTGGAAATTAA 57.285 26.923 38.81 23.45 32.50 1.40
2805 2979 8.602328 CAAAGATTTAATGCGCATTGGAAATTA 58.398 29.630 38.81 19.20 32.50 1.40
2806 2980 7.465989 CAAAGATTTAATGCGCATTGGAAATT 58.534 30.769 38.81 26.41 32.50 1.82
2807 2981 6.457257 GCAAAGATTTAATGCGCATTGGAAAT 60.457 34.615 38.81 33.97 32.50 2.17
2808 2982 5.163874 GCAAAGATTTAATGCGCATTGGAAA 60.164 36.000 38.81 31.50 32.50 3.13
2809 2983 4.329528 GCAAAGATTTAATGCGCATTGGAA 59.670 37.500 38.81 31.47 32.50 3.53
2810 2984 3.864583 GCAAAGATTTAATGCGCATTGGA 59.135 39.130 38.81 28.08 32.50 3.53
2811 2985 3.617706 TGCAAAGATTTAATGCGCATTGG 59.382 39.130 38.81 15.89 42.91 3.16
2812 2986 4.843879 TGCAAAGATTTAATGCGCATTG 57.156 36.364 38.81 24.87 42.91 2.82
2813 2987 4.260456 GCATGCAAAGATTTAATGCGCATT 60.260 37.500 35.42 35.42 42.91 3.56
2814 2988 3.246699 GCATGCAAAGATTTAATGCGCAT 59.753 39.130 19.28 19.28 42.91 4.73
2815 2989 2.604011 GCATGCAAAGATTTAATGCGCA 59.396 40.909 14.96 14.96 42.91 6.09
2816 2990 2.604011 TGCATGCAAAGATTTAATGCGC 59.396 40.909 20.30 0.00 42.91 6.09
2817 2991 3.244345 CCTGCATGCAAAGATTTAATGCG 59.756 43.478 22.88 4.78 42.91 4.73
2818 2992 4.435425 TCCTGCATGCAAAGATTTAATGC 58.565 39.130 22.88 13.97 38.70 3.56
2819 2993 7.548196 AATTCCTGCATGCAAAGATTTAATG 57.452 32.000 22.88 5.55 0.00 1.90
2820 2994 9.669887 TTTAATTCCTGCATGCAAAGATTTAAT 57.330 25.926 27.31 15.99 0.00 1.40
2821 2995 9.153721 CTTTAATTCCTGCATGCAAAGATTTAA 57.846 29.630 25.38 25.38 0.00 1.52
2822 2996 8.706492 CTTTAATTCCTGCATGCAAAGATTTA 57.294 30.769 22.88 21.15 0.00 1.40
2823 2997 7.605410 CTTTAATTCCTGCATGCAAAGATTT 57.395 32.000 22.88 22.02 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.