Multiple sequence alignment - TraesCS1A01G329700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G329700 chr1A 100.000 2351 0 0 1 2351 518683907 518681557 0.000000e+00 4342.0
1 TraesCS1A01G329700 chr1A 84.991 533 41 24 629 1145 372524655 372525164 2.700000e-139 505.0
2 TraesCS1A01G329700 chr1A 81.851 281 34 8 1149 1428 372530478 372530742 1.090000e-53 220.0
3 TraesCS1A01G329700 chr1D 90.669 986 57 17 627 1600 422820455 422819493 0.000000e+00 1279.0
4 TraesCS1A01G329700 chr1D 90.290 999 45 17 627 1600 422737354 422736383 0.000000e+00 1260.0
5 TraesCS1A01G329700 chr1D 92.359 746 52 5 1603 2346 204025505 204026247 0.000000e+00 1057.0
6 TraesCS1A01G329700 chr1D 87.119 722 58 24 629 1340 298635258 298635954 0.000000e+00 785.0
7 TraesCS1A01G329700 chr1D 87.342 79 5 3 378 452 294207717 294207794 4.160000e-13 86.1
8 TraesCS1A01G329700 chr2A 94.290 753 40 3 1601 2351 678990593 678991344 0.000000e+00 1149.0
9 TraesCS1A01G329700 chr2A 92.819 752 52 2 1602 2351 195328497 195327746 0.000000e+00 1088.0
10 TraesCS1A01G329700 chr2B 93.891 753 44 2 1601 2351 1366328 1365576 0.000000e+00 1134.0
11 TraesCS1A01G329700 chr3D 93.501 754 43 6 1602 2351 12459659 12460410 0.000000e+00 1116.0
12 TraesCS1A01G329700 chr6D 93.236 754 49 2 1600 2351 160434797 160434044 0.000000e+00 1109.0
13 TraesCS1A01G329700 chr4D 93.333 750 47 3 1601 2348 121195356 121196104 0.000000e+00 1105.0
14 TraesCS1A01G329700 chr5D 92.563 753 50 4 1601 2351 459114187 459114935 0.000000e+00 1075.0
15 TraesCS1A01G329700 chr7A 91.557 758 61 3 1596 2351 161272559 161273315 0.000000e+00 1042.0
16 TraesCS1A01G329700 chr1B 89.383 810 43 15 822 1600 571501857 571501060 0.000000e+00 979.0
17 TraesCS1A01G329700 chr1B 85.529 463 37 20 629 1082 402066747 402067188 7.660000e-125 457.0
18 TraesCS1A01G329700 chr1B 89.494 257 25 2 1085 1340 402068113 402068368 8.100000e-85 324.0
19 TraesCS1A01G329700 chr1B 94.040 151 7 1 627 775 571502019 571501869 6.540000e-56 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G329700 chr1A 518681557 518683907 2350 True 4342.0 4342 100.0000 1 2351 1 chr1A.!!$R1 2350
1 TraesCS1A01G329700 chr1A 372524655 372525164 509 False 505.0 505 84.9910 629 1145 1 chr1A.!!$F1 516
2 TraesCS1A01G329700 chr1D 422819493 422820455 962 True 1279.0 1279 90.6690 627 1600 1 chr1D.!!$R2 973
3 TraesCS1A01G329700 chr1D 422736383 422737354 971 True 1260.0 1260 90.2900 627 1600 1 chr1D.!!$R1 973
4 TraesCS1A01G329700 chr1D 204025505 204026247 742 False 1057.0 1057 92.3590 1603 2346 1 chr1D.!!$F1 743
5 TraesCS1A01G329700 chr1D 298635258 298635954 696 False 785.0 785 87.1190 629 1340 1 chr1D.!!$F3 711
6 TraesCS1A01G329700 chr2A 678990593 678991344 751 False 1149.0 1149 94.2900 1601 2351 1 chr2A.!!$F1 750
7 TraesCS1A01G329700 chr2A 195327746 195328497 751 True 1088.0 1088 92.8190 1602 2351 1 chr2A.!!$R1 749
8 TraesCS1A01G329700 chr2B 1365576 1366328 752 True 1134.0 1134 93.8910 1601 2351 1 chr2B.!!$R1 750
9 TraesCS1A01G329700 chr3D 12459659 12460410 751 False 1116.0 1116 93.5010 1602 2351 1 chr3D.!!$F1 749
10 TraesCS1A01G329700 chr6D 160434044 160434797 753 True 1109.0 1109 93.2360 1600 2351 1 chr6D.!!$R1 751
11 TraesCS1A01G329700 chr4D 121195356 121196104 748 False 1105.0 1105 93.3330 1601 2348 1 chr4D.!!$F1 747
12 TraesCS1A01G329700 chr5D 459114187 459114935 748 False 1075.0 1075 92.5630 1601 2351 1 chr5D.!!$F1 750
13 TraesCS1A01G329700 chr7A 161272559 161273315 756 False 1042.0 1042 91.5570 1596 2351 1 chr7A.!!$F1 755
14 TraesCS1A01G329700 chr1B 571501060 571502019 959 True 603.5 979 91.7115 627 1600 2 chr1B.!!$R1 973
15 TraesCS1A01G329700 chr1B 402066747 402068368 1621 False 390.5 457 87.5115 629 1340 2 chr1B.!!$F1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 344 0.033504 CTGCGCGGTTGGGATATACT 59.966 55.0 8.83 0.0 0.0 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 2784 0.394938 TGTTAGGTTTGGCTGCGAGA 59.605 50.0 0.0 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.983030 AGGCGGCGCAACAAATGA 60.983 55.556 34.36 0.00 0.00 2.57
18 19 2.804931 GGCGGCGCAACAAATGAC 60.805 61.111 34.36 8.86 0.00 3.06
19 20 3.165318 GCGGCGCAACAAATGACG 61.165 61.111 29.21 0.25 0.00 4.35
20 21 2.251075 CGGCGCAACAAATGACGT 59.749 55.556 10.83 0.00 33.17 4.34
21 22 1.493750 CGGCGCAACAAATGACGTA 59.506 52.632 10.83 0.00 33.17 3.57
22 23 0.518355 CGGCGCAACAAATGACGTAG 60.518 55.000 10.83 0.00 33.17 3.51
23 24 0.793861 GGCGCAACAAATGACGTAGA 59.206 50.000 10.83 0.00 33.17 2.59
24 25 1.201921 GGCGCAACAAATGACGTAGAG 60.202 52.381 10.83 0.00 33.17 2.43
25 26 1.201921 GCGCAACAAATGACGTAGAGG 60.202 52.381 0.30 0.00 33.17 3.69
26 27 1.393539 CGCAACAAATGACGTAGAGGG 59.606 52.381 0.00 0.00 0.00 4.30
27 28 1.130561 GCAACAAATGACGTAGAGGGC 59.869 52.381 0.00 0.00 0.00 5.19
28 29 1.393539 CAACAAATGACGTAGAGGGCG 59.606 52.381 0.00 0.00 0.00 6.13
29 30 0.892755 ACAAATGACGTAGAGGGCGA 59.107 50.000 0.00 0.00 0.00 5.54
30 31 1.480954 ACAAATGACGTAGAGGGCGAT 59.519 47.619 0.00 0.00 0.00 4.58
31 32 2.128035 CAAATGACGTAGAGGGCGATC 58.872 52.381 0.00 0.00 0.00 3.69
32 33 0.311165 AATGACGTAGAGGGCGATCG 59.689 55.000 11.69 11.69 0.00 3.69
33 34 2.051166 GACGTAGAGGGCGATCGC 60.051 66.667 31.52 31.52 41.06 4.58
56 57 3.152703 CGGTTGGTTCGCTGTACG 58.847 61.111 0.00 0.00 45.62 3.67
67 68 2.787259 GCTGTACGAACGTCGAACA 58.213 52.632 13.06 2.42 43.74 3.18
68 69 1.122849 GCTGTACGAACGTCGAACAA 58.877 50.000 13.06 0.00 43.74 2.83
69 70 1.137073 GCTGTACGAACGTCGAACAAC 60.137 52.381 13.06 0.00 43.74 3.32
70 71 1.111667 TGTACGAACGTCGAACAACG 58.888 50.000 13.06 0.00 43.74 4.10
71 72 0.179324 GTACGAACGTCGAACAACGC 60.179 55.000 13.06 0.00 46.40 4.84
72 73 1.268113 TACGAACGTCGAACAACGCC 61.268 55.000 13.06 0.00 46.40 5.68
74 75 2.278726 AACGTCGAACAACGCCGA 60.279 55.556 0.00 0.00 46.15 5.54
75 76 2.194591 GAACGTCGAACAACGCCGAG 62.195 60.000 0.00 0.00 46.15 4.63
76 77 2.427905 CGTCGAACAACGCCGAGA 60.428 61.111 0.00 0.00 46.15 4.04
77 78 2.704193 CGTCGAACAACGCCGAGAC 61.704 63.158 0.00 0.00 46.15 3.36
78 79 2.049802 TCGAACAACGCCGAGACC 60.050 61.111 0.00 0.00 42.26 3.85
79 80 3.110178 CGAACAACGCCGAGACCC 61.110 66.667 0.00 0.00 34.51 4.46
80 81 2.029964 GAACAACGCCGAGACCCA 59.970 61.111 0.00 0.00 0.00 4.51
81 82 2.280592 AACAACGCCGAGACCCAC 60.281 61.111 0.00 0.00 0.00 4.61
82 83 2.981977 GAACAACGCCGAGACCCACA 62.982 60.000 0.00 0.00 0.00 4.17
83 84 2.738521 CAACGCCGAGACCCACAG 60.739 66.667 0.00 0.00 0.00 3.66
84 85 4.681978 AACGCCGAGACCCACAGC 62.682 66.667 0.00 0.00 0.00 4.40
87 88 4.008933 GCCGAGACCCACAGCAGT 62.009 66.667 0.00 0.00 0.00 4.40
88 89 2.047844 CCGAGACCCACAGCAGTG 60.048 66.667 1.56 1.56 45.47 3.66
96 97 4.863707 CACAGCAGTGGTGTCAGT 57.136 55.556 24.55 0.81 42.60 3.41
97 98 3.085208 CACAGCAGTGGTGTCAGTT 57.915 52.632 24.55 0.41 42.60 3.16
98 99 0.940126 CACAGCAGTGGTGTCAGTTC 59.060 55.000 24.55 0.00 42.60 3.01
99 100 0.833287 ACAGCAGTGGTGTCAGTTCT 59.167 50.000 21.94 0.00 40.38 3.01
100 101 1.224075 CAGCAGTGGTGTCAGTTCTG 58.776 55.000 14.25 0.00 32.87 3.02
101 102 0.833287 AGCAGTGGTGTCAGTTCTGT 59.167 50.000 0.00 0.00 0.00 3.41
102 103 1.202580 AGCAGTGGTGTCAGTTCTGTC 60.203 52.381 0.00 0.00 0.00 3.51
103 104 1.473257 GCAGTGGTGTCAGTTCTGTCA 60.473 52.381 0.00 0.00 0.00 3.58
104 105 2.477825 CAGTGGTGTCAGTTCTGTCAG 58.522 52.381 0.00 0.00 0.00 3.51
105 106 1.414181 AGTGGTGTCAGTTCTGTCAGG 59.586 52.381 0.00 0.00 0.00 3.86
106 107 1.139058 GTGGTGTCAGTTCTGTCAGGT 59.861 52.381 0.00 0.00 0.00 4.00
107 108 1.138859 TGGTGTCAGTTCTGTCAGGTG 59.861 52.381 0.00 0.00 0.00 4.00
108 109 1.541233 GGTGTCAGTTCTGTCAGGTGG 60.541 57.143 0.00 0.00 0.00 4.61
109 110 0.106708 TGTCAGTTCTGTCAGGTGGC 59.893 55.000 0.00 0.00 0.00 5.01
110 111 0.946221 GTCAGTTCTGTCAGGTGGCG 60.946 60.000 0.00 0.00 0.00 5.69
111 112 1.669115 CAGTTCTGTCAGGTGGCGG 60.669 63.158 0.00 0.00 0.00 6.13
112 113 2.358737 GTTCTGTCAGGTGGCGGG 60.359 66.667 0.00 0.00 0.00 6.13
113 114 4.329545 TTCTGTCAGGTGGCGGGC 62.330 66.667 0.00 0.00 0.00 6.13
139 140 3.254654 CGGCGCGACATTGACGAT 61.255 61.111 14.85 0.00 0.00 3.73
140 141 2.321060 GGCGCGACATTGACGATG 59.679 61.111 12.10 0.75 41.71 3.84
141 142 2.321060 GCGCGACATTGACGATGG 59.679 61.111 12.10 2.21 40.21 3.51
142 143 3.005898 CGCGACATTGACGATGGG 58.994 61.111 12.54 0.31 40.21 4.00
143 144 1.518352 CGCGACATTGACGATGGGA 60.518 57.895 12.54 0.00 40.21 4.37
144 145 1.482621 CGCGACATTGACGATGGGAG 61.483 60.000 12.54 0.00 40.21 4.30
145 146 1.154205 GCGACATTGACGATGGGAGG 61.154 60.000 12.54 0.00 40.21 4.30
146 147 0.530650 CGACATTGACGATGGGAGGG 60.531 60.000 7.60 0.00 40.21 4.30
147 148 0.830648 GACATTGACGATGGGAGGGA 59.169 55.000 7.60 0.00 40.21 4.20
148 149 0.541863 ACATTGACGATGGGAGGGAC 59.458 55.000 7.60 0.00 40.21 4.46
