Multiple sequence alignment - TraesCS1A01G330900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G330900 chr1A 100.000 2999 0 0 1 2999 519871325 519874323 0.000000e+00 5539.0
1 TraesCS1A01G330900 chr1A 97.143 595 17 0 2405 2999 550618848 550619442 0.000000e+00 1005.0
2 TraesCS1A01G330900 chr1A 94.118 153 9 0 5 157 14575092 14575244 1.800000e-57 233.0
3 TraesCS1A01G330900 chr1A 81.373 102 13 6 301 400 391234191 391234288 8.910000e-11 78.7
4 TraesCS1A01G330900 chr1B 88.983 1543 86 31 863 2357 573081077 573079571 0.000000e+00 1831.0
5 TraesCS1A01G330900 chr1B 81.633 196 10 8 654 837 573081326 573081145 4.030000e-29 139.0
6 TraesCS1A01G330900 chr1D 96.670 1051 23 4 980 2021 423670361 423671408 0.000000e+00 1736.0
7 TraesCS1A01G330900 chr1D 83.333 432 41 18 437 837 423668346 423668777 1.310000e-98 370.0
8 TraesCS1A01G330900 chr1D 96.939 196 5 1 2171 2365 423671827 423672022 8.020000e-86 327.0
9 TraesCS1A01G330900 chr2A 97.815 595 13 0 2405 2999 178148976 178149570 0.000000e+00 1027.0
10 TraesCS1A01G330900 chr2A 94.118 153 9 0 5 157 274246189 274246341 1.800000e-57 233.0
11 TraesCS1A01G330900 chr2A 94.118 153 9 0 5 157 274419731 274419579 1.800000e-57 233.0
12 TraesCS1A01G330900 chr6A 97.479 595 15 0 2405 2999 615067321 615066727 0.000000e+00 1016.0
13 TraesCS1A01G330900 chr6A 94.771 153 8 0 5 157 237625101 237625253 3.860000e-59 239.0
14 TraesCS1A01G330900 chr6A 97.619 42 1 0 257 298 551868811 551868852 4.150000e-09 73.1
15 TraesCS1A01G330900 chr3A 97.483 596 14 1 2405 2999 725434096 725433501 0.000000e+00 1016.0
16 TraesCS1A01G330900 chr3A 90.588 170 13 2 5 174 550749721 550749555 3.890000e-54 222.0
17 TraesCS1A01G330900 chr3A 89.888 89 7 2 159 245 665999984 666000072 2.440000e-21 113.0
18 TraesCS1A01G330900 chr3A 86.076 79 11 0 347 425 686079451 686079529 5.330000e-13 86.1
19 TraesCS1A01G330900 chr7A 96.471 595 20 1 2405 2999 299289883 299289290 0.000000e+00 981.0
20 TraesCS1A01G330900 chr7A 78.772 928 139 40 1039 1931 113485724 113486628 1.210000e-158 569.0
21 TraesCS1A01G330900 chr7A 84.343 198 26 4 162 355 83763836 83764032 3.950000e-44 189.0
22 TraesCS1A01G330900 chr2B 91.107 596 51 2 2405 2999 488909820 488910414 0.000000e+00 806.0
23 TraesCS1A01G330900 chr2B 92.261 491 38 0 2509 2999 53364449 53363959 0.000000e+00 697.0
24 TraesCS1A01G330900 chr2B 82.609 115 13 3 159 266 92536925 92537039 8.850000e-16 95.3
25 TraesCS1A01G330900 chr4A 88.435 588 67 1 2405 2992 720877167 720876581 0.000000e+00 708.0
26 TraesCS1A01G330900 chr4A 94.118 153 9 0 5 157 574301852 574302004 1.800000e-57 233.0
27 TraesCS1A01G330900 chr5A 84.333 600 94 0 2399 2998 462831120 462830521 3.330000e-164 588.0
28 TraesCS1A01G330900 chr5A 94.118 153 9 0 5 157 631371469 631371317 1.800000e-57 233.0
29 TraesCS1A01G330900 chr7B 78.879 928 138 44 1039 1931 67818592 67819496 2.590000e-160 575.0
30 TraesCS1A01G330900 chr7B 84.932 146 16 2 159 298 477438883 477439028 3.120000e-30 143.0
31 TraesCS1A01G330900 chr7D 78.579 929 139 44 1039 1931 108618919 108619823 2.610000e-155 558.0
32 TraesCS1A01G330900 chr5B 93.631 157 10 0 5 161 669151074 669151230 5.000000e-58 235.0
33 TraesCS1A01G330900 chr5B 83.673 147 17 2 159 298 297113667 297113521 6.750000e-27 132.0
34 TraesCS1A01G330900 chr5B 81.879 149 18 4 159 298 681615424 681615572 1.890000e-22 117.0
35 TraesCS1A01G330900 chr5B 82.014 139 18 5 160 291 515402545 515402407 8.790000e-21 111.0
36 TraesCS1A01G330900 chr5B 83.673 98 16 0 303 400 668135626 668135723 3.180000e-15 93.5
37 TraesCS1A01G330900 chr4B 93.464 153 10 0 5 157 639933643 639933795 8.360000e-56 228.0
38 TraesCS1A01G330900 chr4B 82.734 139 23 1 303 440 588697731 588697593 4.060000e-24 122.0
39 TraesCS1A01G330900 chr4B 85.714 98 14 0 303 400 598453238 598453335 1.470000e-18 104.0
40 TraesCS1A01G330900 chr4B 83.838 99 16 0 302 400 644272293 644272391 8.850000e-16 95.3
41 TraesCS1A01G330900 chr2D 85.235 149 10 9 159 298 544580476 544580331 3.120000e-30 143.0
42 TraesCS1A01G330900 chr4D 82.653 98 13 4 305 400 73211793 73211888 1.920000e-12 84.2
43 TraesCS1A01G330900 chrUn 80.612 98 15 4 305 400 295920120 295920215 4.150000e-09 73.1
44 TraesCS1A01G330900 chrUn 80.612 98 15 4 305 400 326793198 326793103 4.150000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G330900 chr1A 519871325 519874323 2998 False 5539 5539 100.000 1 2999 1 chr1A.!!$F3 2998
1 TraesCS1A01G330900 chr1A 550618848 550619442 594 False 1005 1005 97.143 2405 2999 1 chr1A.!!$F4 594
2 TraesCS1A01G330900 chr1B 573079571 573081326 1755 True 985 1831 85.308 654 2357 2 chr1B.!!$R1 1703
3 TraesCS1A01G330900 chr1D 423668346 423672022 3676 False 811 1736 92.314 437 2365 3 chr1D.!!$F1 1928
4 TraesCS1A01G330900 chr2A 178148976 178149570 594 False 1027 1027 97.815 2405 2999 1 chr2A.!!$F1 594
5 TraesCS1A01G330900 chr6A 615066727 615067321 594 True 1016 1016 97.479 2405 2999 1 chr6A.!!$R1 594
6 TraesCS1A01G330900 chr3A 725433501 725434096 595 True 1016 1016 97.483 2405 2999 1 chr3A.!!$R2 594
7 TraesCS1A01G330900 chr7A 299289290 299289883 593 True 981 981 96.471 2405 2999 1 chr7A.!!$R1 594
8 TraesCS1A01G330900 chr7A 113485724 113486628 904 False 569 569 78.772 1039 1931 1 chr7A.!!$F2 892
9 TraesCS1A01G330900 chr2B 488909820 488910414 594 False 806 806 91.107 2405 2999 1 chr2B.!!$F2 594
10 TraesCS1A01G330900 chr4A 720876581 720877167 586 True 708 708 88.435 2405 2992 1 chr4A.!!$R1 587
11 TraesCS1A01G330900 chr5A 462830521 462831120 599 True 588 588 84.333 2399 2998 1 chr5A.!!$R1 599
12 TraesCS1A01G330900 chr7B 67818592 67819496 904 False 575 575 78.879 1039 1931 1 chr7B.!!$F1 892
13 TraesCS1A01G330900 chr7D 108618919 108619823 904 False 558 558 78.579 1039 1931 1 chr7D.!!$F1 892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.104855 CCATTGGAGCTTCGATCCGA 59.895 55.0 0.0 0.0 39.91 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 3550 0.98423 GGGACACCCTGTTCATCAGA 59.016 55.0 0.0 0.0 46.27 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.882742 ACGTCTACGACTTTACGACC 57.117 50.000 9.86 0.00 43.02 4.79
21 22 1.464997 ACGTCTACGACTTTACGACCC 59.535 52.381 9.86 0.00 43.02 4.46
22 23 1.464608 CGTCTACGACTTTACGACCCA 59.535 52.381 0.00 0.00 43.02 4.51
23 24 2.095768 CGTCTACGACTTTACGACCCAA 60.096 50.000 0.00 0.00 43.02 4.12
24 25 3.609175 CGTCTACGACTTTACGACCCAAA 60.609 47.826 0.00 0.00 43.02 3.28
25 26 3.670523 GTCTACGACTTTACGACCCAAAC 59.329 47.826 0.00 0.00 37.03 2.93
26 27 2.896745 ACGACTTTACGACCCAAACT 57.103 45.000 0.00 0.00 37.03 2.66
27 28 4.759693 TCTACGACTTTACGACCCAAACTA 59.240 41.667 0.00 0.00 37.03 2.24
28 29 4.320608 ACGACTTTACGACCCAAACTAA 57.679 40.909 0.00 0.00 37.03 2.24
29 30 4.051237 ACGACTTTACGACCCAAACTAAC 58.949 43.478 0.00 0.00 37.03 2.34
30 31 3.429881 CGACTTTACGACCCAAACTAACC 59.570 47.826 0.00 0.00 35.09 2.85
31 32 3.743521 ACTTTACGACCCAAACTAACCC 58.256 45.455 0.00 0.00 0.00 4.11
32 33 3.392285 ACTTTACGACCCAAACTAACCCT 59.608 43.478 0.00 0.00 0.00 4.34
33 34 4.141413 ACTTTACGACCCAAACTAACCCTT 60.141 41.667 0.00 0.00 0.00 3.95
34 35 2.556144 ACGACCCAAACTAACCCTTC 57.444 50.000 0.00 0.00 0.00 3.46
35 36 2.052468 ACGACCCAAACTAACCCTTCT 58.948 47.619 0.00 0.00 0.00 2.85
36 37 2.224450 ACGACCCAAACTAACCCTTCTG 60.224 50.000 0.00 0.00 0.00 3.02
37 38 2.038033 CGACCCAAACTAACCCTTCTGA 59.962 50.000 0.00 0.00 0.00 3.27
38 39 3.307480 CGACCCAAACTAACCCTTCTGAT 60.307 47.826 0.00 0.00 0.00 2.90
39 40 4.663334 GACCCAAACTAACCCTTCTGATT 58.337 43.478 0.00 0.00 0.00 2.57
40 41 4.663334 ACCCAAACTAACCCTTCTGATTC 58.337 43.478 0.00 0.00 0.00 2.52
41 42 4.354087 ACCCAAACTAACCCTTCTGATTCT 59.646 41.667 0.00 0.00 0.00 2.40
42 43 5.550403 ACCCAAACTAACCCTTCTGATTCTA 59.450 40.000 0.00 0.00 0.00 2.10
43 44 5.880887 CCCAAACTAACCCTTCTGATTCTAC 59.119 44.000 0.00 0.00 0.00 2.59
44 45 5.581085 CCAAACTAACCCTTCTGATTCTACG 59.419 44.000 0.00 0.00 0.00 3.51
45 46 6.395629 CAAACTAACCCTTCTGATTCTACGA 58.604 40.000 0.00 0.00 0.00 3.43
46 47 6.793505 AACTAACCCTTCTGATTCTACGAT 57.206 37.500 0.00 0.00 0.00 3.73
47 48 6.793505 ACTAACCCTTCTGATTCTACGATT 57.206 37.500 0.00 0.00 0.00 3.34
48 49 7.184067 ACTAACCCTTCTGATTCTACGATTT 57.816 36.000 0.00 0.00 0.00 2.17
49 50 7.621796 ACTAACCCTTCTGATTCTACGATTTT 58.378 34.615 0.00 0.00 0.00 1.82
50 51 6.743575 AACCCTTCTGATTCTACGATTTTG 57.256 37.500 0.00 0.00 0.00 2.44
51 52 5.186198 ACCCTTCTGATTCTACGATTTTGG 58.814 41.667 0.00 0.00 0.00 3.28
52 53 5.186198 CCCTTCTGATTCTACGATTTTGGT 58.814 41.667 0.00 0.00 0.00 3.67
