Multiple sequence alignment - TraesCS1A01G331500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G331500 chr1A 100.000 2605 0 0 1 2605 520400046 520402650 0.000000e+00 4811.0
1 TraesCS1A01G331500 chr1A 89.137 1298 91 29 989 2264 520393563 520394832 0.000000e+00 1570.0
2 TraesCS1A01G331500 chr1A 92.491 546 41 0 1714 2259 519819561 519820106 0.000000e+00 782.0
3 TraesCS1A01G331500 chr1A 88.287 572 63 3 1029 1597 519818987 519819557 0.000000e+00 682.0
4 TraesCS1A01G331500 chr1A 87.796 549 67 0 1714 2262 520351195 520350647 0.000000e+00 643.0
5 TraesCS1A01G331500 chr1A 91.457 199 17 0 1065 1263 520355220 520355022 9.180000e-70 274.0
6 TraesCS1A01G331500 chr1B 92.028 715 47 4 901 1613 573568410 573569116 0.000000e+00 996.0
7 TraesCS1A01G331500 chr1B 94.646 579 30 1 1684 2261 573569255 573569833 0.000000e+00 896.0
8 TraesCS1A01G331500 chr1B 88.312 154 15 3 1 154 573566677 573566827 5.730000e-42 182.0
9 TraesCS1A01G331500 chr1B 88.000 150 12 2 27 170 573567516 573567665 3.450000e-39 172.0
10 TraesCS1A01G331500 chr1B 92.793 111 8 0 743 853 573568299 573568409 7.460000e-36 161.0
11 TraesCS1A01G331500 chr1D 94.502 582 32 0 1683 2264 423882786 423883367 0.000000e+00 898.0
12 TraesCS1A01G331500 chr1D 91.042 547 42 3 1714 2259 423644296 423644836 0.000000e+00 732.0
13 TraesCS1A01G331500 chr1D 85.481 613 63 9 993 1597 423643698 423644292 1.320000e-172 616.0
14 TraesCS1A01G331500 chr1D 93.237 414 19 3 896 1300 423881879 423882292 3.710000e-168 601.0
15 TraesCS1A01G331500 chr1D 93.051 331 22 1 1285 1614 423882314 423882644 1.400000e-132 483.0
16 TraesCS1A01G331500 chr1D 80.271 517 73 8 352 853 423881374 423881876 1.910000e-96 363.0
17 TraesCS1A01G331500 chr1D 90.811 185 15 2 2421 2605 423896372 423896554 2.000000e-61 246.0
18 TraesCS1A01G331500 chr1D 90.260 154 12 3 3 156 423880208 423880358 5.690000e-47 198.0
19 TraesCS1A01G331500 chr1D 89.726 146 15 0 27 172 423881044 423881189 1.230000e-43 187.0
20 TraesCS1A01G331500 chr3D 78.982 923 170 15 1344 2262 573871696 573870794 2.220000e-170 608.0
21 TraesCS1A01G331500 chr3D 81.818 561 100 2 1706 2265 573966975 573967534 1.090000e-128 470.0
22 TraesCS1A01G331500 chr3D 87.826 230 28 0 1026 1255 573872478 573872249 1.190000e-68 270.0
23 TraesCS1A01G331500 chr3A 83.571 560 86 5 1706 2262 708932314 708931758 1.070000e-143 520.0
24 TraesCS1A01G331500 chr3A 86.957 230 30 0 1026 1255 708933588 708933359 2.570000e-65 259.0
25 TraesCS1A01G331500 chr3B 87.391 230 29 0 1026 1255 763260429 763260658 5.530000e-67 265.0
26 TraesCS1A01G331500 chr7B 90.196 51 4 1 333 382 369811195 369811245 6.020000e-07 65.8
27 TraesCS1A01G331500 chr7D 85.484 62 8 1 322 382 375301374 375301435 2.160000e-06 63.9
28 TraesCS1A01G331500 chr5B 86.441 59 6 2 323 380 686608262 686608205 2.160000e-06 63.9
29 TraesCS1A01G331500 chr5B 86.441 59 6 2 323 380 686624859 686624802 2.160000e-06 63.9
30 TraesCS1A01G331500 chr5B 86.441 59 6 2 323 380 686666191 686666134 2.160000e-06 63.9
31 TraesCS1A01G331500 chr5B 86.441 59 6 2 323 380 686705389 686705332 2.160000e-06 63.9
32 TraesCS1A01G331500 chr5B 91.489 47 3 1 328 374 686825626 686825581 2.160000e-06 63.9
33 TraesCS1A01G331500 chr5B 95.000 40 1 1 335 374 686893660 686893622 7.780000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G331500 chr1A 520400046 520402650 2604 False 4811.0 4811 100.0000 1 2605 1 chr1A.!!$F2 2604
1 TraesCS1A01G331500 chr1A 520393563 520394832 1269 False 1570.0 1570 89.1370 989 2264 1 chr1A.!!$F1 1275
2 TraesCS1A01G331500 chr1A 519818987 519820106 1119 False 732.0 782 90.3890 1029 2259 2 chr1A.!!$F3 1230
3 TraesCS1A01G331500 chr1A 520350647 520355220 4573 True 458.5 643 89.6265 1065 2262 2 chr1A.!!$R1 1197
4 TraesCS1A01G331500 chr1B 573566677 573569833 3156 False 481.4 996 91.1558 1 2261 5 chr1B.!!$F1 2260
5 TraesCS1A01G331500 chr1D 423643698 423644836 1138 False 674.0 732 88.2615 993 2259 2 chr1D.!!$F2 1266
6 TraesCS1A01G331500 chr1D 423880208 423883367 3159 False 455.0 898 90.1745 3 2264 6 chr1D.!!$F3 2261
7 TraesCS1A01G331500 chr3D 573966975 573967534 559 False 470.0 470 81.8180 1706 2265 1 chr3D.!!$F1 559
8 TraesCS1A01G331500 chr3D 573870794 573872478 1684 True 439.0 608 83.4040 1026 2262 2 chr3D.!!$R1 1236
9 TraesCS1A01G331500 chr3A 708931758 708933588 1830 True 389.5 520 85.2640 1026 2262 2 chr3A.!!$R1 1236

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 1742 0.033208 ATGCCCACCATCGAACCATT 60.033 50.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2351 7155 0.033601 AGGGCAAGAACACACAACCA 60.034 50.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.575783 GGTTCTAAGTTCTAACTACTTCATGAG 57.424 37.037 0.00 0.00 38.57 2.90
48 49 4.720649 TGAGCTATGTTGTACTGGACTC 57.279 45.455 0.00 0.00 0.00 3.36
60 61 2.515288 TGGACTCTGTGTGCAGACA 58.485 52.632 16.69 16.69 45.94 3.41
91 92 1.616994 GGTTGCTAGGGCTTTGTCCAT 60.617 52.381 0.00 0.00 39.59 3.41
92 93 2.171003 GTTGCTAGGGCTTTGTCCATT 58.829 47.619 0.00 0.00 39.59 3.16
102 103 2.879826 CTTTGTCCATTCGATTTGGCC 58.120 47.619 9.50 0.00 34.06 5.36
106 107 2.412937 CATTCGATTTGGCCGGCC 59.587 61.111 39.40 39.40 0.00 6.13
132 133 6.600032 ACATGGCAATAAAATTTGTGATGCAT 59.400 30.769 0.00 0.00 34.14 3.96
157 235 1.205657 CGCCACGTAATCGCTATTGT 58.794 50.000 0.00 0.00 41.18 2.71
171 249 2.931969 GCTATTGTCAATGCCTTTTGCC 59.068 45.455 8.39 0.00 40.16 4.52
172 250 3.617045 GCTATTGTCAATGCCTTTTGCCA 60.617 43.478 8.39 0.00 40.16 4.92
173 251 3.706600 ATTGTCAATGCCTTTTGCCAT 57.293 38.095 0.00 0.00 40.16 4.40
174 252 2.459060 TGTCAATGCCTTTTGCCATG 57.541 45.000 0.00 0.00 40.16 3.66
182 260 1.351076 CCTTTTGCCATGGGACCTTT 58.649 50.000 15.13 0.00 0.00 3.11
214 330 8.918202 AGTCCATTTACTTCTAACATGAACAA 57.082 30.769 0.00 0.00 0.00 2.83
252 368 1.810755 GGAAAACCCACCATTCGTCTC 59.189 52.381 0.00 0.00 34.14 3.36
253 369 1.810755 GAAAACCCACCATTCGTCTCC 59.189 52.381 0.00 0.00 0.00 3.71
257 373 1.141881 CCACCATTCGTCTCCCTCG 59.858 63.158 0.00 0.00 0.00 4.63
260 376 0.747255 ACCATTCGTCTCCCTCGATG 59.253 55.000 0.00 0.00 37.18 3.84
262 378 0.103026 CATTCGTCTCCCTCGATGCA 59.897 55.000 0.00 0.00 37.18 3.96
263 379 1.043816 ATTCGTCTCCCTCGATGCAT 58.956 50.000 0.00 0.00 37.18 3.96
270 386 0.811219 TCCCTCGATGCATGCTTTCG 60.811 55.000 27.07 27.07 0.00 3.46
281 397 0.727398 ATGCTTTCGCCTCGCTTTAC 59.273 50.000 0.00 0.00 34.43 2.01
317 435 7.585867 TGTATAAAGCGCAAACAAGATAAACA 58.414 30.769 11.47 0.00 0.00 2.83
318 436 8.076781 TGTATAAAGCGCAAACAAGATAAACAA 58.923 29.630 11.47 0.00 0.00 2.83
324 442 6.416750 AGCGCAAACAAGATAAACAACTAAAC 59.583 34.615 11.47 0.00 0.00 2.01
330 448 9.801714 AAACAAGATAAACAACTAAACGATACG 57.198 29.630 0.00 0.00 0.00 3.06
347 465 0.831307 ACGAGGTAATGAGGAAGCCC 59.169 55.000 0.00 0.00 0.00 5.19