149 150 0.530650 CATTGACGATGGGAGGGACG 60.531 60.000 0.00 0.00 31.83 4.79
150 151 1.686325 ATTGACGATGGGAGGGACGG 61.686 60.000 0.00 0.00 0.00 4.79
151 152 2.441532 GACGATGGGAGGGACGGA 60.442 66.667 0.00 0.00 0.00 4.69
152 153 2.442272 ACGATGGGAGGGACGGAG 60.442 66.667 0.00 0.00 0.00 4.63
153 154 3.227276 CGATGGGAGGGACGGAGG 61.227 72.222 0.00 0.00 0.00 4.30
154 155 2.844839 GATGGGAGGGACGGAGGG 60.845 72.222 0.00 0.00 0.00 4.30
155 156 3.364964 ATGGGAGGGACGGAGGGA 61.365 66.667 0.00 0.00 0.00 4.20
156 157 3.396822 ATGGGAGGGACGGAGGGAG 62.397 68.421 0.00 0.00 0.00 4.30
157 158 4.862823 GGGAGGGACGGAGGGAGG 62.863 77.778 0.00 0.00 0.00 4.30
158 159 4.862823 GGAGGGACGGAGGGAGGG 62.863 77.778 0.00 0.00 0.00 4.30
167 168 3.787001 GAGGGAGGGCGGGAACTG 61.787 72.222 0.00 0.00 38.10 3.16
170 171 3.787001 GGAGGGCGGGAACTGGAG 61.787 72.222 0.00 0.00 33.56 3.86
171 172 3.787001 GAGGGCGGGAACTGGAGG 61.787 72.222 0.00 0.00 33.56 4.30
172 173 4.658786 AGGGCGGGAACTGGAGGT 62.659 66.667 0.00 0.00 33.56 3.85
173 174 4.410400 GGGCGGGAACTGGAGGTG 62.410 72.222 0.00 0.00 33.56 4.00
175 176 4.021925 GCGGGAACTGGAGGTGCT 62.022 66.667 0.00 0.00 33.56 4.40
176 177 2.046892 CGGGAACTGGAGGTGCTG 60.047 66.667 0.00 0.00 0.00 4.41
177 178 2.352805 GGGAACTGGAGGTGCTGG 59.647 66.667 0.00 0.00 0.00 4.85
178 179 2.224159 GGGAACTGGAGGTGCTGGA 61.224 63.158 0.00 0.00 0.00 3.86
179 180 1.761174 GGAACTGGAGGTGCTGGAA 59.239 57.895 0.00 0.00 0.00 3.53
180 181 0.110486 GGAACTGGAGGTGCTGGAAA 59.890 55.000 0.00 0.00 0.00 3.13
181 182 1.528129 GAACTGGAGGTGCTGGAAAG 58.472 55.000 0.00 0.00 0.00 2.62
182 183 1.072331 GAACTGGAGGTGCTGGAAAGA 59.928 52.381 0.00 0.00 0.00 2.52
183 184 0.689623 ACTGGAGGTGCTGGAAAGAG 59.310 55.000 0.00 0.00 0.00 2.85
184 185 0.035630 CTGGAGGTGCTGGAAAGAGG 60.036 60.000 0.00 0.00 0.00 3.69
185 186 1.301293 GGAGGTGCTGGAAAGAGGG 59.699 63.158 0.00 0.00 0.00 4.30
186 187 1.301293 GAGGTGCTGGAAAGAGGGG 59.699 63.158 0.00 0.00 0.00 4.79
187 188 2.203549 GAGGTGCTGGAAAGAGGGGG 62.204 65.000 0.00 0.00 0.00 5.40
188 189 2.231380 GGTGCTGGAAAGAGGGGGA 61.231 63.158 0.00 0.00 0.00 4.81
189 190 1.301293 GTGCTGGAAAGAGGGGGAG 59.699 63.158 0.00 0.00 0.00 4.30
190 191 1.925455 TGCTGGAAAGAGGGGGAGG 60.925 63.158 0.00 0.00 0.00 4.30
191 192 2.684499 GCTGGAAAGAGGGGGAGGG 61.684 68.421 0.00 0.00 0.00 4.30
192 193 2.003548 CTGGAAAGAGGGGGAGGGG 61.004 68.421 0.00 0.00 0.00 4.79
193 194 2.696504 GGAAAGAGGGGGAGGGGG 60.697 72.222 0.00 0.00 0.00 5.40
194 195 2.459710 GAAAGAGGGGGAGGGGGA 59.540 66.667 0.00 0.00 0.00 4.81
195 196 1.230182 GAAAGAGGGGGAGGGGGAA 60.230 63.158 0.00 0.00 0.00 3.97
196 197 1.230314 AAAGAGGGGGAGGGGGAAG 60.230 63.158 0.00 0.00 0.00 3.46
197 198 1.772561 AAAGAGGGGGAGGGGGAAGA 61.773 60.000 0.00 0.00 0.00 2.87
198 199 1.550480 AAGAGGGGGAGGGGGAAGAT 61.550 60.000 0.00 0.00 0.00 2.40
199 200 1.462432 GAGGGGGAGGGGGAAGATC 60.462 68.421 0.00 0.00 0.00 2.75
200 201 2.271493 GAGGGGGAGGGGGAAGATCA 62.271 65.000 0.00 0.00 0.00 2.92
201 202 2.079288 GGGGGAGGGGGAAGATCAC 61.079 68.421 0.00 0.00 0.00 3.06
202 203 2.444256 GGGGAGGGGGAAGATCACG 61.444 68.421 0.00 0.00 0.00 4.35
203 204 1.689582 GGGAGGGGGAAGATCACGT 60.690 63.158 0.00 0.00 0.00 4.49
204 205 1.687297 GGGAGGGGGAAGATCACGTC 61.687 65.000 0.00 0.00 0.00 4.34
205 206 0.976073 GGAGGGGGAAGATCACGTCA 60.976 60.000 0.00 0.00 0.00 4.35
206 207 0.461961 GAGGGGGAAGATCACGTCAG 59.538 60.000 0.00 0.00 0.00 3.51
207 208 1.153349 GGGGGAAGATCACGTCAGC 60.153 63.158 0.00 0.00 0.00 4.26
208 209 1.596934 GGGGAAGATCACGTCAGCA 59.403 57.895 0.00 0.00 0.00 4.41
209 210 0.460987 GGGGAAGATCACGTCAGCAG 60.461 60.000 0.00 0.00 0.00 4.24
210 211 0.247736 GGGAAGATCACGTCAGCAGT 59.752 55.000 0.00 0.00 0.00 4.40
211 212 1.476891 GGGAAGATCACGTCAGCAGTA 59.523 52.381 0.00 0.00 0.00 2.74
212 213 2.480416 GGGAAGATCACGTCAGCAGTAG 60.480 54.545 0.00 0.00 0.00 2.57
213 214 2.189342 GAAGATCACGTCAGCAGTAGC 58.811 52.381 0.00 0.00 42.56 3.58
223 224 4.577246 GCAGTAGCGCTCGGAGGG 62.577 72.222 16.34 16.93 0.00 4.30
224 225 2.829003 CAGTAGCGCTCGGAGGGA 60.829 66.667 24.34 2.87 0.00 4.20
225 226 2.196229 AGTAGCGCTCGGAGGGAT 59.804 61.111 24.34 20.69 0.00 3.85
226 227 2.196925 AGTAGCGCTCGGAGGGATG 61.197 63.158 24.34 0.00 0.00 3.51
227 228 3.606662 TAGCGCTCGGAGGGATGC 61.607 66.667 24.34 7.99 0.00 3.91
275 276 2.282462 CAGGGCTGCGGAGGTTTT 60.282 61.111 5.93 0.00 0.00 2.43
276 277 2.034221 AGGGCTGCGGAGGTTTTC 59.966 61.111 5.93 0.00 0.00 2.29
277 278 3.431725 GGGCTGCGGAGGTTTTCG 61.432 66.667 5.93 0.00 0.00 3.46
278 279 2.668550 GGCTGCGGAGGTTTTCGT 60.669 61.111 5.93 0.00 0.00 3.85
279 280 1.375013 GGCTGCGGAGGTTTTCGTA 60.375 57.895 5.93 0.00 0.00 3.43
280 281 1.359459 GGCTGCGGAGGTTTTCGTAG 61.359 60.000 5.93 0.00 40.95 3.51
281 282 0.389426 GCTGCGGAGGTTTTCGTAGA 60.389 55.000 5.93 0.00 40.57 2.59
282 283 1.739371 GCTGCGGAGGTTTTCGTAGAT 60.739 52.381 5.93 0.00 40.57 1.98
283 284 2.194271 CTGCGGAGGTTTTCGTAGATC 58.806 52.381 0.00 0.00 40.57 2.75
284 285 1.197910 GCGGAGGTTTTCGTAGATCG 58.802 55.000 0.00 0.00 41.41 3.69
285 286 1.468736 GCGGAGGTTTTCGTAGATCGT 60.469 52.381 0.00 0.00 40.80 3.73
286 287 2.182825 CGGAGGTTTTCGTAGATCGTG 58.817 52.381 0.00 0.00 40.80 4.35
287 288 2.537401 GGAGGTTTTCGTAGATCGTGG 58.463 52.381 0.00 0.00 40.80 4.94
288 289 1.925185 GAGGTTTTCGTAGATCGTGGC 59.075 52.381 0.00 0.00 40.80 5.01
289 290 1.004595 GGTTTTCGTAGATCGTGGCC 58.995 55.000 0.00 0.00 40.80 5.36
290 291 1.004595 GTTTTCGTAGATCGTGGCCC 58.995 55.000 0.00 0.00 40.80 5.80
291 292 0.458889 TTTTCGTAGATCGTGGCCCG 60.459 55.000 0.00 3.30 40.80 6.13
292 293 1.597797 TTTCGTAGATCGTGGCCCGT 61.598 55.000 12.46 1.94 40.80 5.28
293 294 2.274232 TTCGTAGATCGTGGCCCGTG 62.274 60.000 12.46 0.00 40.80 4.94
294 295 2.106332 GTAGATCGTGGCCCGTGG 59.894 66.667 12.46 0.00 37.94 4.94
295 296 3.151710 TAGATCGTGGCCCGTGGG 61.152 66.667 12.46 0.00 37.94 4.61
306 307 4.540735 CCGTGGGGGCGTGGATAC 62.541 72.222 0.00 0.00 0.00 2.24
316 317 3.436001 CGTGGATACGGAGCTGTTT 57.564 52.632 0.00 0.00 46.23 2.83
317 318 1.722011 CGTGGATACGGAGCTGTTTT 58.278 50.000 0.00 0.00 46.23 2.43
318 319 2.073816 CGTGGATACGGAGCTGTTTTT 58.926 47.619 0.00 0.00 46.23 1.94
335 336 2.725008 TTTTTCCTGCGCGGTTGG 59.275 55.556 16.49 8.81 0.00 3.77
336 337 2.851071 TTTTTCCTGCGCGGTTGGG 61.851 57.895 16.49 6.17 0.00 4.12
337 338 3.776347 TTTTCCTGCGCGGTTGGGA 62.776 57.895 16.49 8.52 0.00 4.37
338 339 3.561120 TTTCCTGCGCGGTTGGGAT 62.561 57.895 16.49 0.00 0.00 3.85
339 340 2.186602 TTTCCTGCGCGGTTGGGATA 62.187 55.000 16.49 4.12 0.00 2.59
340 341 1.978455 TTCCTGCGCGGTTGGGATAT 61.978 55.000 16.49 0.00 0.00 1.63
341 342 1.116536 TCCTGCGCGGTTGGGATATA 61.117 55.000 16.49 0.00 0.00 0.86
342 343 0.949105 CCTGCGCGGTTGGGATATAC 60.949 60.000 16.49 0.00 0.00 1.47
343 344 0.033504 CTGCGCGGTTGGGATATACT 59.966 55.000 8.83 0.00 0.00 2.12
344 345 1.271379 CTGCGCGGTTGGGATATACTA 59.729 52.381 8.83 0.00 0.00 1.82
345 346 1.000060 TGCGCGGTTGGGATATACTAC 60.000 52.381 8.83 0.00 0.00 2.73
346 347 1.973138 CGCGGTTGGGATATACTACG 58.027 55.000 0.00 0.00 0.00 3.51
347 348 1.536766 CGCGGTTGGGATATACTACGA 59.463 52.381 0.00 0.00 0.00 3.43
348 349 2.666619 CGCGGTTGGGATATACTACGAC 60.667 54.545 0.00 0.00 0.00 4.34
349 350 2.555757 GCGGTTGGGATATACTACGACT 59.444 50.000 0.00 0.00 0.00 4.18
350 351 3.611057 GCGGTTGGGATATACTACGACTG 60.611 52.174 0.00 0.00 0.00 3.51
351 352 3.817084 CGGTTGGGATATACTACGACTGA 59.183 47.826 0.00 0.00 0.00 3.41
352 353 4.458295 CGGTTGGGATATACTACGACTGAT 59.542 45.833 0.00 0.00 0.00 2.90
353 354 5.048224 CGGTTGGGATATACTACGACTGATT 60.048 44.000 0.00 0.00 0.00 2.57
354 355 6.516194 CGGTTGGGATATACTACGACTGATTT 60.516 42.308 0.00 0.00 0.00 2.17
355 356 6.645415 GGTTGGGATATACTACGACTGATTTG 59.355 42.308 0.00 0.00 0.00 2.32
356 357 6.971726 TGGGATATACTACGACTGATTTGT 57.028 37.500 0.00 0.00 0.00 2.83
357 358 8.355169 GTTGGGATATACTACGACTGATTTGTA 58.645 37.037 0.00 0.00 0.00 2.41
358 359 8.645814 TGGGATATACTACGACTGATTTGTAT 57.354 34.615 0.00 0.00 0.00 2.29
359 360 8.737175 TGGGATATACTACGACTGATTTGTATC 58.263 37.037 0.00 0.00 0.00 2.24
360 361 8.958506 GGGATATACTACGACTGATTTGTATCT 58.041 37.037 0.00 0.00 0.00 1.98
364 365 6.674694 ACTACGACTGATTTGTATCTACGT 57.325 37.500 0.00 0.00 37.77 3.57
365 366 6.484540 ACTACGACTGATTTGTATCTACGTG 58.515 40.000 0.00 0.00 36.63 4.49
366 367 4.669318 ACGACTGATTTGTATCTACGTGG 58.331 43.478 0.00 0.00 35.30 4.94
367 368 4.042398 CGACTGATTTGTATCTACGTGGG 58.958 47.826 0.00 0.00 0.00 4.61
368 369 4.439700 CGACTGATTTGTATCTACGTGGGT 60.440 45.833 0.00 0.00 0.00 4.51
369 370 5.416271 ACTGATTTGTATCTACGTGGGTT 57.584 39.130 0.00 0.00 0.00 4.11
370 371 5.175859 ACTGATTTGTATCTACGTGGGTTG 58.824 41.667 0.00 0.00 0.00 3.77
371 372 5.155278 TGATTTGTATCTACGTGGGTTGT 57.845 39.130 0.00 0.00 0.00 3.32
