Multiple sequence alignment - TraesCS1A01G329500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G329500 chr1A 100.000 3734 0 0 1 3734 518471562 518475295 0.000000e+00 6896.0
1 TraesCS1A01G329500 chr1A 87.209 258 21 3 2189 2446 518091740 518091985 2.200000e-72 283.0
2 TraesCS1A01G329500 chr1A 80.259 309 39 11 225 513 575401760 575401454 2.920000e-51 213.0
3 TraesCS1A01G329500 chr1A 91.803 61 4 1 870 930 518623189 518623248 2.390000e-12 84.2
4 TraesCS1A01G329500 chr1D 94.207 2365 105 7 344 2689 422673109 422675460 0.000000e+00 3579.0
5 TraesCS1A01G329500 chr1D 87.224 814 62 17 752 1533 422597713 422598516 0.000000e+00 889.0
6 TraesCS1A01G329500 chr1D 87.633 469 35 8 2763 3228 422675516 422675964 1.190000e-144 523.0
7 TraesCS1A01G329500 chr1B 90.682 2522 121 36 748 3205 571431829 571434300 0.000000e+00 3251.0
8 TraesCS1A01G329500 chr1B 83.912 317 40 5 447 754 571431340 571431654 3.650000e-75 292.0
9 TraesCS1A01G329500 chr1B 81.592 201 27 9 319 509 192702314 192702514 1.390000e-34 158.0
10 TraesCS1A01G329500 chr7D 92.717 508 25 5 3236 3734 366746700 366746196 0.000000e+00 723.0
11 TraesCS1A01G329500 chr7D 91.892 518 28 7 3228 3734 400227282 400227796 0.000000e+00 712.0
12 TraesCS1A01G329500 chr7D 83.824 68 7 1 606 669 183027639 183027572 1.120000e-05 62.1
13 TraesCS1A01G329500 chr6D 91.969 523 23 8 3225 3734 291663678 291663162 0.000000e+00 715.0
14 TraesCS1A01G329500 chr6D 82.807 285 33 9 182 456 459756894 459756616 1.340000e-59 241.0
15 TraesCS1A01G329500 chr4B 91.860 516 30 6 3228 3734 223325497 223324985 0.000000e+00 710.0
16 TraesCS1A01G329500 chr4B 91.892 518 27 6 3228 3734 223327798 223327285 0.000000e+00 710.0
17 TraesCS1A01G329500 chr4B 91.699 518 28 6 3228 3734 223330150 223329637 0.000000e+00 704.0
18 TraesCS1A01G329500 chr4D 91.797 512 21 5 3233 3734 283070064 283070564 0.000000e+00 693.0
19 TraesCS1A01G329500 chr3B 90.154 518 38 6 3228 3734 221174265 221173750 0.000000e+00 662.0
20 TraesCS1A01G329500 chr3D 90.220 501 35 5 3244 3734 586538713 586538217 3.140000e-180 641.0
21 TraesCS1A01G329500 chr3D 77.155 232 38 12 228 448 19531250 19531477 1.820000e-23 121.0
22 TraesCS1A01G329500 chrUn 75.319 1175 261 20 1084 2242 289483420 289484581 1.530000e-148 536.0
23 TraesCS1A01G329500 chrUn 75.319 1175 261 20 1084 2242 296679667 296680828 1.530000e-148 536.0
24 TraesCS1A01G329500 chrUn 75.350 929 208 15 1084 2003 306174132 306173216 9.580000e-116 427.0
25 TraesCS1A01G329500 chrUn 75.350 929 208 15 1084 2003 392812864 392813780 9.580000e-116 427.0
26 TraesCS1A01G329500 chr7B 85.962 520 51 14 3228 3734 553197853 553198363 1.530000e-148 536.0
27 TraesCS1A01G329500 chr6B 80.903 288 41 11 226 509 720557005 720556728 8.120000e-52 215.0
28 TraesCS1A01G329500 chr2A 76.508 315 45 19 168 462 732996023 732995718 1.080000e-30 145.0
29 TraesCS1A01G329500 chr2A 79.188 197 28 10 336 523 48852542 48852734 1.410000e-24 124.0
30 TraesCS1A01G329500 chr5A 76.852 216 38 5 236 448 77785037 77785243 1.100000e-20 111.0
31 TraesCS1A01G329500 chr3A 82.576 132 15 5 623 750 691624698 691624825 3.940000e-20 110.0
32 TraesCS1A01G329500 chr5D 80.916 131 18 3 617 743 49301651 49301778 3.070000e-16 97.1
33 TraesCS1A01G329500 chr6A 86.747 83 11 0 371 453 595579699 595579617 3.970000e-15 93.5
34 TraesCS1A01G329500 chr6A 86.567 67 3 3 623 685 451519536 451519600 6.690000e-08 69.4
35 TraesCS1A01G329500 chr2D 75.510 196 28 9 332 510 576856774 576856966 1.110000e-10 78.7
36 TraesCS1A01G329500 chr2D 89.130 46 5 0 611 656 29539549 29539594 1.450000e-04 58.4
37 TraesCS1A01G329500 chr5B 88.889 45 1 1 629 669 591519216 591519172 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G329500 chr1A 518471562 518475295 3733 False 6896.0 6896 100.000 1 3734 1 chr1A.!!$F2 3733
1 TraesCS1A01G329500 chr1D 422673109 422675964 2855 False 2051.0 3579 90.920 344 3228 2 chr1D.!!$F2 2884
2 TraesCS1A01G329500 chr1D 422597713 422598516 803 False 889.0 889 87.224 752 1533 1 chr1D.!!$F1 781
3 TraesCS1A01G329500 chr1B 571431340 571434300 2960 False 1771.5 3251 87.297 447 3205 2 chr1B.!!$F2 2758
4 TraesCS1A01G329500 chr7D 366746196 366746700 504 True 723.0 723 92.717 3236 3734 1 chr7D.!!$R2 498
5 TraesCS1A01G329500 chr7D 400227282 400227796 514 False 712.0 712 91.892 3228 3734 1 chr7D.!!$F1 506
6 TraesCS1A01G329500 chr6D 291663162 291663678 516 True 715.0 715 91.969 3225 3734 1 chr6D.!!$R1 509
7 TraesCS1A01G329500 chr4B 223324985 223330150 5165 True 708.0 710 91.817 3228 3734 3 chr4B.!!$R1 506
8 TraesCS1A01G329500 chr4D 283070064 283070564 500 False 693.0 693 91.797 3233 3734 1 chr4D.!!$F1 501
9 TraesCS1A01G329500 chr3B 221173750 221174265 515 True 662.0 662 90.154 3228 3734 1 chr3B.!!$R1 506
10 TraesCS1A01G329500 chrUn 289483420 289484581 1161 False 536.0 536 75.319 1084 2242 1 chrUn.!!$F1 1158
11 TraesCS1A01G329500 chrUn 296679667 296680828 1161 False 536.0 536 75.319 1084 2242 1 chrUn.!!$F2 1158
12 TraesCS1A01G329500 chrUn 306173216 306174132 916 True 427.0 427 75.350 1084 2003 1 chrUn.!!$R1 919
13 TraesCS1A01G329500 chrUn 392812864 392813780 916 False 427.0 427 75.350 1084 2003 1 chrUn.!!$F3 919
14 TraesCS1A01G329500 chr7B 553197853 553198363 510 False 536.0 536 85.962 3228 3734 1 chr7B.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.107312 CATGAAGGGGCTGAGAGGTG 60.107 60.0 0.00 0.0 0.0 4.00 F
979 1196 0.247736 GGCACTCCAGTCGATCAAGT 59.752 55.0 0.00 0.0 0.0 3.16 F
2692 2937 0.364515 CTACGCGTTGGCTTTCGTAC 59.635 55.0 20.78 0.0 36.5 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1821 1.265635 CATCCTCTCGTCGCCTCTTAG 59.734 57.143 0.00 0.0 0.00 2.18 R
2710 2970 0.178767 TCCATGGACAGGAAGATGCG 59.821 55.000 11.44 0.0 30.71 4.73 R