362 480 3.412386 GAAGCCCTCTTACAAAGCAGAA 58.588 45.455 0.00 0.00 31.48 3.02
364 482 2.373502 AGCCCTCTTACAAAGCAGAACT 59.626 45.455 0.00 0.00 0.00 3.01
366 484 3.057946 GCCCTCTTACAAAGCAGAACTTG 60.058 47.826 0.00 0.00 39.09 3.16
369 487 3.486383 TCTTACAAAGCAGAACTTGGGG 58.514 45.455 0.00 0.00 39.09 4.96
384 503 4.925836 ACTTGGGGTAACGGATAACAAAT 58.074 39.130 0.00 0.00 37.60 2.32
388 507 3.634910 GGGGTAACGGATAACAAATGCAT 59.365 43.478 0.00 0.00 37.60 3.96
399 518 4.829064 AACAAATGCATGTGACTACGTT 57.171 36.364 23.90 3.09 32.81 3.99
411 530 7.222031 GCATGTGACTACGTTAATGACAGATAA 59.778 37.037 0.58 0.00 0.00 1.75
425 544 5.410924 TGACAGATAACGAATGAAGACCTG 58.589 41.667 0.00 0.00 0.00 4.00
439 558 0.238289 GACCTGAACACAATGCCACG 59.762 55.000 0.00 0.00 0.00 4.94
451 570 4.065281 GCCACGACACGCCCTAGT 62.065 66.667 0.00 0.00 0.00 2.57
460 579 1.821136 ACACGCCCTAGTACACCTAAC 59.179 52.381 0.00 0.00 0.00 2.34
465 584 2.694109 GCCCTAGTACACCTAACCTCTG 59.306 54.545 0.00 0.00 0.00 3.35
480 599 0.798776 CTCTGCAACAACGCCCTAAG 59.201 55.000 0.00 0.00 0.00 2.18
481 600 0.394938 TCTGCAACAACGCCCTAAGA 59.605 50.000 0.00 0.00 0.00 2.10
512 632 1.301244 CGAAGTGTCACTGCTGCCT 60.301 57.895 6.18 0.00 0.00 4.75
523 643 2.269241 GCTGCCTAGCCCGAAACT 59.731 61.111 0.00 0.00 44.33 2.66
531 651 0.394938 TAGCCCGAAACTGACAAGCA 59.605 50.000 0.00 0.00 0.00 3.91
538 658 3.438087 CCGAAACTGACAAGCATCTTCAT 59.562 43.478 0.00 0.00 0.00 2.57
540 660 4.436584 CGAAACTGACAAGCATCTTCATCC 60.437 45.833 0.00 0.00 0.00 3.51
550 670 0.181350 ATCTTCATCCGGAACCTGGC 59.819 55.000 9.01 0.00 0.00 4.85
566 686 2.727123 TGGCACAGAGAAAAGAACCA 57.273 45.000 0.00 0.00 0.00 3.67
567 687 3.228188 TGGCACAGAGAAAAGAACCAT 57.772 42.857 0.00 0.00 0.00 3.55
571 691 4.378459 GGCACAGAGAAAAGAACCATAACG 60.378 45.833 0.00 0.00 0.00 3.18
578 700 5.010282 AGAAAAGAACCATAACGGCATTCT 58.990 37.500 0.00 0.00 39.03 2.40
583 705 6.827586 AGAACCATAACGGCATTCTAAAAA 57.172 33.333 0.00 0.00 39.03 1.94
609 731 2.030562 ACCCACACGGAGCTTTCG 59.969 61.111 8.54 8.54 34.64 3.46
612 734 1.164041 CCCACACGGAGCTTTCGTTT 61.164 55.000 12.35 5.10 38.94 3.60
614 736 0.934496 CACACGGAGCTTTCGTTTGA 59.066 50.000 18.53 0.00 39.69 2.69
627 749 2.093890 TCGTTTGATAGCTCACCCGTA 58.906 47.619 0.00 0.00 0.00 4.02
641 763 0.719465 CCCGTAACATCACGAAGCAC 59.281 55.000 0.00 0.00 44.69 4.40
642 764 0.719465 CCGTAACATCACGAAGCACC 59.281 55.000 0.00 0.00 44.69 5.01
653 775 1.150536 GAAGCACCCAGGACAACCA 59.849 57.895 0.00 0.00 38.94 3.67
655 777 2.958578 AAGCACCCAGGACAACCACG 62.959 60.000 0.00 0.00 38.94 4.94
659 1521 1.147376 CCCAGGACAACCACGACAA 59.853 57.895 0.00 0.00 38.94 3.18
675 1537 5.449862 CCACGACAAAAGTTTTCAGATCCAA 60.450 40.000 0.00 0.00 0.00 3.53
698 1560 0.756294 TGTGGGTCGTCACTGTCAAT 59.244 50.000 0.00 0.00 38.40 2.57
699 1561 1.148310 GTGGGTCGTCACTGTCAATG 58.852 55.000 0.00 0.00 34.98 2.82
718 1611 2.124983 CAGAGACCATGCCCACCG 60.125 66.667 0.00 0.00 0.00 4.94
719 1612 4.101448 AGAGACCATGCCCACCGC 62.101 66.667 0.00 0.00 38.31 5.68
740 1633 2.361757 CCACAGTTGCCATGACTCAAAA 59.638 45.455 0.00 0.00 0.00 2.44
741 1634 3.551454 CCACAGTTGCCATGACTCAAAAG 60.551 47.826 0.00 0.00 0.00 2.27
742 1635 3.067180 CACAGTTGCCATGACTCAAAAGT 59.933 43.478 0.00 0.00 38.88 2.66
783 1676 1.209127 CACAAAATGGTCCGACCGC 59.791 57.895 13.02 0.00 42.58 5.68
787 1680 0.322322 AAAATGGTCCGACCGCTGTA 59.678 50.000 13.02 0.00 42.58 2.74
828 1721 5.289193 CCCAAAACAACATTATTGAGATGCG 59.711 40.000 0.00 0.00 0.00 4.73
849 1742 0.033208 ATGCCCACCATCGAACCATT 60.033 50.000 0.00 0.00 0.00 3.16
853 1746 1.612991 CCCACCATCGAACCATTGACA 60.613 52.381 0.00 0.00 0.00 3.58
854 1747 1.739466 CCACCATCGAACCATTGACAG 59.261 52.381 0.00 0.00 0.00 3.51
855 1748 2.426522 CACCATCGAACCATTGACAGT 58.573 47.619 0.00 0.00 0.00 3.55
856 1749 2.813754 CACCATCGAACCATTGACAGTT 59.186 45.455 0.00 0.00 0.00 3.16
857 1750 3.253188 CACCATCGAACCATTGACAGTTT 59.747 43.478 0.00 0.00 0.00 2.66
858 1751 3.888930 ACCATCGAACCATTGACAGTTTT 59.111 39.130 0.00 0.00 0.00 2.43
859 1752 4.340950 ACCATCGAACCATTGACAGTTTTT 59.659 37.500 0.00 0.00 0.00 1.94
860 1753 4.917415 CCATCGAACCATTGACAGTTTTTC 59.083 41.667 0.00 0.00 0.00 2.29
861 1754 5.278463 CCATCGAACCATTGACAGTTTTTCT 60.278 40.000 0.00 0.00 0.00 2.52
862 1755 5.828299 TCGAACCATTGACAGTTTTTCTT 57.172 34.783 0.00 0.00 0.00 2.52
863 1756 5.577835 TCGAACCATTGACAGTTTTTCTTG 58.422 37.500 0.00 0.00 0.00 3.02
864 1757 4.739716 CGAACCATTGACAGTTTTTCTTGG 59.260 41.667 0.00 0.00 0.00 3.61
865 1758 5.449862 CGAACCATTGACAGTTTTTCTTGGA 60.450 40.000 0.00 0.00 0.00 3.53
866 1759 6.484364 AACCATTGACAGTTTTTCTTGGAT 57.516 33.333 0.00 0.00 0.00 3.41
867 1760 7.521423 CGAACCATTGACAGTTTTTCTTGGATA 60.521 37.037 0.00 0.00 0.00 2.59
868 1761 7.595819 ACCATTGACAGTTTTTCTTGGATAA 57.404 32.000 0.00 0.00 0.00 1.75
869 1762 8.017418 ACCATTGACAGTTTTTCTTGGATAAA 57.983 30.769 0.00 0.00 0.00 1.40
870 1763 8.482128 ACCATTGACAGTTTTTCTTGGATAAAA 58.518 29.630 0.00 0.00 0.00 1.52
871 1764 9.492973 CCATTGACAGTTTTTCTTGGATAAAAT 57.507 29.630 0.00 0.00 0.00 1.82
887 1780 9.618890 TTGGATAAAATCTAGATTCTCAACAGG 57.381 33.333 18.19 0.00 0.00 4.00
888 1781 8.213679 TGGATAAAATCTAGATTCTCAACAGGG 58.786 37.037 18.19 0.00 0.00 4.45
889 1782 7.174080 GGATAAAATCTAGATTCTCAACAGGGC 59.826 40.741 18.19 1.25 0.00 5.19
890 1783 3.742433 ATCTAGATTCTCAACAGGGCG 57.258 47.619 0.00 0.00 0.00 6.13
891 1784 1.137086 TCTAGATTCTCAACAGGGCGC 59.863 52.381 0.00 0.00 0.00 6.53
892 1785 0.901827 TAGATTCTCAACAGGGCGCA 59.098 50.000 10.83 0.00 0.00 6.09
894 1787 0.955428 GATTCTCAACAGGGCGCACA 60.955 55.000 14.57 0.00 0.00 4.57
917 1810 1.202348 TCACGACTCAGCACATACCTG 59.798 52.381 0.00 0.00 0.00 4.00
953 1846 3.449227 CGGGGCGACTCAGCACTA 61.449 66.667 0.00 0.00 41.08 2.74
965 1858 1.839994 TCAGCACTAATTCCTGGGAGG 59.160 52.381 0.00 0.00 36.46 4.30
996 1895 4.789075 CGTACACGCACGGGAGGG 62.789 72.222 0.00 0.00 38.26 4.30
1045 1947 3.147595 CCAGGGCCGAGATCACGA 61.148 66.667 14.43 0.00 35.09 4.35
1238 2143 1.081108 GCTCTGCGTGTCGAGACTT 60.081 57.895 11.29 0.00 0.00 3.01
1300 5966 9.201989 TCGTATATATAGAGGGAATCTGCATTT 57.798 33.333 0.00 0.00 39.20 2.32
1320 5989 8.477984 GCATTTGCATTATCCTTTTTCTGTAA 57.522 30.769 0.00 0.00 41.59 2.41
1439 6147 1.063806 CACTGGAGAAGAAGAACGCG 58.936 55.000 3.53 3.53 0.00 6.01
1560 6271 0.161024 GGAGAACGAGCAAACGAACG 59.839 55.000 5.12 0.00 37.03 3.95
1574 6285 3.236391 AACGTGGAGTTCTGGCCA 58.764 55.556 4.71 4.71 39.16 5.36
1618 6329 6.267928 AGGCATTCCTAATACACTACTACTGG 59.732 42.308 0.00 0.00 42.06 4.00
1658 6452 6.369059 AGTCAAATAGTGCACATGCTTATC 57.631 37.500 21.04 3.14 42.66 1.75
1665 6459 2.011947 TGCACATGCTTATCACTCTGC 58.988 47.619 5.31 0.00 42.66 4.26