53 54 5.648092 CCCTTCTGATTCTACGATTTTGGTT 59.352 40.000 0.00 0.00 0.00 3.67
54 55 6.183360 CCCTTCTGATTCTACGATTTTGGTTC 60.183 42.308 0.00 0.00 0.00 3.62
55 56 6.371548 CCTTCTGATTCTACGATTTTGGTTCA 59.628 38.462 0.00 0.00 0.00 3.18
56 57 7.066284 CCTTCTGATTCTACGATTTTGGTTCAT 59.934 37.037 0.00 0.00 0.00 2.57
57 58 9.098355 CTTCTGATTCTACGATTTTGGTTCATA 57.902 33.333 0.00 0.00 0.00 2.15
58 59 8.648557 TCTGATTCTACGATTTTGGTTCATAG 57.351 34.615 0.00 0.00 0.00 2.23
59 60 8.474831 TCTGATTCTACGATTTTGGTTCATAGA 58.525 33.333 0.00 0.00 0.00 1.98
60 61 9.098355 CTGATTCTACGATTTTGGTTCATAGAA 57.902 33.333 0.00 0.00 33.15 2.10
61 62 9.613428 TGATTCTACGATTTTGGTTCATAGAAT 57.387 29.630 2.68 2.68 39.44 2.40
63 64 9.838339 ATTCTACGATTTTGGTTCATAGAATCT 57.162 29.630 0.00 0.00 34.39 2.40
65 66 9.745880 TCTACGATTTTGGTTCATAGAATCTAC 57.254 33.333 0.00 0.00 0.00 2.59
66 67 9.529325 CTACGATTTTGGTTCATAGAATCTACA 57.471 33.333 0.00 0.00 0.00 2.74
67 68 8.964476 ACGATTTTGGTTCATAGAATCTACAT 57.036 30.769 0.00 0.00 0.00 2.29
68 69 9.396022 ACGATTTTGGTTCATAGAATCTACATT 57.604 29.630 0.00 0.00 0.00 2.71
75 76 9.878667 TGGTTCATAGAATCTACATTTTTACGA 57.121 29.630 0.00 0.00 0.00 3.43
86 87 9.698309 ATCTACATTTTTACGATCCTGATAGTG 57.302 33.333 3.52 0.00 0.00 2.74
87 88 8.909923 TCTACATTTTTACGATCCTGATAGTGA 58.090 33.333 3.52 0.00 0.00 3.41
88 89 9.529325 CTACATTTTTACGATCCTGATAGTGAA 57.471 33.333 3.52 0.00 0.00 3.18
89 90 8.425577 ACATTTTTACGATCCTGATAGTGAAG 57.574 34.615 3.52 0.00 0.00 3.02
90 91 8.258007 ACATTTTTACGATCCTGATAGTGAAGA 58.742 33.333 3.52 0.00 0.00 2.87
91 92 9.265901 CATTTTTACGATCCTGATAGTGAAGAT 57.734 33.333 3.52 0.67 0.00 2.40
92 93 9.838339 ATTTTTACGATCCTGATAGTGAAGATT 57.162 29.630 3.52 0.00 0.00 2.40
93 94 8.873215 TTTTACGATCCTGATAGTGAAGATTC 57.127 34.615 3.52 0.00 0.00 2.52
94 95 7.825331 TTACGATCCTGATAGTGAAGATTCT 57.175 36.000 3.52 0.00 0.00 2.40
95 96 8.919777 TTACGATCCTGATAGTGAAGATTCTA 57.080 34.615 3.52 0.00 0.00 2.10
96 97 7.209471 ACGATCCTGATAGTGAAGATTCTAC 57.791 40.000 0.00 0.00 0.00 2.59
97 98 6.072948 ACGATCCTGATAGTGAAGATTCTACG 60.073 42.308 0.00 0.00 0.00 3.51
98 99 6.147985 CGATCCTGATAGTGAAGATTCTACGA 59.852 42.308 0.00 0.00 0.00 3.43
99 100 7.148323 CGATCCTGATAGTGAAGATTCTACGAT 60.148 40.741 0.00 0.00 0.00 3.73
100 101 7.825331 TCCTGATAGTGAAGATTCTACGATT 57.175 36.000 0.00 0.00 0.00 3.34
101 102 8.239038 TCCTGATAGTGAAGATTCTACGATTT 57.761 34.615 0.00 0.00 0.00 2.17
102 103 8.138074 TCCTGATAGTGAAGATTCTACGATTTG 58.862 37.037 0.00 0.00 0.00 2.32
103 104 7.095857 CCTGATAGTGAAGATTCTACGATTTGC 60.096 40.741 0.00 0.00 0.00 3.68
105 106 4.744570 AGTGAAGATTCTACGATTTGCGA 58.255 39.130 0.00 0.00 44.57 5.10
106 107 5.352284 AGTGAAGATTCTACGATTTGCGAT 58.648 37.500 0.00 0.00 44.57 4.58
107 108 6.504398 AGTGAAGATTCTACGATTTGCGATA 58.496 36.000 0.00 0.00 44.57 2.92
108 109 6.418226 AGTGAAGATTCTACGATTTGCGATAC 59.582 38.462 0.00 0.00 44.57 2.24
109 110 6.418226 GTGAAGATTCTACGATTTGCGATACT 59.582 38.462 0.00 0.00 44.57 2.12
110 111 7.590322 GTGAAGATTCTACGATTTGCGATACTA 59.410 37.037 0.00 0.00 44.57 1.82
111 112 7.590322 TGAAGATTCTACGATTTGCGATACTAC 59.410 37.037 0.00 0.00 44.57 2.73
112 113 6.380190 AGATTCTACGATTTGCGATACTACC 58.620 40.000 0.00 0.00 44.57 3.18
113 114 5.503662 TTCTACGATTTGCGATACTACCA 57.496 39.130 0.00 0.00 44.57 3.25
114 115 5.700722 TCTACGATTTGCGATACTACCAT 57.299 39.130 0.00 0.00 44.57 3.55
115 116 6.080648 TCTACGATTTGCGATACTACCATT 57.919 37.500 0.00 0.00 44.57 3.16
116 117 5.918576 TCTACGATTTGCGATACTACCATTG 59.081 40.000 0.00 0.00 44.57 2.82
117 118 3.807622 ACGATTTGCGATACTACCATTGG 59.192 43.478 0.00 0.00 44.57 3.16
118 119 4.055360 CGATTTGCGATACTACCATTGGA 58.945 43.478 10.37 0.00 44.57 3.53
119 120 4.150627 CGATTTGCGATACTACCATTGGAG 59.849 45.833 10.37 5.22 44.57 3.86
120 121 2.526304 TGCGATACTACCATTGGAGC 57.474 50.000 10.37 3.90 0.00 4.70
121 122 2.039418 TGCGATACTACCATTGGAGCT 58.961 47.619 10.37 0.00 0.00 4.09
122 123 2.434336 TGCGATACTACCATTGGAGCTT 59.566 45.455 10.37 0.00 0.00 3.74
123 124 3.060602 GCGATACTACCATTGGAGCTTC 58.939 50.000 10.37 0.00 0.00 3.86
124 125 3.309388 CGATACTACCATTGGAGCTTCG 58.691 50.000 10.37 10.23 0.00 3.79
125 126 3.004419 CGATACTACCATTGGAGCTTCGA 59.996 47.826 10.37 0.00 0.00 3.71
126 127 4.321304 CGATACTACCATTGGAGCTTCGAT 60.321 45.833 10.37 0.00 0.00 3.59
127 128 3.460857 ACTACCATTGGAGCTTCGATC 57.539 47.619 10.37 0.00 0.00 3.69
128 129 2.103263 ACTACCATTGGAGCTTCGATCC 59.897 50.000 10.37 0.00 37.35 3.36
129 130 0.179073 ACCATTGGAGCTTCGATCCG 60.179 55.000 10.37 0.00 39.91 4.18
130 131 0.104855 CCATTGGAGCTTCGATCCGA 59.895 55.000 0.00 0.00 39.91 4.55
131 132 1.270518 CCATTGGAGCTTCGATCCGAT 60.271 52.381 0.00 1.02 40.94 4.18
132 133 2.487934 CATTGGAGCTTCGATCCGATT 58.512 47.619 3.85 0.00 38.66 3.34
133 134 2.225068 TTGGAGCTTCGATCCGATTC 57.775 50.000 0.00 0.00 39.91 2.52
134 135 1.111277 TGGAGCTTCGATCCGATTCA 58.889 50.000 0.00 0.00 39.91 2.57
135 136 1.067669 TGGAGCTTCGATCCGATTCAG 59.932 52.381 0.00 0.00 39.91 3.02
136 137 1.338337 GGAGCTTCGATCCGATTCAGA 59.662 52.381 0.00 0.00 35.23 3.27
137 138 2.223829 GGAGCTTCGATCCGATTCAGAA 60.224 50.000 0.00 0.00 35.23 3.02
138 139 3.553922 GGAGCTTCGATCCGATTCAGAAT 60.554 47.826 0.00 0.00 35.23 2.40
139 140 3.648009 AGCTTCGATCCGATTCAGAATC 58.352 45.455 12.62 12.62 35.23 2.52
154 155 2.721129 GAATCGCGATTCTGACAACC 57.279 50.000 40.72 21.74 42.85 3.77
155 156 2.271800 GAATCGCGATTCTGACAACCT 58.728 47.619 40.72 17.09 42.85 3.50
156 157 2.386661 ATCGCGATTCTGACAACCTT 57.613 45.000 17.62 0.00 0.00 3.50
157 158 3.520290 ATCGCGATTCTGACAACCTTA 57.480 42.857 17.62 0.00 0.00 2.69
158 159 2.602878 TCGCGATTCTGACAACCTTAC 58.397 47.619 3.71 0.00 0.00 2.34
159 160 1.320555 CGCGATTCTGACAACCTTACG 59.679 52.381 0.00 0.00 0.00 3.18
160 161 1.060698 GCGATTCTGACAACCTTACGC 59.939 52.381 0.00 0.00 37.11 4.42
161 162 2.333926 CGATTCTGACAACCTTACGCA 58.666 47.619 0.00 0.00 0.00 5.24
162 163 2.345641 CGATTCTGACAACCTTACGCAG 59.654 50.000 0.00 0.00 0.00 5.18
163 164 3.585862 GATTCTGACAACCTTACGCAGA 58.414 45.455 0.00 0.00 34.11 4.26
164 165 2.724977 TCTGACAACCTTACGCAGAG 57.275 50.000 0.00 0.00 32.36 3.35
165 166 1.272490 TCTGACAACCTTACGCAGAGG 59.728 52.381 0.00 0.00 40.24 3.69
166 167 0.320421 TGACAACCTTACGCAGAGGC 60.320 55.000 0.00 0.00 37.84 4.70
181 182 2.409651 GGCGACGAGGCTAGTGAG 59.590 66.667 4.57 0.13 42.90 3.51
182 183 2.409651 GCGACGAGGCTAGTGAGG 59.590 66.667 4.57 0.00 0.00 3.86
183 184 3.111939 CGACGAGGCTAGTGAGGG 58.888 66.667 4.57 0.00 0.00 4.30
184 185 2.482333 CGACGAGGCTAGTGAGGGG 61.482 68.421 4.57 0.00 0.00 4.79
185 186 2.042843 ACGAGGCTAGTGAGGGGG 60.043 66.667 0.00 0.00 0.00 5.40
186 187 3.541713 CGAGGCTAGTGAGGGGGC 61.542 72.222 0.00 0.00 0.00 5.80
187 188 3.541713 GAGGCTAGTGAGGGGGCG 61.542 72.222 0.00 0.00 0.00 6.13
188 189 4.075793 AGGCTAGTGAGGGGGCGA 62.076 66.667 0.00 0.00 0.00 5.54
189 190 3.541713 GGCTAGTGAGGGGGCGAG 61.542 72.222 0.00 0.00 0.00 5.03
190 191 2.442272 GCTAGTGAGGGGGCGAGA 60.442 66.667 0.00 0.00 0.00 4.04
191 192 2.787567 GCTAGTGAGGGGGCGAGAC 61.788 68.421 0.00 0.00 0.00 3.36
192 193 2.439701 TAGTGAGGGGGCGAGACG 60.440 66.667 0.00 0.00 0.00 4.18
193 194 2.888464 CTAGTGAGGGGGCGAGACGA 62.888 65.000 0.00 0.00 0.00 4.20
194 195 2.888464 TAGTGAGGGGGCGAGACGAG 62.888 65.000 0.00 0.00 0.00 4.18
195 196 4.361971 TGAGGGGGCGAGACGAGT 62.362 66.667 0.00 0.00 0.00 4.18
196 197 3.827898 GAGGGGGCGAGACGAGTG 61.828 72.222 0.00 0.00 0.00 3.51
201 202 4.803426 GGCGAGACGAGTGGGCAG 62.803 72.222 0.00 0.00 0.00 4.85
204 205 3.749064 GAGACGAGTGGGCAGCGA 61.749 66.667 0.00 0.00 0.00 4.93
205 206 3.282745 GAGACGAGTGGGCAGCGAA 62.283 63.158 0.00 0.00 0.00 4.70
206 207 2.125512 GACGAGTGGGCAGCGAAT 60.126 61.111 0.00 0.00 0.00 3.34
207 208 2.434884 ACGAGTGGGCAGCGAATG 60.435 61.111 0.00 0.00 0.00 2.67
208 209 3.197790 CGAGTGGGCAGCGAATGG 61.198 66.667 0.00 0.00 0.00 3.16
209 210 2.268920 GAGTGGGCAGCGAATGGA 59.731 61.111 0.00 0.00 0.00 3.41
210 211 1.817099 GAGTGGGCAGCGAATGGAG 60.817 63.158 0.00 0.00 0.00 3.86
211 212 2.045926 GTGGGCAGCGAATGGAGT 60.046 61.111 0.00 0.00 0.00 3.85
212 213 1.220749 GTGGGCAGCGAATGGAGTA 59.779 57.895 0.00 0.00 0.00 2.59
213 214 0.179045 GTGGGCAGCGAATGGAGTAT 60.179 55.000 0.00 0.00 0.00 2.12
214 215 0.179048 TGGGCAGCGAATGGAGTATG 60.179 55.000 0.00 0.00 0.00 2.39
215 216 0.886490 GGGCAGCGAATGGAGTATGG 60.886 60.000 0.00 0.00 0.00 2.74
216 217 0.106708 GGCAGCGAATGGAGTATGGA 59.893 55.000 0.00 0.00 0.00 3.41