3596 3892 8.898761 TCTTGCTTTCAAAAAGTATTCACAGTA 58.101 29.630 1.78 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.508840 CGGACAAATGCGGGAGGC 61.509 66.667 0.00 0.00 43.96 4.70
18 19 2.044946 GGACAAATGCGGGAGGCT 60.045 61.111 0.00 0.00 44.05 4.58
19 20 1.678970 GGACAAATGCGGGAGGCTT 60.679 57.895 0.00 0.00 44.05 4.35
20 21 1.250840 GGACAAATGCGGGAGGCTTT 61.251 55.000 0.00 0.00 44.05 3.51
21 22 0.603065 GACAAATGCGGGAGGCTTTT 59.397 50.000 0.00 0.00 46.40 2.27
22 23 1.000843 GACAAATGCGGGAGGCTTTTT 59.999 47.619 0.00 0.00 43.99 1.94
23 24 1.270252 ACAAATGCGGGAGGCTTTTTG 60.270 47.619 0.00 10.77 43.99 2.44
24 25 1.047801 AAATGCGGGAGGCTTTTTGT 58.952 45.000 0.00 0.00 43.99 2.83
25 26 0.318120 AATGCGGGAGGCTTTTTGTG 59.682 50.000 0.00 0.00 44.05 3.33
26 27 1.535204 ATGCGGGAGGCTTTTTGTGG 61.535 55.000 0.00 0.00 44.05 4.17
27 28 2.931068 GCGGGAGGCTTTTTGTGGG 61.931 63.158 0.00 0.00 39.11 4.61
28 29 1.530655 CGGGAGGCTTTTTGTGGGT 60.531 57.895 0.00 0.00 0.00 4.51
29 30 1.112916 CGGGAGGCTTTTTGTGGGTT 61.113 55.000 0.00 0.00 0.00 4.11
30 31 0.392706 GGGAGGCTTTTTGTGGGTTG 59.607 55.000 0.00 0.00 0.00 3.77
31 32 1.119684 GGAGGCTTTTTGTGGGTTGT 58.880 50.000 0.00 0.00 0.00 3.32
32 33 1.068588 GGAGGCTTTTTGTGGGTTGTC 59.931 52.381 0.00 0.00 0.00 3.18
33 34 1.754226 GAGGCTTTTTGTGGGTTGTCA 59.246 47.619 0.00 0.00 0.00 3.58
34 35 2.365293 GAGGCTTTTTGTGGGTTGTCAT 59.635 45.455 0.00 0.00 0.00 3.06
35 36 2.771372 AGGCTTTTTGTGGGTTGTCATT 59.229 40.909 0.00 0.00 0.00 2.57
36 37 2.871633 GGCTTTTTGTGGGTTGTCATTG 59.128 45.455 0.00 0.00 0.00 2.82
37 38 3.431486 GGCTTTTTGTGGGTTGTCATTGA 60.431 43.478 0.00 0.00 0.00 2.57
38 39 4.187694 GCTTTTTGTGGGTTGTCATTGAA 58.812 39.130 0.00 0.00 0.00 2.69
39 40 4.270808 GCTTTTTGTGGGTTGTCATTGAAG 59.729 41.667 0.00 0.00 0.00 3.02
40 41 5.659463 CTTTTTGTGGGTTGTCATTGAAGA 58.341 37.500 0.00 0.00 0.00 2.87
41 42 5.867903 TTTTGTGGGTTGTCATTGAAGAT 57.132 34.783 0.00 0.00 0.00 2.40
42 43 4.852134 TTGTGGGTTGTCATTGAAGATG 57.148 40.909 0.00 0.00 0.00 2.90
43 44 2.557924 TGTGGGTTGTCATTGAAGATGC 59.442 45.455 0.00 0.00 0.00 3.91
44 45 2.094545 GTGGGTTGTCATTGAAGATGCC 60.095 50.000 0.00 0.00 0.00 4.40
45 46 1.478105 GGGTTGTCATTGAAGATGCCC 59.522 52.381 0.00 0.00 0.00 5.36
46 47 2.450476 GGTTGTCATTGAAGATGCCCT 58.550 47.619 0.00 0.00 0.00 5.19
47 48 3.620488 GGTTGTCATTGAAGATGCCCTA 58.380 45.455 0.00 0.00 0.00 3.53
48 49 4.016444 GGTTGTCATTGAAGATGCCCTAA 58.984 43.478 0.00 0.00 0.00 2.69
49 50 4.462483 GGTTGTCATTGAAGATGCCCTAAA 59.538 41.667 0.00 0.00 0.00 1.85
50 51 5.047377 GGTTGTCATTGAAGATGCCCTAAAA 60.047 40.000 0.00 0.00 0.00 1.52
51 52 5.643379 TGTCATTGAAGATGCCCTAAAAC 57.357 39.130 0.00 0.00 0.00 2.43
52 53 5.076182 TGTCATTGAAGATGCCCTAAAACA 58.924 37.500 0.00 0.00 0.00 2.83
53 54 5.538053 TGTCATTGAAGATGCCCTAAAACAA 59.462 36.000 0.00 0.00 0.00 2.83
54 55 6.095377 GTCATTGAAGATGCCCTAAAACAAG 58.905 40.000 0.00 0.00 0.00 3.16
55 56 4.519540 TTGAAGATGCCCTAAAACAAGC 57.480 40.909 0.00 0.00 0.00 4.01
56 57 3.495331 TGAAGATGCCCTAAAACAAGCA 58.505 40.909 0.00 0.00 40.00 3.91
58 59 4.082081 TGAAGATGCCCTAAAACAAGCATG 60.082 41.667 0.35 0.00 45.57 4.06
59 60 3.700538 AGATGCCCTAAAACAAGCATGA 58.299 40.909 0.00 0.00 45.57 3.07
60 61 4.088634 AGATGCCCTAAAACAAGCATGAA 58.911 39.130 0.00 0.00 45.57 2.57
61 62 4.527816 AGATGCCCTAAAACAAGCATGAAA 59.472 37.500 0.00 0.00 45.57 2.69
62 63 4.679373 TGCCCTAAAACAAGCATGAAAA 57.321 36.364 0.00 0.00 0.00 2.29
63 64 5.028549 TGCCCTAAAACAAGCATGAAAAA 57.971 34.783 0.00 0.00 0.00 1.94
96 97 6.911484 AAAAGTTCACGCAAATCGATTTAG 57.089 33.333 22.33 19.99 41.67 1.85
97 98 5.607119 AAGTTCACGCAAATCGATTTAGT 57.393 34.783 22.33 20.57 41.67 2.24
98 99 5.204673 AGTTCACGCAAATCGATTTAGTC 57.795 39.130 22.33 13.34 41.67 2.59
99 100 4.092968 AGTTCACGCAAATCGATTTAGTCC 59.907 41.667 22.33 14.03 41.67 3.85
100 101 2.933906 TCACGCAAATCGATTTAGTCCC 59.066 45.455 22.33 8.38 41.67 4.46
101 102 2.675844 CACGCAAATCGATTTAGTCCCA 59.324 45.455 22.33 0.00 41.67 4.37
102 103 2.936498 ACGCAAATCGATTTAGTCCCAG 59.064 45.455 22.33 9.96 41.67 4.45
103 104 2.286418 CGCAAATCGATTTAGTCCCAGC 60.286 50.000 22.33 17.52 41.67 4.85
104 105 2.286418 GCAAATCGATTTAGTCCCAGCG 60.286 50.000 22.33 8.60 0.00 5.18
105 106 2.240493 AATCGATTTAGTCCCAGCGG 57.760 50.000 4.39 0.00 0.00 5.52
106 107 0.393077 ATCGATTTAGTCCCAGCGGG 59.607 55.000 7.24 7.24 46.11 6.13
133 134 0.686789 AAAAACCAGCATGAAGGGGC 59.313 50.000 0.00 0.00 39.69 5.80
134 135 0.178924 AAAACCAGCATGAAGGGGCT 60.179 50.000 0.00 0.00 39.69 5.19
138 139 4.159099 AGCATGAAGGGGCTGAGA 57.841 55.556 0.00 0.00 39.30 3.27
139 140 1.913722 AGCATGAAGGGGCTGAGAG 59.086 57.895 0.00 0.00 39.30 3.20
140 141 1.153005 GCATGAAGGGGCTGAGAGG 60.153 63.158 0.00 0.00 0.00 3.69
141 142 1.919600 GCATGAAGGGGCTGAGAGGT 61.920 60.000 0.00 0.00 0.00 3.85
142 143 0.107312 CATGAAGGGGCTGAGAGGTG 60.107 60.000 0.00 0.00 0.00 4.00
143 144 0.252881 ATGAAGGGGCTGAGAGGTGA 60.253 55.000 0.00 0.00 0.00 4.02
144 145 0.906756 TGAAGGGGCTGAGAGGTGAG 60.907 60.000 0.00 0.00 0.00 3.51
145 146 1.614824 AAGGGGCTGAGAGGTGAGG 60.615 63.158 0.00 0.00 0.00 3.86
146 147 3.791586 GGGGCTGAGAGGTGAGGC 61.792 72.222 0.00 0.00 0.00 4.70
147 148 4.154347 GGGCTGAGAGGTGAGGCG 62.154 72.222 0.00 0.00 35.63 5.52
148 149 3.071206 GGCTGAGAGGTGAGGCGA 61.071 66.667 0.00 0.00 0.00 5.54
149 150 2.650116 GGCTGAGAGGTGAGGCGAA 61.650 63.158 0.00 0.00 0.00 4.70
150 151 1.293498 GCTGAGAGGTGAGGCGAAA 59.707 57.895 0.00 0.00 0.00 3.46
151 152 1.016653 GCTGAGAGGTGAGGCGAAAC 61.017 60.000 0.00 0.00 0.00 2.78
152 153 0.605589 CTGAGAGGTGAGGCGAAACT 59.394 55.000 0.00 0.00 0.00 2.66
153 154 1.819288 CTGAGAGGTGAGGCGAAACTA 59.181 52.381 0.00 0.00 0.00 2.24
154 155 2.231478 CTGAGAGGTGAGGCGAAACTAA 59.769 50.000 0.00 0.00 0.00 2.24