1672 6466 3.415212 TGCTTATCACTCTGCTTGCTTT 58.585 40.909 0.00 0.00 0.00 3.51
1673 6467 4.578871 TGCTTATCACTCTGCTTGCTTTA 58.421 39.130 0.00 0.00 0.00 1.85
1674 6468 5.003160 TGCTTATCACTCTGCTTGCTTTAA 58.997 37.500 0.00 0.00 0.00 1.52
1675 6469 5.649395 TGCTTATCACTCTGCTTGCTTTAAT 59.351 36.000 0.00 0.00 0.00 1.40
1676 6470 6.151648 TGCTTATCACTCTGCTTGCTTTAATT 59.848 34.615 0.00 0.00 0.00 1.40
1677 6471 6.690528 GCTTATCACTCTGCTTGCTTTAATTC 59.309 38.462 0.00 0.00 0.00 2.17
1678 6472 4.668576 TCACTCTGCTTGCTTTAATTCG 57.331 40.909 0.00 0.00 0.00 3.34
1679 6473 3.436704 TCACTCTGCTTGCTTTAATTCGG 59.563 43.478 0.00 0.00 0.00 4.30
1680 6474 3.436704 CACTCTGCTTGCTTTAATTCGGA 59.563 43.478 0.00 0.00 0.00 4.55
1681 6475 3.686726 ACTCTGCTTGCTTTAATTCGGAG 59.313 43.478 0.00 0.00 33.70 4.63
1717 6521 3.561725 GCTTATAACACAGGGATGCACTC 59.438 47.826 0.00 0.00 0.00 3.51
1759 6563 4.803426 GGTCTCACGAGGCGCCTG 62.803 72.222 38.41 27.27 32.85 4.85
1762 6566 3.826754 CTCACGAGGCGCCTGCTA 61.827 66.667 38.41 15.51 42.25 3.49
2265 7069 0.526524 GACAGCCTCGAGACCAATCG 60.527 60.000 15.71 0.00 44.07 3.34
2266 7070 1.227089 CAGCCTCGAGACCAATCGG 60.227 63.158 15.71 0.00 42.93 4.18
2278 7082 3.866883 ACCAATCGGTTTTGCTAATGG 57.133 42.857 0.00 0.00 46.31 3.16
2279 7083 2.495669 ACCAATCGGTTTTGCTAATGGG 59.504 45.455 0.00 0.00 46.31 4.00
2280 7084 2.495669 CCAATCGGTTTTGCTAATGGGT 59.504 45.455 0.00 0.00 0.00 4.51
2281 7085 3.697045 CCAATCGGTTTTGCTAATGGGTA 59.303 43.478 0.00 0.00 0.00 3.69
2282 7086 4.340950 CCAATCGGTTTTGCTAATGGGTAT 59.659 41.667 0.00 0.00 0.00 2.73
2283 7087 5.163457 CCAATCGGTTTTGCTAATGGGTATT 60.163 40.000 0.00 0.00 0.00 1.89
2284 7088 5.767816 ATCGGTTTTGCTAATGGGTATTC 57.232 39.130 0.00 0.00 0.00 1.75
2285 7089 4.850680 TCGGTTTTGCTAATGGGTATTCT 58.149 39.130 0.00 0.00 0.00 2.40
2286 7090 4.638421 TCGGTTTTGCTAATGGGTATTCTG 59.362 41.667 0.00 0.00 0.00 3.02
2287 7091 4.398044 CGGTTTTGCTAATGGGTATTCTGT 59.602 41.667 0.00 0.00 0.00 3.41
2288 7092 5.105917 CGGTTTTGCTAATGGGTATTCTGTT 60.106 40.000 0.00 0.00 0.00 3.16
2289 7093 6.099341 GGTTTTGCTAATGGGTATTCTGTTG 58.901 40.000 0.00 0.00 0.00 3.33
2290 7094 5.913137 TTTGCTAATGGGTATTCTGTTGG 57.087 39.130 0.00 0.00 0.00 3.77
2291 7095 3.287222 TGCTAATGGGTATTCTGTTGGC 58.713 45.455 0.00 0.00 0.00 4.52
2292 7096 3.053693 TGCTAATGGGTATTCTGTTGGCT 60.054 43.478 0.00 0.00 0.00 4.75
2293 7097 3.954258 GCTAATGGGTATTCTGTTGGCTT 59.046 43.478 0.00 0.00 0.00 4.35
2294 7098 4.402474 GCTAATGGGTATTCTGTTGGCTTT 59.598 41.667 0.00 0.00 0.00 3.51
2295 7099 4.806640 AATGGGTATTCTGTTGGCTTTG 57.193 40.909 0.00 0.00 0.00 2.77
2296 7100 3.237268 TGGGTATTCTGTTGGCTTTGT 57.763 42.857 0.00 0.00 0.00 2.83
2297 7101 3.571590 TGGGTATTCTGTTGGCTTTGTT 58.428 40.909 0.00 0.00 0.00 2.83
2298 7102 3.964031 TGGGTATTCTGTTGGCTTTGTTT 59.036 39.130 0.00 0.00 0.00 2.83
2299 7103 4.407296 TGGGTATTCTGTTGGCTTTGTTTT 59.593 37.500 0.00 0.00 0.00 2.43
2300 7104 5.598830 TGGGTATTCTGTTGGCTTTGTTTTA 59.401 36.000 0.00 0.00 0.00 1.52
2301 7105 6.156519 GGGTATTCTGTTGGCTTTGTTTTAG 58.843 40.000 0.00 0.00 0.00 1.85
2302 7106 6.156519 GGTATTCTGTTGGCTTTGTTTTAGG 58.843 40.000 0.00 0.00 0.00 2.69
2303 7107 5.869649 ATTCTGTTGGCTTTGTTTTAGGT 57.130 34.783 0.00 0.00 0.00 3.08
2304 7108 4.647424 TCTGTTGGCTTTGTTTTAGGTG 57.353 40.909 0.00 0.00 0.00 4.00
2305 7109 4.020543 TCTGTTGGCTTTGTTTTAGGTGT 58.979 39.130 0.00 0.00 0.00 4.16
2306 7110 4.111916 CTGTTGGCTTTGTTTTAGGTGTG 58.888 43.478 0.00 0.00 0.00 3.82
2307 7111 3.511934 TGTTGGCTTTGTTTTAGGTGTGT 59.488 39.130 0.00 0.00 0.00 3.72
2308 7112 4.021016 TGTTGGCTTTGTTTTAGGTGTGTT 60.021 37.500 0.00 0.00 0.00 3.32
2309 7113 4.810191 TGGCTTTGTTTTAGGTGTGTTT 57.190 36.364 0.00 0.00 0.00 2.83
2310 7114 5.153950 TGGCTTTGTTTTAGGTGTGTTTT 57.846 34.783 0.00 0.00 0.00 2.43
2311 7115 4.932200 TGGCTTTGTTTTAGGTGTGTTTTG 59.068 37.500 0.00 0.00 0.00 2.44
2312 7116 4.932799 GGCTTTGTTTTAGGTGTGTTTTGT 59.067 37.500 0.00 0.00 0.00 2.83
2313 7117 5.410132 GGCTTTGTTTTAGGTGTGTTTTGTT 59.590 36.000 0.00 0.00 0.00 2.83
2314 7118 6.072948 GGCTTTGTTTTAGGTGTGTTTTGTTT 60.073 34.615 0.00 0.00 0.00 2.83
2315 7119 6.794636 GCTTTGTTTTAGGTGTGTTTTGTTTG 59.205 34.615 0.00 0.00 0.00 2.93
2316 7120 5.847670 TGTTTTAGGTGTGTTTTGTTTGC 57.152 34.783 0.00 0.00 0.00 3.68
2317 7121 4.691216 TGTTTTAGGTGTGTTTTGTTTGCC 59.309 37.500 0.00 0.00 0.00 4.52
2318 7122 4.810191 TTTAGGTGTGTTTTGTTTGCCT 57.190 36.364 0.00 0.00 0.00 4.75
2319 7123 2.959507 AGGTGTGTTTTGTTTGCCTC 57.040 45.000 0.00 0.00 0.00 4.70
2320 7124 1.134175 AGGTGTGTTTTGTTTGCCTCG 59.866 47.619 0.00 0.00 0.00 4.63
2321 7125 1.555477 GTGTGTTTTGTTTGCCTCGG 58.445 50.000 0.00 0.00 0.00 4.63
2322 7126 0.179124 TGTGTTTTGTTTGCCTCGGC 60.179 50.000 0.00 0.00 42.35 5.54
2323 7127 1.064946 TGTTTTGTTTGCCTCGGCG 59.935 52.632 0.00 0.00 45.51 6.46
2324 7128 1.065109 GTTTTGTTTGCCTCGGCGT 59.935 52.632 6.85 0.00 45.51 5.68
2325 7129 1.064946 TTTTGTTTGCCTCGGCGTG 59.935 52.632 6.85 3.87 45.51 5.34
2326 7130 1.658686 TTTTGTTTGCCTCGGCGTGT 61.659 50.000 6.85 0.00 45.51 4.49
2327 7131 2.329678 TTTGTTTGCCTCGGCGTGTG 62.330 55.000 6.85 0.00 45.51 3.82
2328 7132 4.683334 GTTTGCCTCGGCGTGTGC 62.683 66.667 6.85 10.86 45.51 4.57
2337 7141 4.589700 GGCGTGTGCGTGTGTGTG 62.590 66.667 0.00 0.00 44.10 3.82
2338 7142 4.589700 GCGTGTGCGTGTGTGTGG 62.590 66.667 0.00 0.00 40.81 4.17
2339 7143 3.935872 CGTGTGCGTGTGTGTGGG 61.936 66.667 0.00 0.00 0.00 4.61
2340 7144 2.822255 GTGTGCGTGTGTGTGGGT 60.822 61.111 0.00 0.00 0.00 4.51
2341 7145 2.045829 TGTGCGTGTGTGTGGGTT 60.046 55.556 0.00 0.00 0.00 4.11
2342 7146 2.402572 TGTGCGTGTGTGTGGGTTG 61.403 57.895 0.00 0.00 0.00 3.77
2343 7147 2.045829 TGCGTGTGTGTGGGTTGT 60.046 55.556 0.00 0.00 0.00 3.32
2344 7148 2.402572 TGCGTGTGTGTGGGTTGTG 61.403 57.895 0.00 0.00 0.00 3.33
2345 7149 2.109739 GCGTGTGTGTGGGTTGTGA 61.110 57.895 0.00 0.00 0.00 3.58
2346 7150 1.649390 GCGTGTGTGTGGGTTGTGAA 61.649 55.000 0.00 0.00 0.00 3.18
2347 7151 0.098025 CGTGTGTGTGGGTTGTGAAC 59.902 55.000 0.00 0.00 0.00 3.18
2348 7152 1.459450 GTGTGTGTGGGTTGTGAACT 58.541 50.000 0.00 0.00 0.00 3.01
2349 7153 1.816224 GTGTGTGTGGGTTGTGAACTT 59.184 47.619 0.00 0.00 0.00 2.66
2350 7154 1.815613 TGTGTGTGGGTTGTGAACTTG 59.184 47.619 0.00 0.00 0.00 3.16
2351 7155 1.816224 GTGTGTGGGTTGTGAACTTGT 59.184 47.619 0.00 0.00 0.00 3.16
2352 7156 1.815613 TGTGTGGGTTGTGAACTTGTG 59.184 47.619 0.00 0.00 0.00 3.33
2353 7157 1.134175 GTGTGGGTTGTGAACTTGTGG 59.866 52.381 0.00 0.00 0.00 4.17
2354 7158 1.272203 TGTGGGTTGTGAACTTGTGGT 60.272 47.619 0.00 0.00 0.00 4.16
2355 7159 1.822371 GTGGGTTGTGAACTTGTGGTT 59.178 47.619 0.00 0.00 41.40 3.67
2356 7160 1.821753 TGGGTTGTGAACTTGTGGTTG 59.178 47.619 0.00 0.00 38.41 3.77