217 218 1.506493 GCAGCGAATGGAGTATGGAG 58.494 55.000 0.00 0.00 0.00 3.86
218 219 1.875576 GCAGCGAATGGAGTATGGAGG 60.876 57.143 0.00 0.00 0.00 4.30
219 220 1.051812 AGCGAATGGAGTATGGAGGG 58.948 55.000 0.00 0.00 0.00 4.30
220 221 1.048601 GCGAATGGAGTATGGAGGGA 58.951 55.000 0.00 0.00 0.00 4.20
221 222 1.001406 GCGAATGGAGTATGGAGGGAG 59.999 57.143 0.00 0.00 0.00 4.30
222 223 1.001406 CGAATGGAGTATGGAGGGAGC 59.999 57.143 0.00 0.00 0.00 4.70
223 224 1.001406 GAATGGAGTATGGAGGGAGCG 59.999 57.143 0.00 0.00 0.00 5.03
224 225 0.105453 ATGGAGTATGGAGGGAGCGT 60.105 55.000 0.00 0.00 0.00 5.07
225 226 0.755698 TGGAGTATGGAGGGAGCGTC 60.756 60.000 0.00 0.00 0.00 5.19
226 227 0.468400 GGAGTATGGAGGGAGCGTCT 60.468 60.000 0.00 0.00 0.00 4.18
227 228 1.404843 GAGTATGGAGGGAGCGTCTT 58.595 55.000 0.00 0.00 0.00 3.01
228 229 1.338655 GAGTATGGAGGGAGCGTCTTC 59.661 57.143 0.00 0.00 0.00 2.87
229 230 1.063567 AGTATGGAGGGAGCGTCTTCT 60.064 52.381 0.00 0.00 0.00 2.85
230 231 1.757699 GTATGGAGGGAGCGTCTTCTT 59.242 52.381 0.00 0.00 0.00 2.52
231 232 2.160721 ATGGAGGGAGCGTCTTCTTA 57.839 50.000 0.00 0.00 0.00 2.10
232 233 2.160721 TGGAGGGAGCGTCTTCTTAT 57.839 50.000 0.00 0.00 0.00 1.73
233 234 3.308035 TGGAGGGAGCGTCTTCTTATA 57.692 47.619 0.00 0.00 0.00 0.98
234 235 3.638860 TGGAGGGAGCGTCTTCTTATAA 58.361 45.455 0.00 0.00 0.00 0.98
235 236 3.383825 TGGAGGGAGCGTCTTCTTATAAC 59.616 47.826 0.00 0.00 0.00 1.89
236 237 3.550436 GGAGGGAGCGTCTTCTTATAACG 60.550 52.174 0.00 0.00 39.33 3.18
237 238 3.285484 AGGGAGCGTCTTCTTATAACGA 58.715 45.455 0.00 0.00 38.65 3.85
238 239 3.315749 AGGGAGCGTCTTCTTATAACGAG 59.684 47.826 0.00 0.00 38.65 4.18
239 240 3.044286 GGAGCGTCTTCTTATAACGAGC 58.956 50.000 0.00 0.00 38.65 5.03
240 241 2.714985 GAGCGTCTTCTTATAACGAGCG 59.285 50.000 0.00 0.00 38.65 5.03
241 242 1.187487 GCGTCTTCTTATAACGAGCGC 59.813 52.381 0.00 0.00 38.65 5.92
242 243 1.779724 CGTCTTCTTATAACGAGCGCC 59.220 52.381 2.29 0.00 38.65 6.53
243 244 1.779724 GTCTTCTTATAACGAGCGCCG 59.220 52.381 15.25 15.25 45.44 6.46
244 245 1.129326 CTTCTTATAACGAGCGCCGG 58.871 55.000 19.73 0.00 43.93 6.13
245 246 0.872881 TTCTTATAACGAGCGCCGGC 60.873 55.000 19.07 19.07 43.93 6.13
255 256 3.358707 GCGCCGGCTGTACCAAAA 61.359 61.111 26.68 0.00 39.03 2.44
256 257 2.559330 CGCCGGCTGTACCAAAAC 59.441 61.111 26.68 0.00 39.03 2.43
257 258 2.959372 GCCGGCTGTACCAAAACC 59.041 61.111 22.15 0.00 39.03 3.27
258 259 1.899534 GCCGGCTGTACCAAAACCA 60.900 57.895 22.15 0.00 39.03 3.67
259 260 1.862602 GCCGGCTGTACCAAAACCAG 61.863 60.000 22.15 0.00 39.03 4.00
262 263 1.081442 GCTGTACCAAAACCAGCGC 60.081 57.895 0.00 0.00 41.80 5.92
263 264 1.206578 CTGTACCAAAACCAGCGCG 59.793 57.895 0.00 0.00 0.00 6.86
264 265 2.127003 GTACCAAAACCAGCGCGC 60.127 61.111 26.66 26.66 0.00 6.86
265 266 3.718097 TACCAAAACCAGCGCGCG 61.718 61.111 28.44 28.44 0.00 6.86
267 268 4.320928 CCAAAACCAGCGCGCGAA 62.321 61.111 37.18 0.00 0.00 4.70
268 269 3.091022 CAAAACCAGCGCGCGAAC 61.091 61.111 37.18 17.71 0.00 3.95
269 270 4.322385 AAAACCAGCGCGCGAACC 62.322 61.111 37.18 16.84 0.00 3.62
273 274 4.445545 CCAGCGCGCGAACCTTTC 62.446 66.667 37.18 14.25 0.00 2.62
274 275 3.414700 CAGCGCGCGAACCTTTCT 61.415 61.111 37.18 16.65 0.00 2.52
275 276 3.112709 AGCGCGCGAACCTTTCTC 61.113 61.111 37.18 12.54 0.00 2.87
276 277 4.485208 GCGCGCGAACCTTTCTCG 62.485 66.667 37.18 0.41 40.57 4.04
281 282 4.485208 CGAACCTTTCTCGCGCGC 62.485 66.667 27.95 23.91 0.00 6.86
282 283 3.112709 GAACCTTTCTCGCGCGCT 61.113 61.111 30.48 6.44 0.00 5.92
283 284 3.354499 GAACCTTTCTCGCGCGCTG 62.354 63.158 30.48 22.06 0.00 5.18
286 287 3.549150 CTTTCTCGCGCGCTGGAG 61.549 66.667 30.48 27.07 0.00 3.86
297 298 3.294493 GCTGGAGCGCCAAAACCA 61.294 61.111 11.38 5.74 45.41 3.67
298 299 2.855514 GCTGGAGCGCCAAAACCAA 61.856 57.895 11.38 0.00 45.41 3.67
299 300 1.966762 CTGGAGCGCCAAAACCAAT 59.033 52.632 11.38 0.00 45.41 3.16
300 301 1.173043 CTGGAGCGCCAAAACCAATA 58.827 50.000 11.38 0.00 45.41 1.90
301 302 1.750778 CTGGAGCGCCAAAACCAATAT 59.249 47.619 11.38 0.00 45.41 1.28
302 303 1.476085 TGGAGCGCCAAAACCAATATG 59.524 47.619 6.75 0.00 42.49 1.78
303 304 1.559831 GAGCGCCAAAACCAATATGC 58.440 50.000 2.29 0.00 0.00 3.14
304 305 0.179140 AGCGCCAAAACCAATATGCG 60.179 50.000 2.29 0.00 44.38 4.73
305 306 2.287059 CGCCAAAACCAATATGCGC 58.713 52.632 0.00 0.00 35.33 6.09
306 307 1.470699 CGCCAAAACCAATATGCGCG 61.471 55.000 0.00 0.00 35.33 6.86
307 308 1.145162 GCCAAAACCAATATGCGCGG 61.145 55.000 8.83 0.00 0.00 6.46
308 309 0.172352 CCAAAACCAATATGCGCGGT 59.828 50.000 8.83 0.00 33.32 5.68
309 310 1.544686 CAAAACCAATATGCGCGGTC 58.455 50.000 8.83 0.00 30.91 4.79
310 311 1.135546 CAAAACCAATATGCGCGGTCA 60.136 47.619 8.83 0.00 30.91 4.02
311 312 1.388547 AAACCAATATGCGCGGTCAT 58.611 45.000 8.83 6.32 30.91 3.06
312 313 0.662619 AACCAATATGCGCGGTCATG 59.337 50.000 8.83 0.00 30.91 3.07
313 314 0.179059 ACCAATATGCGCGGTCATGA 60.179 50.000 8.83 0.00 0.00 3.07
314 315 0.943673 CCAATATGCGCGGTCATGAA 59.056 50.000 8.83 0.00 0.00 2.57
315 316 1.333308 CCAATATGCGCGGTCATGAAA 59.667 47.619 8.83 0.00 0.00 2.69
316 317 2.030893 CCAATATGCGCGGTCATGAAAT 60.031 45.455 8.83 0.00 0.00 2.17
318 319 0.943673 TATGCGCGGTCATGAAATGG 59.056 50.000 8.83 0.00 46.73 3.16
319 320 1.727511 ATGCGCGGTCATGAAATGGG 61.728 55.000 8.83 0.00 46.73 4.00
320 321 2.406616 GCGCGGTCATGAAATGGGT 61.407 57.895 8.83 0.00 46.73 4.51
321 322 1.721487 CGCGGTCATGAAATGGGTC 59.279 57.895 0.00 0.00 46.73 4.46
322 323 1.721487 GCGGTCATGAAATGGGTCG 59.279 57.895 0.00 0.00 46.73 4.79
323 324 1.714899 GCGGTCATGAAATGGGTCGG 61.715 60.000 0.00 0.00 46.73 4.79
324 325 1.714899 CGGTCATGAAATGGGTCGGC 61.715 60.000 0.00 0.00 46.73 5.54
325 326 1.714899 GGTCATGAAATGGGTCGGCG 61.715 60.000 0.00 0.00 46.73 6.46
326 327 1.024579 GTCATGAAATGGGTCGGCGT 61.025 55.000 6.85 0.00 46.73 5.68
327 328 1.024046 TCATGAAATGGGTCGGCGTG 61.024 55.000 6.85 0.00 46.73 5.34
328 329 1.002624 ATGAAATGGGTCGGCGTGT 60.003 52.632 6.85 0.00 0.00 4.49
329 330 0.608035 ATGAAATGGGTCGGCGTGTT 60.608 50.000 6.85 0.00 0.00 3.32
330 331 1.209127 GAAATGGGTCGGCGTGTTG 59.791 57.895 6.85 0.00 0.00 3.33
331 332 2.195123 GAAATGGGTCGGCGTGTTGG 62.195 60.000 6.85 0.00 0.00 3.77
332 333 4.715523 ATGGGTCGGCGTGTTGGG 62.716 66.667 6.85 0.00 0.00 4.12
341 342 4.012895 CGTGTTGGGCGCACTGTC 62.013 66.667 12.74 1.30 34.91 3.51
342 343 4.012895 GTGTTGGGCGCACTGTCG 62.013 66.667 12.74 0.00 34.30 4.35
343 344 4.228567 TGTTGGGCGCACTGTCGA 62.229 61.111 12.74 0.00 0.00 4.20
344 345 2.742372 GTTGGGCGCACTGTCGAT 60.742 61.111 12.74 0.00 0.00 3.59
345 346 2.031919 TTGGGCGCACTGTCGATT 59.968 55.556 12.74 0.00 0.00 3.34
346 347 2.032634 TTGGGCGCACTGTCGATTC 61.033 57.895 12.74 0.00 0.00 2.52
347 348 2.434185 GGGCGCACTGTCGATTCA 60.434 61.111 10.83 0.00 0.00 2.57
348 349 2.032634 GGGCGCACTGTCGATTCAA 61.033 57.895 10.83 0.00 0.00 2.69
349 350 1.573829 GGGCGCACTGTCGATTCAAA 61.574 55.000 10.83 0.00 0.00 2.69
350 351 0.447801 GGCGCACTGTCGATTCAAAT 59.552 50.000 10.83 0.00 0.00 2.32
351 352 1.529826 GGCGCACTGTCGATTCAAATC 60.530 52.381 10.83 0.00 0.00 2.17
352 353 1.394917 GCGCACTGTCGATTCAAATCT 59.605 47.619 0.30 0.00 33.24 2.40
353 354 2.603110 GCGCACTGTCGATTCAAATCTA 59.397 45.455 0.30 0.00 33.24 1.98
354 355 3.062099 GCGCACTGTCGATTCAAATCTAA 59.938 43.478 0.30 0.00 33.24 2.10
355 356 4.260375 GCGCACTGTCGATTCAAATCTAAT 60.260 41.667 0.30 0.00 33.24 1.73
356 357 5.727791 GCGCACTGTCGATTCAAATCTAATT 60.728 40.000 0.30 0.00 33.24 1.40
357 358 5.674148 CGCACTGTCGATTCAAATCTAATTG 59.326 40.000 0.00 0.00 33.24 2.32
358 359 6.455513 CGCACTGTCGATTCAAATCTAATTGA 60.456 38.462 0.00 0.00 37.53 2.57
359 360 6.904011 GCACTGTCGATTCAAATCTAATTGAG 59.096 38.462 0.00 0.00 40.21 3.02
360 361 7.404985 CACTGTCGATTCAAATCTAATTGAGG 58.595 38.462 0.00 0.00 40.21 3.86
361 362 6.540189 ACTGTCGATTCAAATCTAATTGAGGG 59.460 38.462 0.00 0.00 40.21 4.30
362 363 6.414732 TGTCGATTCAAATCTAATTGAGGGT 58.585 36.000 0.00 0.00 40.21 4.34
363 364 6.316140 TGTCGATTCAAATCTAATTGAGGGTG 59.684 38.462 0.00 0.00 40.21 4.61
364 365 6.538742 GTCGATTCAAATCTAATTGAGGGTGA 59.461 38.462 0.00 0.00 40.21 4.02
365 366 7.065803 GTCGATTCAAATCTAATTGAGGGTGAA 59.934 37.037 0.00 0.00 40.21 3.18
366 367 7.065803 TCGATTCAAATCTAATTGAGGGTGAAC 59.934 37.037 1.58 0.00 40.21 3.18
367 368 6.494893 TTCAAATCTAATTGAGGGTGAACG 57.505 37.500 0.00 0.00 40.21 3.95
368 369 5.556915 TCAAATCTAATTGAGGGTGAACGT 58.443 37.500 0.00 0.00 34.50 3.99