372 373 6.071221 ACTGATTTGTATCTACGTGGGTTGTA 60.071 38.462 0.00 0.00 0.00 2.41
373 374 6.101332 TGATTTGTATCTACGTGGGTTGTAC 58.899 40.000 0.00 0.00 0.00 2.90
374 375 3.763097 TGTATCTACGTGGGTTGTACG 57.237 47.619 0.00 0.00 46.31 3.67
375 376 3.342719 TGTATCTACGTGGGTTGTACGA 58.657 45.455 0.00 0.00 43.82 3.43
376 377 3.755905 TGTATCTACGTGGGTTGTACGAA 59.244 43.478 0.00 0.00 43.82 3.85
377 378 2.995466 TCTACGTGGGTTGTACGAAG 57.005 50.000 0.00 0.00 43.82 3.79
379 380 2.226437 TCTACGTGGGTTGTACGAAGTC 59.774 50.000 0.00 0.00 43.93 3.01
380 381 0.318107 ACGTGGGTTGTACGAAGTCG 60.318 55.000 4.43 0.00 43.93 4.18
391 392 3.715854 CGAAGTCGTAAGGGAGGTG 57.284 57.895 0.00 0.00 38.47 4.00
392 393 0.172803 CGAAGTCGTAAGGGAGGTGG 59.827 60.000 0.00 0.00 38.47 4.61
393 394 0.535797 GAAGTCGTAAGGGAGGTGGG 59.464 60.000 0.00 0.00 38.47 4.61
394 395 0.908180 AAGTCGTAAGGGAGGTGGGG 60.908 60.000 0.00 0.00 38.47 4.96
395 396 1.305549 GTCGTAAGGGAGGTGGGGA 60.306 63.158 0.00 0.00 38.47 4.81
396 397 0.690077 GTCGTAAGGGAGGTGGGGAT 60.690 60.000 0.00 0.00 38.47 3.85
397 398 0.398098 TCGTAAGGGAGGTGGGGATC 60.398 60.000 0.00 0.00 38.47 3.36
398 399 1.745320 CGTAAGGGAGGTGGGGATCG 61.745 65.000 0.00 0.00 0.00 3.69
399 400 0.398098 GTAAGGGAGGTGGGGATCGA 60.398 60.000 0.00 0.00 0.00 3.59
400 401 0.340558 TAAGGGAGGTGGGGATCGAA 59.659 55.000 0.00 0.00 0.00 3.71
401 402 1.272554 AAGGGAGGTGGGGATCGAAC 61.273 60.000 0.00 0.00 0.00 3.95
402 403 2.499685 GGAGGTGGGGATCGAACG 59.500 66.667 0.00 0.00 0.00 3.95
403 404 2.056223 GGAGGTGGGGATCGAACGA 61.056 63.158 0.00 0.00 0.00 3.85
404 405 1.437986 GAGGTGGGGATCGAACGAG 59.562 63.158 2.94 0.00 0.00 4.18
405 406 2.017559 GAGGTGGGGATCGAACGAGG 62.018 65.000 2.94 0.00 0.00 4.63
406 407 2.056223 GGTGGGGATCGAACGAGGA 61.056 63.158 2.94 0.00 0.00 3.71
407 408 1.141234 GTGGGGATCGAACGAGGAC 59.859 63.158 2.94 0.00 0.00 3.85
408 409 2.412112 GGGGATCGAACGAGGACG 59.588 66.667 2.94 0.00 45.75 4.79
409 410 2.117156 GGGGATCGAACGAGGACGA 61.117 63.158 2.94 0.00 42.66 4.20
410 411 1.660560 GGGGATCGAACGAGGACGAA 61.661 60.000 2.94 0.00 41.65 3.85
411 412 0.525029 GGGATCGAACGAGGACGAAC 60.525 60.000 2.94 0.00 41.65 3.95
412 413 0.525029 GGATCGAACGAGGACGAACC 60.525 60.000 2.94 0.00 42.17 3.62
413 414 0.169672 GATCGAACGAGGACGAACCA 59.830 55.000 2.94 0.00 41.65 3.67
414 415 0.815734 ATCGAACGAGGACGAACCAT 59.184 50.000 2.94 0.00 41.65 3.55
415 416 0.169672 TCGAACGAGGACGAACCATC 59.830 55.000 0.00 0.00 42.66 3.51
416 417 0.109458 CGAACGAGGACGAACCATCA 60.109 55.000 0.00 0.00 42.66 3.07
417 418 1.347320 GAACGAGGACGAACCATCAC 58.653 55.000 0.00 0.00 42.66 3.06
418 419 0.388134 AACGAGGACGAACCATCACG 60.388 55.000 0.00 0.00 42.66 4.35
419 420 1.239296 ACGAGGACGAACCATCACGA 61.239 55.000 0.00 0.00 42.66 4.35
420 421 0.797249 CGAGGACGAACCATCACGAC 60.797 60.000 0.00 0.00 42.66 4.34
421 422 0.797249 GAGGACGAACCATCACGACG 60.797 60.000 0.00 0.00 42.04 5.12
422 423 1.080974 GGACGAACCATCACGACGT 60.081 57.895 0.00 0.00 39.82 4.34
423 424 0.168788 GGACGAACCATCACGACGTA 59.831 55.000 0.00 0.00 37.32 3.57
424 425 1.253999 GACGAACCATCACGACGTAC 58.746 55.000 0.00 0.00 37.32 3.67
426 427 0.179217 CGAACCATCACGACGTACGA 60.179 55.000 24.41 0.00 45.77 3.43
427 428 1.530441 CGAACCATCACGACGTACGAT 60.530 52.381 24.41 6.13 45.77 3.73
428 429 2.107178 GAACCATCACGACGTACGATC 58.893 52.381 24.41 14.33 45.77 3.69
429 430 0.379669 ACCATCACGACGTACGATCC 59.620 55.000 24.41 9.48 45.77 3.36
430 431 0.317603 CCATCACGACGTACGATCCC 60.318 60.000 24.41 6.94 45.77 3.85
431 432 0.317603 CATCACGACGTACGATCCCC 60.318 60.000 24.41 4.45 45.77 4.81
432 433 1.450531 ATCACGACGTACGATCCCCC 61.451 60.000 24.41 2.69 45.77 5.40
433 434 2.117156 CACGACGTACGATCCCCCT 61.117 63.158 24.41 0.00 45.77 4.79
434 435 1.379044 ACGACGTACGATCCCCCTT 60.379 57.895 24.41 0.00 45.77 3.95
435 436 0.967380 ACGACGTACGATCCCCCTTT 60.967 55.000 24.41 0.00 45.77 3.11
436 437 1.024271 CGACGTACGATCCCCCTTTA 58.976 55.000 24.41 0.00 45.77 1.85
437 438 1.405105 CGACGTACGATCCCCCTTTAA 59.595 52.381 24.41 0.00 45.77 1.52
438 439 2.035066 CGACGTACGATCCCCCTTTAAT 59.965 50.000 24.41 0.00 45.77 1.40
439 440 3.253188 CGACGTACGATCCCCCTTTAATA 59.747 47.826 24.41 0.00 45.77 0.98
440 441 4.614535 CGACGTACGATCCCCCTTTAATAG 60.615 50.000 24.41 0.00 45.77 1.73
441 442 4.218312 ACGTACGATCCCCCTTTAATAGT 58.782 43.478 24.41 0.00 0.00 2.12
442 443 5.385198 ACGTACGATCCCCCTTTAATAGTA 58.615 41.667 24.41 0.00 0.00 1.82
443 444 5.474876 ACGTACGATCCCCCTTTAATAGTAG 59.525 44.000 24.41 0.00 0.00 2.57
444 445 5.707298 CGTACGATCCCCCTTTAATAGTAGA 59.293 44.000 10.44 0.00 0.00 2.59
445 446 6.128063 CGTACGATCCCCCTTTAATAGTAGAG 60.128 46.154 10.44 0.00 0.00 2.43
446 447 5.961897 ACGATCCCCCTTTAATAGTAGAGA 58.038 41.667 0.00 0.00 0.00 3.10
447 448 6.563163 ACGATCCCCCTTTAATAGTAGAGAT 58.437 40.000 0.00 0.00 0.00 2.75
448 449 7.017531 ACGATCCCCCTTTAATAGTAGAGATT 58.982 38.462 0.00 0.00 0.00 2.40
449 450 7.178805 ACGATCCCCCTTTAATAGTAGAGATTC 59.821 40.741 0.00 0.00 0.00 2.52
450 451 6.912951 TCCCCCTTTAATAGTAGAGATTCG 57.087 41.667 0.00 0.00 0.00 3.34
451 452 5.245526 TCCCCCTTTAATAGTAGAGATTCGC 59.754 44.000 0.00 0.00 0.00 4.70
452 453 5.480205 CCCCTTTAATAGTAGAGATTCGCC 58.520 45.833 0.00 0.00 0.00 5.54
453 454 5.480205 CCCTTTAATAGTAGAGATTCGCCC 58.520 45.833 0.00 0.00 0.00 6.13
454 455 5.011738 CCCTTTAATAGTAGAGATTCGCCCA 59.988 44.000 0.00 0.00 0.00 5.36
455 456 6.295916 CCCTTTAATAGTAGAGATTCGCCCAT 60.296 42.308 0.00 0.00 0.00 4.00
456 457 7.093465 CCCTTTAATAGTAGAGATTCGCCCATA 60.093 40.741 0.00 0.00 0.00 2.74
457 458 8.478877 CCTTTAATAGTAGAGATTCGCCCATAT 58.521 37.037 0.00 0.00 0.00 1.78
458 459 9.307121 CTTTAATAGTAGAGATTCGCCCATATG 57.693 37.037 0.00 0.00 0.00 1.78
459 460 5.860941 ATAGTAGAGATTCGCCCATATGG 57.139 43.478 15.41 15.41 37.09 2.74
460 461 3.511477 AGTAGAGATTCGCCCATATGGT 58.489 45.455 20.46 0.83 36.04 3.55
461 462 2.847327 AGAGATTCGCCCATATGGTG 57.153 50.000 20.46 12.38 46.66 4.17
462 463 1.160137 GAGATTCGCCCATATGGTGC 58.840 55.000 20.46 20.01 44.80 5.01
466 467 4.562425 CGCCCATATGGTGCGGGT 62.562 66.667 32.77 0.00 44.99 5.28
467 468 2.123897 GCCCATATGGTGCGGGTT 60.124 61.111 20.46 0.00 42.44 4.11
468 469 1.149627 GCCCATATGGTGCGGGTTA 59.850 57.895 20.46 0.00 42.44 2.85
469 470 0.251165 GCCCATATGGTGCGGGTTAT 60.251 55.000 20.46 0.00 42.44 1.89
470 471 1.821216 CCCATATGGTGCGGGTTATC 58.179 55.000 20.46 0.00 35.03 1.75
471 472 1.613255 CCCATATGGTGCGGGTTATCC 60.613 57.143 20.46 0.00 35.03 2.59
482 483 2.689553 GGGTTATCCCGGACGTTTAA 57.310 50.000 0.73 0.00 44.74 1.52
483 484 2.554142 GGGTTATCCCGGACGTTTAAG 58.446 52.381 0.73 0.00 44.74 1.85
484 485 2.168313 GGGTTATCCCGGACGTTTAAGA 59.832 50.000 0.73 0.00 44.74 2.10
485 486 3.190079 GGTTATCCCGGACGTTTAAGAC 58.810 50.000 0.73 0.00 0.00 3.01
486 487 3.118992 GGTTATCCCGGACGTTTAAGACT 60.119 47.826 0.73 0.00 0.00 3.24
487 488 4.498241 GTTATCCCGGACGTTTAAGACTT 58.502 43.478 0.73 0.00 0.00 3.01
488 489 2.443887 TCCCGGACGTTTAAGACTTG 57.556 50.000 0.73 0.00 0.00 3.16
489 490 1.688197 TCCCGGACGTTTAAGACTTGT 59.312 47.619 0.73 0.00 0.00 3.16
490 491 2.102925 TCCCGGACGTTTAAGACTTGTT 59.897 45.455 0.73 0.00 0.00 2.83
491 492 2.874086 CCCGGACGTTTAAGACTTGTTT 59.126 45.455 0.73 0.00 0.00 2.83
492 493 3.303526 CCCGGACGTTTAAGACTTGTTTG 60.304 47.826 0.73 0.00 0.00 2.93
493 494 3.556775 CCGGACGTTTAAGACTTGTTTGA 59.443 43.478 0.00 0.00 0.00 2.69
494 495 4.034279 CCGGACGTTTAAGACTTGTTTGAA 59.966 41.667 0.00 0.00 0.00 2.69
495 496 5.195379 CGGACGTTTAAGACTTGTTTGAAG 58.805 41.667 0.00 0.00 0.00 3.02
496 497 4.968181 GGACGTTTAAGACTTGTTTGAAGC 59.032 41.667 0.00 0.00 0.00 3.86
497 498 4.584394 ACGTTTAAGACTTGTTTGAAGCG 58.416 39.130 0.00 0.40 0.00 4.68
498 499 3.417645 CGTTTAAGACTTGTTTGAAGCGC 59.582 43.478 0.00 0.00 0.00 5.92
499 500 3.619233 TTAAGACTTGTTTGAAGCGCC 57.381 42.857 2.29 0.00 0.00 6.53
500 501 0.668535 AAGACTTGTTTGAAGCGCCC 59.331 50.000 2.29 0.00 0.00 6.13
501 502 1.082104 GACTTGTTTGAAGCGCCCG 60.082 57.895 2.29 0.00 0.00 6.13
502 503 2.255252 CTTGTTTGAAGCGCCCGG 59.745 61.111 2.29 0.00 0.00 5.73
503 504 2.203224 TTGTTTGAAGCGCCCGGA 60.203 55.556 0.73 0.00 0.00 5.14
504 505 2.458006 CTTGTTTGAAGCGCCCGGAC 62.458 60.000 0.73 0.00 0.00 4.79
505 506 2.975799 GTTTGAAGCGCCCGGACA 60.976 61.111 0.73 0.00 0.00 4.02
506 507 2.033448 TTTGAAGCGCCCGGACAT 59.967 55.556 0.73 0.00 0.00 3.06
507 508 1.602323 TTTGAAGCGCCCGGACATT 60.602 52.632 0.73 0.00 0.00 2.71
508 509 1.175983 TTTGAAGCGCCCGGACATTT 61.176 50.000 0.73 0.00 0.00 2.32
509 510 1.175983 TTGAAGCGCCCGGACATTTT 61.176 50.000 0.73 0.00 0.00 1.82
510 511 1.136774 GAAGCGCCCGGACATTTTC 59.863 57.895 0.73 0.00 0.00 2.29
511 512 1.303317 AAGCGCCCGGACATTTTCT 60.303 52.632 0.73 0.00 0.00 2.52