2357 7161 1.822371 GGGTTGTGAACTTGTGGTTGT 59.178 47.619 0.00 0.00 38.41 3.32
2358 7162 2.416701 GGGTTGTGAACTTGTGGTTGTG 60.417 50.000 0.00 0.00 38.41 3.33
2359 7163 2.230266 GGTTGTGAACTTGTGGTTGTGT 59.770 45.455 0.00 0.00 38.41 3.72
2360 7164 3.241701 GTTGTGAACTTGTGGTTGTGTG 58.758 45.455 0.00 0.00 38.41 3.82
2361 7165 2.509569 TGTGAACTTGTGGTTGTGTGT 58.490 42.857 0.00 0.00 38.41 3.72
2362 7166 2.887783 TGTGAACTTGTGGTTGTGTGTT 59.112 40.909 0.00 0.00 38.41 3.32
2363 7167 3.057876 TGTGAACTTGTGGTTGTGTGTTC 60.058 43.478 0.00 0.00 38.41 3.18
2364 7168 3.190535 GTGAACTTGTGGTTGTGTGTTCT 59.809 43.478 0.00 0.00 38.41 3.01
2365 7169 3.823873 TGAACTTGTGGTTGTGTGTTCTT 59.176 39.130 0.00 0.00 38.41 2.52
2366 7170 3.848272 ACTTGTGGTTGTGTGTTCTTG 57.152 42.857 0.00 0.00 0.00 3.02
2367 7171 2.094752 ACTTGTGGTTGTGTGTTCTTGC 60.095 45.455 0.00 0.00 0.00 4.01
2368 7172 0.814457 TGTGGTTGTGTGTTCTTGCC 59.186 50.000 0.00 0.00 0.00 4.52
2369 7173 0.102300 GTGGTTGTGTGTTCTTGCCC 59.898 55.000 0.00 0.00 0.00 5.36
2370 7174 0.033601 TGGTTGTGTGTTCTTGCCCT 60.034 50.000 0.00 0.00 0.00 5.19
2371 7175 1.213182 TGGTTGTGTGTTCTTGCCCTA 59.787 47.619 0.00 0.00 0.00 3.53
2372 7176 2.303175 GGTTGTGTGTTCTTGCCCTAA 58.697 47.619 0.00 0.00 0.00 2.69
2373 7177 2.890945 GGTTGTGTGTTCTTGCCCTAAT 59.109 45.455 0.00 0.00 0.00 1.73
2374 7178 3.305335 GGTTGTGTGTTCTTGCCCTAATG 60.305 47.826 0.00 0.00 0.00 1.90
2375 7179 1.885887 TGTGTGTTCTTGCCCTAATGC 59.114 47.619 0.00 0.00 0.00 3.56
2376 7180 1.202348 GTGTGTTCTTGCCCTAATGCC 59.798 52.381 0.00 0.00 0.00 4.40
2377 7181 0.817654 GTGTTCTTGCCCTAATGCCC 59.182 55.000 0.00 0.00 0.00 5.36
2378 7182 0.704076 TGTTCTTGCCCTAATGCCCT 59.296 50.000 0.00 0.00 0.00 5.19
2379 7183 1.106285 GTTCTTGCCCTAATGCCCTG 58.894 55.000 0.00 0.00 0.00 4.45
2380 7184 0.704076 TTCTTGCCCTAATGCCCTGT 59.296 50.000 0.00 0.00 0.00 4.00
2381 7185 0.034186 TCTTGCCCTAATGCCCTGTG 60.034 55.000 0.00 0.00 0.00 3.66
2382 7186 0.323725 CTTGCCCTAATGCCCTGTGT 60.324 55.000 0.00 0.00 0.00 3.72
2383 7187 0.611618 TTGCCCTAATGCCCTGTGTG 60.612 55.000 0.00 0.00 0.00 3.82
2384 7188 2.418083 GCCCTAATGCCCTGTGTGC 61.418 63.158 0.00 0.00 0.00 4.57
2385 7189 2.114670 CCCTAATGCCCTGTGTGCG 61.115 63.158 0.00 0.00 0.00 5.34
2386 7190 2.764314 CCTAATGCCCTGTGTGCGC 61.764 63.158 0.00 0.00 0.00 6.09
2387 7191 3.099619 CTAATGCCCTGTGTGCGCG 62.100 63.158 0.00 0.00 0.00 6.86
2409 7213 3.053399 CGCGCGCGTATATGTCTC 58.947 61.111 42.49 10.04 34.35 3.36
2410 7214 2.426183 CGCGCGCGTATATGTCTCC 61.426 63.158 42.49 9.24 34.35 3.71
2411 7215 2.426183 GCGCGCGTATATGTCTCCG 61.426 63.158 32.35 0.00 0.00 4.63
2412 7216 1.082300 CGCGCGTATATGTCTCCGT 60.082 57.895 24.19 0.00 0.00 4.69
2413 7217 0.164432 CGCGCGTATATGTCTCCGTA 59.836 55.000 24.19 0.00 0.00 4.02
2414 7218 1.201998 CGCGCGTATATGTCTCCGTAT 60.202 52.381 24.19 0.00 0.00 3.06
2415 7219 2.174764 GCGCGTATATGTCTCCGTATG 58.825 52.381 8.43 0.00 0.00 2.39
2416 7220 2.782163 CGCGTATATGTCTCCGTATGG 58.218 52.381 0.00 0.00 0.00 2.74
2417 7221 2.417586 CGCGTATATGTCTCCGTATGGA 59.582 50.000 3.02 3.02 43.88 3.41
2418 7222 3.120095 CGCGTATATGTCTCCGTATGGAA 60.120 47.826 4.92 0.00 45.87 3.53
2419 7223 4.438336 CGCGTATATGTCTCCGTATGGAAT 60.438 45.833 4.92 0.00 45.87 3.01
2420 7224 5.408356 GCGTATATGTCTCCGTATGGAATT 58.592 41.667 4.92 0.00 45.87 2.17
2421 7225 5.515626 GCGTATATGTCTCCGTATGGAATTC 59.484 44.000 4.92 0.00 45.87 2.17
2422 7226 6.617879 CGTATATGTCTCCGTATGGAATTCA 58.382 40.000 7.93 5.17 45.87 2.57
2423 7227 7.258441 CGTATATGTCTCCGTATGGAATTCAT 58.742 38.462 7.93 11.53 45.87 2.57
2424 7228 7.759886 CGTATATGTCTCCGTATGGAATTCATT 59.240 37.037 7.93 0.00 45.87 2.57
2425 7229 9.436957 GTATATGTCTCCGTATGGAATTCATTT 57.563 33.333 7.93 12.13 45.87 2.32
2426 7230 6.867662 ATGTCTCCGTATGGAATTCATTTC 57.132 37.500 7.93 0.00 45.87 2.17
2427 7231 5.989477 TGTCTCCGTATGGAATTCATTTCT 58.011 37.500 7.93 0.00 45.87 2.52
2428 7232 5.817296 TGTCTCCGTATGGAATTCATTTCTG 59.183 40.000 7.93 0.00 45.87 3.02
2429 7233 5.817816 GTCTCCGTATGGAATTCATTTCTGT 59.182 40.000 7.93 0.00 45.87 3.41
2430 7234 6.984474 GTCTCCGTATGGAATTCATTTCTGTA 59.016 38.462 7.93 0.00 45.87 2.74
2431 7235 7.494625 GTCTCCGTATGGAATTCATTTCTGTAA 59.505 37.037 7.93 0.00 45.87 2.41
2432 7236 7.710907 TCTCCGTATGGAATTCATTTCTGTAAG 59.289 37.037 7.93 0.00 45.87 2.34
2433 7237 7.335627 TCCGTATGGAATTCATTTCTGTAAGT 58.664 34.615 7.93 0.00 42.85 2.24
2434 7238 7.279981 TCCGTATGGAATTCATTTCTGTAAGTG 59.720 37.037 7.93 0.00 42.85 3.16
2435 7239 7.279981 CCGTATGGAATTCATTTCTGTAAGTGA 59.720 37.037 7.93 0.00 37.30 3.41
2436 7240 8.830580 CGTATGGAATTCATTTCTGTAAGTGAT 58.169 33.333 7.93 0.00 37.30 3.06
2439 7243 8.272545 TGGAATTCATTTCTGTAAGTGATCTG 57.727 34.615 7.93 0.00 32.12 2.90
2440 7244 7.148188 TGGAATTCATTTCTGTAAGTGATCTGC 60.148 37.037 7.93 0.00 32.12 4.26
2441 7245 7.066766 GGAATTCATTTCTGTAAGTGATCTGCT 59.933 37.037 7.93 0.00 32.12 4.24
2442 7246 7.934855 ATTCATTTCTGTAAGTGATCTGCTT 57.065 32.000 7.91 7.91 32.12 3.91
2443 7247 6.732531 TCATTTCTGTAAGTGATCTGCTTG 57.267 37.500 11.58 0.00 33.76 4.01
2444 7248 6.466812 TCATTTCTGTAAGTGATCTGCTTGA 58.533 36.000 11.58 1.21 33.76 3.02
2445 7249 6.936335 TCATTTCTGTAAGTGATCTGCTTGAA 59.064 34.615 11.58 5.90 33.76 2.69
2446 7250 7.609146 TCATTTCTGTAAGTGATCTGCTTGAAT 59.391 33.333 11.58 4.22 33.76 2.57
2447 7251 6.974932 TTCTGTAAGTGATCTGCTTGAATC 57.025 37.500 11.58 0.00 33.76 2.52
2448 7252 6.041423 TCTGTAAGTGATCTGCTTGAATCA 57.959 37.500 11.58 0.00 33.76 2.57
2449 7253 6.647229 TCTGTAAGTGATCTGCTTGAATCAT 58.353 36.000 11.58 0.00 33.76 2.45
2450 7254 7.785033 TCTGTAAGTGATCTGCTTGAATCATA 58.215 34.615 11.58 0.65 33.76 2.15
2451 7255 8.260114 TCTGTAAGTGATCTGCTTGAATCATAA 58.740 33.333 11.58 0.00 33.76 1.90
2452 7256 8.969260 TGTAAGTGATCTGCTTGAATCATAAT 57.031 30.769 11.58 0.00 0.00 1.28
2482 7286 8.786826 TTAAAGTTGCACTACTATATGCTTGT 57.213 30.769 0.00 0.00 42.55 3.16
2483 7287 7.687941 AAAGTTGCACTACTATATGCTTGTT 57.312 32.000 0.00 0.00 42.55 2.83
2484 7288 7.687941 AAGTTGCACTACTATATGCTTGTTT 57.312 32.000 0.00 0.00 42.55 2.83
2485 7289 7.308782 AGTTGCACTACTATATGCTTGTTTC 57.691 36.000 0.00 0.00 42.55 2.78
2486 7290 7.106239 AGTTGCACTACTATATGCTTGTTTCT 58.894 34.615 0.00 0.00 42.55 2.52
2487 7291 7.607991 AGTTGCACTACTATATGCTTGTTTCTT 59.392 33.333 0.00 0.00 42.55 2.52
2488 7292 7.307493 TGCACTACTATATGCTTGTTTCTTG 57.693 36.000 0.00 0.00 42.55 3.02
2489 7293 6.183360 TGCACTACTATATGCTTGTTTCTTGC 60.183 38.462 0.00 0.00 42.55 4.01
2490 7294 6.183360 GCACTACTATATGCTTGTTTCTTGCA 60.183 38.462 0.00 0.00 38.84 4.08
2492 7296 8.400947 CACTACTATATGCTTGTTTCTTGCATT 58.599 33.333 5.02 0.00 43.85 3.56
2493 7297 8.960591 ACTACTATATGCTTGTTTCTTGCATTT 58.039 29.630 5.02 0.84 43.85 2.32