155 156 2.631062 TGAGAGGTGAGGCGAAACTAAA 59.369 45.455 0.00 0.00 0.00 1.85
156 157 2.994578 GAGAGGTGAGGCGAAACTAAAC 59.005 50.000 0.00 0.00 0.00 2.01
157 158 2.074576 GAGGTGAGGCGAAACTAAACC 58.925 52.381 0.00 0.00 0.00 3.27
158 159 1.418637 AGGTGAGGCGAAACTAAACCA 59.581 47.619 0.00 0.00 32.40 3.67
159 160 1.804748 GGTGAGGCGAAACTAAACCAG 59.195 52.381 0.00 0.00 31.06 4.00
160 161 2.490991 GTGAGGCGAAACTAAACCAGT 58.509 47.619 0.00 0.00 40.05 4.00
161 162 3.555586 GGTGAGGCGAAACTAAACCAGTA 60.556 47.826 0.00 0.00 36.04 2.74
162 163 4.060205 GTGAGGCGAAACTAAACCAGTAA 58.940 43.478 0.00 0.00 36.04 2.24
163 164 4.151867 GTGAGGCGAAACTAAACCAGTAAG 59.848 45.833 0.00 0.00 36.04 2.34
164 165 3.671716 AGGCGAAACTAAACCAGTAAGG 58.328 45.455 0.00 0.00 45.67 2.69
165 166 2.161012 GGCGAAACTAAACCAGTAAGGC 59.839 50.000 0.00 0.00 43.14 4.35
166 167 2.159747 GCGAAACTAAACCAGTAAGGCG 60.160 50.000 0.00 0.00 43.14 5.52
167 168 2.414138 CGAAACTAAACCAGTAAGGCGG 59.586 50.000 0.00 0.00 43.14 6.13
168 169 2.484742 AACTAAACCAGTAAGGCGGG 57.515 50.000 0.00 0.00 43.14 6.13
169 170 0.616891 ACTAAACCAGTAAGGCGGGG 59.383 55.000 0.00 0.00 43.14 5.73
170 171 0.906775 CTAAACCAGTAAGGCGGGGA 59.093 55.000 0.00 0.00 43.14 4.81
171 172 0.614812 TAAACCAGTAAGGCGGGGAC 59.385 55.000 0.00 0.00 43.14 4.46
172 173 1.420532 AAACCAGTAAGGCGGGGACA 61.421 55.000 0.00 0.00 43.14 4.02
173 174 1.205460 AACCAGTAAGGCGGGGACAT 61.205 55.000 0.00 0.00 43.14 3.06
174 175 1.153168 CCAGTAAGGCGGGGACATG 60.153 63.158 0.00 0.00 0.00 3.21
175 176 1.153168 CAGTAAGGCGGGGACATGG 60.153 63.158 0.00 0.00 0.00 3.66
176 177 2.516225 GTAAGGCGGGGACATGGC 60.516 66.667 0.00 0.00 0.00 4.40
177 178 3.012119 TAAGGCGGGGACATGGCA 61.012 61.111 0.00 0.00 33.50 4.92
178 179 2.382770 TAAGGCGGGGACATGGCAT 61.383 57.895 0.00 0.00 33.50 4.40
179 180 1.932156 TAAGGCGGGGACATGGCATT 61.932 55.000 0.00 0.00 34.78 3.56
180 181 2.759560 GGCGGGGACATGGCATTT 60.760 61.111 0.00 0.00 0.00 2.32
181 182 2.785425 GGCGGGGACATGGCATTTC 61.785 63.158 0.00 5.05 0.00 2.17
182 183 1.754234 GCGGGGACATGGCATTTCT 60.754 57.895 12.95 0.00 0.00 2.52
183 184 2.008268 GCGGGGACATGGCATTTCTG 62.008 60.000 12.95 0.00 0.00 3.02
184 185 0.394216 CGGGGACATGGCATTTCTGA 60.394 55.000 12.95 0.00 0.00 3.27
185 186 1.106285 GGGGACATGGCATTTCTGAC 58.894 55.000 12.95 4.71 0.00 3.51
186 187 1.106285 GGGACATGGCATTTCTGACC 58.894 55.000 12.95 6.23 0.00 4.02
187 188 1.341383 GGGACATGGCATTTCTGACCT 60.341 52.381 12.95 0.00 0.00 3.85
188 189 2.019984 GGACATGGCATTTCTGACCTC 58.980 52.381 12.95 0.00 0.00 3.85
189 190 2.618816 GGACATGGCATTTCTGACCTCA 60.619 50.000 12.95 0.00 0.00 3.86
190 191 3.084039 GACATGGCATTTCTGACCTCAA 58.916 45.455 6.38 0.00 0.00 3.02
191 192 3.087031 ACATGGCATTTCTGACCTCAAG 58.913 45.455 0.00 0.00 0.00 3.02
192 193 1.538047 TGGCATTTCTGACCTCAAGC 58.462 50.000 0.00 0.00 0.00 4.01
193 194 1.074405 TGGCATTTCTGACCTCAAGCT 59.926 47.619 0.00 0.00 0.00 3.74
194 195 1.742268 GGCATTTCTGACCTCAAGCTC 59.258 52.381 0.00 0.00 0.00 4.09
195 196 2.430465 GCATTTCTGACCTCAAGCTCA 58.570 47.619 0.00 0.00 0.00 4.26
196 197 2.816087 GCATTTCTGACCTCAAGCTCAA 59.184 45.455 0.00 0.00 0.00 3.02
197 198 3.254166 GCATTTCTGACCTCAAGCTCAAA 59.746 43.478 0.00 0.00 0.00 2.69
198 199 4.082354 GCATTTCTGACCTCAAGCTCAAAT 60.082 41.667 0.00 0.00 0.00 2.32
199 200 5.566230 GCATTTCTGACCTCAAGCTCAAATT 60.566 40.000 0.00 0.00 0.00 1.82
200 201 6.349611 GCATTTCTGACCTCAAGCTCAAATTA 60.350 38.462 0.00 0.00 0.00 1.40
201 202 7.630082 GCATTTCTGACCTCAAGCTCAAATTAT 60.630 37.037 0.00 0.00 0.00 1.28
202 203 6.992063 TTCTGACCTCAAGCTCAAATTATC 57.008 37.500 0.00 0.00 0.00 1.75
203 204 6.305272 TCTGACCTCAAGCTCAAATTATCT 57.695 37.500 0.00 0.00 0.00 1.98
204 205 6.344500 TCTGACCTCAAGCTCAAATTATCTC 58.656 40.000 0.00 0.00 0.00 2.75
205 206 6.053632 TGACCTCAAGCTCAAATTATCTCA 57.946 37.500 0.00 0.00 0.00 3.27
206 207 6.111382 TGACCTCAAGCTCAAATTATCTCAG 58.889 40.000 0.00 0.00 0.00 3.35
207 208 6.070596 TGACCTCAAGCTCAAATTATCTCAGA 60.071 38.462 0.00 0.00 0.00 3.27
208 209 6.897986 ACCTCAAGCTCAAATTATCTCAGAT 58.102 36.000 0.00 0.00 0.00 2.90
209 210 6.766944 ACCTCAAGCTCAAATTATCTCAGATG 59.233 38.462 0.00 0.00 0.00 2.90
210 211 6.990939 CCTCAAGCTCAAATTATCTCAGATGA 59.009 38.462 0.00 0.00 0.00 2.92
211 212 7.498239 CCTCAAGCTCAAATTATCTCAGATGAA 59.502 37.037 0.00 0.00 0.00 2.57
212 213 8.206325 TCAAGCTCAAATTATCTCAGATGAAC 57.794 34.615 0.00 0.00 0.00 3.18
213 214 7.825761 TCAAGCTCAAATTATCTCAGATGAACA 59.174 33.333 0.00 0.00 0.00 3.18
214 215 7.789273 AGCTCAAATTATCTCAGATGAACAG 57.211 36.000 0.00 0.00 0.00 3.16
215 216 7.337167 AGCTCAAATTATCTCAGATGAACAGT 58.663 34.615 0.00 0.00 0.00 3.55
216 217 8.481314 AGCTCAAATTATCTCAGATGAACAGTA 58.519 33.333 0.00 0.00 0.00 2.74
217 218 9.102757 GCTCAAATTATCTCAGATGAACAGTAA 57.897 33.333 0.00 0.00 0.00 2.24
224 225 9.996554 TTATCTCAGATGAACAGTAAAAACAGA 57.003 29.630 0.00 0.00 0.00 3.41
225 226 8.908786 ATCTCAGATGAACAGTAAAAACAGAA 57.091 30.769 0.00 0.00 0.00 3.02
226 227 8.731275 TCTCAGATGAACAGTAAAAACAGAAA 57.269 30.769 0.00 0.00 0.00 2.52
227 228 9.342308 TCTCAGATGAACAGTAAAAACAGAAAT 57.658 29.630 0.00 0.00 0.00 2.17
228 229 9.956720 CTCAGATGAACAGTAAAAACAGAAATT 57.043 29.630 0.00 0.00 0.00 1.82
276 277 8.830201 ATGTTATAAGTGCTTGCAAATTTTCA 57.170 26.923 0.00 0.00 0.00 2.69
277 278 8.830201 TGTTATAAGTGCTTGCAAATTTTCAT 57.170 26.923 0.00 0.00 0.00 2.57
278 279 8.924691 TGTTATAAGTGCTTGCAAATTTTCATC 58.075 29.630 0.00 0.00 0.00 2.92
279 280 8.924691 GTTATAAGTGCTTGCAAATTTTCATCA 58.075 29.630 0.00 0.00 0.00 3.07
280 281 5.917541 AAGTGCTTGCAAATTTTCATCAG 57.082 34.783 0.00 0.00 0.00 2.90
281 282 5.204409 AGTGCTTGCAAATTTTCATCAGA 57.796 34.783 0.00 0.00 0.00 3.27
282 283 4.986659 AGTGCTTGCAAATTTTCATCAGAC 59.013 37.500 0.00 0.00 0.00 3.51