369 370 5.642063 TCAAATCTAATTGAGGGTGAACGTC 59.358 40.000 0.00 0.00 34.50 4.34
370 371 3.226346 TCTAATTGAGGGTGAACGTCG 57.774 47.619 0.00 0.00 36.79 5.12
371 372 2.094390 TCTAATTGAGGGTGAACGTCGG 60.094 50.000 0.00 0.00 36.79 4.79
372 373 0.321298 AATTGAGGGTGAACGTCGGG 60.321 55.000 0.00 0.00 36.79 5.14
373 374 2.798148 ATTGAGGGTGAACGTCGGGC 62.798 60.000 0.00 0.00 36.79 6.13
391 392 3.595758 GGGCGGGCGATCCAAATG 61.596 66.667 0.00 0.00 34.36 2.32
392 393 3.595758 GGCGGGCGATCCAAATGG 61.596 66.667 0.00 0.00 34.36 3.16
404 405 3.495670 TCCAAATGGATAAAAACGCCG 57.504 42.857 0.00 0.00 39.78 6.46
405 406 2.820787 TCCAAATGGATAAAAACGCCGT 59.179 40.909 0.00 0.00 39.78 5.68
406 407 3.119779 TCCAAATGGATAAAAACGCCGTC 60.120 43.478 0.00 0.00 39.78 4.79
407 408 3.175929 CAAATGGATAAAAACGCCGTCC 58.824 45.455 0.00 0.00 0.00 4.79
408 409 2.116827 ATGGATAAAAACGCCGTCCA 57.883 45.000 0.00 0.00 0.00 4.02
409 410 2.116827 TGGATAAAAACGCCGTCCAT 57.883 45.000 0.00 0.00 0.00 3.41
410 411 2.438411 TGGATAAAAACGCCGTCCATT 58.562 42.857 0.00 0.00 0.00 3.16
411 412 2.820787 TGGATAAAAACGCCGTCCATTT 59.179 40.909 0.00 0.00 0.00 2.32
412 413 4.008330 TGGATAAAAACGCCGTCCATTTA 58.992 39.130 0.00 0.00 0.00 1.40
413 414 4.095185 TGGATAAAAACGCCGTCCATTTAG 59.905 41.667 0.00 0.00 0.00 1.85
414 415 4.496840 GGATAAAAACGCCGTCCATTTAGG 60.497 45.833 0.00 0.00 39.47 2.69
415 416 1.900245 AAAACGCCGTCCATTTAGGT 58.100 45.000 0.00 0.00 39.02 3.08
416 417 1.445871 AAACGCCGTCCATTTAGGTC 58.554 50.000 0.00 0.00 39.02 3.85
417 418 0.738412 AACGCCGTCCATTTAGGTCG 60.738 55.000 0.00 0.00 46.50 4.79
420 421 4.120085 CGTCCATTTAGGTCGGCC 57.880 61.111 0.00 0.00 43.80 6.13
421 422 1.523032 CGTCCATTTAGGTCGGCCC 60.523 63.158 0.08 0.00 43.80 5.80
422 423 1.523032 GTCCATTTAGGTCGGCCCG 60.523 63.158 0.08 0.00 38.74 6.13
423 424 1.991167 TCCATTTAGGTCGGCCCGT 60.991 57.895 0.08 0.00 38.74 5.28
424 425 1.078001 CCATTTAGGTCGGCCCGTT 60.078 57.895 0.08 0.00 38.74 4.44
425 426 1.093496 CCATTTAGGTCGGCCCGTTC 61.093 60.000 0.08 0.00 38.74 3.95
426 427 0.391927 CATTTAGGTCGGCCCGTTCA 60.392 55.000 0.08 0.00 38.74 3.18
427 428 0.325602 ATTTAGGTCGGCCCGTTCAA 59.674 50.000 0.08 0.00 38.74 2.69
428 429 0.108207 TTTAGGTCGGCCCGTTCAAA 59.892 50.000 0.08 0.00 38.74 2.69
429 430 0.325602 TTAGGTCGGCCCGTTCAAAT 59.674 50.000 0.08 0.00 38.74 2.32
430 431 0.325602 TAGGTCGGCCCGTTCAAATT 59.674 50.000 0.08 0.00 38.74 1.82
431 432 1.211709 GGTCGGCCCGTTCAAATTG 59.788 57.895 1.63 0.00 0.00 2.32
432 433 1.211709 GTCGGCCCGTTCAAATTGG 59.788 57.895 1.63 0.00 0.00 3.16
433 434 1.228306 TCGGCCCGTTCAAATTGGT 60.228 52.632 1.63 0.00 0.00 3.67
434 435 1.211709 CGGCCCGTTCAAATTGGTC 59.788 57.895 0.00 0.00 0.00 4.02
435 436 1.241315 CGGCCCGTTCAAATTGGTCT 61.241 55.000 0.00 0.00 0.00 3.85
460 461 3.513680 ATTACGCATAACTGTCGGACA 57.486 42.857 10.88 10.88 0.00 4.02
461 462 3.300852 TTACGCATAACTGTCGGACAA 57.699 42.857 12.54 0.00 0.00 3.18
464 465 3.071479 ACGCATAACTGTCGGACAATTT 58.929 40.909 10.31 9.56 0.00 1.82
465 466 3.120338 ACGCATAACTGTCGGACAATTTG 60.120 43.478 10.31 9.42 0.00 2.32
471 473 2.803956 ACTGTCGGACAATTTGTTACCG 59.196 45.455 18.66 18.66 38.59 4.02
478 480 4.451774 CGGACAATTTGTTACCGAACCTTA 59.548 41.667 19.56 0.00 39.30 2.69
481 483 6.804783 GGACAATTTGTTACCGAACCTTATTG 59.195 38.462 3.08 0.00 35.21 1.90
486 488 1.930567 TACCGAACCTTATTGAGCGC 58.069 50.000 0.00 0.00 0.00 5.92
496 498 4.335594 ACCTTATTGAGCGCTGGTTATTTC 59.664 41.667 18.48 0.00 0.00 2.17
502 504 1.196808 AGCGCTGGTTATTTCACGTTG 59.803 47.619 10.39 0.00 0.00 4.10
510 512 3.181500 GGTTATTTCACGTTGGAGATGCC 60.181 47.826 0.00 0.00 37.10 4.40
520 522 0.982852 TGGAGATGCCCTTGGACGAT 60.983 55.000 0.00 0.00 34.97 3.73
564 566 1.067212 ACTCCAGACGCGATCATAACC 59.933 52.381 15.93 0.00 0.00 2.85
586 591 3.488553 CGGAGGTTTGGTTTGACTTTGTC 60.489 47.826 0.00 0.00 0.00 3.18
588 593 4.202020 GGAGGTTTGGTTTGACTTTGTCTC 60.202 45.833 0.00 0.00 33.15 3.36
607 612 5.174395 GTCTCTGTGGACGAGTTACTACTA 58.826 45.833 0.00 0.00 33.84 1.82
733 761 1.938861 CAACCTTGACCGTTCGTGG 59.061 57.895 0.00 0.00 0.00 4.94
738 766 1.227704 TTGACCGTTCGTGGCATGT 60.228 52.632 6.60 0.00 0.00 3.21
746 775 2.769376 GTTCGTGGCATGTACATTTCG 58.231 47.619 5.37 8.70 0.00 3.46
747 776 2.087501 TCGTGGCATGTACATTTCGT 57.912 45.000 5.37 0.00 0.00 3.85
757 786 6.403200 GGCATGTACATTTCGTGTTGATTAGT 60.403 38.462 5.37 0.00 42.29 2.24
762 791 6.094739 ACATTTCGTGTTGATTAGTCGATG 57.905 37.500 0.00 0.00 38.01 3.84
837 873 2.420408 GGGAGCAGTACTCGACTACTCT 60.420 54.545 0.00 3.78 44.96 3.24
838 874 3.272581 GGAGCAGTACTCGACTACTCTT 58.727 50.000 0.00 0.00 44.96 2.85
843 892 2.420722 AGTACTCGACTACTCTTGCTGC 59.579 50.000 0.00 0.00 36.27 5.25
932 2384 1.080298 CGTGTATAAAACGGCCTGCA 58.920 50.000 0.00 0.00 37.39 4.41
933 2385 1.201987 CGTGTATAAAACGGCCTGCAC 60.202 52.381 0.00 0.00 37.39 4.57
934 2386 1.807742 GTGTATAAAACGGCCTGCACA 59.192 47.619 0.00 0.00 0.00 4.57
935 2387 2.226912 GTGTATAAAACGGCCTGCACAA 59.773 45.455 0.00 0.00 0.00 3.33
936 2388 2.885266 TGTATAAAACGGCCTGCACAAA 59.115 40.909 0.00 0.00 0.00 2.83
941 2401 3.215568 CGGCCTGCACAAACCACA 61.216 61.111 0.00 0.00 0.00 4.17
951 2411 2.543653 GCACAAACCACAAAGGCACTAG 60.544 50.000 0.00 0.00 43.14 2.57
958 2418 2.487265 CCACAAAGGCACTAGGACAACT 60.487 50.000 0.00 0.00 38.49 3.16
967 2427 3.495453 GCACTAGGACAACTACCCAAACA 60.495 47.826 0.00 0.00 0.00 2.83
968 2428 4.710324 CACTAGGACAACTACCCAAACAA 58.290 43.478 0.00 0.00 0.00 2.83
970 2430 5.238650 CACTAGGACAACTACCCAAACAAAG 59.761 44.000 0.00 0.00 0.00 2.77
971 2431 2.956333 AGGACAACTACCCAAACAAAGC 59.044 45.455 0.00 0.00 0.00 3.51
974 2434 3.100671 ACAACTACCCAAACAAAGCCAA 58.899 40.909 0.00 0.00 0.00 4.52
1350 2848 4.475135 GGCCTGGACTTCCCGCTC 62.475 72.222 0.00 0.00 37.93 5.03
1351 2849 3.706373 GCCTGGACTTCCCGCTCA 61.706 66.667 0.00 0.00 37.93 4.26
1935 3458 1.318576 TCGCCGAGATGATTCAGCTA 58.681 50.000 4.06 0.00 26.98 3.32
1976 3499 1.202417 CGGCCAAGAGAAGCTCGAATA 60.202 52.381 2.24 0.00 35.36 1.75
1991 3514 1.948834 CGAATATGTGCCCTGCAATGA 59.051 47.619 0.00 0.00 41.47 2.57
1992 3515 2.031420 CGAATATGTGCCCTGCAATGAG 60.031 50.000 0.00 0.00 41.47 2.90
1996 3525 1.378250 GTGCCCTGCAATGAGCTCT 60.378 57.895 16.19 0.00 45.94 4.09
2009 3538 2.621070 TGAGCTCTAGGAAACTGGGTT 58.379 47.619 16.19 0.00 43.88 4.11
2011 3540 4.164981 TGAGCTCTAGGAAACTGGGTTTA 58.835 43.478 16.19 0.00 43.88 2.01
2021 3550 4.647853 GGAAACTGGGTTTACTTTGGACTT 59.352 41.667 0.00 0.00 35.77 3.01
2022 3551 5.221185 GGAAACTGGGTTTACTTTGGACTTC 60.221 44.000 0.00 0.00 35.77 3.01
2023 3552 4.790718 ACTGGGTTTACTTTGGACTTCT 57.209 40.909 0.00 0.00 0.00 2.85
2024 3553 4.461198 ACTGGGTTTACTTTGGACTTCTG 58.539 43.478 0.00 0.00 0.00 3.02
2025 3554 4.165372 ACTGGGTTTACTTTGGACTTCTGA 59.835 41.667 0.00 0.00 0.00 3.27
2028 3557 5.163141 TGGGTTTACTTTGGACTTCTGATGA 60.163 40.000 0.00 0.00 0.00 2.92
2029 3558 5.768164 GGGTTTACTTTGGACTTCTGATGAA 59.232 40.000 0.00 0.00 0.00 2.57
2032 3598 7.355778 GTTTACTTTGGACTTCTGATGAACAG 58.644 38.462 0.00 0.00 46.97 3.16
2036 3602 2.038952 TGGACTTCTGATGAACAGGGTG 59.961 50.000 0.00 0.00 45.76 4.61
2037 3603 2.039084 GGACTTCTGATGAACAGGGTGT 59.961 50.000 0.00 0.00 45.76 4.16
2040 3606 0.984230 TCTGATGAACAGGGTGTCCC 59.016 55.000 0.00 0.00 45.76 4.46
2050 3616 2.722201 GGGTGTCCCTACTGCCGAG 61.722 68.421 0.00 0.00 41.34 4.63
2066 3632 9.704098 CTACTGCCGAGAATAAAAATTAAGAAC 57.296 33.333 0.00 0.00 0.00 3.01
2067 3633 7.241376 ACTGCCGAGAATAAAAATTAAGAACG 58.759 34.615 0.00 0.00 0.00 3.95
2068 3634 6.025280 TGCCGAGAATAAAAATTAAGAACGC 58.975 36.000 0.00 0.00 0.00 4.84
2070 3636 6.745907 GCCGAGAATAAAAATTAAGAACGCTT 59.254 34.615 0.00 0.00 38.15 4.68
2095 3670 7.924103 TGCGGCGTATAATATATCTGTAATG 57.076 36.000 9.37 0.00 0.00 1.90
2121 3696 5.363939 ACTATCAAGCAGCTGATTAAGACC 58.636 41.667 18.24 0.00 37.27 3.85
2131 3706 5.404968 CAGCTGATTAAGACCTCGATGATTC 59.595 44.000 8.42 0.00 0.00 2.52
2136 3714 3.834489 AAGACCTCGATGATTCATGCT 57.166 42.857 3.32 0.00 0.00 3.79
2137 3715 4.944619 AAGACCTCGATGATTCATGCTA 57.055 40.909 3.32 0.00 0.00 3.49
2138 3716 4.517952 AGACCTCGATGATTCATGCTAG 57.482 45.455 3.32 0.00 0.00 3.42
2207 4044 2.409378 GGCATTTCAAGTGCAACGAATG 59.591 45.455 7.25 0.00 45.86 2.67
2232 4069 4.006319 CCTCCTCGCAGAAAAAGAAGAAT 58.994 43.478 0.00 0.00 34.09 2.40
2233 4070 5.046591 TCCTCCTCGCAGAAAAAGAAGAATA 60.047 40.000 0.00 0.00 34.09 1.75
2234 4071 5.064071 CCTCCTCGCAGAAAAAGAAGAATAC 59.936 44.000 0.00 0.00 34.09 1.89