2494 7298 9.793252 CTACTATATGCTTGTTTCTTGCATTTT 57.207 29.630 5.02 0.00 43.85 1.82
2496 7300 8.928733 ACTATATGCTTGTTTCTTGCATTTTTG 58.071 29.630 5.02 0.00 43.85 2.44
2497 7301 4.879104 TGCTTGTTTCTTGCATTTTTGG 57.121 36.364 0.00 0.00 0.00 3.28
2498 7302 4.511527 TGCTTGTTTCTTGCATTTTTGGA 58.488 34.783 0.00 0.00 0.00 3.53
2499 7303 4.940046 TGCTTGTTTCTTGCATTTTTGGAA 59.060 33.333 0.00 0.00 0.00 3.53
2500 7304 5.589452 TGCTTGTTTCTTGCATTTTTGGAAT 59.411 32.000 0.00 0.00 0.00 3.01
2501 7305 6.765036 TGCTTGTTTCTTGCATTTTTGGAATA 59.235 30.769 0.00 0.00 0.00 1.75
2502 7306 7.041916 TGCTTGTTTCTTGCATTTTTGGAATAG 60.042 33.333 0.00 0.00 0.00 1.73
2503 7307 7.041848 GCTTGTTTCTTGCATTTTTGGAATAGT 60.042 33.333 0.00 0.00 0.00 2.12
2504 7308 7.712264 TGTTTCTTGCATTTTTGGAATAGTG 57.288 32.000 0.00 0.00 0.00 2.74
2505 7309 6.705381 TGTTTCTTGCATTTTTGGAATAGTGG 59.295 34.615 0.00 0.00 0.00 4.00
2506 7310 6.662865 TTCTTGCATTTTTGGAATAGTGGA 57.337 33.333 0.00 0.00 0.00 4.02
2507 7311 6.662865 TCTTGCATTTTTGGAATAGTGGAA 57.337 33.333 0.00 0.00 0.00 3.53
2508 7312 6.690530 TCTTGCATTTTTGGAATAGTGGAAG 58.309 36.000 0.00 0.00 36.68 3.46
2509 7313 6.267471 TCTTGCATTTTTGGAATAGTGGAAGT 59.733 34.615 0.00 0.00 36.70 3.01
2510 7314 6.418057 TGCATTTTTGGAATAGTGGAAGTT 57.582 33.333 0.00 0.00 0.00 2.66
2511 7315 6.454795 TGCATTTTTGGAATAGTGGAAGTTC 58.545 36.000 0.00 0.00 0.00 3.01
2512 7316 6.267471 TGCATTTTTGGAATAGTGGAAGTTCT 59.733 34.615 2.25 0.00 0.00 3.01
2513 7317 7.450014 TGCATTTTTGGAATAGTGGAAGTTCTA 59.550 33.333 2.25 0.00 0.00 2.10
2514 7318 8.470002 GCATTTTTGGAATAGTGGAAGTTCTAT 58.530 33.333 2.25 0.00 0.00 1.98
2587 7391 8.776470 TGTTTGTTCTTCTTTTAGGTAATACCG 58.224 33.333 3.47 0.00 44.90 4.02
2588 7392 7.910441 TTGTTCTTCTTTTAGGTAATACCGG 57.090 36.000 0.00 0.00 44.90 5.28
2589 7393 7.008021 TGTTCTTCTTTTAGGTAATACCGGT 57.992 36.000 13.98 13.98 44.90 5.28
2590 7394 8.133024 TGTTCTTCTTTTAGGTAATACCGGTA 57.867 34.615 18.46 18.46 44.90 4.02
2591 7395 8.034804 TGTTCTTCTTTTAGGTAATACCGGTAC 58.965 37.037 18.55 7.00 44.90 3.34
2592 7396 7.716799 TCTTCTTTTAGGTAATACCGGTACA 57.283 36.000 18.55 4.88 44.90 2.90
2593 7397 7.547227 TCTTCTTTTAGGTAATACCGGTACAC 58.453 38.462 18.55 17.27 44.90 2.90
2594 7398 7.397192 TCTTCTTTTAGGTAATACCGGTACACT 59.603 37.037 18.55 14.49 44.90 3.55
2595 7399 7.100458 TCTTTTAGGTAATACCGGTACACTC 57.900 40.000 18.55 11.48 44.90 3.51
2596 7400 6.663093 TCTTTTAGGTAATACCGGTACACTCA 59.337 38.462 18.55 7.22 44.90 3.41
2597 7401 7.342799 TCTTTTAGGTAATACCGGTACACTCAT 59.657 37.037 18.55 8.24 44.90 2.90
2598 7402 7.422465 TTTAGGTAATACCGGTACACTCATT 57.578 36.000 18.55 9.93 44.90 2.57
2599 7403 5.945144 AGGTAATACCGGTACACTCATTT 57.055 39.130 18.55 8.05 44.90 2.32
2600 7404 5.910614 AGGTAATACCGGTACACTCATTTC 58.089 41.667 18.55 5.05 44.90 2.17
2601 7405 5.422970 AGGTAATACCGGTACACTCATTTCA 59.577 40.000 18.55 0.00 44.90 2.69
2602 7406 6.099269 AGGTAATACCGGTACACTCATTTCAT 59.901 38.462 18.55 0.00 44.90 2.57
2603 7407 6.764560 GGTAATACCGGTACACTCATTTCATT 59.235 38.462 18.55 6.25 0.00 2.57
2604 7408 7.927629 GGTAATACCGGTACACTCATTTCATTA 59.072 37.037 18.55 5.19 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.582657 AGCTCATGAAGTAGTTAGAACTTAGA 57.417 34.615 0.00 0.00 40.37 2.10
30 31 4.177026 CACAGAGTCCAGTACAACATAGC 58.823 47.826 0.00 0.00 0.00 2.97
48 49 2.880268 TCTCCAAAATGTCTGCACACAG 59.120 45.455 0.29 0.00 45.95 3.66
58 59 1.981256 AGCAACCGTCTCCAAAATGT 58.019 45.000 0.00 0.00 0.00 2.71
60 61 2.618045 CCCTAGCAACCGTCTCCAAAAT 60.618 50.000 0.00 0.00 0.00 1.82
106 107 6.128254 TGCATCACAAATTTTATTGCCATGTG 60.128 34.615 8.74 0.00 38.36 3.21
132 133 2.656137 CGATTACGTGGCGCACTTA 58.344 52.632 10.83 0.72 31.34 2.24
138 216 1.189446 GACAATAGCGATTACGTGGCG 59.811 52.381 0.00 0.00 41.98 5.69
144 222 5.424121 AAGGCATTGACAATAGCGATTAC 57.576 39.130 0.00 0.00 0.00 1.89
189 267 8.918202 TTGTTCATGTTAGAAGTAAATGGACT 57.082 30.769 0.00 0.00 29.66 3.85
190 268 9.559958 CATTGTTCATGTTAGAAGTAAATGGAC 57.440 33.333 0.00 0.00 0.00 4.02
194 310 9.077885 ACACCATTGTTCATGTTAGAAGTAAAT 57.922 29.630 0.00 0.00 28.43 1.40
227 343 4.412843 ACGAATGGTGGGTTTTCCTTTAT 58.587 39.130 0.00 0.00 40.46 1.40
230 346 2.158519 AGACGAATGGTGGGTTTTCCTT 60.159 45.455 0.00 0.00 40.46 3.36
247 363 1.953138 GCATGCATCGAGGGAGACG 60.953 63.158 14.21 0.00 0.00 4.18
252 368 1.645455 CGAAAGCATGCATCGAGGG 59.355 57.895 30.54 9.89 38.82 4.30
287 405 7.938563 TCTTGTTTGCGCTTTATACATTTTT 57.061 28.000 9.73 0.00 0.00 1.94
291 409 8.240682 TGTTTATCTTGTTTGCGCTTTATACAT 58.759 29.630 9.73 0.00 0.00 2.29
293 411 8.363029 GTTGTTTATCTTGTTTGCGCTTTATAC 58.637 33.333 9.73 0.00 0.00 1.47
296 414 6.500041 AGTTGTTTATCTTGTTTGCGCTTTA 58.500 32.000 9.73 0.00 0.00 1.85
302 420 7.901874 TCGTTTAGTTGTTTATCTTGTTTGC 57.098 32.000 0.00 0.00 0.00 3.68
306 424 8.746922 TCGTATCGTTTAGTTGTTTATCTTGT 57.253 30.769 0.00 0.00 0.00 3.16
317 435 6.319658 TCCTCATTACCTCGTATCGTTTAGTT 59.680 38.462 0.00 0.00 0.00 2.24
318 436 5.824624 TCCTCATTACCTCGTATCGTTTAGT 59.175 40.000 0.00 0.00 0.00 2.24
324 442 3.566523 GCTTCCTCATTACCTCGTATCG 58.433 50.000 0.00 0.00 0.00 2.92
347 465 3.503748 CCCCAAGTTCTGCTTTGTAAGAG 59.496 47.826 0.00 0.00 34.69 2.85
350 468 3.306472 ACCCCAAGTTCTGCTTTGTAA 57.694 42.857 0.00 0.00 34.69 2.41
362 480 4.370094 TTTGTTATCCGTTACCCCAAGT 57.630 40.909 0.00 0.00 0.00 3.16
364 482 3.444388 GCATTTGTTATCCGTTACCCCAA 59.556 43.478 0.00 0.00 0.00 4.12
366 484 3.018149 TGCATTTGTTATCCGTTACCCC 58.982 45.455 0.00 0.00 0.00 4.95
369 487 5.737290 GTCACATGCATTTGTTATCCGTTAC 59.263 40.000 12.39 0.00 0.00 2.50
384 503 4.561105 TGTCATTAACGTAGTCACATGCA 58.439 39.130 0.00 0.00 45.00 3.96
388 507 6.744082 CGTTATCTGTCATTAACGTAGTCACA 59.256 38.462 15.11 0.00 45.00 3.58
399 518 7.706607 CAGGTCTTCATTCGTTATCTGTCATTA 59.293 37.037 0.00 0.00 0.00 1.90
411 530 3.469008 TGTGTTCAGGTCTTCATTCGT 57.531 42.857 0.00 0.00 0.00 3.85
413 532 4.479619 GCATTGTGTTCAGGTCTTCATTC 58.520 43.478 0.00 0.00 0.00 2.67
421 540 0.179032 TCGTGGCATTGTGTTCAGGT 60.179 50.000 0.00 0.00 0.00 4.00
425 544 0.384230 CGTGTCGTGGCATTGTGTTC 60.384 55.000 0.00 0.00 0.00 3.18
439 558 1.755179 TAGGTGTACTAGGGCGTGTC 58.245 55.000 0.00 0.00 0.00 3.67
451 570 3.735591 GTTGTTGCAGAGGTTAGGTGTA 58.264 45.455 0.00 0.00 0.00 2.90
460 579 0.605319 TTAGGGCGTTGTTGCAGAGG 60.605 55.000 0.00 0.00 36.28 3.69
465 584 2.171635 CCTCTTAGGGCGTTGTTGC 58.828 57.895 0.00 0.00 0.00 4.17
491 611 3.038417 AGCAGTGACACTTCGCGC 61.038 61.111 5.04 6.45 37.33 6.86
495 615 1.719600 CTAGGCAGCAGTGACACTTC 58.280 55.000 5.04 0.19 31.79 3.01
512 632 0.394938 TGCTTGTCAGTTTCGGGCTA 59.605 50.000 0.00 0.00 0.00 3.93
523 643 1.554617 TCCGGATGAAGATGCTTGTCA 59.445 47.619 0.00 0.00 0.00 3.58