283 284 3.982701 TGCTTGCAAATTTTCATCAGACG 59.017 39.130 0.00 0.00 0.00 4.18
284 285 3.983344 GCTTGCAAATTTTCATCAGACGT 59.017 39.130 0.00 0.00 0.00 4.34
285 286 4.089065 GCTTGCAAATTTTCATCAGACGTC 59.911 41.667 7.70 7.70 0.00 4.34
286 287 4.827304 TGCAAATTTTCATCAGACGTCA 57.173 36.364 19.50 0.00 0.00 4.35
287 288 4.536065 TGCAAATTTTCATCAGACGTCAC 58.464 39.130 19.50 0.00 0.00 3.67
288 289 4.036144 TGCAAATTTTCATCAGACGTCACA 59.964 37.500 19.50 3.30 0.00 3.58
289 290 5.156355 GCAAATTTTCATCAGACGTCACAT 58.844 37.500 19.50 5.85 0.00 3.21
290 291 5.630680 GCAAATTTTCATCAGACGTCACATT 59.369 36.000 19.50 0.00 0.00 2.71
291 292 6.144402 GCAAATTTTCATCAGACGTCACATTT 59.856 34.615 19.50 4.15 0.00 2.32
292 293 7.495765 CAAATTTTCATCAGACGTCACATTTG 58.504 34.615 19.50 12.30 0.00 2.32
293 294 5.749596 TTTTCATCAGACGTCACATTTGT 57.250 34.783 19.50 0.00 0.00 2.83
294 295 4.730600 TTCATCAGACGTCACATTTGTG 57.269 40.909 19.50 5.31 46.91 3.33
295 296 3.066380 TCATCAGACGTCACATTTGTGG 58.934 45.455 19.50 4.06 45.65 4.17
296 297 2.900716 TCAGACGTCACATTTGTGGA 57.099 45.000 19.50 0.00 45.65 4.02
297 298 3.186702 TCAGACGTCACATTTGTGGAA 57.813 42.857 19.50 0.00 45.65 3.53
298 299 3.130633 TCAGACGTCACATTTGTGGAAG 58.869 45.455 19.50 5.42 45.65 3.46
299 300 2.224079 CAGACGTCACATTTGTGGAAGG 59.776 50.000 19.50 1.53 45.65 3.46
300 301 2.158813 AGACGTCACATTTGTGGAAGGT 60.159 45.455 19.50 4.50 45.65 3.50
302 303 1.946768 CGTCACATTTGTGGAAGGTGT 59.053 47.619 10.60 0.00 46.98 4.16
303 304 2.286950 CGTCACATTTGTGGAAGGTGTG 60.287 50.000 10.60 0.00 46.98 3.82
304 305 2.948979 GTCACATTTGTGGAAGGTGTGA 59.051 45.455 10.60 2.68 46.98 3.58
305 306 2.948979 TCACATTTGTGGAAGGTGTGAC 59.051 45.455 10.60 0.00 46.98 3.67
306 307 2.687425 CACATTTGTGGAAGGTGTGACA 59.313 45.455 2.69 0.00 43.22 3.58
307 308 3.130164 CACATTTGTGGAAGGTGTGACAA 59.870 43.478 2.69 0.00 43.22 3.18
308 309 3.766591 ACATTTGTGGAAGGTGTGACAAA 59.233 39.130 0.00 0.00 41.27 2.83
309 310 4.221703 ACATTTGTGGAAGGTGTGACAAAA 59.778 37.500 0.00 0.00 40.61 2.44
310 311 3.859411 TTGTGGAAGGTGTGACAAAAC 57.141 42.857 0.00 0.00 0.00 2.43
311 312 2.796557 TGTGGAAGGTGTGACAAAACA 58.203 42.857 0.00 0.00 0.00 2.83
312 313 3.157881 TGTGGAAGGTGTGACAAAACAA 58.842 40.909 0.00 0.00 0.00 2.83
313 314 3.766591 TGTGGAAGGTGTGACAAAACAAT 59.233 39.130 0.00 0.00 0.00 2.71
314 315 4.221703 TGTGGAAGGTGTGACAAAACAATT 59.778 37.500 0.00 0.00 0.00 2.32
315 316 4.566360 GTGGAAGGTGTGACAAAACAATTG 59.434 41.667 3.24 3.24 0.00 2.32
316 317 4.464244 TGGAAGGTGTGACAAAACAATTGA 59.536 37.500 13.59 0.00 0.00 2.57
317 318 5.047021 TGGAAGGTGTGACAAAACAATTGAA 60.047 36.000 13.59 0.00 0.00 2.69
318 319 5.519927 GGAAGGTGTGACAAAACAATTGAAG 59.480 40.000 13.59 1.22 0.00 3.02
319 320 4.432712 AGGTGTGACAAAACAATTGAAGC 58.567 39.130 13.59 0.00 0.00 3.86
320 321 4.160252 AGGTGTGACAAAACAATTGAAGCT 59.840 37.500 13.59 0.00 0.00 3.74
321 322 4.504097 GGTGTGACAAAACAATTGAAGCTC 59.496 41.667 13.59 0.64 0.00 4.09
322 323 4.504097 GTGTGACAAAACAATTGAAGCTCC 59.496 41.667 13.59 0.00 0.00 4.70
323 324 3.730715 GTGACAAAACAATTGAAGCTCCG 59.269 43.478 13.59 0.00 0.00 4.63
324 325 3.629855 TGACAAAACAATTGAAGCTCCGA 59.370 39.130 13.59 0.00 0.00 4.55
325 326 4.097135 TGACAAAACAATTGAAGCTCCGAA 59.903 37.500 13.59 0.00 0.00 4.30
326 327 5.004922 ACAAAACAATTGAAGCTCCGAAA 57.995 34.783 13.59 0.00 0.00 3.46
327 328 5.415221 ACAAAACAATTGAAGCTCCGAAAA 58.585 33.333 13.59 0.00 0.00 2.29
328 329 6.048509 ACAAAACAATTGAAGCTCCGAAAAT 58.951 32.000 13.59 0.00 0.00 1.82
329 330 6.018832 ACAAAACAATTGAAGCTCCGAAAATG 60.019 34.615 13.59 0.00 0.00 2.32
330 331 3.578688 ACAATTGAAGCTCCGAAAATGC 58.421 40.909 13.59 0.00 0.00 3.56
331 332 3.256631 ACAATTGAAGCTCCGAAAATGCT 59.743 39.130 13.59 0.00 38.87 3.79
332 333 4.458989 ACAATTGAAGCTCCGAAAATGCTA 59.541 37.500 13.59 0.00 35.85 3.49
333 334 4.622701 ATTGAAGCTCCGAAAATGCTAC 57.377 40.909 0.00 0.00 35.85 3.58
334 335 2.356135 TGAAGCTCCGAAAATGCTACC 58.644 47.619 0.00 0.00 35.85 3.18
335 336 2.027192 TGAAGCTCCGAAAATGCTACCT 60.027 45.455 0.00 0.00 35.85 3.08
336 337 2.789409 AGCTCCGAAAATGCTACCTT 57.211 45.000 0.00 0.00 35.05 3.50
337 338 2.633488 AGCTCCGAAAATGCTACCTTC 58.367 47.619 0.00 0.00 35.05 3.46
338 339 1.327764 GCTCCGAAAATGCTACCTTCG 59.672 52.381 0.00 0.00 41.18 3.79
339 340 2.888594 CTCCGAAAATGCTACCTTCGA 58.111 47.619 5.09 0.00 43.53 3.71
340 341 3.259064 CTCCGAAAATGCTACCTTCGAA 58.741 45.455 0.00 0.00 43.53 3.71
341 342 3.666274 TCCGAAAATGCTACCTTCGAAA 58.334 40.909 0.00 0.00 43.53 3.46
342 343 3.682858 TCCGAAAATGCTACCTTCGAAAG 59.317 43.478 0.00 0.00 43.53 2.62
376 377 7.815641 AGCAATGGTTTTATTTTAATTGCCAC 58.184 30.769 13.00 0.00 46.93 5.01
385 386 0.885196 TTAATTGCCACGGCTTCCAC 59.115 50.000 9.92 0.00 42.51 4.02
386 387 0.250945 TAATTGCCACGGCTTCCACA 60.251 50.000 9.92 0.00 42.51 4.17
403 404 7.609146 GGCTTCCACAAATATGATCTCATGATA 59.391 37.037 0.00 0.00 37.15 2.15
444 445 9.665264 CTTAGAACCTTTGTCAAAGTTTATCAC 57.335 33.333 21.12 4.69 36.77 3.06
448 449 9.313118 GAACCTTTGTCAAAGTTTATCACAAAT 57.687 29.630 21.12 6.04 36.60 2.32
449 450 9.665719 AACCTTTGTCAAAGTTTATCACAAATT 57.334 25.926 21.12 8.70 36.60 1.82
450 451 9.665719 ACCTTTGTCAAAGTTTATCACAAATTT 57.334 25.926 21.12 0.00 36.60 1.82
525 526 4.828072 ACTTTCCCTATCAACTCCTCAC 57.172 45.455 0.00 0.00 0.00 3.51
604 606 3.793712 TGTAGGGGTAGCAAAGTCCTTA 58.206 45.455 0.00 0.00 0.00 2.69
609 611 4.831155 AGGGGTAGCAAAGTCCTTAAAAAC 59.169 41.667 0.00 0.00 0.00 2.43
619 621 7.148222 GCAAAGTCCTTAAAAACTAGGATCCTC 60.148 40.741 20.22 0.00 42.27 3.71
621 623 6.948589 AGTCCTTAAAAACTAGGATCCTCAC 58.051 40.000 20.22 0.00 42.27 3.51
624 626 7.829706 GTCCTTAAAAACTAGGATCCTCACAAT 59.170 37.037 20.22 4.33 42.27 2.71