2365 4203 1.647346 TGGTTTTAGCGAGCGGTATG 58.353 50.000 2.47 0.00 0.00 2.39
2366 4204 0.935196 GGTTTTAGCGAGCGGTATGG 59.065 55.000 2.47 0.00 0.00 2.74
2367 4205 1.648504 GTTTTAGCGAGCGGTATGGT 58.351 50.000 2.47 0.00 0.00 3.55
2368 4206 1.326548 GTTTTAGCGAGCGGTATGGTG 59.673 52.381 2.47 0.00 0.00 4.17
2369 4207 0.808453 TTTAGCGAGCGGTATGGTGC 60.808 55.000 2.47 0.00 0.00 5.01
2370 4208 2.947118 TTAGCGAGCGGTATGGTGCG 62.947 60.000 2.47 0.00 35.87 5.34
2371 4209 4.865761 GCGAGCGGTATGGTGCGA 62.866 66.667 0.00 0.00 35.87 5.10
2372 4210 2.655364 CGAGCGGTATGGTGCGAG 60.655 66.667 0.00 0.00 35.87 5.03
2373 4211 2.279517 GAGCGGTATGGTGCGAGG 60.280 66.667 0.00 0.00 35.87 4.63
2374 4212 2.758327 AGCGGTATGGTGCGAGGA 60.758 61.111 0.00 0.00 35.87 3.71
2375 4213 2.279517 GCGGTATGGTGCGAGGAG 60.280 66.667 0.00 0.00 0.00 3.69
2376 4214 2.782222 GCGGTATGGTGCGAGGAGA 61.782 63.158 0.00 0.00 0.00 3.71
2377 4215 1.065928 CGGTATGGTGCGAGGAGAC 59.934 63.158 0.00 0.00 0.00 3.36
2378 4216 1.663379 CGGTATGGTGCGAGGAGACA 61.663 60.000 0.00 0.00 0.00 3.41
2379 4217 0.753262 GGTATGGTGCGAGGAGACAT 59.247 55.000 0.00 0.00 0.00 3.06
2380 4218 1.269831 GGTATGGTGCGAGGAGACATC 60.270 57.143 0.00 0.00 0.00 3.06
2391 4229 2.700722 GGAGACATCCCAGGTTCTTC 57.299 55.000 0.00 0.00 40.03 2.87
2392 4230 1.134670 GGAGACATCCCAGGTTCTTCG 60.135 57.143 0.00 0.00 40.03 3.79
2393 4231 0.250513 AGACATCCCAGGTTCTTCGC 59.749 55.000 0.00 0.00 0.00 4.70
2394 4232 0.744771 GACATCCCAGGTTCTTCGCC 60.745 60.000 0.00 0.00 0.00 5.54
2395 4233 1.815421 CATCCCAGGTTCTTCGCCG 60.815 63.158 0.00 0.00 0.00 6.46
2396 4234 3.031417 ATCCCAGGTTCTTCGCCGG 62.031 63.158 0.00 0.00 0.00 6.13
2397 4235 4.778143 CCCAGGTTCTTCGCCGGG 62.778 72.222 2.18 0.00 40.39 5.73
2401 4239 2.750237 GGTTCTTCGCCGGGCATT 60.750 61.111 20.71 0.00 0.00 3.56
2437 4275 6.926630 AAACACCTCCTTTATTAATTGGCA 57.073 33.333 0.00 0.00 0.00 4.92
2502 4341 3.424703 GGGGATCATCCAACCATACATG 58.575 50.000 5.89 0.00 38.64 3.21
2684 4523 4.987408 TCAACCACGTCCGAATTATCTA 57.013 40.909 0.00 0.00 0.00 1.98
2780 4619 7.278646 CAGCAGTAAAAGCATCATAACAGACTA 59.721 37.037 0.00 0.00 0.00 2.59
2858 4697 4.691216 CACCTACTGAACCTTCAAGTAAGC 59.309 45.833 0.00 0.00 36.64 3.09
2861 4700 2.224793 ACTGAACCTTCAAGTAAGCCCC 60.225 50.000 0.00 0.00 36.64 5.80
2962 4801 4.201773 CGTGGTGAATTCGCTGCTATAAAA 60.202 41.667 18.02 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.569701 AGTTTGGGTCGTAAAGTCGTAGA 59.430 43.478 0.00 0.00 0.00 2.59
5 6 3.905784 AGTTTGGGTCGTAAAGTCGTAG 58.094 45.455 0.00 0.00 0.00 3.51
6 7 5.219633 GTTAGTTTGGGTCGTAAAGTCGTA 58.780 41.667 0.00 0.00 0.00 3.43
7 8 2.896745 AGTTTGGGTCGTAAAGTCGT 57.103 45.000 0.00 0.00 0.00 4.34
8 9 3.429881 GGTTAGTTTGGGTCGTAAAGTCG 59.570 47.826 0.00 0.00 0.00 4.18
9 10 3.748048 GGGTTAGTTTGGGTCGTAAAGTC 59.252 47.826 0.00 0.00 0.00 3.01
10 11 3.392285 AGGGTTAGTTTGGGTCGTAAAGT 59.608 43.478 0.00 0.00 0.00 2.66
11 12 4.011966 AGGGTTAGTTTGGGTCGTAAAG 57.988 45.455 0.00 0.00 0.00 1.85
12 13 4.102996 AGAAGGGTTAGTTTGGGTCGTAAA 59.897 41.667 0.00 0.00 0.00 2.01
13 14 3.647590 AGAAGGGTTAGTTTGGGTCGTAA 59.352 43.478 0.00 0.00 0.00 3.18
14 15 3.007182 CAGAAGGGTTAGTTTGGGTCGTA 59.993 47.826 0.00 0.00 0.00 3.43
15 16 2.052468 AGAAGGGTTAGTTTGGGTCGT 58.948 47.619 0.00 0.00 0.00 4.34
16 17 2.038033 TCAGAAGGGTTAGTTTGGGTCG 59.962 50.000 0.00 0.00 0.00 4.79
17 18 3.782656 TCAGAAGGGTTAGTTTGGGTC 57.217 47.619 0.00 0.00 0.00 4.46
18 19 4.354087 AGAATCAGAAGGGTTAGTTTGGGT 59.646 41.667 0.00 0.00 0.00 4.51
19 20 4.923415 AGAATCAGAAGGGTTAGTTTGGG 58.077 43.478 0.00 0.00 0.00 4.12
20 21 5.581085 CGTAGAATCAGAAGGGTTAGTTTGG 59.419 44.000 0.00 0.00 0.00 3.28
21 22 6.395629 TCGTAGAATCAGAAGGGTTAGTTTG 58.604 40.000 0.00 0.00 0.00 2.93
22 23 6.600882 TCGTAGAATCAGAAGGGTTAGTTT 57.399 37.500 0.00 0.00 0.00 2.66
23 24 6.793505 ATCGTAGAATCAGAAGGGTTAGTT 57.206 37.500 0.00 0.00 43.58 2.24
24 25 6.793505 AATCGTAGAATCAGAAGGGTTAGT 57.206 37.500 0.00 0.00 43.58 2.24
25 26 7.011482 CCAAAATCGTAGAATCAGAAGGGTTAG 59.989 40.741 0.00 0.00 43.58 2.34
26 27 6.821665 CCAAAATCGTAGAATCAGAAGGGTTA 59.178 38.462 0.00 0.00 43.58 2.85
27 28 5.648092 CCAAAATCGTAGAATCAGAAGGGTT 59.352 40.000 0.00 0.00 43.58 4.11
28 29 5.186198 CCAAAATCGTAGAATCAGAAGGGT 58.814 41.667 0.00 0.00 43.58 4.34
29 30 5.186198 ACCAAAATCGTAGAATCAGAAGGG 58.814 41.667 0.00 0.00 43.58 3.95
30 31 6.371548 TGAACCAAAATCGTAGAATCAGAAGG 59.628 38.462 0.00 0.00 43.58 3.46
31 32 7.364522 TGAACCAAAATCGTAGAATCAGAAG 57.635 36.000 0.00 0.00 43.58 2.85
32 33 7.921786 ATGAACCAAAATCGTAGAATCAGAA 57.078 32.000 0.00 0.00 43.58 3.02
33 34 8.474831 TCTATGAACCAAAATCGTAGAATCAGA 58.525 33.333 3.62 0.00 43.58 3.27
34 35 8.648557 TCTATGAACCAAAATCGTAGAATCAG 57.351 34.615 3.62 0.00 43.58 2.90
39 40 9.745880 GTAGATTCTATGAACCAAAATCGTAGA 57.254 33.333 0.00 2.23 41.40 2.59
40 41 9.529325 TGTAGATTCTATGAACCAAAATCGTAG 57.471 33.333 0.00 0.00 37.62 3.51
42 43 8.964476 ATGTAGATTCTATGAACCAAAATCGT 57.036 30.769 0.00 0.00 32.82 3.73
49 50 9.878667 TCGTAAAAATGTAGATTCTATGAACCA 57.121 29.630 0.00 0.00 0.00 3.67
60 61 9.698309 CACTATCAGGATCGTAAAAATGTAGAT 57.302 33.333 0.00 0.00 0.00 1.98
61 62 8.909923 TCACTATCAGGATCGTAAAAATGTAGA 58.090 33.333 0.00 0.00 0.00 2.59
62 63 9.529325 TTCACTATCAGGATCGTAAAAATGTAG 57.471 33.333 0.00 0.00 0.00 2.74
63 64 9.529325 CTTCACTATCAGGATCGTAAAAATGTA 57.471 33.333 0.00 0.00 0.00 2.29
64 65 8.258007 TCTTCACTATCAGGATCGTAAAAATGT 58.742 33.333 0.00 0.00 0.00 2.71
65 66 8.648557 TCTTCACTATCAGGATCGTAAAAATG 57.351 34.615 0.00 0.00 0.00 2.32
66 67 9.838339 AATCTTCACTATCAGGATCGTAAAAAT 57.162 29.630 0.00 0.00 0.00 1.82
67 68 9.314321 GAATCTTCACTATCAGGATCGTAAAAA 57.686 33.333 0.00 0.00 0.00 1.94
68 69 8.696374 AGAATCTTCACTATCAGGATCGTAAAA 58.304 33.333 0.00 0.00 0.00 1.52
69 70 8.239038 AGAATCTTCACTATCAGGATCGTAAA 57.761 34.615 0.00 0.00 0.00 2.01
70 71 7.825331 AGAATCTTCACTATCAGGATCGTAA 57.175 36.000 0.00 0.00 0.00 3.18
71 72 7.117956 CGTAGAATCTTCACTATCAGGATCGTA 59.882 40.741 0.00 0.00 0.00 3.43
72 73 6.072948 CGTAGAATCTTCACTATCAGGATCGT 60.073 42.308 0.00 0.00 0.00 3.73
73 74 6.147985 TCGTAGAATCTTCACTATCAGGATCG 59.852 42.308 0.00 0.00 0.00 3.69
74 75 7.441890 TCGTAGAATCTTCACTATCAGGATC 57.558 40.000 0.00 0.00 0.00 3.36
75 76 8.415950 AATCGTAGAATCTTCACTATCAGGAT 57.584 34.615 0.00 0.00 43.58 3.24
76 77 7.825331 AATCGTAGAATCTTCACTATCAGGA 57.175 36.000 0.00 0.00 43.58 3.86
77 78 7.095857 GCAAATCGTAGAATCTTCACTATCAGG 60.096 40.741 0.00 0.00 43.58 3.86
78 79 7.357941 CGCAAATCGTAGAATCTTCACTATCAG 60.358 40.741 0.00 0.00 43.58 2.90
79 80 6.417930 CGCAAATCGTAGAATCTTCACTATCA 59.582 38.462 0.00 0.00 43.58 2.15
80 81 6.637254 TCGCAAATCGTAGAATCTTCACTATC 59.363 38.462 0.00 0.00 43.58 2.08
81 82 6.504398 TCGCAAATCGTAGAATCTTCACTAT 58.496 36.000 0.00 0.00 43.58 2.12
82 83 5.886992 TCGCAAATCGTAGAATCTTCACTA 58.113 37.500 0.00 0.00 43.58 2.74
83 84 4.744570 TCGCAAATCGTAGAATCTTCACT 58.255 39.130 0.00 0.00 43.58 3.41
84 85 5.643339 ATCGCAAATCGTAGAATCTTCAC 57.357 39.130 0.00 0.00 43.58 3.18
85 86 6.504398 AGTATCGCAAATCGTAGAATCTTCA 58.496 36.000 0.00 0.00 43.58 3.02
86 87 6.994868 AGTATCGCAAATCGTAGAATCTTC 57.005 37.500 0.00 0.00 43.58 2.87
87 88 6.862090 GGTAGTATCGCAAATCGTAGAATCTT 59.138 38.462 0.00 0.00 43.58 2.40
88 89 6.016527 TGGTAGTATCGCAAATCGTAGAATCT 60.017 38.462 0.00 0.00 43.58 2.40
89 90 6.147581 TGGTAGTATCGCAAATCGTAGAATC 58.852 40.000 0.00 0.00 43.58 2.52
90 91 6.080648 TGGTAGTATCGCAAATCGTAGAAT 57.919 37.500 0.00 0.00 43.58 2.40
91 92 5.503662 TGGTAGTATCGCAAATCGTAGAA 57.496 39.130 0.00 0.00 43.58 2.10
92 93 5.700722 ATGGTAGTATCGCAAATCGTAGA 57.299 39.130 0.00 0.00 45.75 2.59
93 94 5.118664 CCAATGGTAGTATCGCAAATCGTAG 59.881 44.000 0.00 0.00 39.67 3.51
94 95 4.986034 CCAATGGTAGTATCGCAAATCGTA 59.014 41.667 0.00 0.00 39.67 3.43
95 96 3.807622 CCAATGGTAGTATCGCAAATCGT 59.192 43.478 0.00 0.00 39.67 3.73
96 97 4.055360 TCCAATGGTAGTATCGCAAATCG 58.945 43.478 0.00 0.00 40.15 3.34
97 98 4.083802 GCTCCAATGGTAGTATCGCAAATC 60.084 45.833 0.00 0.00 0.00 2.17
98 99 3.815401 GCTCCAATGGTAGTATCGCAAAT 59.185 43.478 0.00 0.00 0.00 2.32
99 100 3.118408 AGCTCCAATGGTAGTATCGCAAA 60.118 43.478 0.00 0.00 0.00 3.68
100 101 2.434336 AGCTCCAATGGTAGTATCGCAA 59.566 45.455 0.00 0.00 0.00 4.85
101 102 2.039418 AGCTCCAATGGTAGTATCGCA 58.961 47.619 0.00 0.00 0.00 5.10
102 103 2.821991 AGCTCCAATGGTAGTATCGC 57.178 50.000 0.00 0.00 0.00 4.58
103 104 3.004419 TCGAAGCTCCAATGGTAGTATCG 59.996 47.826 0.00 9.66 0.00 2.92