512 513 0.893727 AAGCGCCCGGACATTTTCTT 60.894 50.000 0.73 0.00 0.00 2.52
513 514 1.154035 GCGCCCGGACATTTTCTTG 60.154 57.895 0.73 0.00 0.00 3.02
514 515 1.582610 GCGCCCGGACATTTTCTTGA 61.583 55.000 0.73 0.00 0.00 3.02
515 516 1.094785 CGCCCGGACATTTTCTTGAT 58.905 50.000 0.73 0.00 0.00 2.57
516 517 1.472480 CGCCCGGACATTTTCTTGATT 59.528 47.619 0.73 0.00 0.00 2.57
517 518 2.731968 CGCCCGGACATTTTCTTGATTG 60.732 50.000 0.73 0.00 0.00 2.67
518 519 2.417243 GCCCGGACATTTTCTTGATTGG 60.417 50.000 0.73 0.00 0.00 3.16
519 520 2.825532 CCCGGACATTTTCTTGATTGGT 59.174 45.455 0.73 0.00 0.00 3.67
520 521 3.367292 CCCGGACATTTTCTTGATTGGTG 60.367 47.826 0.73 0.00 0.00 4.17
521 522 3.505680 CCGGACATTTTCTTGATTGGTGA 59.494 43.478 0.00 0.00 0.00 4.02
522 523 4.475944 CGGACATTTTCTTGATTGGTGAC 58.524 43.478 0.00 0.00 0.00 3.67
523 524 4.615912 CGGACATTTTCTTGATTGGTGACC 60.616 45.833 0.00 0.00 0.00 4.02
524 525 4.280677 GGACATTTTCTTGATTGGTGACCA 59.719 41.667 0.00 0.00 0.00 4.02
525 526 5.458041 ACATTTTCTTGATTGGTGACCAG 57.542 39.130 3.77 0.00 33.81 4.00
526 527 4.281688 ACATTTTCTTGATTGGTGACCAGG 59.718 41.667 3.77 0.00 33.81 4.45
527 528 1.909700 TTCTTGATTGGTGACCAGGC 58.090 50.000 3.77 1.31 33.81 4.85
528 529 0.038166 TCTTGATTGGTGACCAGGCC 59.962 55.000 3.77 0.00 33.81 5.19
529 530 1.303236 TTGATTGGTGACCAGGCCG 60.303 57.895 3.77 0.00 33.81 6.13
530 531 2.063015 TTGATTGGTGACCAGGCCGT 62.063 55.000 3.77 0.00 33.81 5.68
531 532 1.745489 GATTGGTGACCAGGCCGTC 60.745 63.158 3.77 0.00 33.81 4.79
532 533 2.185310 GATTGGTGACCAGGCCGTCT 62.185 60.000 3.77 0.00 33.81 4.18
533 534 0.907704 ATTGGTGACCAGGCCGTCTA 60.908 55.000 3.77 0.00 33.81 2.59
534 535 0.907704 TTGGTGACCAGGCCGTCTAT 60.908 55.000 3.77 0.00 33.81 1.98
535 536 1.144057 GGTGACCAGGCCGTCTATG 59.856 63.158 11.48 0.00 33.70 2.23
536 537 1.327690 GGTGACCAGGCCGTCTATGA 61.328 60.000 11.48 0.00 33.70 2.15
537 538 0.103208 GTGACCAGGCCGTCTATGAG 59.897 60.000 11.48 0.00 33.70 2.90
538 539 1.043116 TGACCAGGCCGTCTATGAGG 61.043 60.000 11.48 1.59 33.70 3.86
539 540 1.749334 GACCAGGCCGTCTATGAGGG 61.749 65.000 0.00 2.31 40.18 4.30
540 541 2.511452 CCAGGCCGTCTATGAGGGG 61.511 68.421 0.00 0.00 37.97 4.79
541 542 2.122813 AGGCCGTCTATGAGGGGG 60.123 66.667 0.00 0.00 37.97 5.40
542 543 2.446036 GGCCGTCTATGAGGGGGT 60.446 66.667 8.15 0.00 37.97 4.95
543 544 2.070650 GGCCGTCTATGAGGGGGTT 61.071 63.158 8.15 0.00 37.97 4.11
544 545 1.632965 GGCCGTCTATGAGGGGGTTT 61.633 60.000 8.15 0.00 37.97 3.27
545 546 0.463833 GCCGTCTATGAGGGGGTTTG 60.464 60.000 8.15 0.00 37.97 2.93
546 547 1.200519 CCGTCTATGAGGGGGTTTGA 58.799 55.000 0.00 0.00 34.37 2.69
547 548 1.139058 CCGTCTATGAGGGGGTTTGAG 59.861 57.143 0.00 0.00 34.37 3.02
548 549 1.831736 CGTCTATGAGGGGGTTTGAGT 59.168 52.381 0.00 0.00 0.00 3.41
549 550 2.159085 CGTCTATGAGGGGGTTTGAGTC 60.159 54.545 0.00 0.00 0.00 3.36
550 551 2.108168 TCTATGAGGGGGTTTGAGTCG 58.892 52.381 0.00 0.00 0.00 4.18
551 552 2.108168 CTATGAGGGGGTTTGAGTCGA 58.892 52.381 0.00 0.00 0.00 4.20
552 553 0.905357 ATGAGGGGGTTTGAGTCGAG 59.095 55.000 0.00 0.00 0.00 4.04
553 554 1.079057 GAGGGGGTTTGAGTCGAGC 60.079 63.158 0.00 0.00 0.00 5.03
554 555 2.434359 GGGGGTTTGAGTCGAGCG 60.434 66.667 0.00 0.00 0.00 5.03
555 556 2.654877 GGGGTTTGAGTCGAGCGA 59.345 61.111 0.00 0.00 0.00 4.93
556 557 1.218316 GGGGTTTGAGTCGAGCGAT 59.782 57.895 0.00 0.00 0.00 4.58
557 558 0.391263 GGGGTTTGAGTCGAGCGATT 60.391 55.000 0.00 0.00 0.00 3.34
558 559 0.721718 GGGTTTGAGTCGAGCGATTG 59.278 55.000 0.00 0.00 0.00 2.67
559 560 1.671850 GGGTTTGAGTCGAGCGATTGA 60.672 52.381 0.00 0.00 0.00 2.57
560 561 2.066262 GGTTTGAGTCGAGCGATTGAA 58.934 47.619 0.00 0.00 0.00 2.69
561 562 2.092838 GGTTTGAGTCGAGCGATTGAAG 59.907 50.000 0.00 0.00 0.00 3.02
562 563 2.987149 GTTTGAGTCGAGCGATTGAAGA 59.013 45.455 0.00 0.00 0.00 2.87
563 564 3.510388 TTGAGTCGAGCGATTGAAGAT 57.490 42.857 0.00 0.00 0.00 2.40
564 565 2.802256 TGAGTCGAGCGATTGAAGATG 58.198 47.619 0.00 0.00 0.00 2.90
565 566 1.520590 GAGTCGAGCGATTGAAGATGC 59.479 52.381 0.00 0.00 0.00 3.91
566 567 1.135915 AGTCGAGCGATTGAAGATGCT 59.864 47.619 0.00 0.00 41.11 3.79
570 571 2.975732 AGCGATTGAAGATGCTCTGA 57.024 45.000 0.00 0.00 30.37 3.27
571 572 3.472283 AGCGATTGAAGATGCTCTGAT 57.528 42.857 0.00 0.00 30.37 2.90
572 573 3.132160 AGCGATTGAAGATGCTCTGATG 58.868 45.455 0.00 0.00 30.37 3.07
573 574 3.129109 GCGATTGAAGATGCTCTGATGA 58.871 45.455 0.00 0.00 0.00 2.92
574 575 3.184783 GCGATTGAAGATGCTCTGATGAG 59.815 47.826 0.00 0.00 42.96 2.90
575 576 4.618965 CGATTGAAGATGCTCTGATGAGA 58.381 43.478 0.00 0.00 42.73 3.27
576 577 5.231702 CGATTGAAGATGCTCTGATGAGAT 58.768 41.667 0.00 0.00 42.73 2.75
577 578 5.697178 CGATTGAAGATGCTCTGATGAGATT 59.303 40.000 0.00 0.00 42.73 2.40
578 579 6.346999 CGATTGAAGATGCTCTGATGAGATTG 60.347 42.308 0.00 0.00 42.73 2.67
579 580 5.609533 TGAAGATGCTCTGATGAGATTGA 57.390 39.130 0.00 0.00 42.73 2.57
580 581 6.176014 TGAAGATGCTCTGATGAGATTGAT 57.824 37.500 0.00 0.00 42.73 2.57
581 582 6.224584 TGAAGATGCTCTGATGAGATTGATC 58.775 40.000 0.00 0.00 42.73 2.92
582 583 5.155278 AGATGCTCTGATGAGATTGATCC 57.845 43.478 0.00 0.00 42.73 3.36
583 584 3.766068 TGCTCTGATGAGATTGATCCC 57.234 47.619 0.00 0.00 42.73 3.85
584 585 2.371179 TGCTCTGATGAGATTGATCCCC 59.629 50.000 0.00 0.00 42.73 4.81
585 586 2.638855 GCTCTGATGAGATTGATCCCCT 59.361 50.000 0.00 0.00 42.73 4.79
586 587 3.557475 GCTCTGATGAGATTGATCCCCTG 60.557 52.174 0.00 0.00 42.73 4.45
587 588 2.977580 TCTGATGAGATTGATCCCCTGG 59.022 50.000 0.00 0.00 0.00 4.45
588 589 2.977580 CTGATGAGATTGATCCCCTGGA 59.022 50.000 0.00 0.00 35.55 3.86
589 590 2.707791 TGATGAGATTGATCCCCTGGAC 59.292 50.000 0.00 0.00 32.98 4.02
590 591 1.123077 TGAGATTGATCCCCTGGACG 58.877 55.000 0.00 0.00 32.98 4.79
591 592 0.250081 GAGATTGATCCCCTGGACGC 60.250 60.000 0.00 0.00 32.98 5.19
592 593 1.227973 GATTGATCCCCTGGACGCC 60.228 63.158 0.00 0.00 32.98 5.68
593 594 1.983119 GATTGATCCCCTGGACGCCA 61.983 60.000 0.00 0.00 32.98 5.69
594 595 1.355718 ATTGATCCCCTGGACGCCAT 61.356 55.000 0.00 0.00 32.98 4.40
595 596 1.983119 TTGATCCCCTGGACGCCATC 61.983 60.000 0.00 0.00 32.98 3.51
596 597 2.366837 ATCCCCTGGACGCCATCA 60.367 61.111 0.00 0.00 32.98 3.07
597 598 1.771746 ATCCCCTGGACGCCATCAT 60.772 57.895 0.00 0.00 32.98 2.45
598 599 1.772819 ATCCCCTGGACGCCATCATC 61.773 60.000 0.00 0.00 32.98 2.92
599 600 2.446848 CCCCTGGACGCCATCATCT 61.447 63.158 0.00 0.00 30.82 2.90
600 601 1.227764 CCCTGGACGCCATCATCTG 60.228 63.158 0.00 0.00 30.82 2.90
601 602 1.689243 CCCTGGACGCCATCATCTGA 61.689 60.000 0.00 0.00 30.82 3.27
602 603 0.178767 CCTGGACGCCATCATCTGAA 59.821 55.000 0.00 0.00 30.82 3.02
603 604 1.202734 CCTGGACGCCATCATCTGAAT 60.203 52.381 0.00 0.00 30.82 2.57
604 605 2.569059 CTGGACGCCATCATCTGAATT 58.431 47.619 0.00 0.00 30.82 2.17
605 606 2.547211 CTGGACGCCATCATCTGAATTC 59.453 50.000 0.00 0.00 30.82 2.17
606 607 2.171237 TGGACGCCATCATCTGAATTCT 59.829 45.455 7.05 0.00 0.00 2.40
607 608 2.547211 GGACGCCATCATCTGAATTCTG 59.453 50.000 7.05 6.50 0.00 3.02
608 609 3.461061 GACGCCATCATCTGAATTCTGA 58.539 45.455 16.27 16.27 0.00 3.27
609 610 4.063689 GACGCCATCATCTGAATTCTGAT 58.936 43.478 19.02 19.02 35.33 2.90
610 611 4.063689 ACGCCATCATCTGAATTCTGATC 58.936 43.478 21.18 11.27 33.14 2.92
611 612 3.123116 CGCCATCATCTGAATTCTGATCG 59.877 47.826 21.18 17.44 33.14 3.69
612 613 4.313282 GCCATCATCTGAATTCTGATCGA 58.687 43.478 21.18 20.20 33.14 3.59
613 614 4.152045 GCCATCATCTGAATTCTGATCGAC 59.848 45.833 21.18 8.85 33.14 4.20
614 615 5.539979 CCATCATCTGAATTCTGATCGACT 58.460 41.667 21.18 2.78 33.14 4.18
615 616 5.634439 CCATCATCTGAATTCTGATCGACTC 59.366 44.000 21.18 0.00 33.14 3.36
616 617 6.448852 CATCATCTGAATTCTGATCGACTCT 58.551 40.000 21.18 8.35 33.14 3.24
617 618 6.070897 TCATCTGAATTCTGATCGACTCTC 57.929 41.667 21.18 0.00 33.14 3.20
618 619 5.827267 TCATCTGAATTCTGATCGACTCTCT 59.173 40.000 21.18 0.18 33.14 3.10
619 620 5.497635 TCTGAATTCTGATCGACTCTCTG 57.502 43.478 10.68 0.00 0.00 3.35
620 621 4.039151 TGAATTCTGATCGACTCTCTGC 57.961 45.455 7.05 0.00 0.00 4.26
621 622 3.181482 TGAATTCTGATCGACTCTCTGCC 60.181 47.826 7.05 0.00 0.00 4.85
622 623 2.136298 TTCTGATCGACTCTCTGCCT 57.864 50.000 0.00 0.00 0.00 4.75
623 624 1.387539 TCTGATCGACTCTCTGCCTG 58.612 55.000 0.00 0.00 0.00 4.85
624 625 0.385029 CTGATCGACTCTCTGCCTGG 59.615 60.000 0.00 0.00 0.00 4.45
625 626 0.034089 TGATCGACTCTCTGCCTGGA 60.034 55.000 0.00 0.00 0.00 3.86
651 652 1.421410 CTAACTGCATGCCGACCGAC 61.421 60.000 16.68 0.00 0.00 4.79
664 665 1.421410 GACCGACGCCACATGCTTAG 61.421 60.000 0.00 0.00 38.05 2.18
672 676 2.483714 CGCCACATGCTTAGTCCAGTAT 60.484 50.000 0.00 0.00 38.05 2.12
859 867 0.181350 GCTTTCCCATCGGAGGTGAT 59.819 55.000 0.00 0.00 40.10 3.06