638 640 1.668237 TCACAATTGTCACACGTGTGG 59.332 47.619 39.88 27.57 45.65 4.17
694 703 9.692749 GATATAAATTTAGTGACGTGGAGATGA 57.307 33.333 3.94 0.00 0.00 2.92
709 718 6.430451 GTGGAGATGACAAGTTTAGTTGTTG 58.570 40.000 4.57 0.00 40.83 3.33
745 754 4.392921 TTTTTCGGATGGCAAGTTTTGA 57.607 36.364 0.00 0.00 0.00 2.69
814 1006 1.882625 GAGTGCTGCGTGTCACACA 60.883 57.895 9.06 0.00 35.47 3.72
979 1196 0.247736 GGCACTCCAGTCGATCAAGT 59.752 55.000 0.00 0.00 0.00 3.16
980 1197 1.338200 GGCACTCCAGTCGATCAAGTT 60.338 52.381 0.00 0.00 0.00 2.66
988 1215 3.380004 CCAGTCGATCAAGTTCTAGCTCT 59.620 47.826 0.00 0.00 0.00 4.09
1035 1274 4.980805 GCCAACGACACCGGCTCA 62.981 66.667 0.00 0.00 42.78 4.26
1458 1697 1.737793 GTTGTTACAGATTGGCTCGGG 59.262 52.381 0.00 0.00 0.00 5.14
1585 1824 4.904466 GGAAGCTCGCCGAACTAA 57.096 55.556 0.00 0.00 0.00 2.24
1998 2237 3.052082 CACAAGTGGCTCCTGGCG 61.052 66.667 0.00 0.00 42.94 5.69
2635 2880 1.089112 CAGCGTGCATGAGAAATGGA 58.911 50.000 10.93 0.00 0.00 3.41
2689 2934 1.286354 TTCCTACGCGTTGGCTTTCG 61.286 55.000 31.04 10.07 36.88 3.46
2691 2936 0.733566 CCTACGCGTTGGCTTTCGTA 60.734 55.000 25.97 0.00 36.50 3.43
2692 2937 0.364515 CTACGCGTTGGCTTTCGTAC 59.635 55.000 20.78 0.00 36.50 3.67
2693 2938 1.008361 TACGCGTTGGCTTTCGTACC 61.008 55.000 20.78 0.00 36.50 3.34
2694 2939 2.311701 CGCGTTGGCTTTCGTACCA 61.312 57.895 0.00 0.00 36.88 3.25
2695 2940 1.205820 GCGTTGGCTTTCGTACCAC 59.794 57.895 0.00 0.00 35.10 4.16
2697 2942 1.205820 GTTGGCTTTCGTACCACGC 59.794 57.895 0.00 0.00 42.21 5.34
2698 2943 2.311701 TTGGCTTTCGTACCACGCG 61.312 57.895 3.53 3.53 42.21 6.01
2699 2944 2.735857 GGCTTTCGTACCACGCGT 60.736 61.111 5.58 5.58 42.21 6.01
2700 2945 2.312436 GGCTTTCGTACCACGCGTT 61.312 57.895 10.22 0.00 42.21 4.84
2701 2946 1.154727 GCTTTCGTACCACGCGTTG 60.155 57.895 10.22 9.54 42.21 4.10
2730 2991 1.673168 GCATCTTCCTGTCCATGGAC 58.327 55.000 33.97 33.97 44.77 4.02
2745 3007 6.777091 TGTCCATGGACTAATATTGGATTTGG 59.223 38.462 37.92 7.05 44.80 3.28
2828 3095 7.022055 AGACGTCACAACACAAAATCATTTA 57.978 32.000 19.50 0.00 0.00 1.40
2832 3099 9.176181 ACGTCACAACACAAAATCATTTATAAC 57.824 29.630 0.00 0.00 0.00 1.89
2946 3216 6.674694 TTGCTCAGCTTTTCTCTATCATTC 57.325 37.500 0.00 0.00 0.00 2.67
2975 3245 8.196771 AGACAACTTCATTTGCTGAATTACAAA 58.803 29.630 3.95 3.95 42.87 2.83
2980 3250 9.143631 ACTTCATTTGCTGAATTACAAATTAGC 57.856 29.630 9.63 0.00 42.34 3.09
3243 3519 8.588290 ATTGAAATAACTAGTACAAATGCCCA 57.412 30.769 0.00 0.00 0.00 5.36
3246 3522 7.613801 TGAAATAACTAGTACAAATGCCCATGT 59.386 33.333 0.00 0.00 0.00 3.21
3288 3565 6.749923 AAATATCAGAAAACCTGCTCTGTC 57.250 37.500 0.00 0.00 42.62 3.51
3290 3567 6.798427 ATATCAGAAAACCTGCTCTGTCTA 57.202 37.500 0.00 0.00 42.62 2.59
3349 3626 9.756571 ATAAACATTGGTAATAAGGTTACACCA 57.243 29.630 0.00 0.00 41.95 4.17
3373 3650 2.594529 TCGCTTTTCGAAGCATCAAC 57.405 45.000 9.63 0.00 45.36 3.18
3632 4311 8.445493 ACTTTTTGAAAGCAAGAACAATTTGAG 58.555 29.630 2.79 0.00 35.04 3.02
3634 4313 8.545229 TTTTGAAAGCAAGAACAATTTGAGAA 57.455 26.923 2.79 0.00 35.04 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.508840 GCCTCCCGCATTTGTCCG 61.509 66.667 0.00 0.00 37.47 4.79
1 2 1.250840 AAAGCCTCCCGCATTTGTCC 61.251 55.000 0.00 0.00 41.38 4.02
2 3 0.603065 AAAAGCCTCCCGCATTTGTC 59.397 50.000 0.00 0.00 37.03 3.18
3 4 1.047801 AAAAAGCCTCCCGCATTTGT 58.952 45.000 0.00 0.00 37.40 2.83
4 5 1.270252 ACAAAAAGCCTCCCGCATTTG 60.270 47.619 9.86 9.86 45.13 2.32
5 6 1.047801 ACAAAAAGCCTCCCGCATTT 58.952 45.000 0.00 0.00 39.99 2.32
6 7 0.318120 CACAAAAAGCCTCCCGCATT 59.682 50.000 0.00 0.00 41.38 3.56
10 11 1.112916 AACCCACAAAAAGCCTCCCG 61.113 55.000 0.00 0.00 0.00 5.14
11 12 0.392706 CAACCCACAAAAAGCCTCCC 59.607 55.000 0.00 0.00 0.00 4.30
12 13 1.068588 GACAACCCACAAAAAGCCTCC 59.931 52.381 0.00 0.00 0.00 4.30
13 14 1.754226 TGACAACCCACAAAAAGCCTC 59.246 47.619 0.00 0.00 0.00 4.70
14 15 1.859302 TGACAACCCACAAAAAGCCT 58.141 45.000 0.00 0.00 0.00 4.58
15 16 2.871633 CAATGACAACCCACAAAAAGCC 59.128 45.455 0.00 0.00 0.00 4.35
16 17 3.791245 TCAATGACAACCCACAAAAAGC 58.209 40.909 0.00 0.00 0.00 3.51
17 18 5.659463 TCTTCAATGACAACCCACAAAAAG 58.341 37.500 0.00 0.00 0.00 2.27
18 19 5.667539 TCTTCAATGACAACCCACAAAAA 57.332 34.783 0.00 0.00 0.00 1.94
19 20 5.599732 CATCTTCAATGACAACCCACAAAA 58.400 37.500 0.00 0.00 0.00 2.44
20 21 4.501229 GCATCTTCAATGACAACCCACAAA 60.501 41.667 0.00 0.00 0.00 2.83
21 22 3.005684 GCATCTTCAATGACAACCCACAA 59.994 43.478 0.00 0.00 0.00 3.33
22 23 2.557924 GCATCTTCAATGACAACCCACA 59.442 45.455 0.00 0.00 0.00 4.17
23 24 2.094545 GGCATCTTCAATGACAACCCAC 60.095 50.000 0.00 0.00 0.00 4.61
24 25 2.170166 GGCATCTTCAATGACAACCCA 58.830 47.619 0.00 0.00 0.00 4.51
25 26 1.478105 GGGCATCTTCAATGACAACCC 59.522 52.381 0.00 0.00 0.00 4.11
26 27 2.450476 AGGGCATCTTCAATGACAACC 58.550 47.619 0.00 0.00 0.00 3.77
27 28 5.643379 TTTAGGGCATCTTCAATGACAAC 57.357 39.130 0.00 0.00 0.00 3.32
28 29 5.538053 TGTTTTAGGGCATCTTCAATGACAA 59.462 36.000 0.00 0.00 0.00 3.18
29 30 5.076182 TGTTTTAGGGCATCTTCAATGACA 58.924 37.500 0.00 0.00 0.00 3.58
30 31 5.643379 TGTTTTAGGGCATCTTCAATGAC 57.357 39.130 0.00 0.00 0.00 3.06
31 32 5.336690 GCTTGTTTTAGGGCATCTTCAATGA 60.337 40.000 0.00 0.00 0.00 2.57
32 33 4.866486 GCTTGTTTTAGGGCATCTTCAATG 59.134 41.667 0.00 0.00 0.00 2.82
33 34 4.527816 TGCTTGTTTTAGGGCATCTTCAAT 59.472 37.500 0.00 0.00 0.00 2.57
34 35 3.894427 TGCTTGTTTTAGGGCATCTTCAA 59.106 39.130 0.00 0.00 0.00 2.69
35 36 3.495331 TGCTTGTTTTAGGGCATCTTCA 58.505 40.909 0.00 0.00 0.00 3.02
36 37 4.158394 TCATGCTTGTTTTAGGGCATCTTC 59.842 41.667 0.00 0.00 42.49 2.87
37 38 4.088634 TCATGCTTGTTTTAGGGCATCTT 58.911 39.130 0.00 0.00 42.49 2.40
38 39 3.700538 TCATGCTTGTTTTAGGGCATCT 58.299 40.909 0.00 0.00 42.49 2.90