531 651 0.181350 GCCAGGTTCCGGATGAAGAT 59.819 55.000 4.15 0.00 32.37 2.40
538 658 2.525629 TCTGTGCCAGGTTCCGGA 60.526 61.111 0.00 0.00 31.51 5.14
540 660 0.250295 TTTCTCTGTGCCAGGTTCCG 60.250 55.000 2.86 0.00 31.51 4.30
550 670 4.378459 GCCGTTATGGTTCTTTTCTCTGTG 60.378 45.833 0.00 0.00 41.21 3.66
554 674 4.965119 ATGCCGTTATGGTTCTTTTCTC 57.035 40.909 0.00 0.00 41.21 2.87
558 678 6.827586 TTTAGAATGCCGTTATGGTTCTTT 57.172 33.333 2.34 0.00 41.21 2.52
583 705 0.253610 TCCGTGTGGGTGTCACTTTT 59.746 50.000 2.35 0.00 46.20 2.27
596 718 1.878953 ATCAAACGAAAGCTCCGTGT 58.121 45.000 13.70 6.67 40.44 4.49
598 720 2.000447 GCTATCAAACGAAAGCTCCGT 59.000 47.619 8.12 8.12 42.61 4.69
609 731 3.592059 TGTTACGGGTGAGCTATCAAAC 58.408 45.455 0.00 0.00 37.14 2.93
612 734 3.028130 TGATGTTACGGGTGAGCTATCA 58.972 45.455 0.00 0.00 0.00 2.15
614 736 2.223735 CGTGATGTTACGGGTGAGCTAT 60.224 50.000 0.00 0.00 40.22 2.97
622 744 0.719465 GTGCTTCGTGATGTTACGGG 59.281 55.000 0.00 0.00 43.85 5.28
627 749 0.606401 CCTGGGTGCTTCGTGATGTT 60.606 55.000 0.00 0.00 0.00 2.71
641 763 0.464735 TTTGTCGTGGTTGTCCTGGG 60.465 55.000 0.00 0.00 34.23 4.45
642 764 1.333619 CTTTTGTCGTGGTTGTCCTGG 59.666 52.381 0.00 0.00 34.23 4.45
653 775 5.828299 TTGGATCTGAAAACTTTTGTCGT 57.172 34.783 0.00 0.00 0.00 4.34
675 1537 1.000955 GACAGTGACGACCCACAGATT 59.999 52.381 0.00 0.00 39.42 2.40
681 1543 1.044611 TCATTGACAGTGACGACCCA 58.955 50.000 0.00 0.00 0.00 4.51
683 1545 2.148916 TGTCATTGACAGTGACGACC 57.851 50.000 21.74 3.57 46.89 4.79
698 1560 1.679311 GTGGGCATGGTCTCTGTCA 59.321 57.895 0.00 0.00 0.00 3.58
699 1561 1.078143 GGTGGGCATGGTCTCTGTC 60.078 63.158 0.00 0.00 0.00 3.51
719 1612 1.608055 TTGAGTCATGGCAACTGTGG 58.392 50.000 0.00 0.00 37.61 4.17
728 1621 6.757947 ACATTGTTTTGACTTTTGAGTCATGG 59.242 34.615 9.78 0.00 46.61 3.66
740 1633 5.514274 AACGAATCCACATTGTTTTGACT 57.486 34.783 0.00 0.00 0.00 3.41
741 1634 5.627780 GGTAACGAATCCACATTGTTTTGAC 59.372 40.000 0.00 0.00 0.00 3.18
742 1635 5.299531 TGGTAACGAATCCACATTGTTTTGA 59.700 36.000 0.00 0.00 42.51 2.69
743 1636 5.524284 TGGTAACGAATCCACATTGTTTTG 58.476 37.500 0.00 0.00 42.51 2.44
744 1637 5.776173 TGGTAACGAATCCACATTGTTTT 57.224 34.783 0.00 0.00 42.51 2.43
770 1663 0.104304 GATACAGCGGTCGGACCATT 59.896 55.000 25.80 10.95 38.47 3.16
775 1668 1.977056 ATAGTGATACAGCGGTCGGA 58.023 50.000 0.00 0.00 0.00 4.55
783 1676 4.771054 GGGTGGGTAGGTATAGTGATACAG 59.229 50.000 0.00 0.00 39.91 2.74
787 1680 4.289837 TTGGGTGGGTAGGTATAGTGAT 57.710 45.455 0.00 0.00 0.00 3.06
828 1721 2.774799 GGTTCGATGGTGGGCATGC 61.775 63.158 9.90 9.90 0.00 4.06
861 1754 9.618890 CCTGTTGAGAATCTAGATTTTATCCAA 57.381 33.333 18.88 14.25 34.92 3.53
862 1755 8.213679 CCCTGTTGAGAATCTAGATTTTATCCA 58.786 37.037 18.88 12.03 34.92 3.41
863 1756 7.174080 GCCCTGTTGAGAATCTAGATTTTATCC 59.826 40.741 18.88 6.24 34.92 2.59
864 1757 7.095439 CGCCCTGTTGAGAATCTAGATTTTATC 60.095 40.741 18.88 16.32 34.92 1.75
865 1758 6.708054 CGCCCTGTTGAGAATCTAGATTTTAT 59.292 38.462 18.88 8.67 34.92 1.40
866 1759 6.049149 CGCCCTGTTGAGAATCTAGATTTTA 58.951 40.000 18.88 6.33 34.92 1.52
867 1760 4.878397 CGCCCTGTTGAGAATCTAGATTTT 59.122 41.667 18.88 13.60 34.92 1.82
868 1761 4.446371 CGCCCTGTTGAGAATCTAGATTT 58.554 43.478 18.88 9.22 34.92 2.17
869 1762 3.742640 GCGCCCTGTTGAGAATCTAGATT 60.743 47.826 17.96 17.96 34.92 2.40
870 1763 2.224161 GCGCCCTGTTGAGAATCTAGAT 60.224 50.000 0.00 0.00 34.92 1.98
871 1764 1.137086 GCGCCCTGTTGAGAATCTAGA 59.863 52.381 0.00 0.00 34.92 2.43
872 1765 1.134699 TGCGCCCTGTTGAGAATCTAG 60.135 52.381 4.18 0.00 34.92 2.43
873 1766 0.901827 TGCGCCCTGTTGAGAATCTA 59.098 50.000 4.18 0.00 34.92 1.98
874 1767 0.674895 GTGCGCCCTGTTGAGAATCT 60.675 55.000 4.18 0.00 34.92 2.40
875 1768 0.955428 TGTGCGCCCTGTTGAGAATC 60.955 55.000 4.18 0.00 0.00 2.52
876 1769 0.537143 TTGTGCGCCCTGTTGAGAAT 60.537 50.000 4.18 0.00 0.00 2.40
877 1770 1.153066 TTGTGCGCCCTGTTGAGAA 60.153 52.632 4.18 0.00 0.00 2.87
878 1771 1.891919 GTTGTGCGCCCTGTTGAGA 60.892 57.895 4.18 0.00 0.00 3.27
879 1772 1.845809 GAGTTGTGCGCCCTGTTGAG 61.846 60.000 4.18 0.00 0.00 3.02
880 1773 1.891919 GAGTTGTGCGCCCTGTTGA 60.892 57.895 4.18 0.00 0.00 3.18
881 1774 2.186160 TGAGTTGTGCGCCCTGTTG 61.186 57.895 4.18 0.00 0.00 3.33
882 1775 2.186826 GTGAGTTGTGCGCCCTGTT 61.187 57.895 4.18 0.00 0.00 3.16
883 1776 2.591715 GTGAGTTGTGCGCCCTGT 60.592 61.111 4.18 0.00 0.00 4.00
884 1777 3.716006 CGTGAGTTGTGCGCCCTG 61.716 66.667 4.18 0.00 0.00 4.45
885 1778 3.923864 TCGTGAGTTGTGCGCCCT 61.924 61.111 4.18 0.00 0.00 5.19
886 1779 3.712881 GTCGTGAGTTGTGCGCCC 61.713 66.667 4.18 0.00 0.00 6.13
887 1780 2.658707 GAGTCGTGAGTTGTGCGCC 61.659 63.158 4.18 0.00 0.00 6.53
888 1781 1.880601 CTGAGTCGTGAGTTGTGCGC 61.881 60.000 0.00 0.00 0.00 6.09
889 1782 1.880601 GCTGAGTCGTGAGTTGTGCG 61.881 60.000 0.00 0.00 0.00 5.34
890 1783 0.875908 TGCTGAGTCGTGAGTTGTGC 60.876 55.000 0.00 0.00 0.00 4.57
891 1784 0.855349 GTGCTGAGTCGTGAGTTGTG 59.145 55.000 0.00 0.00 0.00 3.33
892 1785 0.459899 TGTGCTGAGTCGTGAGTTGT 59.540 50.000 0.00 0.00 0.00 3.32
894 1787 2.352814 GGTATGTGCTGAGTCGTGAGTT 60.353 50.000 0.00 0.00 0.00 3.01
917 1810 1.016653 GGTCCTTCTCTGCTGCGTTC 61.017 60.000 0.00 0.00 0.00 3.95
951 1844 2.090494 TCCTCCTCCTCCCAGGAATTAG 60.090 54.545 0.00 0.00 45.28 1.73
953 1846 0.725133 TCCTCCTCCTCCCAGGAATT 59.275 55.000 0.00 0.00 45.28 2.17
965 1858 0.255318 TGTACGTCCTCCTCCTCCTC 59.745 60.000 0.00 0.00 0.00 3.71
1021 1923 4.135153 CTCGGCCCTGGTGACGAG 62.135 72.222 20.77 20.77 45.34 4.18
1238 2143 0.991920 CCTAACCTGGAAGAAGCCCA 59.008 55.000 0.00 0.00 34.07 5.36
1300 5966 9.638239 GATTTGTTACAGAAAAAGGATAATGCA 57.362 29.630 0.00 0.00 0.00 3.96
1320 5989 6.142817 GCAAACGAAGAATGTGTAGATTTGT 58.857 36.000 0.00 0.00 0.00 2.83
1560 6271 2.360475 GGCTGGCCAGAACTCCAC 60.360 66.667 37.21 16.19 35.81 4.02
1658 6452 3.436704 TCCGAATTAAAGCAAGCAGAGTG 59.563 43.478 0.00 0.00 0.00 3.51
1665 6459 6.927294 ATAAGACCTCCGAATTAAAGCAAG 57.073 37.500 0.00 0.00 0.00 4.01
1672 6466 3.640029 AGGCGAATAAGACCTCCGAATTA 59.360 43.478 0.00 0.00 0.00 1.40
1673 6467 2.434702 AGGCGAATAAGACCTCCGAATT 59.565 45.455 0.00 0.00 0.00 2.17
1674 6468 2.040178 AGGCGAATAAGACCTCCGAAT 58.960 47.619 0.00 0.00 0.00 3.34
1675 6469 1.136305 CAGGCGAATAAGACCTCCGAA 59.864 52.381 0.00 0.00 0.00 4.30
1676 6470 0.744874 CAGGCGAATAAGACCTCCGA 59.255 55.000 0.00 0.00 0.00 4.55
1677 6471 0.876342 GCAGGCGAATAAGACCTCCG 60.876 60.000 0.00 0.00 0.00 4.63
1678 6472 0.466124 AGCAGGCGAATAAGACCTCC 59.534 55.000 0.00 0.00 0.00 4.30
1679 6473 2.317530 AAGCAGGCGAATAAGACCTC 57.682 50.000 0.00 0.00 0.00 3.85
1680 6474 5.163343 TGTTATAAGCAGGCGAATAAGACCT 60.163 40.000 0.00 0.00 0.00 3.85
1681 6475 5.050295 GTGTTATAAGCAGGCGAATAAGACC 60.050 44.000 13.18 0.00 0.00 3.85