104 105 4.585955 TCGAAGCTCCAATGGTAGTATC 57.414 45.455 0.00 0.00 0.00 2.24
105 106 4.021016 GGATCGAAGCTCCAATGGTAGTAT 60.021 45.833 0.00 0.00 32.72 2.12
106 107 3.321111 GGATCGAAGCTCCAATGGTAGTA 59.679 47.826 0.00 0.00 32.72 1.82
107 108 2.103263 GGATCGAAGCTCCAATGGTAGT 59.897 50.000 0.00 0.00 32.72 2.73
108 109 2.760374 GGATCGAAGCTCCAATGGTAG 58.240 52.381 0.00 0.00 32.72 3.18
109 110 1.068588 CGGATCGAAGCTCCAATGGTA 59.931 52.381 0.00 0.00 32.72 3.25
110 111 0.179073 CGGATCGAAGCTCCAATGGT 60.179 55.000 0.00 0.00 32.72 3.55
111 112 0.104855 TCGGATCGAAGCTCCAATGG 59.895 55.000 4.50 0.00 31.06 3.16
112 113 2.160822 ATCGGATCGAAGCTCCAATG 57.839 50.000 4.50 0.00 39.99 2.82
113 114 2.103094 TGAATCGGATCGAAGCTCCAAT 59.897 45.455 4.50 0.00 39.99 3.16
114 115 1.480545 TGAATCGGATCGAAGCTCCAA 59.519 47.619 4.50 0.00 39.99 3.53
115 116 1.067669 CTGAATCGGATCGAAGCTCCA 59.932 52.381 4.50 0.00 39.99 3.86
116 117 1.338337 TCTGAATCGGATCGAAGCTCC 59.662 52.381 0.00 0.00 39.99 4.70
117 118 2.783828 TCTGAATCGGATCGAAGCTC 57.216 50.000 0.00 0.00 39.99 4.09
118 119 3.648009 GATTCTGAATCGGATCGAAGCT 58.352 45.455 14.08 0.00 39.99 3.74
135 136 2.271800 AGGTTGTCAGAATCGCGATTC 58.728 47.619 41.15 41.15 45.66 2.52
136 137 2.386661 AGGTTGTCAGAATCGCGATT 57.613 45.000 32.97 32.97 0.00 3.34
137 138 2.386661 AAGGTTGTCAGAATCGCGAT 57.613 45.000 17.62 17.62 0.00 4.58
138 139 2.602878 GTAAGGTTGTCAGAATCGCGA 58.397 47.619 13.09 13.09 0.00 5.87
139 140 1.320555 CGTAAGGTTGTCAGAATCGCG 59.679 52.381 0.00 0.00 0.00 5.87
140 141 1.060698 GCGTAAGGTTGTCAGAATCGC 59.939 52.381 0.00 0.00 38.28 4.58
141 142 2.333926 TGCGTAAGGTTGTCAGAATCG 58.666 47.619 0.00 0.00 38.28 3.34
142 143 3.585862 TCTGCGTAAGGTTGTCAGAATC 58.414 45.455 0.00 0.00 31.62 2.52
143 144 3.589988 CTCTGCGTAAGGTTGTCAGAAT 58.410 45.455 0.00 0.00 33.93 2.40
144 145 2.288825 CCTCTGCGTAAGGTTGTCAGAA 60.289 50.000 0.00 0.00 33.93 3.02
145 146 1.272490 CCTCTGCGTAAGGTTGTCAGA 59.728 52.381 0.00 0.00 38.28 3.27
146 147 1.714794 CCTCTGCGTAAGGTTGTCAG 58.285 55.000 0.00 0.00 38.28 3.51
147 148 0.320421 GCCTCTGCGTAAGGTTGTCA 60.320 55.000 1.38 0.00 36.21 3.58
148 149 2.457080 GCCTCTGCGTAAGGTTGTC 58.543 57.895 1.38 0.00 36.21 3.18
149 150 4.695560 GCCTCTGCGTAAGGTTGT 57.304 55.556 1.38 0.00 36.21 3.32
159 160 3.477224 CTAGCCTCGTCGCCTCTGC 62.477 68.421 0.00 0.00 0.00 4.26
160 161 2.115911 ACTAGCCTCGTCGCCTCTG 61.116 63.158 0.00 0.00 0.00 3.35
161 162 2.115911 CACTAGCCTCGTCGCCTCT 61.116 63.158 0.00 0.00 0.00 3.69
162 163 2.054140 CTCACTAGCCTCGTCGCCTC 62.054 65.000 0.00 0.00 0.00 4.70
163 164 2.045242 TCACTAGCCTCGTCGCCT 60.045 61.111 0.00 0.00 0.00 5.52
164 165 2.409651 CTCACTAGCCTCGTCGCC 59.590 66.667 0.00 0.00 0.00 5.54
165 166 2.409651 CCTCACTAGCCTCGTCGC 59.590 66.667 0.00 0.00 0.00 5.19
166 167 2.482333 CCCCTCACTAGCCTCGTCG 61.482 68.421 0.00 0.00 0.00 5.12
167 168 2.128507 CCCCCTCACTAGCCTCGTC 61.129 68.421 0.00 0.00 0.00 4.20
168 169 2.042843 CCCCCTCACTAGCCTCGT 60.043 66.667 0.00 0.00 0.00 4.18
169 170 3.541713 GCCCCCTCACTAGCCTCG 61.542 72.222 0.00 0.00 0.00 4.63
170 171 3.541713 CGCCCCCTCACTAGCCTC 61.542 72.222 0.00 0.00 0.00 4.70
171 172 4.075793 TCGCCCCCTCACTAGCCT 62.076 66.667 0.00 0.00 0.00 4.58
172 173 3.541713 CTCGCCCCCTCACTAGCC 61.542 72.222 0.00 0.00 0.00 3.93
173 174 2.442272 TCTCGCCCCCTCACTAGC 60.442 66.667 0.00 0.00 0.00 3.42
174 175 2.482333 CGTCTCGCCCCCTCACTAG 61.482 68.421 0.00 0.00 0.00 2.57
175 176 2.439701 CGTCTCGCCCCCTCACTA 60.440 66.667 0.00 0.00 0.00 2.74
176 177 4.361971 TCGTCTCGCCCCCTCACT 62.362 66.667 0.00 0.00 0.00 3.41
177 178 3.827898 CTCGTCTCGCCCCCTCAC 61.828 72.222 0.00 0.00 0.00 3.51
178 179 4.361971 ACTCGTCTCGCCCCCTCA 62.362 66.667 0.00 0.00 0.00 3.86
179 180 3.827898 CACTCGTCTCGCCCCCTC 61.828 72.222 0.00 0.00 0.00 4.30
184 185 4.803426 CTGCCCACTCGTCTCGCC 62.803 72.222 0.00 0.00 0.00 5.54
187 188 2.564553 ATTCGCTGCCCACTCGTCTC 62.565 60.000 0.00 0.00 0.00 3.36
188 189 2.650116 ATTCGCTGCCCACTCGTCT 61.650 57.895 0.00 0.00 0.00 4.18
189 190 2.125512 ATTCGCTGCCCACTCGTC 60.126 61.111 0.00 0.00 0.00 4.20
190 191 2.434884 CATTCGCTGCCCACTCGT 60.435 61.111 0.00 0.00 0.00 4.18
191 192 3.197790 CCATTCGCTGCCCACTCG 61.198 66.667 0.00 0.00 0.00 4.18
192 193 1.817099 CTCCATTCGCTGCCCACTC 60.817 63.158 0.00 0.00 0.00 3.51
193 194 1.264749 TACTCCATTCGCTGCCCACT 61.265 55.000 0.00 0.00 0.00 4.00
194 195 0.179045 ATACTCCATTCGCTGCCCAC 60.179 55.000 0.00 0.00 0.00 4.61
195 196 0.179048 CATACTCCATTCGCTGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
196 197 0.886490 CCATACTCCATTCGCTGCCC 60.886 60.000 0.00 0.00 0.00 5.36
197 198 0.106708 TCCATACTCCATTCGCTGCC 59.893 55.000 0.00 0.00 0.00 4.85
198 199 1.506493 CTCCATACTCCATTCGCTGC 58.494 55.000 0.00 0.00 0.00 5.25
199 200 1.270518 CCCTCCATACTCCATTCGCTG 60.271 57.143 0.00 0.00 0.00 5.18
200 201 1.051812 CCCTCCATACTCCATTCGCT 58.948 55.000 0.00 0.00 0.00 4.93
201 202 1.001406 CTCCCTCCATACTCCATTCGC 59.999 57.143 0.00 0.00 0.00 4.70
202 203 1.001406 GCTCCCTCCATACTCCATTCG 59.999 57.143 0.00 0.00 0.00 3.34
203 204 1.001406 CGCTCCCTCCATACTCCATTC 59.999 57.143 0.00 0.00 0.00 2.67
204 205 1.051812 CGCTCCCTCCATACTCCATT 58.948 55.000 0.00 0.00 0.00 3.16
205 206 0.105453 ACGCTCCCTCCATACTCCAT 60.105 55.000 0.00 0.00 0.00 3.41
206 207 0.755698 GACGCTCCCTCCATACTCCA 60.756 60.000 0.00 0.00 0.00 3.86
207 208 0.468400 AGACGCTCCCTCCATACTCC 60.468 60.000 0.00 0.00 0.00 3.85
208 209 1.338655 GAAGACGCTCCCTCCATACTC 59.661 57.143 0.00 0.00 0.00 2.59
209 210 1.063567 AGAAGACGCTCCCTCCATACT 60.064 52.381 0.00 0.00 0.00 2.12
210 211 1.404843 AGAAGACGCTCCCTCCATAC 58.595 55.000 0.00 0.00 0.00 2.39
211 212 2.160721 AAGAAGACGCTCCCTCCATA 57.839 50.000 0.00 0.00 0.00 2.74
212 213 2.160721 TAAGAAGACGCTCCCTCCAT 57.839 50.000 0.00 0.00 0.00 3.41
213 214 2.160721 ATAAGAAGACGCTCCCTCCA 57.839 50.000 0.00 0.00 0.00 3.86
214 215 3.550436 CGTTATAAGAAGACGCTCCCTCC 60.550 52.174 0.00 0.00 0.00 4.30
215 216 3.314635 TCGTTATAAGAAGACGCTCCCTC 59.685 47.826 0.00 0.00 36.77 4.30
216 217 3.285484 TCGTTATAAGAAGACGCTCCCT 58.715 45.455 0.00 0.00 36.77 4.20
217 218 3.630101 CTCGTTATAAGAAGACGCTCCC 58.370 50.000 0.00 0.00 36.77 4.30
218 219 3.044286 GCTCGTTATAAGAAGACGCTCC 58.956 50.000 0.00 0.00 36.77 4.70
219 220 2.714985 CGCTCGTTATAAGAAGACGCTC 59.285 50.000 0.00 0.00 36.77 5.03
220 221 2.717530 CGCTCGTTATAAGAAGACGCT 58.282 47.619 0.00 0.00 36.77 5.07
221 222 1.187487 GCGCTCGTTATAAGAAGACGC 59.813 52.381 0.00 14.18 36.77 5.19
222 223 1.779724 GGCGCTCGTTATAAGAAGACG 59.220 52.381 7.64 0.00 38.09 4.18
223 224 1.779724 CGGCGCTCGTTATAAGAAGAC 59.220 52.381 7.64 0.00 0.00 3.01
224 225 1.268896 CCGGCGCTCGTTATAAGAAGA 60.269 52.381 7.64 0.00 37.11 2.87
225 226 1.129326 CCGGCGCTCGTTATAAGAAG 58.871 55.000 7.64 0.00 37.11 2.85
226 227 0.872881 GCCGGCGCTCGTTATAAGAA 60.873 55.000 12.58 0.00 37.11 2.52
227 228 1.299620 GCCGGCGCTCGTTATAAGA 60.300 57.895 12.58 0.00 37.11 2.10
228 229 1.299926 AGCCGGCGCTCGTTATAAG 60.300 57.895 23.20 0.00 43.95 1.73
229 230 1.590525 CAGCCGGCGCTCGTTATAA 60.591 57.895 23.20 0.00 43.95 0.98
230 231 1.446516 TACAGCCGGCGCTCGTTATA 61.447 55.000 23.20 2.88 43.95 0.98
231 232 2.777972 TACAGCCGGCGCTCGTTAT 61.778 57.895 23.20 0.00 43.95 1.89
232 233 3.442167 TACAGCCGGCGCTCGTTA 61.442 61.111 23.20 4.18 43.95 3.18
236 237 4.752879 TTGGTACAGCCGGCGCTC 62.753 66.667 23.20 12.85 43.95 5.03
238 239 3.358707 TTTTGGTACAGCCGGCGC 61.359 61.111 23.20 12.69 42.39 6.53
239 240 2.559330 GTTTTGGTACAGCCGGCG 59.441 61.111 23.20 18.60 42.39 6.46
240 241 1.862602 CTGGTTTTGGTACAGCCGGC 61.863 60.000 21.89 21.89 42.39 6.13
241 242 2.253513 CTGGTTTTGGTACAGCCGG 58.746 57.895 0.00 0.00 42.39 6.13
245 246 1.206578 CGCGCTGGTTTTGGTACAG 59.793 57.895 5.56 0.00 42.39 2.74
246 247 2.899044 GCGCGCTGGTTTTGGTACA 61.899 57.895 26.67 0.00 0.00 2.90
247 248 2.127003 GCGCGCTGGTTTTGGTAC 60.127 61.111 26.67 0.00 0.00 3.34
248 249 3.718097 CGCGCGCTGGTTTTGGTA 61.718 61.111 30.48 0.00 0.00 3.25
250 251 4.320928 TTCGCGCGCTGGTTTTGG 62.321 61.111 30.48 11.00 0.00 3.28
251 252 3.091022 GTTCGCGCGCTGGTTTTG 61.091 61.111 30.48 11.83 0.00 2.44
252 253 4.322385 GGTTCGCGCGCTGGTTTT 62.322 61.111 30.48 0.00 0.00 2.43
256 257 4.445545 GAAAGGTTCGCGCGCTGG 62.446 66.667 30.48 15.15 0.00 4.85
257 258 3.354499 GAGAAAGGTTCGCGCGCTG 62.354 63.158 30.48 22.06 34.02 5.18
258 259 3.112709 GAGAAAGGTTCGCGCGCT 61.113 61.111 30.48 14.87 34.02 5.92