39 40 4.454728 TTCATGCTTGTTTTAGGGCATC 57.545 40.909 0.00 0.00 42.49 3.91
40 41 4.888326 TTTCATGCTTGTTTTAGGGCAT 57.112 36.364 0.00 0.00 44.77 4.40
41 42 4.679373 TTTTCATGCTTGTTTTAGGGCA 57.321 36.364 0.00 0.00 39.06 5.36
72 73 6.915843 ACTAAATCGATTTGCGTGAACTTTTT 59.084 30.769 29.20 5.03 41.80 1.94
73 74 6.435428 ACTAAATCGATTTGCGTGAACTTTT 58.565 32.000 29.20 5.45 41.80 2.27
74 75 5.997385 ACTAAATCGATTTGCGTGAACTTT 58.003 33.333 29.20 5.64 41.80 2.66
75 76 5.390567 GGACTAAATCGATTTGCGTGAACTT 60.391 40.000 29.20 5.37 41.80 2.66
76 77 4.092968 GGACTAAATCGATTTGCGTGAACT 59.907 41.667 29.20 6.08 41.80 3.01
77 78 4.331962 GGACTAAATCGATTTGCGTGAAC 58.668 43.478 29.20 15.10 41.80 3.18
78 79 3.372822 GGGACTAAATCGATTTGCGTGAA 59.627 43.478 29.20 10.56 41.80 3.18
79 80 2.933906 GGGACTAAATCGATTTGCGTGA 59.066 45.455 29.20 11.23 41.80 4.35
80 81 2.675844 TGGGACTAAATCGATTTGCGTG 59.324 45.455 29.20 18.85 41.80 5.34
81 82 2.936498 CTGGGACTAAATCGATTTGCGT 59.064 45.455 29.20 24.42 41.80 5.24
82 83 2.286418 GCTGGGACTAAATCGATTTGCG 60.286 50.000 29.20 21.88 42.69 4.85
83 84 2.286418 CGCTGGGACTAAATCGATTTGC 60.286 50.000 29.20 20.94 0.00 3.68
84 85 2.287915 CCGCTGGGACTAAATCGATTTG 59.712 50.000 29.20 21.11 34.06 2.32
85 86 2.561569 CCGCTGGGACTAAATCGATTT 58.438 47.619 25.48 25.48 34.06 2.17
86 87 2.240493 CCGCTGGGACTAAATCGATT 57.760 50.000 4.39 4.39 34.06 3.34
87 88 2.032680 TCCCGCTGGGACTAAATCGAT 61.033 52.381 11.66 0.00 46.17 3.59
88 89 0.685131 TCCCGCTGGGACTAAATCGA 60.685 55.000 11.66 0.00 46.17 3.59
89 90 0.249489 CTCCCGCTGGGACTAAATCG 60.249 60.000 11.66 0.00 46.17 3.34
90 91 0.533085 GCTCCCGCTGGGACTAAATC 60.533 60.000 11.66 0.00 46.17 2.17
91 92 1.527370 GCTCCCGCTGGGACTAAAT 59.473 57.895 11.66 0.00 46.17 1.40
92 93 2.987125 GCTCCCGCTGGGACTAAA 59.013 61.111 11.66 0.00 46.17 1.85
93 94 3.458163 CGCTCCCGCTGGGACTAA 61.458 66.667 11.66 0.00 46.17 2.24
94 95 4.435970 TCGCTCCCGCTGGGACTA 62.436 66.667 11.66 0.00 46.17 2.59
98 99 3.605749 TTTTCTCGCTCCCGCTGGG 62.606 63.158 7.24 7.24 46.11 4.45
99 100 1.671054 TTTTTCTCGCTCCCGCTGG 60.671 57.895 0.00 0.00 0.00 4.85
100 101 3.966215 TTTTTCTCGCTCCCGCTG 58.034 55.556 0.00 0.00 0.00 5.18
114 115 0.686789 GCCCCTTCATGCTGGTTTTT 59.313 50.000 0.00 0.00 0.00 1.94
115 116 0.178924 AGCCCCTTCATGCTGGTTTT 60.179 50.000 0.00 0.00 36.23 2.43
116 117 1.466526 AGCCCCTTCATGCTGGTTT 59.533 52.632 0.00 0.00 36.23 3.27
117 118 3.184291 AGCCCCTTCATGCTGGTT 58.816 55.556 0.00 0.00 36.23 3.67
121 122 1.633915 CCTCTCAGCCCCTTCATGCT 61.634 60.000 0.00 0.00 38.67 3.79
122 123 1.153005 CCTCTCAGCCCCTTCATGC 60.153 63.158 0.00 0.00 0.00 4.06
123 124 0.107312 CACCTCTCAGCCCCTTCATG 60.107 60.000 0.00 0.00 0.00 3.07
124 125 0.252881 TCACCTCTCAGCCCCTTCAT 60.253 55.000 0.00 0.00 0.00 2.57
125 126 0.906756 CTCACCTCTCAGCCCCTTCA 60.907 60.000 0.00 0.00 0.00 3.02
126 127 1.621672 CCTCACCTCTCAGCCCCTTC 61.622 65.000 0.00 0.00 0.00 3.46
127 128 1.614824 CCTCACCTCTCAGCCCCTT 60.615 63.158 0.00 0.00 0.00 3.95
128 129 2.040278 CCTCACCTCTCAGCCCCT 59.960 66.667 0.00 0.00 0.00 4.79
129 130 3.791586 GCCTCACCTCTCAGCCCC 61.792 72.222 0.00 0.00 0.00 5.80
130 131 4.154347 CGCCTCACCTCTCAGCCC 62.154 72.222 0.00 0.00 0.00 5.19
131 132 2.172483 TTTCGCCTCACCTCTCAGCC 62.172 60.000 0.00 0.00 0.00 4.85
132 133 1.016653 GTTTCGCCTCACCTCTCAGC 61.017 60.000 0.00 0.00 0.00 4.26
133 134 0.605589 AGTTTCGCCTCACCTCTCAG 59.394 55.000 0.00 0.00 0.00 3.35
134 135 1.919240 TAGTTTCGCCTCACCTCTCA 58.081 50.000 0.00 0.00 0.00 3.27
135 136 2.994578 GTTTAGTTTCGCCTCACCTCTC 59.005 50.000 0.00 0.00 0.00 3.20
136 137 2.289506 GGTTTAGTTTCGCCTCACCTCT 60.290 50.000 0.00 0.00 0.00 3.69
137 138 2.074576 GGTTTAGTTTCGCCTCACCTC 58.925 52.381 0.00 0.00 0.00 3.85
138 139 1.418637 TGGTTTAGTTTCGCCTCACCT 59.581 47.619 0.00 0.00 0.00 4.00
139 140 1.804748 CTGGTTTAGTTTCGCCTCACC 59.195 52.381 0.00 0.00 0.00 4.02
140 141 2.490991 ACTGGTTTAGTTTCGCCTCAC 58.509 47.619 0.00 0.00 35.67 3.51
141 142 2.922740 ACTGGTTTAGTTTCGCCTCA 57.077 45.000 0.00 0.00 35.67 3.86
142 143 3.683340 CCTTACTGGTTTAGTTTCGCCTC 59.317 47.826 0.00 0.00 40.89 4.70
143 144 3.671716 CCTTACTGGTTTAGTTTCGCCT 58.328 45.455 0.00 0.00 40.89 5.52
144 145 2.161012 GCCTTACTGGTTTAGTTTCGCC 59.839 50.000 0.00 0.00 40.89 5.54
145 146 2.159747 CGCCTTACTGGTTTAGTTTCGC 60.160 50.000 0.00 0.00 40.89 4.70
146 147 2.414138 CCGCCTTACTGGTTTAGTTTCG 59.586 50.000 0.00 0.00 40.89 3.46
147 148 2.745821 CCCGCCTTACTGGTTTAGTTTC 59.254 50.000 0.00 0.00 40.89 2.78
148 149 2.553685 CCCCGCCTTACTGGTTTAGTTT 60.554 50.000 0.00 0.00 40.89 2.66
149 150 1.003928 CCCCGCCTTACTGGTTTAGTT 59.996 52.381 0.00 0.00 40.89 2.24
150 151 0.616891 CCCCGCCTTACTGGTTTAGT 59.383 55.000 0.00 0.00 43.56 2.24
151 152 0.906775 TCCCCGCCTTACTGGTTTAG 59.093 55.000 0.00 0.00 38.35 1.85
152 153 0.614812 GTCCCCGCCTTACTGGTTTA 59.385 55.000 0.00 0.00 38.35 2.01
153 154 1.377612 GTCCCCGCCTTACTGGTTT 59.622 57.895 0.00 0.00 38.35 3.27
154 155 1.205460 ATGTCCCCGCCTTACTGGTT 61.205 55.000 0.00 0.00 38.35 3.67
155 156 1.615424 ATGTCCCCGCCTTACTGGT 60.615 57.895 0.00 0.00 38.35 4.00
156 157 1.153168 CATGTCCCCGCCTTACTGG 60.153 63.158 0.00 0.00 39.35 4.00
157 158 1.153168 CCATGTCCCCGCCTTACTG 60.153 63.158 0.00 0.00 0.00 2.74
158 159 3.043999 GCCATGTCCCCGCCTTACT 62.044 63.158 0.00 0.00 0.00 2.24
159 160 2.516225 GCCATGTCCCCGCCTTAC 60.516 66.667 0.00 0.00 0.00 2.34
160 161 1.932156 AATGCCATGTCCCCGCCTTA 61.932 55.000 0.00 0.00 0.00 2.69
161 162 2.803593 AAATGCCATGTCCCCGCCTT 62.804 55.000 0.00 0.00 0.00 4.35
162 163 3.301222 AAATGCCATGTCCCCGCCT 62.301 57.895 0.00 0.00 0.00 5.52
163 164 2.759560 AAATGCCATGTCCCCGCC 60.760 61.111 0.00 0.00 0.00 6.13
164 165 1.754234 AGAAATGCCATGTCCCCGC 60.754 57.895 0.00 0.00 0.00 6.13