860 868 1.959042 CTTTCCCATCGGAGGTGATG 58.041 55.000 0.00 0.00 44.29 3.07
864 872 1.689243 CCCATCGGAGGTGATGAGCA 61.689 60.000 5.35 0.00 46.98 4.26
865 873 0.249784 CCATCGGAGGTGATGAGCAG 60.250 60.000 5.35 0.00 46.98 4.24
866 874 0.879400 CATCGGAGGTGATGAGCAGC 60.879 60.000 0.00 0.00 46.98 5.25
867 875 2.037620 ATCGGAGGTGATGAGCAGCC 62.038 60.000 0.00 0.00 46.03 4.85
868 876 2.729479 CGGAGGTGATGAGCAGCCT 61.729 63.158 0.00 0.00 46.03 4.58
869 877 1.145819 GGAGGTGATGAGCAGCCTC 59.854 63.158 9.75 9.75 46.03 4.70
870 878 1.227205 GAGGTGATGAGCAGCCTCG 60.227 63.158 0.00 0.00 46.03 4.63
931 940 1.660607 CACACACTCACTCACACACAC 59.339 52.381 0.00 0.00 0.00 3.82
993 1029 1.374631 CACTAGCTTGCACGCTCCA 60.375 57.895 22.25 4.06 41.30 3.86
1378 2348 0.382158 TCGTCTGAGGATCGTGATGC 59.618 55.000 0.00 0.00 38.61 3.91
1405 2376 1.069227 GTCTGAATTTTTGAGCGCGGT 60.069 47.619 12.23 12.23 0.00 5.68
1515 2497 5.163302 TGAAGTTGTGTTTTGTATCGTGG 57.837 39.130 0.00 0.00 0.00 4.94
1564 2553 1.591158 CATCGTTGATTTACCGGACCG 59.409 52.381 9.46 6.99 0.00 4.79
1566 2555 1.135315 TCGTTGATTTACCGGACCGAG 60.135 52.381 17.49 8.21 0.00 4.63
1586 2575 2.127421 TCATGCGCGCGTGAAAAC 60.127 55.556 44.15 14.02 38.81 2.43
1593 2582 1.641677 GCGCGTGAAAACAGTGAGT 59.358 52.632 8.43 0.00 0.00 3.41
1600 2589 4.260620 GCGTGAAAACAGTGAGTAACATGT 60.261 41.667 0.00 0.00 0.00 3.21
1601 2590 5.729454 GCGTGAAAACAGTGAGTAACATGTT 60.729 40.000 16.68 16.68 37.47 2.71
1602 2591 6.255215 CGTGAAAACAGTGAGTAACATGTTT 58.745 36.000 17.78 0.00 45.21 2.83
1763 2753 2.780010 CCTATCCAGTTGATGAAGGGGT 59.220 50.000 0.00 0.00 34.76 4.95
1777 2767 0.768221 AGGGGTGCTGAAAGTCTGGA 60.768 55.000 0.00 0.00 35.30 3.86
1791 2782 9.388506 CTGAAAGTCTGGACTAATATCAAACAT 57.611 33.333 3.54 0.00 41.58 2.71
1943 2935 3.582647 TGCCACTAAACCATCTTCAGAGA 59.417 43.478 0.00 0.00 36.09 3.10
2057 3049 4.069232 CAGGCGCCGAGTCTCCAA 62.069 66.667 23.20 0.00 28.06 3.53
2114 3106 0.326264 AAGATGAAGCACCGCTCCTT 59.674 50.000 0.00 0.00 38.25 3.36
2195 3188 1.471287 TCGAAACATCGTCATCGTCCT 59.529 47.619 0.00 0.00 36.70 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.804931 GTCATTTGTTGCGCCGCC 60.805 61.111 6.63 0.00 0.00 6.13
2 3 2.501607 TACGTCATTTGTTGCGCCGC 62.502 55.000 4.18 0.00 0.00 6.53
3 4 0.518355 CTACGTCATTTGTTGCGCCG 60.518 55.000 4.18 0.00 0.00 6.46
4 5 0.793861 TCTACGTCATTTGTTGCGCC 59.206 50.000 4.18 0.00 0.00 6.53
5 6 1.201921 CCTCTACGTCATTTGTTGCGC 60.202 52.381 0.00 0.00 0.00 6.09
6 7 1.393539 CCCTCTACGTCATTTGTTGCG 59.606 52.381 0.00 0.00 0.00 4.85
7 8 1.130561 GCCCTCTACGTCATTTGTTGC 59.869 52.381 0.00 0.00 0.00 4.17
8 9 1.393539 CGCCCTCTACGTCATTTGTTG 59.606 52.381 0.00 0.00 0.00 3.33
9 10 1.274167 TCGCCCTCTACGTCATTTGTT 59.726 47.619 0.00 0.00 0.00 2.83
10 11 0.892755 TCGCCCTCTACGTCATTTGT 59.107 50.000 0.00 0.00 0.00 2.83
11 12 2.128035 GATCGCCCTCTACGTCATTTG 58.872 52.381 0.00 0.00 0.00 2.32
12 13 1.269102 CGATCGCCCTCTACGTCATTT 60.269 52.381 0.26 0.00 0.00 2.32
13 14 0.311165 CGATCGCCCTCTACGTCATT 59.689 55.000 0.26 0.00 0.00 2.57
14 15 1.950007 CGATCGCCCTCTACGTCAT 59.050 57.895 0.26 0.00 0.00 3.06
15 16 2.831366 GCGATCGCCCTCTACGTCA 61.831 63.158 29.48 0.00 34.56 4.35
16 17 2.051166 GCGATCGCCCTCTACGTC 60.051 66.667 29.48 0.00 34.56 4.34
39 40 3.152703 CGTACAGCGAACCAACCG 58.847 61.111 0.00 0.00 44.77 4.44
47 48 3.304288 TGTTCGACGTTCGTACAGCGA 62.304 52.381 12.90 0.51 43.36 4.93
48 49 0.993251 TGTTCGACGTTCGTACAGCG 60.993 55.000 12.90 0.00 43.36 5.18
49 50 2.787259 TGTTCGACGTTCGTACAGC 58.213 52.632 12.90 0.00 43.36 4.40
51 52 1.111667 CGTTGTTCGACGTTCGTACA 58.888 50.000 12.90 12.90 45.77 2.90
52 53 0.179324 GCGTTGTTCGACGTTCGTAC 60.179 55.000 13.04 0.00 44.50 3.67
53 54 1.268113 GGCGTTGTTCGACGTTCGTA 61.268 55.000 13.04 0.00 44.50 3.43
54 55 2.579574 GGCGTTGTTCGACGTTCGT 61.580 57.895 13.04 0.00 44.50 3.85
55 56 2.166985 GGCGTTGTTCGACGTTCG 59.833 61.111 13.04 0.00 44.50 3.95
60 61 2.370393 GGTCTCGGCGTTGTTCGAC 61.370 63.158 6.85 5.37 45.27 4.20
61 62 2.049802 GGTCTCGGCGTTGTTCGA 60.050 61.111 6.85 0.00 42.86 3.71
62 63 3.110178 GGGTCTCGGCGTTGTTCG 61.110 66.667 6.85 0.00 43.12 3.95
63 64 2.029964 TGGGTCTCGGCGTTGTTC 59.970 61.111 6.85 0.00 0.00 3.18
64 65 2.280592 GTGGGTCTCGGCGTTGTT 60.281 61.111 6.85 0.00 0.00 2.83
65 66 3.515316 CTGTGGGTCTCGGCGTTGT 62.515 63.158 6.85 0.00 0.00 3.32
66 67 2.738521 CTGTGGGTCTCGGCGTTG 60.739 66.667 6.85 1.06 0.00 4.10
67 68 4.681978 GCTGTGGGTCTCGGCGTT 62.682 66.667 6.85 0.00 0.00 4.84
70 71 4.008933 ACTGCTGTGGGTCTCGGC 62.009 66.667 0.00 0.00 37.66 5.54
71 72 2.047844 CACTGCTGTGGGTCTCGG 60.048 66.667 15.43 0.00 40.33 4.63
79 80 0.940126 GAACTGACACCACTGCTGTG 59.060 55.000 16.20 16.20 43.45 3.66
80 81 0.833287 AGAACTGACACCACTGCTGT 59.167 50.000 0.00 0.00 0.00 4.40
81 82 1.224075 CAGAACTGACACCACTGCTG 58.776 55.000 0.00 0.00 0.00 4.41
82 83 0.833287 ACAGAACTGACACCACTGCT 59.167 50.000 8.87 0.00 32.67 4.24
83 84 1.221414 GACAGAACTGACACCACTGC 58.779 55.000 8.87 0.00 32.67 4.40
84 85 2.477825 CTGACAGAACTGACACCACTG 58.522 52.381 8.87 0.00 32.39 3.66
85 86 1.414181 CCTGACAGAACTGACACCACT 59.586 52.381 3.32 0.00 32.39 4.00
86 87 1.139058 ACCTGACAGAACTGACACCAC 59.861 52.381 3.32 0.00 32.39 4.16
87 88 1.138859 CACCTGACAGAACTGACACCA 59.861 52.381 3.32 1.12 32.39 4.17
88 89 1.541233 CCACCTGACAGAACTGACACC 60.541 57.143 3.32 0.00 32.39 4.16
89 90 1.871080 CCACCTGACAGAACTGACAC 58.129 55.000 3.32 1.22 32.39 3.67
90 91 0.106708 GCCACCTGACAGAACTGACA 59.893 55.000 3.32 7.70 34.43 3.58
91 92 0.946221 CGCCACCTGACAGAACTGAC 60.946 60.000 3.32 3.20 0.00 3.51
92 93 1.367471 CGCCACCTGACAGAACTGA 59.633 57.895 3.32 0.00 0.00 3.41
93 94 1.669115 CCGCCACCTGACAGAACTG 60.669 63.158 3.32 0.00 0.00 3.16
94 95 2.743718 CCGCCACCTGACAGAACT 59.256 61.111 3.32 0.00 0.00 3.01
95 96 2.358737 CCCGCCACCTGACAGAAC 60.359 66.667 3.32 0.00 0.00 3.01
96 97 4.329545 GCCCGCCACCTGACAGAA 62.330 66.667 3.32 0.00 0.00 3.02
122 123 3.254654 ATCGTCAATGTCGCGCCG 61.255 61.111 0.00 0.00 0.00 6.46
123 124 2.321060 CATCGTCAATGTCGCGCC 59.679 61.111 0.00 0.00 0.00 6.53
124 125 2.321060 CCATCGTCAATGTCGCGC 59.679 61.111 0.00 0.00 33.13 6.86
125 126 1.482621 CTCCCATCGTCAATGTCGCG 61.483 60.000 0.00 0.00 33.13 5.87
126 127 1.154205 CCTCCCATCGTCAATGTCGC 61.154 60.000 0.00 0.00 33.13 5.19
127 128 0.530650 CCCTCCCATCGTCAATGTCG 60.531 60.000 0.00 0.00 33.13 4.35
128 129 0.830648 TCCCTCCCATCGTCAATGTC 59.169 55.000 0.00 0.00 33.13 3.06
129 130 0.541863 GTCCCTCCCATCGTCAATGT 59.458 55.000 0.00 0.00 33.13 2.71
130 131 0.530650 CGTCCCTCCCATCGTCAATG 60.531 60.000 0.00 0.00 34.93 2.82
131 132 1.686325 CCGTCCCTCCCATCGTCAAT 61.686 60.000 0.00 0.00 0.00 2.57
132 133 2.355986 CCGTCCCTCCCATCGTCAA 61.356 63.158 0.00 0.00 0.00 3.18
133 134 2.758327 CCGTCCCTCCCATCGTCA 60.758 66.667 0.00 0.00 0.00 4.35
134 135 2.441532 TCCGTCCCTCCCATCGTC 60.442 66.667 0.00 0.00 0.00 4.20
135 136 2.442272 CTCCGTCCCTCCCATCGT 60.442 66.667 0.00 0.00 0.00 3.73
136 137 3.227276 CCTCCGTCCCTCCCATCG 61.227 72.222 0.00 0.00 0.00 3.84
137 138 2.844839 CCCTCCGTCCCTCCCATC 60.845 72.222 0.00 0.00 0.00 3.51
138 139 3.364964 TCCCTCCGTCCCTCCCAT 61.365 66.667 0.00 0.00 0.00 4.00
139 140 4.075793 CTCCCTCCGTCCCTCCCA 62.076 72.222 0.00 0.00 0.00 4.37
140 141 4.862823 CCTCCCTCCGTCCCTCCC 62.863 77.778 0.00 0.00 0.00 4.30
141 142 4.862823 CCCTCCCTCCGTCCCTCC 62.863 77.778 0.00 0.00 0.00 4.30
150 151 3.787001 CAGTTCCCGCCCTCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
153 154 3.787001 CTCCAGTTCCCGCCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
154 155 3.787001 CCTCCAGTTCCCGCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
155 156 4.658786 ACCTCCAGTTCCCGCCCT 62.659 66.667 0.00 0.00 0.00 5.19
156 157 4.410400 CACCTCCAGTTCCCGCCC 62.410 72.222 0.00 0.00 0.00 6.13
158 159 4.021925 AGCACCTCCAGTTCCCGC 62.022 66.667 0.00 0.00 0.00 6.13
159 160 2.046892 CAGCACCTCCAGTTCCCG 60.047 66.667 0.00 0.00 0.00 5.14
160 161 1.779061 TTCCAGCACCTCCAGTTCCC 61.779 60.000 0.00 0.00 0.00 3.97
161 162 0.110486 TTTCCAGCACCTCCAGTTCC 59.890 55.000 0.00 0.00 0.00 3.62
162 163 1.072331 TCTTTCCAGCACCTCCAGTTC 59.928 52.381 0.00 0.00 0.00 3.01
163 164 1.072965 CTCTTTCCAGCACCTCCAGTT 59.927 52.381 0.00 0.00 0.00 3.16
164 165 0.689623 CTCTTTCCAGCACCTCCAGT 59.310 55.000 0.00 0.00 0.00 4.00
165 166 0.035630 CCTCTTTCCAGCACCTCCAG 60.036 60.000 0.00 0.00 0.00 3.86
166 167 1.492133 CCCTCTTTCCAGCACCTCCA 61.492 60.000 0.00 0.00 0.00 3.86
167 168 1.301293 CCCTCTTTCCAGCACCTCC 59.699 63.158 0.00 0.00 0.00 4.30
168 169 1.301293 CCCCTCTTTCCAGCACCTC 59.699 63.158 0.00 0.00 0.00 3.85
169 170 2.234296 CCCCCTCTTTCCAGCACCT 61.234 63.158 0.00 0.00 0.00 4.00
170 171 2.203549 CTCCCCCTCTTTCCAGCACC 62.204 65.000 0.00 0.00 0.00 5.01