259 260 4.485208 CGAGAAAGGTTCGCGCGC 62.485 66.667 27.95 23.91 45.20 6.86
264 265 4.485208 GCGCGCGAGAAAGGTTCG 62.485 66.667 37.18 2.94 40.85 3.95
265 266 3.112709 AGCGCGCGAGAAAGGTTC 61.113 61.111 37.18 12.54 0.00 3.62
266 267 3.414700 CAGCGCGCGAGAAAGGTT 61.415 61.111 37.18 0.57 0.00 3.50
269 270 3.549150 CTCCAGCGCGCGAGAAAG 61.549 66.667 37.18 20.36 0.00 2.62
280 281 2.158561 ATTGGTTTTGGCGCTCCAGC 62.159 55.000 7.64 0.00 44.53 4.85
281 282 1.173043 TATTGGTTTTGGCGCTCCAG 58.827 50.000 7.64 0.00 44.53 3.86
282 283 1.476085 CATATTGGTTTTGGCGCTCCA 59.524 47.619 7.64 6.05 41.55 3.86
283 284 1.802508 GCATATTGGTTTTGGCGCTCC 60.803 52.381 7.64 3.30 0.00 4.70
284 285 1.559831 GCATATTGGTTTTGGCGCTC 58.440 50.000 7.64 0.00 0.00 5.03
285 286 0.179140 CGCATATTGGTTTTGGCGCT 60.179 50.000 7.64 0.00 37.96 5.92
286 287 2.287059 CGCATATTGGTTTTGGCGC 58.713 52.632 0.00 0.00 37.96 6.53
287 288 1.470699 CGCGCATATTGGTTTTGGCG 61.471 55.000 8.75 0.00 46.47 5.69
288 289 1.145162 CCGCGCATATTGGTTTTGGC 61.145 55.000 8.75 0.00 0.00 4.52
289 290 0.172352 ACCGCGCATATTGGTTTTGG 59.828 50.000 8.75 0.00 29.87 3.28
290 291 1.135546 TGACCGCGCATATTGGTTTTG 60.136 47.619 8.75 0.00 35.75 2.44
291 292 1.169577 TGACCGCGCATATTGGTTTT 58.830 45.000 8.75 0.00 35.75 2.43
292 293 1.065401 CATGACCGCGCATATTGGTTT 59.935 47.619 8.75 0.00 35.75 3.27
293 294 0.662619 CATGACCGCGCATATTGGTT 59.337 50.000 8.75 0.00 35.75 3.67
294 295 0.179059 TCATGACCGCGCATATTGGT 60.179 50.000 8.75 5.78 39.12 3.67
295 296 0.943673 TTCATGACCGCGCATATTGG 59.056 50.000 8.75 1.66 0.00 3.16
296 297 2.753989 TTTCATGACCGCGCATATTG 57.246 45.000 8.75 0.00 0.00 1.90
297 298 2.030893 CCATTTCATGACCGCGCATATT 60.031 45.455 8.75 0.00 0.00 1.28
298 299 1.536766 CCATTTCATGACCGCGCATAT 59.463 47.619 8.75 0.00 0.00 1.78
299 300 0.943673 CCATTTCATGACCGCGCATA 59.056 50.000 8.75 0.00 0.00 3.14
300 301 1.727511 CCCATTTCATGACCGCGCAT 61.728 55.000 8.75 0.00 0.00 4.73
301 302 2.405805 CCCATTTCATGACCGCGCA 61.406 57.895 8.75 0.00 0.00 6.09
302 303 2.322999 GACCCATTTCATGACCGCGC 62.323 60.000 0.00 0.00 0.00 6.86
303 304 1.721487 GACCCATTTCATGACCGCG 59.279 57.895 0.00 0.00 0.00 6.46
304 305 1.714899 CCGACCCATTTCATGACCGC 61.715 60.000 0.00 0.00 0.00 5.68
305 306 1.714899 GCCGACCCATTTCATGACCG 61.715 60.000 0.00 0.00 0.00 4.79
306 307 1.714899 CGCCGACCCATTTCATGACC 61.715 60.000 0.00 0.00 0.00 4.02
307 308 1.024579 ACGCCGACCCATTTCATGAC 61.025 55.000 0.00 0.00 0.00 3.06
308 309 1.024046 CACGCCGACCCATTTCATGA 61.024 55.000 0.00 0.00 0.00 3.07
309 310 1.305219 ACACGCCGACCCATTTCATG 61.305 55.000 0.00 0.00 0.00 3.07
310 311 0.608035 AACACGCCGACCCATTTCAT 60.608 50.000 0.00 0.00 0.00 2.57
311 312 1.228003 AACACGCCGACCCATTTCA 60.228 52.632 0.00 0.00 0.00 2.69
312 313 1.209127 CAACACGCCGACCCATTTC 59.791 57.895 0.00 0.00 0.00 2.17
313 314 2.265182 CCAACACGCCGACCCATTT 61.265 57.895 0.00 0.00 0.00 2.32
314 315 2.671619 CCAACACGCCGACCCATT 60.672 61.111 0.00 0.00 0.00 3.16
315 316 4.715523 CCCAACACGCCGACCCAT 62.716 66.667 0.00 0.00 0.00 4.00
324 325 4.012895 GACAGTGCGCCCAACACG 62.013 66.667 4.18 0.00 42.94 4.49
325 326 4.012895 CGACAGTGCGCCCAACAC 62.013 66.667 4.18 0.00 38.35 3.32
326 327 3.529341 ATCGACAGTGCGCCCAACA 62.529 57.895 4.18 0.00 0.00 3.33
327 328 2.240612 GAATCGACAGTGCGCCCAAC 62.241 60.000 4.18 0.00 0.00 3.77
328 329 2.031919 AATCGACAGTGCGCCCAA 59.968 55.556 4.18 0.00 0.00 4.12
329 330 2.434185 GAATCGACAGTGCGCCCA 60.434 61.111 4.18 0.00 0.00 5.36
330 331 1.573829 TTTGAATCGACAGTGCGCCC 61.574 55.000 4.18 0.00 0.00 6.13
331 332 0.447801 ATTTGAATCGACAGTGCGCC 59.552 50.000 4.18 0.00 0.00 6.53
332 333 1.394917 AGATTTGAATCGACAGTGCGC 59.605 47.619 0.00 0.00 40.35 6.09
333 334 4.840401 TTAGATTTGAATCGACAGTGCG 57.160 40.909 0.00 0.00 40.35 5.34
334 335 6.775088 TCAATTAGATTTGAATCGACAGTGC 58.225 36.000 0.00 0.00 40.35 4.40
335 336 7.404985 CCTCAATTAGATTTGAATCGACAGTG 58.595 38.462 0.00 0.00 40.35 3.66
336 337 6.540189 CCCTCAATTAGATTTGAATCGACAGT 59.460 38.462 0.00 0.00 40.35 3.55
337 338 6.540189 ACCCTCAATTAGATTTGAATCGACAG 59.460 38.462 0.00 0.00 40.35 3.51
338 339 6.316140 CACCCTCAATTAGATTTGAATCGACA 59.684 38.462 0.00 0.00 40.35 4.35
339 340 6.538742 TCACCCTCAATTAGATTTGAATCGAC 59.461 38.462 0.00 0.00 40.35 4.20
340 341 6.649155 TCACCCTCAATTAGATTTGAATCGA 58.351 36.000 0.00 0.00 40.35 3.59
341 342 6.925610 TCACCCTCAATTAGATTTGAATCG 57.074 37.500 0.00 0.00 40.35 3.34
342 343 7.148239 ACGTTCACCCTCAATTAGATTTGAATC 60.148 37.037 0.00 0.00 35.31 2.52
343 344 6.659242 ACGTTCACCCTCAATTAGATTTGAAT 59.341 34.615 0.00 0.00 35.31 2.57
344 345 6.001460 ACGTTCACCCTCAATTAGATTTGAA 58.999 36.000 0.00 0.00 35.31 2.69
345 346 5.556915 ACGTTCACCCTCAATTAGATTTGA 58.443 37.500 0.00 0.00 34.55 2.69
346 347 5.445939 CGACGTTCACCCTCAATTAGATTTG 60.446 44.000 0.00 0.00 0.00 2.32
347 348 4.630069 CGACGTTCACCCTCAATTAGATTT 59.370 41.667 0.00 0.00 0.00 2.17
348 349 4.181578 CGACGTTCACCCTCAATTAGATT 58.818 43.478 0.00 0.00 0.00 2.40
349 350 3.430374 CCGACGTTCACCCTCAATTAGAT 60.430 47.826 0.00 0.00 0.00 1.98
350 351 2.094390 CCGACGTTCACCCTCAATTAGA 60.094 50.000 0.00 0.00 0.00 2.10
351 352 2.268298 CCGACGTTCACCCTCAATTAG 58.732 52.381 0.00 0.00 0.00 1.73
352 353 1.066716 CCCGACGTTCACCCTCAATTA 60.067 52.381 0.00 0.00 0.00 1.40
353 354 0.321298 CCCGACGTTCACCCTCAATT 60.321 55.000 0.00 0.00 0.00 2.32
354 355 1.295423 CCCGACGTTCACCCTCAAT 59.705 57.895 0.00 0.00 0.00 2.57
355 356 2.738480 CCCGACGTTCACCCTCAA 59.262 61.111 0.00 0.00 0.00 3.02
356 357 3.998672 GCCCGACGTTCACCCTCA 61.999 66.667 0.00 0.00 0.00 3.86
374 375 3.595758 CATTTGGATCGCCCGCCC 61.596 66.667 0.00 0.00 37.93 6.13
375 376 3.595758 CCATTTGGATCGCCCGCC 61.596 66.667 0.00 0.00 37.93 6.13
376 377 2.515991 TCCATTTGGATCGCCCGC 60.516 61.111 0.00 0.00 39.78 6.13
385 386 3.175929 GACGGCGTTTTTATCCATTTGG 58.824 45.455 16.19 0.00 0.00 3.28
386 387 3.175929 GGACGGCGTTTTTATCCATTTG 58.824 45.455 16.19 0.00 0.00 2.32
387 388 2.820787 TGGACGGCGTTTTTATCCATTT 59.179 40.909 16.19 0.00 0.00 2.32
388 389 2.438411 TGGACGGCGTTTTTATCCATT 58.562 42.857 16.19 0.00 0.00 3.16
389 390 2.116827 TGGACGGCGTTTTTATCCAT 57.883 45.000 16.19 0.00 0.00 3.41
390 391 2.116827 ATGGACGGCGTTTTTATCCA 57.883 45.000 16.19 16.48 0.00 3.41
391 392 3.497297 AAATGGACGGCGTTTTTATCC 57.503 42.857 16.19 10.40 0.00 2.59
392 393 4.095334 ACCTAAATGGACGGCGTTTTTATC 59.905 41.667 16.19 0.00 39.71 1.75
393 394 4.011698 ACCTAAATGGACGGCGTTTTTAT 58.988 39.130 16.19 3.64 39.71 1.40
394 395 3.410508 ACCTAAATGGACGGCGTTTTTA 58.589 40.909 16.19 16.76 39.71 1.52
395 396 2.227149 GACCTAAATGGACGGCGTTTTT 59.773 45.455 16.19 16.54 39.71 1.94
396 397 1.808343 GACCTAAATGGACGGCGTTTT 59.192 47.619 16.19 13.75 39.71 2.43
397 398 1.445871 GACCTAAATGGACGGCGTTT 58.554 50.000 16.19 7.00 39.71 3.60
398 399 3.148340 GACCTAAATGGACGGCGTT 57.852 52.632 16.19 0.00 39.71 4.84
399 400 4.926207 GACCTAAATGGACGGCGT 57.074 55.556 14.65 14.65 39.71 5.68
404 405 1.523032 CGGGCCGACCTAAATGGAC 60.523 63.158 24.41 0.00 39.71 4.02
405 406 1.555477 AACGGGCCGACCTAAATGGA 61.555 55.000 35.78 0.00 39.71 3.41
406 407 1.078001 AACGGGCCGACCTAAATGG 60.078 57.895 35.78 0.00 42.93 3.16
407 408 0.391927 TGAACGGGCCGACCTAAATG 60.392 55.000 35.78 0.00 36.97 2.32
408 409 0.325602 TTGAACGGGCCGACCTAAAT 59.674 50.000 35.78 4.66 36.97 1.40
409 410 0.108207 TTTGAACGGGCCGACCTAAA 59.892 50.000 35.78 22.62 36.97 1.85
410 411 0.325602 ATTTGAACGGGCCGACCTAA 59.674 50.000 35.78 23.92 36.97 2.69
411 412 0.325602 AATTTGAACGGGCCGACCTA 59.674 50.000 35.78 16.97 36.97 3.08
412 413 1.074248 AATTTGAACGGGCCGACCT 59.926 52.632 35.78 16.66 36.97 3.85
413 414 1.211709 CAATTTGAACGGGCCGACC 59.788 57.895 35.78 22.89 0.00 4.79
414 415 1.211709 CCAATTTGAACGGGCCGAC 59.788 57.895 35.78 24.87 0.00 4.79
415 416 1.228306 ACCAATTTGAACGGGCCGA 60.228 52.632 35.78 10.47 0.00 5.54
416 417 1.211709 GACCAATTTGAACGGGCCG 59.788 57.895 27.06 27.06 0.00 6.13
417 418 1.828979 TAGACCAATTTGAACGGGCC 58.171 50.000 0.00 0.00 0.00 5.80
418 419 3.078837 TCTTAGACCAATTTGAACGGGC 58.921 45.455 0.00 0.00 0.00 6.13
419 420 5.897377 ATTCTTAGACCAATTTGAACGGG 57.103 39.130 0.00 0.00 0.00 5.28
420 421 6.959311 CGTAATTCTTAGACCAATTTGAACGG 59.041 38.462 0.00 0.00 0.00 4.44
421 422 6.464834 GCGTAATTCTTAGACCAATTTGAACG 59.535 38.462 0.00 0.00 30.18 3.95
422 423 7.302524 TGCGTAATTCTTAGACCAATTTGAAC 58.697 34.615 0.00 0.00 0.00 3.18
423 424 7.441890 TGCGTAATTCTTAGACCAATTTGAA 57.558 32.000 0.00 0.00 0.00 2.69