165 166 0.394216 TCAGAAATGCCATGTCCCCG 60.394 55.000 0.00 0.00 0.00 5.73
166 167 1.106285 GTCAGAAATGCCATGTCCCC 58.894 55.000 0.00 0.00 0.00 4.81
167 168 1.106285 GGTCAGAAATGCCATGTCCC 58.894 55.000 0.00 0.00 0.00 4.46
168 169 2.019984 GAGGTCAGAAATGCCATGTCC 58.980 52.381 0.00 0.00 0.00 4.02
169 170 2.715046 TGAGGTCAGAAATGCCATGTC 58.285 47.619 0.00 0.00 0.00 3.06
170 171 2.885135 TGAGGTCAGAAATGCCATGT 57.115 45.000 0.00 0.00 0.00 3.21
171 172 2.159282 GCTTGAGGTCAGAAATGCCATG 60.159 50.000 0.00 0.00 0.00 3.66
172 173 2.097825 GCTTGAGGTCAGAAATGCCAT 58.902 47.619 0.00 0.00 0.00 4.40
173 174 1.074405 AGCTTGAGGTCAGAAATGCCA 59.926 47.619 0.00 0.00 0.00 4.92
174 175 1.742268 GAGCTTGAGGTCAGAAATGCC 59.258 52.381 5.39 0.00 41.81 4.40
175 176 2.430465 TGAGCTTGAGGTCAGAAATGC 58.570 47.619 8.70 0.00 46.24 3.56
183 184 6.344500 TCTGAGATAATTTGAGCTTGAGGTC 58.656 40.000 3.34 3.34 42.48 3.85
184 185 6.305272 TCTGAGATAATTTGAGCTTGAGGT 57.695 37.500 0.00 0.00 0.00 3.85
185 186 6.990939 TCATCTGAGATAATTTGAGCTTGAGG 59.009 38.462 0.00 0.00 0.00 3.86
186 187 8.336806 GTTCATCTGAGATAATTTGAGCTTGAG 58.663 37.037 0.00 0.00 0.00 3.02
187 188 7.825761 TGTTCATCTGAGATAATTTGAGCTTGA 59.174 33.333 0.00 0.00 0.00 3.02
188 189 7.982224 TGTTCATCTGAGATAATTTGAGCTTG 58.018 34.615 0.00 0.00 0.00 4.01
189 190 7.828223 ACTGTTCATCTGAGATAATTTGAGCTT 59.172 33.333 0.00 0.00 0.00 3.74
190 191 7.337167 ACTGTTCATCTGAGATAATTTGAGCT 58.663 34.615 0.00 0.00 0.00 4.09
191 192 7.551035 ACTGTTCATCTGAGATAATTTGAGC 57.449 36.000 0.00 0.00 0.00 4.26
198 199 9.996554 TCTGTTTTTACTGTTCATCTGAGATAA 57.003 29.630 0.00 0.00 0.00 1.75
199 200 9.996554 TTCTGTTTTTACTGTTCATCTGAGATA 57.003 29.630 0.00 0.00 0.00 1.98
200 201 8.908786 TTCTGTTTTTACTGTTCATCTGAGAT 57.091 30.769 0.00 0.00 0.00 2.75
201 202 8.731275 TTTCTGTTTTTACTGTTCATCTGAGA 57.269 30.769 0.00 0.00 0.00 3.27
202 203 9.956720 AATTTCTGTTTTTACTGTTCATCTGAG 57.043 29.630 0.00 0.00 0.00 3.35
250 251 9.270640 TGAAAATTTGCAAGCACTTATAACATT 57.729 25.926 0.00 0.00 0.00 2.71
251 252 8.830201 TGAAAATTTGCAAGCACTTATAACAT 57.170 26.923 0.00 0.00 0.00 2.71
252 253 8.830201 ATGAAAATTTGCAAGCACTTATAACA 57.170 26.923 2.14 0.00 0.00 2.41
253 254 8.924691 TGATGAAAATTTGCAAGCACTTATAAC 58.075 29.630 2.14 0.00 0.00 1.89
254 255 9.142515 CTGATGAAAATTTGCAAGCACTTATAA 57.857 29.630 2.14 0.00 0.00 0.98
255 256 8.522003 TCTGATGAAAATTTGCAAGCACTTATA 58.478 29.630 2.14 0.00 0.00 0.98
256 257 7.330208 GTCTGATGAAAATTTGCAAGCACTTAT 59.670 33.333 2.14 0.00 0.00 1.73
257 258 6.642131 GTCTGATGAAAATTTGCAAGCACTTA 59.358 34.615 2.14 0.00 0.00 2.24
258 259 5.464389 GTCTGATGAAAATTTGCAAGCACTT 59.536 36.000 2.14 0.00 0.00 3.16
259 260 4.986659 GTCTGATGAAAATTTGCAAGCACT 59.013 37.500 2.14 0.00 0.00 4.40
260 261 4.143473 CGTCTGATGAAAATTTGCAAGCAC 60.143 41.667 2.14 0.00 0.00 4.40
261 262 3.982701 CGTCTGATGAAAATTTGCAAGCA 59.017 39.130 2.14 4.10 0.00 3.91
262 263 3.983344 ACGTCTGATGAAAATTTGCAAGC 59.017 39.130 2.14 0.00 0.00 4.01
263 264 5.116074 GTGACGTCTGATGAAAATTTGCAAG 59.884 40.000 17.92 0.00 0.00 4.01
264 265 4.975502 GTGACGTCTGATGAAAATTTGCAA 59.024 37.500 17.92 0.00 0.00 4.08
265 266 4.036144 TGTGACGTCTGATGAAAATTTGCA 59.964 37.500 17.92 0.07 0.00 4.08
266 267 4.536065 TGTGACGTCTGATGAAAATTTGC 58.464 39.130 17.92 0.00 0.00 3.68
267 268 7.167968 ACAAATGTGACGTCTGATGAAAATTTG 59.832 33.333 17.92 18.20 37.33 2.32
268 269 7.202526 ACAAATGTGACGTCTGATGAAAATTT 58.797 30.769 17.92 5.45 0.00 1.82
269 270 6.738114 ACAAATGTGACGTCTGATGAAAATT 58.262 32.000 17.92 0.00 0.00 1.82
270 271 6.317789 ACAAATGTGACGTCTGATGAAAAT 57.682 33.333 17.92 0.00 0.00 1.82
271 272 5.749596 ACAAATGTGACGTCTGATGAAAA 57.250 34.783 17.92 0.00 0.00 2.29
285 286 2.687425 TGTCACACCTTCCACAAATGTG 59.313 45.455 6.57 6.57 45.23 3.21
286 287 3.011566 TGTCACACCTTCCACAAATGT 57.988 42.857 0.00 0.00 0.00 2.71
287 288 4.383850 TTTGTCACACCTTCCACAAATG 57.616 40.909 0.00 0.00 34.56 2.32
288 289 4.221703 TGTTTTGTCACACCTTCCACAAAT 59.778 37.500 0.00 0.00 38.27 2.32
289 290 3.574396 TGTTTTGTCACACCTTCCACAAA 59.426 39.130 0.00 0.00 37.04 2.83
290 291 3.157881 TGTTTTGTCACACCTTCCACAA 58.842 40.909 0.00 0.00 0.00 3.33
291 292 2.796557 TGTTTTGTCACACCTTCCACA 58.203 42.857 0.00 0.00 0.00 4.17
292 293 3.859411 TTGTTTTGTCACACCTTCCAC 57.141 42.857 0.00 0.00 0.00 4.02
293 294 4.464244 TCAATTGTTTTGTCACACCTTCCA 59.536 37.500 5.13 0.00 0.00 3.53
294 295 5.004922 TCAATTGTTTTGTCACACCTTCC 57.995 39.130 5.13 0.00 0.00 3.46
295 296 5.005682 GCTTCAATTGTTTTGTCACACCTTC 59.994 40.000 5.13 0.00 0.00 3.46
296 297 4.869861 GCTTCAATTGTTTTGTCACACCTT 59.130 37.500 5.13 0.00 0.00 3.50
297 298 4.160252 AGCTTCAATTGTTTTGTCACACCT 59.840 37.500 5.13 0.00 0.00 4.00
298 299 4.432712 AGCTTCAATTGTTTTGTCACACC 58.567 39.130 5.13 0.00 0.00 4.16
299 300 4.504097 GGAGCTTCAATTGTTTTGTCACAC 59.496 41.667 5.13 0.00 0.00 3.82
300 301 4.681744 GGAGCTTCAATTGTTTTGTCACA 58.318 39.130 5.13 0.00 0.00 3.58
301 302 3.730715 CGGAGCTTCAATTGTTTTGTCAC 59.269 43.478 5.13 0.00 0.00 3.67
302 303 3.629855 TCGGAGCTTCAATTGTTTTGTCA 59.370 39.130 5.13 0.00 0.00 3.58
303 304 4.223320 TCGGAGCTTCAATTGTTTTGTC 57.777 40.909 5.13 0.00 0.00 3.18
304 305 4.647424 TTCGGAGCTTCAATTGTTTTGT 57.353 36.364 5.13 0.00 0.00 2.83
305 306 5.964887 TTTTCGGAGCTTCAATTGTTTTG 57.035 34.783 5.13 0.00 0.00 2.44
306 307 5.050159 GCATTTTCGGAGCTTCAATTGTTTT 60.050 36.000 5.13 0.00 0.00 2.43
307 308 4.448732 GCATTTTCGGAGCTTCAATTGTTT 59.551 37.500 5.13 0.00 0.00 2.83
308 309 3.989817 GCATTTTCGGAGCTTCAATTGTT 59.010 39.130 5.13 0.00 0.00 2.83
309 310 3.256631 AGCATTTTCGGAGCTTCAATTGT 59.743 39.130 5.13 0.00 34.37 2.71
310 311 3.841643 AGCATTTTCGGAGCTTCAATTG 58.158 40.909 0.00 0.00 34.37 2.32