1717 6521 2.631418 TCTGGAGCGAGTACTTTTCG 57.369 50.000 0.00 0.00 40.85 3.46
1759 6563 1.889573 GCTCGCCATGAACCCTAGC 60.890 63.158 0.00 0.00 0.00 3.42
1762 6566 3.390521 TCGCTCGCCATGAACCCT 61.391 61.111 0.00 0.00 0.00 4.34
2265 7069 5.914898 ACAGAATACCCATTAGCAAAACC 57.085 39.130 0.00 0.00 0.00 3.27
2266 7070 6.099341 CCAACAGAATACCCATTAGCAAAAC 58.901 40.000 0.00 0.00 0.00 2.43
2267 7071 5.337169 GCCAACAGAATACCCATTAGCAAAA 60.337 40.000 0.00 0.00 0.00 2.44
2268 7072 4.159506 GCCAACAGAATACCCATTAGCAAA 59.840 41.667 0.00 0.00 0.00 3.68
2269 7073 3.699038 GCCAACAGAATACCCATTAGCAA 59.301 43.478 0.00 0.00 0.00 3.91
2270 7074 3.053693 AGCCAACAGAATACCCATTAGCA 60.054 43.478 0.00 0.00 0.00 3.49
2271 7075 3.555966 AGCCAACAGAATACCCATTAGC 58.444 45.455 0.00 0.00 0.00 3.09
2272 7076 5.418840 ACAAAGCCAACAGAATACCCATTAG 59.581 40.000 0.00 0.00 0.00 1.73
2273 7077 5.329399 ACAAAGCCAACAGAATACCCATTA 58.671 37.500 0.00 0.00 0.00 1.90
2274 7078 4.159557 ACAAAGCCAACAGAATACCCATT 58.840 39.130 0.00 0.00 0.00 3.16
2275 7079 3.778265 ACAAAGCCAACAGAATACCCAT 58.222 40.909 0.00 0.00 0.00 4.00
2276 7080 3.237268 ACAAAGCCAACAGAATACCCA 57.763 42.857 0.00 0.00 0.00 4.51
2277 7081 4.600692 AAACAAAGCCAACAGAATACCC 57.399 40.909 0.00 0.00 0.00 3.69
2278 7082 6.156519 CCTAAAACAAAGCCAACAGAATACC 58.843 40.000 0.00 0.00 0.00 2.73
2279 7083 6.640907 CACCTAAAACAAAGCCAACAGAATAC 59.359 38.462 0.00 0.00 0.00 1.89
2280 7084 6.322712 ACACCTAAAACAAAGCCAACAGAATA 59.677 34.615 0.00 0.00 0.00 1.75
2281 7085 5.128663 ACACCTAAAACAAAGCCAACAGAAT 59.871 36.000 0.00 0.00 0.00 2.40
2282 7086 4.464597 ACACCTAAAACAAAGCCAACAGAA 59.535 37.500 0.00 0.00 0.00 3.02
2283 7087 4.020543 ACACCTAAAACAAAGCCAACAGA 58.979 39.130 0.00 0.00 0.00 3.41
2284 7088 4.111916 CACACCTAAAACAAAGCCAACAG 58.888 43.478 0.00 0.00 0.00 3.16
2285 7089 3.511934 ACACACCTAAAACAAAGCCAACA 59.488 39.130 0.00 0.00 0.00 3.33
2286 7090 4.118093 ACACACCTAAAACAAAGCCAAC 57.882 40.909 0.00 0.00 0.00 3.77
2287 7091 4.810191 AACACACCTAAAACAAAGCCAA 57.190 36.364 0.00 0.00 0.00 4.52
2288 7092 4.810191 AAACACACCTAAAACAAAGCCA 57.190 36.364 0.00 0.00 0.00 4.75
2289 7093 4.932799 ACAAAACACACCTAAAACAAAGCC 59.067 37.500 0.00 0.00 0.00 4.35
2290 7094 6.474819 AACAAAACACACCTAAAACAAAGC 57.525 33.333 0.00 0.00 0.00 3.51
2291 7095 6.794636 GCAAACAAAACACACCTAAAACAAAG 59.205 34.615 0.00 0.00 0.00 2.77
2292 7096 6.293462 GGCAAACAAAACACACCTAAAACAAA 60.293 34.615 0.00 0.00 0.00 2.83
2293 7097 5.179555 GGCAAACAAAACACACCTAAAACAA 59.820 36.000 0.00 0.00 0.00 2.83
2294 7098 4.691216 GGCAAACAAAACACACCTAAAACA 59.309 37.500 0.00 0.00 0.00 2.83
2295 7099 4.932799 AGGCAAACAAAACACACCTAAAAC 59.067 37.500 0.00 0.00 0.00 2.43
2296 7100 5.153950 AGGCAAACAAAACACACCTAAAA 57.846 34.783 0.00 0.00 0.00 1.52
2297 7101 4.675671 CGAGGCAAACAAAACACACCTAAA 60.676 41.667 0.00 0.00 0.00 1.85
2298 7102 3.181495 CGAGGCAAACAAAACACACCTAA 60.181 43.478 0.00 0.00 0.00 2.69
2299 7103 2.356382 CGAGGCAAACAAAACACACCTA 59.644 45.455 0.00 0.00 0.00 3.08
2300 7104 1.134175 CGAGGCAAACAAAACACACCT 59.866 47.619 0.00 0.00 0.00 4.00
2301 7105 1.555477 CGAGGCAAACAAAACACACC 58.445 50.000 0.00 0.00 0.00 4.16
2302 7106 1.555477 CCGAGGCAAACAAAACACAC 58.445 50.000 0.00 0.00 0.00 3.82
2303 7107 0.179124 GCCGAGGCAAACAAAACACA 60.179 50.000 9.58 0.00 41.49 3.72
2304 7108 1.206115 CGCCGAGGCAAACAAAACAC 61.206 55.000 15.03 0.00 42.06 3.32
2305 7109 1.064946 CGCCGAGGCAAACAAAACA 59.935 52.632 15.03 0.00 42.06 2.83
2306 7110 1.065109 ACGCCGAGGCAAACAAAAC 59.935 52.632 15.03 0.00 42.06 2.43
2307 7111 1.064946 CACGCCGAGGCAAACAAAA 59.935 52.632 15.03 0.00 42.06 2.44
2308 7112 2.115911 ACACGCCGAGGCAAACAAA 61.116 52.632 15.03 0.00 42.06 2.83
2309 7113 2.515057 ACACGCCGAGGCAAACAA 60.515 55.556 15.03 0.00 42.06 2.83
2310 7114 3.276091 CACACGCCGAGGCAAACA 61.276 61.111 15.03 0.00 42.06 2.83
2311 7115 4.683334 GCACACGCCGAGGCAAAC 62.683 66.667 15.03 0.00 42.06 2.93
2320 7124 4.589700 CACACACACGCACACGCC 62.590 66.667 0.00 0.00 45.53 5.68
2321 7125 4.589700 CCACACACACGCACACGC 62.590 66.667 0.00 0.00 45.53 5.34
2323 7127 2.403378 AACCCACACACACGCACAC 61.403 57.895 0.00 0.00 0.00 3.82
2324 7128 2.045829 AACCCACACACACGCACA 60.046 55.556 0.00 0.00 0.00 4.57
2325 7129 2.403378 ACAACCCACACACACGCAC 61.403 57.895 0.00 0.00 0.00 5.34
2326 7130 2.045829 ACAACCCACACACACGCA 60.046 55.556 0.00 0.00 0.00 5.24
2327 7131 1.649390 TTCACAACCCACACACACGC 61.649 55.000 0.00 0.00 0.00 5.34
2328 7132 0.098025 GTTCACAACCCACACACACG 59.902 55.000 0.00 0.00 0.00 4.49
2329 7133 1.459450 AGTTCACAACCCACACACAC 58.541 50.000 0.00 0.00 0.00 3.82
2330 7134 1.815613 CAAGTTCACAACCCACACACA 59.184 47.619 0.00 0.00 0.00 3.72
2331 7135 1.816224 ACAAGTTCACAACCCACACAC 59.184 47.619 0.00 0.00 0.00 3.82
2332 7136 1.815613 CACAAGTTCACAACCCACACA 59.184 47.619 0.00 0.00 0.00 3.72
2333 7137 1.134175 CCACAAGTTCACAACCCACAC 59.866 52.381 0.00 0.00 0.00 3.82
2334 7138 1.272203 ACCACAAGTTCACAACCCACA 60.272 47.619 0.00 0.00 0.00 4.17
2335 7139 1.470051 ACCACAAGTTCACAACCCAC 58.530 50.000 0.00 0.00 0.00 4.61
2336 7140 1.821753 CAACCACAAGTTCACAACCCA 59.178 47.619 0.00 0.00 36.18 4.51
2337 7141 1.822371 ACAACCACAAGTTCACAACCC 59.178 47.619 0.00 0.00 36.18 4.11
2338 7142 2.230266 ACACAACCACAAGTTCACAACC 59.770 45.455 0.00 0.00 36.18 3.77
2339 7143 3.241701 CACACAACCACAAGTTCACAAC 58.758 45.455 0.00 0.00 36.18 3.32
2340 7144 2.887783 ACACACAACCACAAGTTCACAA 59.112 40.909 0.00 0.00 36.18 3.33
2341 7145 2.509569 ACACACAACCACAAGTTCACA 58.490 42.857 0.00 0.00 36.18 3.58
2342 7146 3.190535 AGAACACACAACCACAAGTTCAC 59.809 43.478 0.00 0.00 36.18 3.18
2343 7147 3.417101 AGAACACACAACCACAAGTTCA 58.583 40.909 0.00 0.00 36.18 3.18
2344 7148 4.165779 CAAGAACACACAACCACAAGTTC 58.834 43.478 0.00 0.00 36.18 3.01
2345 7149 3.613910 GCAAGAACACACAACCACAAGTT 60.614 43.478 0.00 0.00 40.16 2.66
2346 7150 2.094752 GCAAGAACACACAACCACAAGT 60.095 45.455 0.00 0.00 0.00 3.16
2347 7151 2.529151 GCAAGAACACACAACCACAAG 58.471 47.619 0.00 0.00 0.00 3.16
2348 7152 1.203523 GGCAAGAACACACAACCACAA 59.796 47.619 0.00 0.00 0.00 3.33
2349 7153 0.814457 GGCAAGAACACACAACCACA 59.186 50.000 0.00 0.00 0.00 4.17
2350 7154 0.102300 GGGCAAGAACACACAACCAC 59.898 55.000 0.00 0.00 0.00 4.16
2351 7155 0.033601 AGGGCAAGAACACACAACCA 60.034 50.000 0.00 0.00 0.00 3.67
2352 7156 1.975660 TAGGGCAAGAACACACAACC 58.024 50.000 0.00 0.00 0.00 3.77
2353 7157 3.857010 GCATTAGGGCAAGAACACACAAC 60.857 47.826 0.00 0.00 0.00 3.32
2354 7158 2.295909 GCATTAGGGCAAGAACACACAA 59.704 45.455 0.00 0.00 0.00 3.33
2355 7159 1.885887 GCATTAGGGCAAGAACACACA 59.114 47.619 0.00 0.00 0.00 3.72
2356 7160 1.202348 GGCATTAGGGCAAGAACACAC 59.798 52.381 0.00 0.00 42.77 3.82