424 425 7.624360 ATGCGTAATTCTTAGACCAATTTGA 57.376 32.000 0.00 0.00 0.00 2.69
425 426 9.221775 GTTATGCGTAATTCTTAGACCAATTTG 57.778 33.333 0.85 0.00 0.00 2.32
426 427 9.174166 AGTTATGCGTAATTCTTAGACCAATTT 57.826 29.630 0.85 0.00 0.00 1.82
427 428 8.612619 CAGTTATGCGTAATTCTTAGACCAATT 58.387 33.333 0.85 0.00 0.00 2.32
428 429 7.769044 ACAGTTATGCGTAATTCTTAGACCAAT 59.231 33.333 0.85 0.00 0.00 3.16
429 430 7.101054 ACAGTTATGCGTAATTCTTAGACCAA 58.899 34.615 0.85 0.00 0.00 3.67
430 431 6.636705 ACAGTTATGCGTAATTCTTAGACCA 58.363 36.000 0.85 0.00 0.00 4.02
431 432 6.074994 CGACAGTTATGCGTAATTCTTAGACC 60.075 42.308 0.85 0.00 0.00 3.85
432 433 6.074994 CCGACAGTTATGCGTAATTCTTAGAC 60.075 42.308 0.85 0.00 0.00 2.59
433 434 5.975344 CCGACAGTTATGCGTAATTCTTAGA 59.025 40.000 0.85 0.00 0.00 2.10
434 435 5.975344 TCCGACAGTTATGCGTAATTCTTAG 59.025 40.000 0.85 0.00 0.00 2.18
435 436 5.745294 GTCCGACAGTTATGCGTAATTCTTA 59.255 40.000 0.85 0.00 0.00 2.10
460 461 6.617879 GCTCAATAAGGTTCGGTAACAAATT 58.382 36.000 0.00 0.00 37.34 1.82
461 462 5.163794 CGCTCAATAAGGTTCGGTAACAAAT 60.164 40.000 0.00 0.00 37.34 2.32
464 465 3.255725 CGCTCAATAAGGTTCGGTAACA 58.744 45.455 0.00 0.00 37.34 2.41
465 466 2.030091 GCGCTCAATAAGGTTCGGTAAC 59.970 50.000 0.00 0.00 34.66 2.50
471 473 1.739067 ACCAGCGCTCAATAAGGTTC 58.261 50.000 7.13 0.00 0.00 3.62
478 480 2.095853 CGTGAAATAACCAGCGCTCAAT 59.904 45.455 7.13 0.00 0.00 2.57
481 483 1.076332 ACGTGAAATAACCAGCGCTC 58.924 50.000 7.13 0.00 0.00 5.03
486 488 4.437390 GCATCTCCAACGTGAAATAACCAG 60.437 45.833 0.00 0.00 0.00 4.00
496 498 1.308069 CCAAGGGCATCTCCAACGTG 61.308 60.000 0.00 0.00 36.21 4.49
502 504 0.533755 CATCGTCCAAGGGCATCTCC 60.534 60.000 0.00 0.00 0.00 3.71
510 512 2.770164 GGATATCCCATCGTCCAAGG 57.230 55.000 11.02 0.00 34.14 3.61
542 544 3.556513 GTTATGATCGCGTCTGGAGTAG 58.443 50.000 5.77 0.00 0.00 2.57
564 566 2.425668 ACAAAGTCAAACCAAACCTCCG 59.574 45.455 0.00 0.00 0.00 4.63
586 591 4.034279 GCTAGTAGTAACTCGTCCACAGAG 59.966 50.000 0.00 0.00 41.27 3.35
588 593 3.688185 TGCTAGTAGTAACTCGTCCACAG 59.312 47.826 0.00 0.00 37.15 3.66
719 747 1.227999 ACATGCCACGAACGGTCAAG 61.228 55.000 0.00 0.00 0.00 3.02
733 761 6.542852 ACTAATCAACACGAAATGTACATGC 58.457 36.000 9.63 4.04 42.31 4.06
738 766 6.237728 GCATCGACTAATCAACACGAAATGTA 60.238 38.462 0.00 0.00 42.31 2.29
746 775 4.260375 GGACATGCATCGACTAATCAACAC 60.260 45.833 0.00 0.00 0.00 3.32
747 776 3.871006 GGACATGCATCGACTAATCAACA 59.129 43.478 0.00 0.00 0.00 3.33
757 786 3.030168 AAGGGCGGACATGCATCGA 62.030 57.895 10.17 0.00 36.28 3.59
790 826 1.661112 CTTTGGATTCGTCTTCGCTCC 59.339 52.381 0.00 0.00 38.31 4.70
837 873 4.254709 ACCGCTCTGTGGCAGCAA 62.255 61.111 0.00 0.00 36.54 3.91
838 874 4.994471 CACCGCTCTGTGGCAGCA 62.994 66.667 0.00 0.00 36.54 4.41
843 892 3.414700 GTTCGCACCGCTCTGTGG 61.415 66.667 0.00 0.00 39.41 4.17
932 2384 2.092103 TCCTAGTGCCTTTGTGGTTTGT 60.092 45.455 0.00 0.00 38.35 2.83
933 2385 2.293399 GTCCTAGTGCCTTTGTGGTTTG 59.707 50.000 0.00 0.00 38.35 2.93
934 2386 2.092103 TGTCCTAGTGCCTTTGTGGTTT 60.092 45.455 0.00 0.00 38.35 3.27
935 2387 1.493022 TGTCCTAGTGCCTTTGTGGTT 59.507 47.619 0.00 0.00 38.35 3.67
936 2388 1.136828 TGTCCTAGTGCCTTTGTGGT 58.863 50.000 0.00 0.00 38.35 4.16
941 2401 2.305052 GGGTAGTTGTCCTAGTGCCTTT 59.695 50.000 0.00 0.00 0.00 3.11
951 2411 2.035449 GGCTTTGTTTGGGTAGTTGTCC 59.965 50.000 0.00 0.00 0.00 4.02
958 2418 1.686052 CTGCTTGGCTTTGTTTGGGTA 59.314 47.619 0.00 0.00 0.00 3.69
967 2427 0.952984 GCTCGACTCTGCTTGGCTTT 60.953 55.000 0.00 0.00 0.00 3.51
968 2428 1.375268 GCTCGACTCTGCTTGGCTT 60.375 57.895 0.00 0.00 0.00 4.35
970 2430 3.184683 CGCTCGACTCTGCTTGGC 61.185 66.667 0.00 0.00 0.00 4.52
971 2431 1.515952 CTCGCTCGACTCTGCTTGG 60.516 63.158 0.00 0.00 0.00 3.61
974 2434 4.172772 CGCTCGCTCGACTCTGCT 62.173 66.667 0.00 0.00 0.00 4.24
1957 3480 2.604046 TATTCGAGCTTCTCTTGGCC 57.396 50.000 0.00 0.00 0.00 5.36
1976 3499 1.000019 AGCTCATTGCAGGGCACAT 60.000 52.632 0.13 0.00 45.94 3.21
1991 3514 4.168883 AGTAAACCCAGTTTCCTAGAGCT 58.831 43.478 0.00 0.00 37.01 4.09
1992 3515 4.554960 AGTAAACCCAGTTTCCTAGAGC 57.445 45.455 0.00 0.00 37.01 4.09
1996 3525 5.133153 AGTCCAAAGTAAACCCAGTTTCCTA 59.867 40.000 0.00 0.00 37.01 2.94
2009 3538 5.997746 CCTGTTCATCAGAAGTCCAAAGTAA 59.002 40.000 0.00 0.00 46.27 2.24
2011 3540 4.392940 CCTGTTCATCAGAAGTCCAAAGT 58.607 43.478 0.00 0.00 46.27 2.66
2021 3550 0.984230 GGGACACCCTGTTCATCAGA 59.016 55.000 0.00 0.00 46.27 3.27
2022 3551 3.558674 GGGACACCCTGTTCATCAG 57.441 57.895 0.00 0.00 41.34 2.90
2032 3598 2.682494 TCGGCAGTAGGGACACCC 60.682 66.667 0.00 0.00 45.90 4.61
2036 3602 3.814005 TTTATTCTCGGCAGTAGGGAC 57.186 47.619 0.00 0.00 0.00 4.46
2037 3603 4.829872 TTTTTATTCTCGGCAGTAGGGA 57.170 40.909 0.00 0.00 0.00 4.20
2040 3606 9.704098 GTTCTTAATTTTTATTCTCGGCAGTAG 57.296 33.333 0.00 0.00 0.00 2.57
2067 3633 5.291128 ACAGATATATTATACGCCGCAAAGC 59.709 40.000 0.00 0.00 0.00 3.51
2068 3634 6.887376 ACAGATATATTATACGCCGCAAAG 57.113 37.500 0.00 0.00 0.00 2.77
2070 3636 7.436970 CCATTACAGATATATTATACGCCGCAA 59.563 37.037 0.00 0.00 0.00 4.85
2088 3663 5.464722 CAGCTGCTTGATAGTACCATTACAG 59.535 44.000 0.00 0.00 0.00 2.74
2095 3670 6.422400 GTCTTAATCAGCTGCTTGATAGTACC 59.578 42.308 12.98 0.00 36.81 3.34
2101 3676 4.450053 GAGGTCTTAATCAGCTGCTTGAT 58.550 43.478 12.98 4.09 39.42 2.57
2109 3684 5.292765 TGAATCATCGAGGTCTTAATCAGC 58.707 41.667 0.00 0.00 0.00 4.26
2121 3696 8.619546 TCATAGATACTAGCATGAATCATCGAG 58.380 37.037 0.00 0.00 0.00 4.04
2131 3706 8.893219 TTGAAACCTTCATAGATACTAGCATG 57.107 34.615 0.00 0.00 39.84 4.06
2162 3740 9.777297 GCCTATGGTCTATATACTAGTACCTAC 57.223 40.741 4.31 0.01 0.00 3.18
2164 3742 8.403292 TGCCTATGGTCTATATACTAGTACCT 57.597 38.462 4.31 0.00 0.00 3.08
2165 3743 9.643735 AATGCCTATGGTCTATATACTAGTACC 57.356 37.037 4.31 3.93 0.00 3.34
2168 3746 9.769677 TGAAATGCCTATGGTCTATATACTAGT 57.230 33.333 0.00 0.00 0.00 2.57
2207 4044 2.767505 TCTTTTTCTGCGAGGAGGAAC 58.232 47.619 0.00 0.00 0.00 3.62
2365 4203 2.303549 CTGGGATGTCTCCTCGCACC 62.304 65.000 0.00 0.00 41.74 5.01
2366 4204 1.142748 CTGGGATGTCTCCTCGCAC 59.857 63.158 0.00 0.00 41.74 5.34
2367 4205 2.060383 CCTGGGATGTCTCCTCGCA 61.060 63.158 0.00 0.00 41.74 5.10
2368 4206 1.617947 AACCTGGGATGTCTCCTCGC 61.618 60.000 0.00 0.00 41.74 5.03
2369 4207 0.461961 GAACCTGGGATGTCTCCTCG 59.538 60.000 0.00 0.00 41.74 4.63
2370 4208 1.872773 AGAACCTGGGATGTCTCCTC 58.127 55.000 0.00 0.00 41.74 3.71
2371 4209 2.192263 GAAGAACCTGGGATGTCTCCT 58.808 52.381 0.00 0.00 41.74 3.69
2372 4210 1.134670 CGAAGAACCTGGGATGTCTCC 60.135 57.143 0.00 0.00 41.26 3.71
2373 4211 1.740718 GCGAAGAACCTGGGATGTCTC 60.741 57.143 0.00 0.00 0.00 3.36
2374 4212 0.250513 GCGAAGAACCTGGGATGTCT 59.749 55.000 0.00 0.00 0.00 3.41
2375 4213 0.744771 GGCGAAGAACCTGGGATGTC 60.745 60.000 0.00 0.00 0.00 3.06
2376 4214 1.299976 GGCGAAGAACCTGGGATGT 59.700 57.895 0.00 0.00 0.00 3.06
2377 4215 1.815421 CGGCGAAGAACCTGGGATG 60.815 63.158 0.00 0.00 0.00 3.51
2378 4216 2.584608 CGGCGAAGAACCTGGGAT 59.415 61.111 0.00 0.00 0.00 3.85
2379 4217 3.702048 CCGGCGAAGAACCTGGGA 61.702 66.667 9.30 0.00 0.00 4.37
2380 4218 4.778143 CCCGGCGAAGAACCTGGG 62.778 72.222 9.30 0.00 35.61 4.45
2382 4220 3.976701 ATGCCCGGCGAAGAACCTG 62.977 63.158 9.30 0.00 0.00 4.00
2383 4221 2.764637 AAATGCCCGGCGAAGAACCT 62.765 55.000 9.30 0.00 0.00 3.50
2384 4222 2.340328 AAATGCCCGGCGAAGAACC 61.340 57.895 9.30 0.00 0.00 3.62
2385 4223 1.154035 CAAATGCCCGGCGAAGAAC 60.154 57.895 9.30 0.00 0.00 3.01
2386 4224 1.175983 AACAAATGCCCGGCGAAGAA 61.176 50.000 9.30 0.00 0.00 2.52
2387 4225 1.175983 AAACAAATGCCCGGCGAAGA 61.176 50.000 9.30 0.00 0.00 2.87
2388 4226 0.319469 AAAACAAATGCCCGGCGAAG 60.319 50.000 9.30 0.00 0.00 3.79
2389 4227 0.105039 AAAAACAAATGCCCGGCGAA 59.895 45.000 9.30 0.00 0.00 4.70
2390 4228 1.742768 AAAAACAAATGCCCGGCGA 59.257 47.368 9.30 0.00 0.00 5.54
2391 4229 4.352386 AAAAACAAATGCCCGGCG 57.648 50.000 4.58 0.00 0.00 6.46
2502 4341 6.010219 AGTCTAGCTAGATTCAATCCTCCTC 58.990 44.000 25.74 8.65 34.39 3.71
2684 4523 6.294731 GGATGTAGCAAAGTTGAGGTGAATTT 60.295 38.462 0.00 0.00 0.00 1.82
2780 4619 4.122046 GCTGCAGGAAATGAAAAACTTGT 58.878 39.130 17.12 0.00 0.00 3.16
2795 4634 1.678101 GGGCAAGTTTATAGCTGCAGG 59.322 52.381 17.12 0.00 0.00 4.85
2858 4697 3.089784 CGCGAGTTTTGATCGGGG 58.910 61.111 0.00 0.00 45.93 5.73
2962 4801 1.134670 GTACGCTCCTTGGCAGAGAAT 60.135 52.381 7.85 0.00 32.86 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.