171 172 1.301293 CTCCCCCTCTTTCCAGCAC 59.699 63.158 0.00 0.00 0.00 4.40
172 173 1.925455 CCTCCCCCTCTTTCCAGCA 60.925 63.158 0.00 0.00 0.00 4.41
173 174 2.684499 CCCTCCCCCTCTTTCCAGC 61.684 68.421 0.00 0.00 0.00 4.85
174 175 2.003548 CCCCTCCCCCTCTTTCCAG 61.004 68.421 0.00 0.00 0.00 3.86
175 176 2.127297 CCCCTCCCCCTCTTTCCA 59.873 66.667 0.00 0.00 0.00 3.53
176 177 2.696504 CCCCCTCCCCCTCTTTCC 60.697 72.222 0.00 0.00 0.00 3.13
177 178 1.230182 TTCCCCCTCCCCCTCTTTC 60.230 63.158 0.00 0.00 0.00 2.62
178 179 1.230314 CTTCCCCCTCCCCCTCTTT 60.230 63.158 0.00 0.00 0.00 2.52
179 180 1.550480 ATCTTCCCCCTCCCCCTCTT 61.550 60.000 0.00 0.00 0.00 2.85
180 181 1.954994 ATCTTCCCCCTCCCCCTCT 60.955 63.158 0.00 0.00 0.00 3.69
181 182 1.462432 GATCTTCCCCCTCCCCCTC 60.462 68.421 0.00 0.00 0.00 4.30
182 183 2.272170 TGATCTTCCCCCTCCCCCT 61.272 63.158 0.00 0.00 0.00 4.79
183 184 2.079288 GTGATCTTCCCCCTCCCCC 61.079 68.421 0.00 0.00 0.00 5.40
184 185 2.444256 CGTGATCTTCCCCCTCCCC 61.444 68.421 0.00 0.00 0.00 4.81
185 186 1.687297 GACGTGATCTTCCCCCTCCC 61.687 65.000 0.00 0.00 0.00 4.30
186 187 0.976073 TGACGTGATCTTCCCCCTCC 60.976 60.000 0.00 0.00 0.00 4.30
187 188 0.461961 CTGACGTGATCTTCCCCCTC 59.538 60.000 0.00 0.00 0.00 4.30
188 189 1.617947 GCTGACGTGATCTTCCCCCT 61.618 60.000 0.00 0.00 0.00 4.79
189 190 1.153349 GCTGACGTGATCTTCCCCC 60.153 63.158 0.00 0.00 0.00 5.40
190 191 0.460987 CTGCTGACGTGATCTTCCCC 60.461 60.000 0.00 0.00 0.00 4.81
191 192 0.247736 ACTGCTGACGTGATCTTCCC 59.752 55.000 0.00 0.00 0.00 3.97
192 193 2.803451 CTACTGCTGACGTGATCTTCC 58.197 52.381 0.00 0.00 0.00 3.46
193 194 2.189342 GCTACTGCTGACGTGATCTTC 58.811 52.381 0.00 0.00 36.03 2.87
194 195 1.468224 CGCTACTGCTGACGTGATCTT 60.468 52.381 0.00 0.00 36.97 2.40
195 196 0.099613 CGCTACTGCTGACGTGATCT 59.900 55.000 0.00 0.00 36.97 2.75
196 197 1.475441 GCGCTACTGCTGACGTGATC 61.475 60.000 0.00 0.00 36.97 2.92
197 198 1.517257 GCGCTACTGCTGACGTGAT 60.517 57.895 0.00 0.00 36.97 3.06
198 199 2.126463 GCGCTACTGCTGACGTGA 60.126 61.111 0.00 0.00 36.97 4.35
199 200 2.126307 AGCGCTACTGCTGACGTG 60.126 61.111 8.99 0.00 45.28 4.49
206 207 4.577246 CCCTCCGAGCGCTACTGC 62.577 72.222 11.50 0.00 0.00 4.40
207 208 2.196925 ATCCCTCCGAGCGCTACTG 61.197 63.158 11.50 2.79 0.00 2.74
208 209 2.196229 ATCCCTCCGAGCGCTACT 59.804 61.111 11.50 0.00 0.00 2.57
209 210 2.336809 CATCCCTCCGAGCGCTAC 59.663 66.667 11.50 2.92 0.00 3.58
210 211 3.606662 GCATCCCTCCGAGCGCTA 61.607 66.667 11.50 0.00 0.00 4.26
258 259 2.282462 AAAACCTCCGCAGCCCTG 60.282 61.111 0.00 0.00 0.00 4.45
259 260 2.034221 GAAAACCTCCGCAGCCCT 59.966 61.111 0.00 0.00 0.00 5.19
260 261 2.791501 TACGAAAACCTCCGCAGCCC 62.792 60.000 0.00 0.00 0.00 5.19
261 262 1.359459 CTACGAAAACCTCCGCAGCC 61.359 60.000 0.00 0.00 0.00 4.85
262 263 0.389426 TCTACGAAAACCTCCGCAGC 60.389 55.000 0.00 0.00 0.00 5.25
263 264 2.194271 GATCTACGAAAACCTCCGCAG 58.806 52.381 0.00 0.00 0.00 5.18
264 265 1.468565 CGATCTACGAAAACCTCCGCA 60.469 52.381 0.00 0.00 45.77 5.69
265 266 1.197910 CGATCTACGAAAACCTCCGC 58.802 55.000 0.00 0.00 45.77 5.54
266 267 2.182825 CACGATCTACGAAAACCTCCG 58.817 52.381 0.00 0.00 45.77 4.63
267 268 2.537401 CCACGATCTACGAAAACCTCC 58.463 52.381 0.00 0.00 45.77 4.30
268 269 1.925185 GCCACGATCTACGAAAACCTC 59.075 52.381 0.00 0.00 45.77 3.85
269 270 1.405121 GGCCACGATCTACGAAAACCT 60.405 52.381 0.00 0.00 45.77 3.50
270 271 1.004595 GGCCACGATCTACGAAAACC 58.995 55.000 0.00 0.00 45.77 3.27
271 272 1.004595 GGGCCACGATCTACGAAAAC 58.995 55.000 4.39 0.00 45.77 2.43
272 273 3.446507 GGGCCACGATCTACGAAAA 57.553 52.632 4.39 0.00 45.77 2.29
289 290 4.540735 GTATCCACGCCCCCACGG 62.541 72.222 0.00 0.00 37.37 4.94
290 291 4.884257 CGTATCCACGCCCCCACG 62.884 72.222 0.00 0.00 42.05 4.94
318 319 2.725008 CCAACCGCGCAGGAAAAA 59.275 55.556 22.10 0.00 45.00 1.94
319 320 3.291383 CCCAACCGCGCAGGAAAA 61.291 61.111 22.10 0.00 45.00 2.29
320 321 2.186602 TATCCCAACCGCGCAGGAAA 62.187 55.000 22.10 4.47 45.00 3.13
321 322 1.978455 ATATCCCAACCGCGCAGGAA 61.978 55.000 22.10 0.00 45.00 3.36
322 323 1.116536 TATATCCCAACCGCGCAGGA 61.117 55.000 22.10 12.85 45.00 3.86
324 325 0.033504 AGTATATCCCAACCGCGCAG 59.966 55.000 8.75 0.00 0.00 5.18
325 326 1.000060 GTAGTATATCCCAACCGCGCA 60.000 52.381 8.75 0.00 0.00 6.09
326 327 1.706443 GTAGTATATCCCAACCGCGC 58.294 55.000 0.00 0.00 0.00 6.86
327 328 1.536766 TCGTAGTATATCCCAACCGCG 59.463 52.381 0.00 0.00 0.00 6.46
328 329 2.555757 AGTCGTAGTATATCCCAACCGC 59.444 50.000 0.00 0.00 0.00 5.68
329 330 3.817084 TCAGTCGTAGTATATCCCAACCG 59.183 47.826 0.00 0.00 0.00 4.44
330 331 5.979288 ATCAGTCGTAGTATATCCCAACC 57.021 43.478 0.00 0.00 0.00 3.77
331 332 7.208080 ACAAATCAGTCGTAGTATATCCCAAC 58.792 38.462 0.00 0.00 0.00 3.77
332 333 7.356089 ACAAATCAGTCGTAGTATATCCCAA 57.644 36.000 0.00 0.00 0.00 4.12
333 334 6.971726 ACAAATCAGTCGTAGTATATCCCA 57.028 37.500 0.00 0.00 0.00 4.37
334 335 8.958506 AGATACAAATCAGTCGTAGTATATCCC 58.041 37.037 0.00 0.00 34.28 3.85
338 339 9.481340 ACGTAGATACAAATCAGTCGTAGTATA 57.519 33.333 0.00 0.00 35.17 1.47
339 340 8.281194 CACGTAGATACAAATCAGTCGTAGTAT 58.719 37.037 0.00 0.00 35.17 2.12
340 341 7.254556 CCACGTAGATACAAATCAGTCGTAGTA 60.255 40.741 0.00 0.00 35.17 1.82
341 342 6.457934 CCACGTAGATACAAATCAGTCGTAGT 60.458 42.308 0.00 0.00 35.17 2.73
342 343 5.907945 CCACGTAGATACAAATCAGTCGTAG 59.092 44.000 0.00 0.00 35.17 3.51
343 344 5.220912 CCCACGTAGATACAAATCAGTCGTA 60.221 44.000 0.00 0.00 35.17 3.43
344 345 4.439700 CCCACGTAGATACAAATCAGTCGT 60.440 45.833 0.00 0.00 36.31 4.34
345 346 4.042398 CCCACGTAGATACAAATCAGTCG 58.958 47.826 0.00 0.00 34.28 4.18
346 347 5.007385 ACCCACGTAGATACAAATCAGTC 57.993 43.478 0.00 0.00 34.28 3.51
347 348 5.175859 CAACCCACGTAGATACAAATCAGT 58.824 41.667 0.00 0.00 34.28 3.41
348 349 5.175859 ACAACCCACGTAGATACAAATCAG 58.824 41.667 0.00 0.00 34.28 2.90
349 350 5.155278 ACAACCCACGTAGATACAAATCA 57.845 39.130 0.00 0.00 34.28 2.57
350 351 5.230726 CGTACAACCCACGTAGATACAAATC 59.769 44.000 0.00 0.00 34.74 2.17
351 352 5.104374 CGTACAACCCACGTAGATACAAAT 58.896 41.667 0.00 0.00 34.74 2.32
352 353 4.217334 TCGTACAACCCACGTAGATACAAA 59.783 41.667 0.00 0.00 40.27 2.83
353 354 3.755905 TCGTACAACCCACGTAGATACAA 59.244 43.478 0.00 0.00 40.27 2.41
354 355 3.342719 TCGTACAACCCACGTAGATACA 58.657 45.455 0.00 0.00 40.27 2.29
355 356 4.142600 ACTTCGTACAACCCACGTAGATAC 60.143 45.833 8.22 0.00 38.58 2.24
356 357 4.009675 ACTTCGTACAACCCACGTAGATA 58.990 43.478 8.22 0.00 38.58 1.98
357 358 2.821969 ACTTCGTACAACCCACGTAGAT 59.178 45.455 8.22 0.00 38.58 1.98
358 359 2.226437 GACTTCGTACAACCCACGTAGA 59.774 50.000 8.22 0.00 38.58 2.59
359 360 2.589014 GACTTCGTACAACCCACGTAG 58.411 52.381 0.00 0.00 41.04 3.51
360 361 1.069296 CGACTTCGTACAACCCACGTA 60.069 52.381 0.00 0.00 40.27 3.57
361 362 0.318107 CGACTTCGTACAACCCACGT 60.318 55.000 0.00 0.00 40.27 4.49
362 363 2.427360 CGACTTCGTACAACCCACG 58.573 57.895 0.00 0.00 40.72 4.94
373 374 0.172803 CCACCTCCCTTACGACTTCG 59.827 60.000 0.00 0.00 46.33 3.79
374 375 0.535797 CCCACCTCCCTTACGACTTC 59.464 60.000 0.00 0.00 0.00 3.01
375 376 0.908180 CCCCACCTCCCTTACGACTT 60.908 60.000 0.00 0.00 0.00 3.01
376 377 1.305887 CCCCACCTCCCTTACGACT 60.306 63.158 0.00 0.00 0.00 4.18
377 378 0.690077 ATCCCCACCTCCCTTACGAC 60.690 60.000 0.00 0.00 0.00 4.34
378 379 0.398098 GATCCCCACCTCCCTTACGA 60.398 60.000 0.00 0.00 0.00 3.43
379 380 1.745320 CGATCCCCACCTCCCTTACG 61.745 65.000 0.00 0.00 0.00 3.18
380 381 0.398098 TCGATCCCCACCTCCCTTAC 60.398 60.000 0.00 0.00 0.00 2.34
381 382 0.340558 TTCGATCCCCACCTCCCTTA 59.659 55.000 0.00 0.00 0.00 2.69
382 383 1.082206 TTCGATCCCCACCTCCCTT 59.918 57.895 0.00 0.00 0.00 3.95
383 384 1.689582 GTTCGATCCCCACCTCCCT 60.690 63.158 0.00 0.00 0.00 4.20
384 385 2.908796 GTTCGATCCCCACCTCCC 59.091 66.667 0.00 0.00 0.00 4.30
385 386 2.017559 CTCGTTCGATCCCCACCTCC 62.018 65.000 0.00 0.00 0.00 4.30
386 387 1.437986 CTCGTTCGATCCCCACCTC 59.562 63.158 0.00 0.00 0.00 3.85
387 388 2.058595 CCTCGTTCGATCCCCACCT 61.059 63.158 0.00 0.00 0.00 4.00
388 389 2.056223 TCCTCGTTCGATCCCCACC 61.056 63.158 0.00 0.00 0.00 4.61
389 390 1.141234 GTCCTCGTTCGATCCCCAC 59.859 63.158 0.00 0.00 0.00 4.61
390 391 2.412323 CGTCCTCGTTCGATCCCCA 61.412 63.158 0.00 0.00 0.00 4.96
391 392 1.660560 TTCGTCCTCGTTCGATCCCC 61.661 60.000 0.00 0.00 36.01 4.81
392 393 0.525029 GTTCGTCCTCGTTCGATCCC 60.525 60.000 0.00 0.00 36.01 3.85
393 394 0.525029 GGTTCGTCCTCGTTCGATCC 60.525 60.000 0.00 0.00 38.26 3.36
394 395 0.169672 TGGTTCGTCCTCGTTCGATC 59.830 55.000 0.00 0.00 36.01 3.69
395 396 0.815734 ATGGTTCGTCCTCGTTCGAT 59.184 50.000 0.00 0.00 36.01 3.59
396 397 0.169672 GATGGTTCGTCCTCGTTCGA 59.830 55.000 0.00 0.00 38.33 3.71