2357 7161 1.544724 GGCATTAGGGCAAGAACACA 58.455 50.000 0.00 0.00 42.77 3.72
2358 7162 0.817654 GGGCATTAGGGCAAGAACAC 59.182 55.000 0.00 0.00 45.66 3.32
2359 7163 0.704076 AGGGCATTAGGGCAAGAACA 59.296 50.000 0.00 0.00 45.66 3.18
2360 7164 1.106285 CAGGGCATTAGGGCAAGAAC 58.894 55.000 0.00 0.00 45.66 3.01
2361 7165 0.704076 ACAGGGCATTAGGGCAAGAA 59.296 50.000 0.00 0.00 45.66 2.52
2362 7166 0.034186 CACAGGGCATTAGGGCAAGA 60.034 55.000 0.00 0.00 45.66 3.02
2363 7167 0.323725 ACACAGGGCATTAGGGCAAG 60.324 55.000 0.00 0.00 45.66 4.01
2364 7168 0.611618 CACACAGGGCATTAGGGCAA 60.612 55.000 0.00 0.00 45.66 4.52
2365 7169 1.001020 CACACAGGGCATTAGGGCA 60.001 57.895 0.00 0.00 45.66 5.36
2366 7170 2.418083 GCACACAGGGCATTAGGGC 61.418 63.158 0.00 0.00 42.44 5.19
2367 7171 2.114670 CGCACACAGGGCATTAGGG 61.115 63.158 0.00 0.00 0.00 3.53
2368 7172 3.501396 CGCACACAGGGCATTAGG 58.499 61.111 0.00 0.00 0.00 2.69
2393 7197 2.426183 CGGAGACATATACGCGCGC 61.426 63.158 32.58 23.91 0.00 6.86
2394 7198 0.164432 TACGGAGACATATACGCGCG 59.836 55.000 30.96 30.96 0.00 6.86
2395 7199 2.174764 CATACGGAGACATATACGCGC 58.825 52.381 5.73 0.00 0.00 6.86
2396 7200 2.417586 TCCATACGGAGACATATACGCG 59.582 50.000 3.53 3.53 35.91 6.01
2397 7201 4.430137 TTCCATACGGAGACATATACGC 57.570 45.455 0.00 0.00 44.10 4.42
2398 7202 6.617879 TGAATTCCATACGGAGACATATACG 58.382 40.000 2.27 0.00 44.10 3.06
2399 7203 9.436957 AAATGAATTCCATACGGAGACATATAC 57.563 33.333 2.27 0.00 44.10 1.47
2400 7204 9.653287 GAAATGAATTCCATACGGAGACATATA 57.347 33.333 2.27 0.00 44.10 0.86
2401 7205 8.378565 AGAAATGAATTCCATACGGAGACATAT 58.621 33.333 2.27 0.00 44.10 1.78
2402 7206 7.657354 CAGAAATGAATTCCATACGGAGACATA 59.343 37.037 2.27 0.00 44.10 2.29
2403 7207 6.484643 CAGAAATGAATTCCATACGGAGACAT 59.515 38.462 2.27 0.00 44.10 3.06
2404 7208 5.817296 CAGAAATGAATTCCATACGGAGACA 59.183 40.000 2.27 0.00 44.10 3.41
2405 7209 5.817816 ACAGAAATGAATTCCATACGGAGAC 59.182 40.000 2.27 0.00 44.10 3.36
2406 7210 5.989477 ACAGAAATGAATTCCATACGGAGA 58.011 37.500 2.27 0.00 44.10 3.71
2407 7211 7.495934 ACTTACAGAAATGAATTCCATACGGAG 59.504 37.037 2.27 0.00 44.10 4.63
2408 7212 7.279981 CACTTACAGAAATGAATTCCATACGGA 59.720 37.037 2.27 0.00 38.94 4.69
2409 7213 7.279981 TCACTTACAGAAATGAATTCCATACGG 59.720 37.037 2.27 0.00 38.94 4.02
2410 7214 8.196802 TCACTTACAGAAATGAATTCCATACG 57.803 34.615 2.27 0.00 38.94 3.06
2413 7217 8.900781 CAGATCACTTACAGAAATGAATTCCAT 58.099 33.333 2.27 0.00 38.94 3.41
2414 7218 7.148188 GCAGATCACTTACAGAAATGAATTCCA 60.148 37.037 2.27 0.00 38.94 3.53
2415 7219 7.066766 AGCAGATCACTTACAGAAATGAATTCC 59.933 37.037 2.27 0.00 38.94 3.01
2416 7220 7.983307 AGCAGATCACTTACAGAAATGAATTC 58.017 34.615 0.00 0.00 38.39 2.17
2417 7221 7.934855 AGCAGATCACTTACAGAAATGAATT 57.065 32.000 0.00 0.00 0.00 2.17
2418 7222 7.609146 TCAAGCAGATCACTTACAGAAATGAAT 59.391 33.333 0.00 0.00 0.00 2.57
2419 7223 6.936335 TCAAGCAGATCACTTACAGAAATGAA 59.064 34.615 0.00 0.00 0.00 2.57
2420 7224 6.466812 TCAAGCAGATCACTTACAGAAATGA 58.533 36.000 0.00 0.00 0.00 2.57
2421 7225 6.732531 TCAAGCAGATCACTTACAGAAATG 57.267 37.500 0.00 0.00 0.00 2.32
2422 7226 7.609146 TGATTCAAGCAGATCACTTACAGAAAT 59.391 33.333 0.00 0.00 0.00 2.17
2423 7227 6.936335 TGATTCAAGCAGATCACTTACAGAAA 59.064 34.615 0.00 0.00 0.00 2.52
2424 7228 6.466812 TGATTCAAGCAGATCACTTACAGAA 58.533 36.000 0.00 0.00 0.00 3.02
2425 7229 6.041423 TGATTCAAGCAGATCACTTACAGA 57.959 37.500 0.00 0.00 0.00 3.41
2426 7230 6.922247 ATGATTCAAGCAGATCACTTACAG 57.078 37.500 0.00 0.00 0.00 2.74
2427 7231 8.969260 ATTATGATTCAAGCAGATCACTTACA 57.031 30.769 0.00 0.00 0.00 2.41
2462 7266 7.308782 AGAAACAAGCATATAGTAGTGCAAC 57.691 36.000 11.54 0.00 43.63 4.17
2463 7267 7.626240 GCAAGAAACAAGCATATAGTAGTGCAA 60.626 37.037 11.54 0.00 43.63 4.08
2464 7268 6.183360 GCAAGAAACAAGCATATAGTAGTGCA 60.183 38.462 11.54 0.00 43.63 4.57
2465 7269 6.183360 TGCAAGAAACAAGCATATAGTAGTGC 60.183 38.462 2.85 2.85 41.57 4.40
2466 7270 7.307493 TGCAAGAAACAAGCATATAGTAGTG 57.693 36.000 0.00 0.00 32.55 2.74
2476 7280 4.511527 TCCAAAAATGCAAGAAACAAGCA 58.488 34.783 0.00 0.00 43.14 3.91
2477 7281 5.482686 TTCCAAAAATGCAAGAAACAAGC 57.517 34.783 0.00 0.00 0.00 4.01
2478 7282 8.277713 CACTATTCCAAAAATGCAAGAAACAAG 58.722 33.333 0.00 0.00 0.00 3.16
2479 7283 7.226325 CCACTATTCCAAAAATGCAAGAAACAA 59.774 33.333 0.00 0.00 0.00 2.83
2480 7284 6.705381 CCACTATTCCAAAAATGCAAGAAACA 59.295 34.615 0.00 0.00 0.00 2.83
2481 7285 6.928492 TCCACTATTCCAAAAATGCAAGAAAC 59.072 34.615 0.00 0.00 0.00 2.78
2482 7286 7.060383 TCCACTATTCCAAAAATGCAAGAAA 57.940 32.000 0.00 0.00 0.00 2.52
2483 7287 6.662865 TCCACTATTCCAAAAATGCAAGAA 57.337 33.333 0.00 0.00 0.00 2.52
2484 7288 6.267471 ACTTCCACTATTCCAAAAATGCAAGA 59.733 34.615 0.00 0.00 0.00 3.02
2485 7289 6.458210 ACTTCCACTATTCCAAAAATGCAAG 58.542 36.000 0.00 0.00 0.00 4.01
2486 7290 6.418057 ACTTCCACTATTCCAAAAATGCAA 57.582 33.333 0.00 0.00 0.00 4.08
2487 7291 6.267471 AGAACTTCCACTATTCCAAAAATGCA 59.733 34.615 0.00 0.00 0.00 3.96
2488 7292 6.691508 AGAACTTCCACTATTCCAAAAATGC 58.308 36.000 0.00 0.00 0.00 3.56
2561 7365 8.776470 CGGTATTACCTAAAAGAAGAACAAACA 58.224 33.333 11.05 0.00 35.66 2.83
2562 7366 8.232513 CCGGTATTACCTAAAAGAAGAACAAAC 58.767 37.037 11.05 0.00 35.66 2.93
2563 7367 7.938490 ACCGGTATTACCTAAAAGAAGAACAAA 59.062 33.333 4.49 0.00 35.66 2.83
2564 7368 7.452562 ACCGGTATTACCTAAAAGAAGAACAA 58.547 34.615 4.49 0.00 35.66 2.83
2565 7369 7.008021 ACCGGTATTACCTAAAAGAAGAACA 57.992 36.000 4.49 0.00 35.66 3.18
2566 7370 8.034804 TGTACCGGTATTACCTAAAAGAAGAAC 58.965 37.037 19.19 0.68 35.66 3.01
2567 7371 8.034804 GTGTACCGGTATTACCTAAAAGAAGAA 58.965 37.037 19.19 0.00 35.66 2.52
2568 7372 7.397192 AGTGTACCGGTATTACCTAAAAGAAGA 59.603 37.037 19.19 0.00 35.66 2.87
2569 7373 7.550712 AGTGTACCGGTATTACCTAAAAGAAG 58.449 38.462 19.19 0.00 35.66 2.85
2570 7374 7.178274 TGAGTGTACCGGTATTACCTAAAAGAA 59.822 37.037 19.19 0.00 35.66 2.52
2571 7375 6.663093 TGAGTGTACCGGTATTACCTAAAAGA 59.337 38.462 19.19 0.00 35.66 2.52
2572 7376 6.866480 TGAGTGTACCGGTATTACCTAAAAG 58.134 40.000 19.19 0.00 35.66 2.27
2573 7377 6.849085 TGAGTGTACCGGTATTACCTAAAA 57.151 37.500 19.19 2.39 35.66 1.52
2574 7378 7.422465 AATGAGTGTACCGGTATTACCTAAA 57.578 36.000 19.19 6.74 35.66 1.85
2575 7379 7.123997 TGAAATGAGTGTACCGGTATTACCTAA 59.876 37.037 19.19 8.96 35.66 2.69
2576 7380 6.606796 TGAAATGAGTGTACCGGTATTACCTA 59.393 38.462 19.19 11.77 35.66 3.08
2577 7381 5.422970 TGAAATGAGTGTACCGGTATTACCT 59.577 40.000 19.19 10.97 35.66 3.08
2578 7382 5.663456 TGAAATGAGTGTACCGGTATTACC 58.337 41.667 19.19 13.51 34.05 2.85
2579 7383 7.781548 AATGAAATGAGTGTACCGGTATTAC 57.218 36.000 19.19 19.03 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.