311 312 4.142381 GGTAGCATTTTCGGAGCTTCAATT 60.142 41.667 0.00 0.00 39.68 2.32
312 313 3.378427 GGTAGCATTTTCGGAGCTTCAAT 59.622 43.478 0.00 0.00 39.68 2.57
313 314 2.747446 GGTAGCATTTTCGGAGCTTCAA 59.253 45.455 0.00 0.00 39.68 2.69
314 315 2.027192 AGGTAGCATTTTCGGAGCTTCA 60.027 45.455 0.00 0.00 39.68 3.02
315 316 2.633488 AGGTAGCATTTTCGGAGCTTC 58.367 47.619 0.00 0.00 39.68 3.86
316 317 2.789409 AGGTAGCATTTTCGGAGCTT 57.211 45.000 0.00 0.00 39.68 3.74
317 318 2.633488 GAAGGTAGCATTTTCGGAGCT 58.367 47.619 0.00 0.00 42.14 4.09
318 319 1.327764 CGAAGGTAGCATTTTCGGAGC 59.672 52.381 6.84 0.00 39.82 4.70
319 320 2.888594 TCGAAGGTAGCATTTTCGGAG 58.111 47.619 12.87 0.00 42.74 4.63
320 321 3.322211 TTCGAAGGTAGCATTTTCGGA 57.678 42.857 12.87 3.85 42.74 4.55
321 322 3.727970 GCTTTCGAAGGTAGCATTTTCGG 60.728 47.826 14.02 1.74 42.74 4.30
322 323 3.120338 TGCTTTCGAAGGTAGCATTTTCG 60.120 43.478 16.94 8.10 43.58 3.46
323 324 4.419522 TGCTTTCGAAGGTAGCATTTTC 57.580 40.909 16.94 0.00 39.79 2.29
329 330 3.190535 TCCAAAATGCTTTCGAAGGTAGC 59.809 43.478 12.39 12.39 35.50 3.58
330 331 4.672801 GCTCCAAAATGCTTTCGAAGGTAG 60.673 45.833 9.20 0.00 0.00 3.18
331 332 3.190535 GCTCCAAAATGCTTTCGAAGGTA 59.809 43.478 9.20 4.69 0.00 3.08
332 333 2.029918 GCTCCAAAATGCTTTCGAAGGT 60.030 45.455 9.20 0.00 0.00 3.50
333 334 2.030007 TGCTCCAAAATGCTTTCGAAGG 60.030 45.455 2.35 2.35 0.00 3.46
334 335 3.287312 TGCTCCAAAATGCTTTCGAAG 57.713 42.857 0.00 0.00 0.00 3.79
335 336 3.724508 TTGCTCCAAAATGCTTTCGAA 57.275 38.095 0.00 0.00 0.00 3.71
336 337 3.577667 CATTGCTCCAAAATGCTTTCGA 58.422 40.909 0.00 0.00 0.00 3.71
337 338 2.669434 CCATTGCTCCAAAATGCTTTCG 59.331 45.455 0.00 0.00 34.35 3.46
338 339 3.667360 ACCATTGCTCCAAAATGCTTTC 58.333 40.909 0.00 0.00 34.35 2.62
339 340 3.775261 ACCATTGCTCCAAAATGCTTT 57.225 38.095 0.00 0.00 34.35 3.51
340 341 3.775261 AACCATTGCTCCAAAATGCTT 57.225 38.095 0.00 0.00 34.35 3.91
341 342 3.775261 AAACCATTGCTCCAAAATGCT 57.225 38.095 0.00 0.00 34.35 3.79
342 343 6.499234 AATAAAACCATTGCTCCAAAATGC 57.501 33.333 0.00 0.00 34.35 3.56
376 377 4.129380 TGAGATCATATTTGTGGAAGCCG 58.871 43.478 0.00 0.00 0.00 5.52
403 404 8.560355 AAGGTTCTAAGTGTTTGCAAATTTTT 57.440 26.923 16.21 11.81 0.00 1.94
422 423 8.696410 TTTGTGATAAACTTTGACAAAGGTTC 57.304 30.769 29.67 19.31 44.82 3.62
473 474 5.538118 TGAGTTCGAGCTCAAATTAGTTCA 58.462 37.500 27.10 3.15 41.93 3.18
589 591 6.938596 TCCTAGTTTTTAAGGACTTTGCTACC 59.061 38.462 0.00 0.00 36.97 3.18
604 606 7.004086 TGACAATTGTGAGGATCCTAGTTTTT 58.996 34.615 17.58 3.56 0.00 1.94
609 611 4.872691 GTGTGACAATTGTGAGGATCCTAG 59.127 45.833 17.58 1.55 0.00 3.02
669 678 9.477484 GTCATCTCCACGTCACTAAATTTATAT 57.523 33.333 0.00 0.00 0.00 0.86
688 697 6.017934 TGCTCAACAACTAAACTTGTCATCTC 60.018 38.462 0.00 0.00 33.03 2.75
689 698 5.822519 TGCTCAACAACTAAACTTGTCATCT 59.177 36.000 0.00 0.00 33.03 2.90
694 703 6.639632 ATCATGCTCAACAACTAAACTTGT 57.360 33.333 0.00 0.00 35.83 3.16
845 1045 8.853077 TTTCTTCTGATGATAAGTGTCACATT 57.147 30.769 5.62 0.00 0.00 2.71
969 1186 3.549873 GCAAGAGCTAGAACTTGATCGAC 59.450 47.826 23.76 9.35 43.98 4.20
979 1196 1.915078 GCAGGGGGCAAGAGCTAGAA 61.915 60.000 0.00 0.00 43.97 2.10
980 1197 2.370445 GCAGGGGGCAAGAGCTAGA 61.370 63.158 0.00 0.00 43.97 2.43
1275 1514 4.162690 ACGCCGGGAAGGATGAGC 62.163 66.667 2.18 0.00 45.00 4.26
1431 1670 3.864921 GCCAATCTGTAACAACGGTCTCT 60.865 47.826 0.00 0.00 0.00 3.10
1524 1763 4.393155 AGCATGGCCTCGCACGAA 62.393 61.111 17.62 0.00 0.00 3.85
1582 1821 1.265635 CATCCTCTCGTCGCCTCTTAG 59.734 57.143 0.00 0.00 0.00 2.18
1585 1824 1.826054 CCATCCTCTCGTCGCCTCT 60.826 63.158 0.00 0.00 0.00 3.69
2673 2918 0.364515 GTACGAAAGCCAACGCGTAG 59.635 55.000 14.46 8.78 39.53 3.51
2705 2950 1.447838 GACAGGAAGATGCGCGGAA 60.448 57.895 3.18 0.00 0.00 4.30
2706 2951 2.184322 GACAGGAAGATGCGCGGA 59.816 61.111 8.83 5.00 0.00 5.54
2707 2952 2.892425 GGACAGGAAGATGCGCGG 60.892 66.667 8.83 0.00 0.00 6.46
2708 2953 1.522355 ATGGACAGGAAGATGCGCG 60.522 57.895 0.00 0.00 0.00 6.86
2710 2970 0.178767 TCCATGGACAGGAAGATGCG 59.821 55.000 11.44 0.00 30.71 4.73
2712 2972 4.760530 TTAGTCCATGGACAGGAAGATG 57.239 45.455 39.38 0.00 46.76 2.90
2715 2976 6.000219 CCAATATTAGTCCATGGACAGGAAG 59.000 44.000 39.38 23.89 46.76 3.46
2716 2977 5.669904 TCCAATATTAGTCCATGGACAGGAA 59.330 40.000 39.38 29.97 46.76 3.36
2762 3024 9.438163 ACCTTCACATCCAAATCCAATATTTAT 57.562 29.630 0.00 0.00 0.00 1.40
2828 3095 5.363562 TGATCCATGTCTGCTTCAGTTAT 57.636 39.130 0.00 0.00 32.61 1.89
2832 3099 4.196971 TGATTGATCCATGTCTGCTTCAG 58.803 43.478 0.00 0.00 0.00 3.02
2917 3187 5.157940 AGAGAAAAGCTGAGCAATACAGA 57.842 39.130 7.39 0.00 37.54 3.41
2918 3188 6.760298 TGATAGAGAAAAGCTGAGCAATACAG 59.240 38.462 7.39 0.00 38.27 2.74
2920 3190 7.727331 ATGATAGAGAAAAGCTGAGCAATAC 57.273 36.000 7.39 0.00 0.00 1.89
2946 3216 2.886523 TCAGCAAATGAAGTTGTCTGGG 59.113 45.455 11.89 0.00 35.33 4.45
2975 3245 9.956640 TGTTTAAAATTCATCCCAAATGCTAAT 57.043 25.926 0.00 0.00 0.00 1.73
2978 3248 8.732531 CATTGTTTAAAATTCATCCCAAATGCT 58.267 29.630 0.00 0.00 0.00 3.79
2979 3249 8.513774 ACATTGTTTAAAATTCATCCCAAATGC 58.486 29.630 0.00 0.00 0.00 3.56
3221 3497 7.915397 CACATGGGCATTTGTACTAGTTATTTC 59.085 37.037 0.00 0.00 0.00 2.17
3222 3498 7.396055 ACACATGGGCATTTGTACTAGTTATTT 59.604 33.333 0.00 0.00 30.66 1.40
3243 3519 1.184322 TTCCGCCCAATGCAACACAT 61.184 50.000 0.00 0.00 42.30 3.21
3246 3522 0.465705 TTTTTCCGCCCAATGCAACA 59.534 45.000 0.00 0.00 41.33 3.33
3290 3567 7.946219 TGGATATAAGAAATGGTGCTTGATGAT 59.054 33.333 0.00 0.00 0.00 2.45
3373 3650 0.325933 TGGCTCCTTCACATCCACAG 59.674 55.000 0.00 0.00 0.00 3.66
3596 3892 8.898761 TCTTGCTTTCAAAAAGTATTCACAGTA 58.101 29.630 1.78 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.