397 398 0.109458 TGATGGTTCGTCCTCGTTCG 60.109 55.000 1.80 0.00 38.33 3.95
398 399 1.347320 GTGATGGTTCGTCCTCGTTC 58.653 55.000 1.80 0.00 38.33 3.95
399 400 0.388134 CGTGATGGTTCGTCCTCGTT 60.388 55.000 1.80 0.00 38.33 3.85
400 401 1.211969 CGTGATGGTTCGTCCTCGT 59.788 57.895 1.80 0.00 38.33 4.18
401 402 0.797249 GTCGTGATGGTTCGTCCTCG 60.797 60.000 1.80 0.00 37.07 4.63
402 403 0.797249 CGTCGTGATGGTTCGTCCTC 60.797 60.000 1.80 0.00 37.07 3.71
403 404 1.211969 CGTCGTGATGGTTCGTCCT 59.788 57.895 1.80 0.00 37.07 3.85
404 405 0.168788 TACGTCGTGATGGTTCGTCC 59.831 55.000 8.47 0.00 36.24 4.79
405 406 1.253999 GTACGTCGTGATGGTTCGTC 58.746 55.000 8.47 0.00 36.24 4.20
406 407 0.453282 CGTACGTCGTGATGGTTCGT 60.453 55.000 8.47 0.00 38.30 3.85
407 408 0.179217 TCGTACGTCGTGATGGTTCG 60.179 55.000 16.05 2.10 40.80 3.95
408 409 2.107178 GATCGTACGTCGTGATGGTTC 58.893 52.381 16.05 0.00 40.80 3.62
409 410 1.202222 GGATCGTACGTCGTGATGGTT 60.202 52.381 16.05 0.00 40.80 3.67
410 411 0.379669 GGATCGTACGTCGTGATGGT 59.620 55.000 16.05 0.00 40.80 3.55
411 412 0.317603 GGGATCGTACGTCGTGATGG 60.318 60.000 16.05 0.00 40.80 3.51
412 413 0.317603 GGGGATCGTACGTCGTGATG 60.318 60.000 16.05 0.00 40.80 3.07
413 414 1.450531 GGGGGATCGTACGTCGTGAT 61.451 60.000 16.05 2.76 40.80 3.06
414 415 2.114670 GGGGGATCGTACGTCGTGA 61.115 63.158 16.05 0.00 40.80 4.35
415 416 1.660560 AAGGGGGATCGTACGTCGTG 61.661 60.000 16.05 0.00 40.80 4.35
416 417 0.967380 AAAGGGGGATCGTACGTCGT 60.967 55.000 16.05 2.21 40.80 4.34
417 418 1.024271 TAAAGGGGGATCGTACGTCG 58.976 55.000 16.05 0.00 41.41 5.12
418 419 3.740631 ATTAAAGGGGGATCGTACGTC 57.259 47.619 16.05 11.73 0.00 4.34
419 420 4.218312 ACTATTAAAGGGGGATCGTACGT 58.782 43.478 16.05 2.33 0.00 3.57
420 421 4.861102 ACTATTAAAGGGGGATCGTACG 57.139 45.455 9.53 9.53 0.00 3.67
421 422 6.944862 TCTCTACTATTAAAGGGGGATCGTAC 59.055 42.308 0.00 0.00 0.00 3.67
422 423 7.095183 TCTCTACTATTAAAGGGGGATCGTA 57.905 40.000 0.00 0.00 0.00 3.43
423 424 5.961897 TCTCTACTATTAAAGGGGGATCGT 58.038 41.667 0.00 0.00 0.00 3.73
424 425 7.483580 AATCTCTACTATTAAAGGGGGATCG 57.516 40.000 0.00 0.00 0.00 3.69
425 426 7.548967 CGAATCTCTACTATTAAAGGGGGATC 58.451 42.308 0.00 0.00 0.00 3.36
426 427 6.070710 GCGAATCTCTACTATTAAAGGGGGAT 60.071 42.308 0.00 0.00 0.00 3.85
427 428 5.245526 GCGAATCTCTACTATTAAAGGGGGA 59.754 44.000 0.00 0.00 0.00 4.81
428 429 5.480205 GCGAATCTCTACTATTAAAGGGGG 58.520 45.833 0.00 0.00 0.00 5.40
429 430 5.480205 GGCGAATCTCTACTATTAAAGGGG 58.520 45.833 0.00 0.00 0.00 4.79
430 431 5.011738 TGGGCGAATCTCTACTATTAAAGGG 59.988 44.000 0.00 0.00 0.00 3.95
431 432 6.097915 TGGGCGAATCTCTACTATTAAAGG 57.902 41.667 0.00 0.00 0.00 3.11
432 433 9.307121 CATATGGGCGAATCTCTACTATTAAAG 57.693 37.037 0.00 0.00 0.00 1.85
433 434 8.258007 CCATATGGGCGAATCTCTACTATTAAA 58.742 37.037 14.52 0.00 0.00 1.52
434 435 7.399191 ACCATATGGGCGAATCTCTACTATTAA 59.601 37.037 25.55 0.00 42.05 1.40
435 436 6.895756 ACCATATGGGCGAATCTCTACTATTA 59.104 38.462 25.55 0.00 42.05 0.98
436 437 5.721960 ACCATATGGGCGAATCTCTACTATT 59.278 40.000 25.55 0.00 42.05 1.73
437 438 5.127845 CACCATATGGGCGAATCTCTACTAT 59.872 44.000 25.55 0.00 42.05 2.12
438 439 4.462834 CACCATATGGGCGAATCTCTACTA 59.537 45.833 25.55 0.00 42.05 1.82
439 440 3.259374 CACCATATGGGCGAATCTCTACT 59.741 47.826 25.55 0.00 42.05 2.57
440 441 3.589988 CACCATATGGGCGAATCTCTAC 58.410 50.000 25.55 0.00 42.05 2.59
441 442 2.028112 GCACCATATGGGCGAATCTCTA 60.028 50.000 25.55 0.00 42.05 2.43
442 443 1.271054 GCACCATATGGGCGAATCTCT 60.271 52.381 25.55 0.00 42.05 3.10
443 444 1.160137 GCACCATATGGGCGAATCTC 58.840 55.000 25.55 2.03 42.05 2.75
444 445 3.329300 GCACCATATGGGCGAATCT 57.671 52.632 25.55 0.00 42.05 2.40
452 453 1.821216 GGATAACCCGCACCATATGG 58.179 55.000 20.68 20.68 42.17 2.74
464 465 3.118992 AGTCTTAAACGTCCGGGATAACC 60.119 47.826 0.00 0.00 0.00 2.85
465 466 4.115401 AGTCTTAAACGTCCGGGATAAC 57.885 45.455 0.00 0.00 0.00 1.89
466 467 4.021192 ACAAGTCTTAAACGTCCGGGATAA 60.021 41.667 0.00 0.00 0.00 1.75
467 468 3.511146 ACAAGTCTTAAACGTCCGGGATA 59.489 43.478 0.00 0.00 0.00 2.59
468 469 2.301009 ACAAGTCTTAAACGTCCGGGAT 59.699 45.455 0.00 0.00 0.00 3.85
469 470 1.688197 ACAAGTCTTAAACGTCCGGGA 59.312 47.619 0.00 0.00 0.00 5.14
470 471 2.159327 ACAAGTCTTAAACGTCCGGG 57.841 50.000 0.00 0.00 0.00 5.73
471 472 3.556775 TCAAACAAGTCTTAAACGTCCGG 59.443 43.478 0.00 0.00 0.00 5.14
472 473 4.782252 TCAAACAAGTCTTAAACGTCCG 57.218 40.909 0.00 0.00 0.00 4.79
473 474 4.968181 GCTTCAAACAAGTCTTAAACGTCC 59.032 41.667 0.00 0.00 0.00 4.79
474 475 4.664851 CGCTTCAAACAAGTCTTAAACGTC 59.335 41.667 0.00 0.00 0.00 4.34
475 476 4.584394 CGCTTCAAACAAGTCTTAAACGT 58.416 39.130 0.00 0.00 0.00 3.99
476 477 3.417645 GCGCTTCAAACAAGTCTTAAACG 59.582 43.478 0.00 0.00 0.00 3.60
477 478 3.729217 GGCGCTTCAAACAAGTCTTAAAC 59.271 43.478 7.64 0.00 0.00 2.01
478 479 3.243267 GGGCGCTTCAAACAAGTCTTAAA 60.243 43.478 7.64 0.00 0.00 1.52
479 480 2.292292 GGGCGCTTCAAACAAGTCTTAA 59.708 45.455 7.64 0.00 0.00 1.85
480 481 1.877443 GGGCGCTTCAAACAAGTCTTA 59.123 47.619 7.64 0.00 0.00 2.10
481 482 0.668535 GGGCGCTTCAAACAAGTCTT 59.331 50.000 7.64 0.00 0.00 3.01
482 483 1.507141 CGGGCGCTTCAAACAAGTCT 61.507 55.000 7.64 0.00 0.00 3.24
483 484 1.082104 CGGGCGCTTCAAACAAGTC 60.082 57.895 7.64 0.00 0.00 3.01
484 485 2.551912 CCGGGCGCTTCAAACAAGT 61.552 57.895 7.64 0.00 0.00 3.16
485 486 2.255252 CCGGGCGCTTCAAACAAG 59.745 61.111 7.64 0.00 0.00 3.16
486 487 2.203224 TCCGGGCGCTTCAAACAA 60.203 55.556 7.64 0.00 0.00 2.83
487 488 2.975799 GTCCGGGCGCTTCAAACA 60.976 61.111 7.64 0.00 0.00 2.83
488 489 1.862602 AATGTCCGGGCGCTTCAAAC 61.863 55.000 7.64 0.16 0.00 2.93
489 490 1.175983 AAATGTCCGGGCGCTTCAAA 61.176 50.000 7.64 0.00 0.00 2.69
490 491 1.175983 AAAATGTCCGGGCGCTTCAA 61.176 50.000 7.64 0.00 0.00 2.69
491 492 1.582610 GAAAATGTCCGGGCGCTTCA 61.583 55.000 7.64 0.00 0.00 3.02
492 493 1.136774 GAAAATGTCCGGGCGCTTC 59.863 57.895 7.64 0.00 0.00 3.86
493 494 0.893727 AAGAAAATGTCCGGGCGCTT 60.894 50.000 7.64 0.00 0.00 4.68
494 495 1.303317 AAGAAAATGTCCGGGCGCT 60.303 52.632 7.64 0.00 0.00 5.92
495 496 1.154035 CAAGAAAATGTCCGGGCGC 60.154 57.895 0.00 0.00 0.00 6.53
496 497 1.094785 ATCAAGAAAATGTCCGGGCG 58.905 50.000 0.00 0.00 0.00 6.13
497 498 2.417243 CCAATCAAGAAAATGTCCGGGC 60.417 50.000 0.00 0.00 0.00 6.13
498 499 2.825532 ACCAATCAAGAAAATGTCCGGG 59.174 45.455 0.00 0.00 0.00 5.73
499 500 3.505680 TCACCAATCAAGAAAATGTCCGG 59.494 43.478 0.00 0.00 0.00 5.14
500 501 4.475944 GTCACCAATCAAGAAAATGTCCG 58.524 43.478 0.00 0.00 0.00 4.79
501 502 4.280677 TGGTCACCAATCAAGAAAATGTCC 59.719 41.667 0.00 0.00 0.00 4.02
502 503 5.452078 TGGTCACCAATCAAGAAAATGTC 57.548 39.130 0.00 0.00 0.00 3.06
503 504 4.281688 CCTGGTCACCAATCAAGAAAATGT 59.718 41.667 0.00 0.00 30.80 2.71
504 505 4.813027 CCTGGTCACCAATCAAGAAAATG 58.187 43.478 0.00 0.00 30.80 2.32
505 506 3.259123 GCCTGGTCACCAATCAAGAAAAT 59.741 43.478 0.00 0.00 30.80 1.82
506 507 2.627699 GCCTGGTCACCAATCAAGAAAA 59.372 45.455 0.00 0.00 30.80 2.29
507 508 2.238521 GCCTGGTCACCAATCAAGAAA 58.761 47.619 0.00 0.00 30.80 2.52
508 509 1.547675 GGCCTGGTCACCAATCAAGAA 60.548 52.381 0.00 0.00 30.80 2.52
509 510 0.038166 GGCCTGGTCACCAATCAAGA 59.962 55.000 0.00 0.00 30.80 3.02
510 511 1.308069 CGGCCTGGTCACCAATCAAG 61.308 60.000 0.00 0.00 30.80 3.02
511 512 1.303236 CGGCCTGGTCACCAATCAA 60.303 57.895 0.00 0.00 30.80 2.57
512 513 2.350895 CGGCCTGGTCACCAATCA 59.649 61.111 0.00 0.00 30.80 2.57
513 514 1.745489 GACGGCCTGGTCACCAATC 60.745 63.158 0.00 0.00 36.91 2.67
514 515 0.907704 TAGACGGCCTGGTCACCAAT 60.908 55.000 12.61 0.00 39.42 3.16
515 516 0.907704 ATAGACGGCCTGGTCACCAA 60.908 55.000 12.61 0.00 39.42 3.67
516 517 1.305802 ATAGACGGCCTGGTCACCA 60.306 57.895 12.61 0.00 39.42 4.17
517 518 1.144057 CATAGACGGCCTGGTCACC 59.856 63.158 12.61 0.00 39.42 4.02
518 519 0.103208 CTCATAGACGGCCTGGTCAC 59.897 60.000 12.61 0.00 39.42 3.67
519 520 1.043116 CCTCATAGACGGCCTGGTCA 61.043 60.000 12.61 0.66 39.42 4.02
520 521 1.742768 CCTCATAGACGGCCTGGTC 59.257 63.158 0.00 1.11 37.19 4.02
521 522 1.762460 CCCTCATAGACGGCCTGGT 60.762 63.158 0.00 0.00 0.00 4.00
522 523 2.511452 CCCCTCATAGACGGCCTGG 61.511 68.421 0.00 0.00 0.00 4.45
523 524 2.511452 CCCCCTCATAGACGGCCTG 61.511 68.421 0.00 0.00 0.00 4.85
524 525 2.122813 CCCCCTCATAGACGGCCT 60.123 66.667 0.00 0.00 0.00 5.19
525 526 1.632965 AAACCCCCTCATAGACGGCC 61.633 60.000 0.00 0.00 0.00 6.13
526 527 0.463833 CAAACCCCCTCATAGACGGC 60.464 60.000 0.00 0.00 0.00 5.68
527 528 1.139058 CTCAAACCCCCTCATAGACGG 59.861 57.143 0.00 0.00 0.00 4.79
528 529 1.831736 ACTCAAACCCCCTCATAGACG 59.168 52.381 0.00 0.00 0.00 4.18
529 530 2.159085 CGACTCAAACCCCCTCATAGAC 60.159 54.545 0.00 0.00 0.00 2.59
530 531 2.108168 CGACTCAAACCCCCTCATAGA 58.892 52.381 0.00 0.00 0.00 1.98
531 532 2.101582 CTCGACTCAAACCCCCTCATAG 59.898 54.545 0.00 0.00 0.00 2.23
532 533 2.108168 CTCGACTCAAACCCCCTCATA 58.892 52.381 0.00 0.00 0.00 2.15
533 534 0.905357 CTCGACTCAAACCCCCTCAT 59.095 55.000 0.00 0.00 0.00 2.90
534 535 1.827399 GCTCGACTCAAACCCCCTCA 61.827 60.000 0.00 0.00 0.00 3.86
535 536 1.079057 GCTCGACTCAAACCCCCTC 60.079 63.158 0.00 0.00 0.00 4.30
536 537 2.943978 CGCTCGACTCAAACCCCCT 61.944 63.158 0.00 0.00 0.00 4.79
537 538 2.240162 ATCGCTCGACTCAAACCCCC 62.240 60.000 0.00 0.00 0.00 5.40
538 539 0.391263 AATCGCTCGACTCAAACCCC 60.391 55.000 0.00 0.00 0.00 4.95
539 540 0.721718 CAATCGCTCGACTCAAACCC 59.278 55.000 0.00 0.00 0.00 4.11
540 541 1.710013 TCAATCGCTCGACTCAAACC 58.290 50.000 0.00 0.00 0.00 3.27
541 542 2.987149 TCTTCAATCGCTCGACTCAAAC 59.013 45.455 0.00 0.00 0.00 2.93
542 543 3.297830 TCTTCAATCGCTCGACTCAAA 57.702 42.857 0.00 0.00 0.00 2.69
543 544 3.182182 CATCTTCAATCGCTCGACTCAA 58.818 45.455 0.00 0.00 0.00 3.02
544 545 2.802256 CATCTTCAATCGCTCGACTCA 58.198 47.619 0.00 0.00 0.00 3.41
545 546 1.520590 GCATCTTCAATCGCTCGACTC 59.479 52.381 0.00 0.00 0.00 3.36
546 547 1.135915 AGCATCTTCAATCGCTCGACT 59.864 47.619 0.00 0.00 0.00 4.18
547 548 1.520590 GAGCATCTTCAATCGCTCGAC 59.479 52.381 0.00 0.00 41.26 4.20
548 549 1.845266 GAGCATCTTCAATCGCTCGA 58.155 50.000 0.00 0.00 41.26 4.04
561 562 4.255301 GGGATCAATCTCATCAGAGCATC 58.745 47.826 0.00 0.00 41.81 3.91
562 563 3.009253 GGGGATCAATCTCATCAGAGCAT 59.991 47.826 0.00 0.00 41.81 3.79
563 564 2.371179 GGGGATCAATCTCATCAGAGCA 59.629 50.000 0.00 0.00 41.81 4.26
564 565 2.638855 AGGGGATCAATCTCATCAGAGC 59.361 50.000 0.00 0.00 41.81 4.09
565 566 3.008157 CCAGGGGATCAATCTCATCAGAG 59.992 52.174 0.00 0.00 43.48 3.35
566 567 2.977580 CCAGGGGATCAATCTCATCAGA 59.022 50.000 0.00 0.00 0.00 3.27
567 568 2.977580 TCCAGGGGATCAATCTCATCAG 59.022 50.000 0.00 0.00 0.00 2.90
568 569 2.707791 GTCCAGGGGATCAATCTCATCA 59.292 50.000 0.00 0.00 32.73 3.07
569 570 2.289320 CGTCCAGGGGATCAATCTCATC 60.289 54.545 0.00 0.00 32.73 2.92
570 571 1.696336 CGTCCAGGGGATCAATCTCAT 59.304 52.381 0.00 0.00 32.73 2.90
571 572 1.123077 CGTCCAGGGGATCAATCTCA 58.877 55.000 0.00 0.00 32.73 3.27
572 573 0.250081 GCGTCCAGGGGATCAATCTC 60.250 60.000 0.00 0.00 32.73 2.75
573 574 1.700042 GGCGTCCAGGGGATCAATCT 61.700 60.000 0.00 0.00 32.73 2.40
574 575 1.227973 GGCGTCCAGGGGATCAATC 60.228 63.158 0.00 0.00 32.73 2.67
575 576 1.355718 ATGGCGTCCAGGGGATCAAT 61.356 55.000 4.90 0.00 36.75 2.57
576 577 1.983119 GATGGCGTCCAGGGGATCAA 61.983 60.000 4.90 0.00 36.75 2.57
577 578 2.366837 ATGGCGTCCAGGGGATCA 60.367 61.111 4.90 0.00 36.75 2.92
578 579 1.772819 ATGATGGCGTCCAGGGGATC 61.773 60.000 3.88 0.00 36.75 3.36
579 580 1.771746 ATGATGGCGTCCAGGGGAT 60.772 57.895 3.88 0.00 36.75 3.85
580 581 2.366837 ATGATGGCGTCCAGGGGA 60.367 61.111 3.88 0.00 36.75 4.81
581 582 2.111878 GATGATGGCGTCCAGGGG 59.888 66.667 3.88 0.00 36.75 4.79
582 583 1.227764 CAGATGATGGCGTCCAGGG 60.228 63.158 3.88 0.00 36.75 4.45
583 584 0.178767 TTCAGATGATGGCGTCCAGG 59.821 55.000 3.88 0.00 36.75 4.45
584 585 2.251409 ATTCAGATGATGGCGTCCAG 57.749 50.000 3.88 0.00 36.75 3.86
585 586 2.171237 AGAATTCAGATGATGGCGTCCA 59.829 45.455 8.44 1.01 38.19 4.02
586 587 2.547211 CAGAATTCAGATGATGGCGTCC 59.453 50.000 8.44 0.00 0.00 4.79
587 588 3.461061 TCAGAATTCAGATGATGGCGTC 58.539 45.455 8.44 0.00 0.00 5.19
588 589 3.548745 TCAGAATTCAGATGATGGCGT 57.451 42.857 8.44 0.00 0.00 5.68
589 590 3.123116 CGATCAGAATTCAGATGATGGCG 59.877 47.826 17.14 10.40 33.90 5.69
590 591 4.152045 GTCGATCAGAATTCAGATGATGGC 59.848 45.833 17.14 5.80 33.90 4.40
591 592 5.539979 AGTCGATCAGAATTCAGATGATGG 58.460 41.667 17.14 13.18 33.90 3.51
592 593 6.448852 AGAGTCGATCAGAATTCAGATGATG 58.551 40.000 17.14 7.74 33.90 3.07
593 594 6.491062 AGAGAGTCGATCAGAATTCAGATGAT 59.509 38.462 17.14 12.36 36.40 2.45
594 595 5.827267 AGAGAGTCGATCAGAATTCAGATGA 59.173 40.000 17.14 11.82 0.00 2.92
595 596 5.916320 CAGAGAGTCGATCAGAATTCAGATG 59.084 44.000 17.14 10.00 0.00 2.90
596 597 5.507817 GCAGAGAGTCGATCAGAATTCAGAT 60.508 44.000 12.70 12.70 0.00 2.90
597 598 4.202000 GCAGAGAGTCGATCAGAATTCAGA 60.202 45.833 8.44 5.51 0.00 3.27
598 599 4.043750 GCAGAGAGTCGATCAGAATTCAG 58.956 47.826 8.44 0.00 0.00 3.02
599 600 3.181482 GGCAGAGAGTCGATCAGAATTCA 60.181 47.826 8.44 0.00 0.00 2.57
600 601 3.068024 AGGCAGAGAGTCGATCAGAATTC 59.932 47.826 0.00 0.00 0.00 2.17
601 602 3.030291 AGGCAGAGAGTCGATCAGAATT 58.970 45.455 0.00 0.00 0.00 2.17
602 603 2.361757 CAGGCAGAGAGTCGATCAGAAT 59.638 50.000 0.00 0.00 0.00 2.40
603 604 1.747924 CAGGCAGAGAGTCGATCAGAA 59.252 52.381 0.00 0.00 0.00 3.02
604 605 1.387539 CAGGCAGAGAGTCGATCAGA 58.612 55.000 0.00 0.00 0.00 3.27
605 606 0.385029 CCAGGCAGAGAGTCGATCAG 59.615 60.000 0.00 0.00 0.00 2.90
606 607 0.034089 TCCAGGCAGAGAGTCGATCA 60.034 55.000 0.00 0.00 0.00 2.92
607 608 1.269448 GATCCAGGCAGAGAGTCGATC 59.731 57.143 0.00 0.00 0.00 3.69
608 609 1.327303 GATCCAGGCAGAGAGTCGAT 58.673 55.000 0.00 0.00 0.00 3.59
609 610 0.034089 TGATCCAGGCAGAGAGTCGA 60.034 55.000 0.00 0.00 0.00 4.20
610 611 0.102120 GTGATCCAGGCAGAGAGTCG 59.898 60.000 0.00 0.00 0.00 4.18
611 612 0.463620 GGTGATCCAGGCAGAGAGTC 59.536 60.000 0.00 0.00 0.00 3.36
612 613 0.252421 TGGTGATCCAGGCAGAGAGT 60.252 55.000 0.00 0.00 39.03 3.24
613 614 0.177604 GTGGTGATCCAGGCAGAGAG 59.822 60.000 0.00 0.00 45.24 3.20
614 615 0.252421 AGTGGTGATCCAGGCAGAGA 60.252 55.000 0.00 0.00 45.24 3.10
615 616 1.489481 TAGTGGTGATCCAGGCAGAG 58.511 55.000 0.00 0.00 45.24 3.35
616 617 1.555075 GTTAGTGGTGATCCAGGCAGA 59.445 52.381 0.00 0.00 45.24 4.26
617 618 1.556911 AGTTAGTGGTGATCCAGGCAG 59.443 52.381 0.00 0.00 45.24 4.85
618 619 1.278985 CAGTTAGTGGTGATCCAGGCA 59.721 52.381 0.00 0.00 45.24 4.75
619 620 2.014068 GCAGTTAGTGGTGATCCAGGC 61.014 57.143 0.00 0.00 45.24 4.85
620 621 1.278985 TGCAGTTAGTGGTGATCCAGG 59.721 52.381 0.00 0.00 45.24 4.45
621 622 2.768253 TGCAGTTAGTGGTGATCCAG 57.232 50.000 0.00 0.00 45.24 3.86
622 623 2.940971 GCATGCAGTTAGTGGTGATCCA 60.941 50.000 14.21 0.00 42.05 3.41
623 624 1.672881 GCATGCAGTTAGTGGTGATCC 59.327 52.381 14.21 0.00 0.00 3.36
624 625 1.672881 GGCATGCAGTTAGTGGTGATC 59.327 52.381 21.36 0.00 0.00 2.92
625 626 1.755179 GGCATGCAGTTAGTGGTGAT 58.245 50.000 21.36 0.00 0.00 3.06
664 665 6.851609 TCATGTATTTGTTTGCATACTGGAC 58.148 36.000 8.78 2.89 0.00 4.02
672 676 5.527951 GTCCAGTTCATGTATTTGTTTGCA 58.472 37.500 0.00 0.00 0.00 4.08
859 867 0.173481 GTGTGATACGAGGCTGCTCA 59.827 55.000 0.00 0.00 0.00 4.26
860 868 0.173481 TGTGTGATACGAGGCTGCTC 59.827 55.000 0.00 0.00 0.00 4.26
864 872 4.021894 GGAGATTATGTGTGATACGAGGCT 60.022 45.833 0.00 0.00 0.00 4.58
865 873 4.238514 GGAGATTATGTGTGATACGAGGC 58.761 47.826 0.00 0.00 0.00 4.70
866 874 5.453567 TGGAGATTATGTGTGATACGAGG 57.546 43.478 0.00 0.00 0.00 4.63
867 875 6.918626 AGATGGAGATTATGTGTGATACGAG 58.081 40.000 0.00 0.00 0.00 4.18
868 876 6.901081 AGATGGAGATTATGTGTGATACGA 57.099 37.500 0.00 0.00 0.00 3.43
993 1029 2.059190 TGCCATGGCCATTTGCGAT 61.059 52.632 33.44 0.00 42.61 4.58
1258 2219 2.955881 CGGGGAGGTGGAGGTTGAC 61.956 68.421 0.00 0.00 0.00 3.18
1378 2348 4.908156 CGCTCAAAAATTCAGACAAGACAG 59.092 41.667 0.00 0.00 0.00 3.51
1429 2400 5.459762 AGTGAAAACAAAAGATTGCGACATG 59.540 36.000 0.00 0.00 40.34 3.21
1489 2461 7.096640 CCACGATACAAAACACAACTTCATTTC 60.097 37.037 0.00 0.00 0.00 2.17
1515 2497 2.289010 CCAAGTGCCAAAATCTCAACCC 60.289 50.000 0.00 0.00 0.00 4.11
1602 2591 6.071616 CGGGGTCATCCTCATTTTCTTAAAAA 60.072 38.462 0.00 0.00 35.88 1.94
1603 2592 5.417580 CGGGGTCATCCTCATTTTCTTAAAA 59.582 40.000 0.00 0.00 32.73 1.52
1604 2593 4.947388 CGGGGTCATCCTCATTTTCTTAAA 59.053 41.667 0.00 0.00 32.73 1.52
1605 2594 4.523083 CGGGGTCATCCTCATTTTCTTAA 58.477 43.478 0.00 0.00 32.73 1.85
1606 2595 3.118038 CCGGGGTCATCCTCATTTTCTTA 60.118 47.826 0.00 0.00 32.73 2.10
1607 2596 2.357154 CCGGGGTCATCCTCATTTTCTT 60.357 50.000 0.00 0.00 32.73 2.52
1614 2603 4.414956 AGGCCGGGGTCATCCTCA 62.415 66.667 2.18 0.00 32.73 3.86
1699 2689 4.338879 AGTCGGTGGCTTTAGTCTTACTA 58.661 43.478 0.00 0.00 0.00 1.82
1763 2753 6.544928 TGATATTAGTCCAGACTTTCAGCA 57.455 37.500 5.49 0.00 42.54 4.41
1777 2767 6.591834 GGCTGCGAGATATGTTTGATATTAGT 59.408 38.462 0.00 0.00 0.00 2.24
1791 2782 2.235155 TGTTAGGTTTGGCTGCGAGATA 59.765 45.455 0.00 0.00 0.00 1.98
1793 2784 0.394938 TGTTAGGTTTGGCTGCGAGA 59.605 50.000 0.00 0.00 0.00 4.04
1943 2935 4.497300 GCAAGGTTGATGCAACAATACAT 58.503 39.130 12.87 0.00 45.11 2.29
1951 2943 0.469705 ACTGGGCAAGGTTGATGCAA 60.470 50.000 0.00 0.00 45.60 4.08
2114 3106 1.613630 GGCTGGAGGGGACAAGAGA 60.614 63.158 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.