Multiple sequence alignment - TraesCS1A01G328200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G328200 chr1A 100.000 6041 0 0 879 6919 517405413 517399373 0.000000e+00 11156.0
1 TraesCS1A01G328200 chr1A 100.000 440 0 0 1 440 517406291 517405852 0.000000e+00 813.0
2 TraesCS1A01G328200 chr1A 94.787 422 17 2 1443 1864 232827726 232828142 0.000000e+00 652.0
3 TraesCS1A01G328200 chr1A 83.801 321 23 9 884 1203 232827321 232827613 1.900000e-70 278.0
4 TraesCS1A01G328200 chr1D 93.304 4122 122 46 2862 6919 421026799 421022768 0.000000e+00 5941.0
5 TraesCS1A01G328200 chr1D 91.769 1385 62 16 1388 2765 421028373 421027034 0.000000e+00 1879.0
6 TraesCS1A01G328200 chr1D 87.213 610 44 14 920 1526 421028840 421028262 0.000000e+00 664.0
7 TraesCS1A01G328200 chr1D 90.987 233 14 6 123 354 421029241 421029015 2.420000e-79 307.0
8 TraesCS1A01G328200 chr1D 96.117 103 3 1 2763 2865 421026992 421026891 4.290000e-37 167.0
9 TraesCS1A01G328200 chr1B 88.054 1942 114 44 4807 6701 570026931 570025061 0.000000e+00 2193.0
10 TraesCS1A01G328200 chr1B 90.250 1682 98 19 1094 2765 570030427 570028802 0.000000e+00 2137.0
11 TraesCS1A01G328200 chr1B 95.876 1261 37 7 2763 4016 570028760 570027508 0.000000e+00 2026.0
12 TraesCS1A01G328200 chr1B 88.444 450 44 5 4107 4555 570027467 570027025 2.840000e-148 536.0
13 TraesCS1A01G328200 chr1B 93.919 148 9 0 920 1067 570030577 570030430 2.510000e-54 224.0
14 TraesCS1A01G328200 chr1B 97.917 96 1 1 6825 6919 570024811 570024716 1.540000e-36 165.0
15 TraesCS1A01G328200 chr1B 92.157 51 3 1 1477 1527 570030156 570030107 3.460000e-08 71.3
16 TraesCS1A01G328200 chr3A 93.853 423 21 1 1442 1864 71337766 71338183 3.520000e-177 632.0
17 TraesCS1A01G328200 chr3A 78.607 402 52 15 884 1283 71337362 71337731 1.160000e-57 235.0
18 TraesCS1A01G328200 chr5D 87.980 391 42 2 2926 3313 342681 343069 2.270000e-124 457.0
19 TraesCS1A01G328200 chr2D 78.251 446 46 18 5702 6122 628941083 628940664 8.970000e-59 239.0
20 TraesCS1A01G328200 chr6B 89.175 194 8 5 884 1065 76914497 76914689 5.400000e-56 230.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G328200 chr1A 517399373 517406291 6918 True 5984.500000 11156 100.000000 1 6919 2 chr1A.!!$R1 6918
1 TraesCS1A01G328200 chr1A 232827321 232828142 821 False 465.000000 652 89.294000 884 1864 2 chr1A.!!$F1 980
2 TraesCS1A01G328200 chr1D 421022768 421029241 6473 True 1791.600000 5941 91.878000 123 6919 5 chr1D.!!$R1 6796
3 TraesCS1A01G328200 chr1B 570024716 570030577 5861 True 1050.328571 2193 92.373857 920 6919 7 chr1B.!!$R1 5999
4 TraesCS1A01G328200 chr3A 71337362 71338183 821 False 433.500000 632 86.230000 884 1864 2 chr3A.!!$F1 980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 344 0.178918 TCAAAAATCCCCCACACCCC 60.179 55.0 0.00 0.0 0.00 4.95 F
984 997 0.245539 CAGCCAAGGTGGATTTGCAG 59.754 55.0 0.00 0.0 40.96 4.41 F
1223 1237 0.175760 GTGTCCTGATTCCGCTGCTA 59.824 55.0 0.00 0.0 0.00 3.49 F
2418 2482 0.106918 TGCCGGACCATTACAATCCC 60.107 55.0 5.05 0.0 0.00 3.85 F
2419 2483 0.182775 GCCGGACCATTACAATCCCT 59.817 55.0 5.05 0.0 0.00 4.20 F
3252 3454 1.041447 TAGCTAGGGACCACGAAGGC 61.041 60.0 0.00 0.0 43.14 4.35 F
4197 4411 2.322355 AGGACTGCGATGAGGAATTG 57.678 50.0 0.00 0.0 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1204 1218 0.175760 TAGCAGCGGAATCAGGACAC 59.824 55.000 0.00 0.00 0.00 3.67 R
2240 2295 1.097547 GTGTGCTGCAGAAGGTGTGT 61.098 55.000 20.43 0.00 0.00 3.72 R
3034 3236 0.651031 GCGACAACCGGCTTAGATTC 59.349 55.000 0.00 0.00 39.04 2.52 R
3252 3454 2.094675 CACCTGCATGTTAGGGGAAAG 58.905 52.381 18.48 3.94 41.42 2.62 R
4168 4382 2.472695 TCGCAGTCCTTTGCAGTATT 57.527 45.000 0.00 0.00 44.28 1.89 R
4867 5108 4.336889 TGGACAAGACTACCACAAGAAG 57.663 45.455 0.00 0.00 0.00 2.85 R
6014 6288 0.170561 CTCGACTGTACAACCCTCGG 59.829 60.000 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.393800 TGGCTGAAGAAAAGAGACTTCG 58.606 45.455 0.00 0.00 43.46 3.79
22 23 3.069586 TGGCTGAAGAAAAGAGACTTCGA 59.930 43.478 0.00 0.00 43.46 3.71
23 24 3.677596 GGCTGAAGAAAAGAGACTTCGAG 59.322 47.826 0.00 0.00 43.46 4.04
24 25 3.122780 GCTGAAGAAAAGAGACTTCGAGC 59.877 47.826 0.00 0.00 43.46 5.03
25 26 3.654414 TGAAGAAAAGAGACTTCGAGCC 58.346 45.455 0.00 0.00 43.46 4.70
26 27 2.355717 AGAAAAGAGACTTCGAGCCG 57.644 50.000 0.00 0.00 0.00 5.52
27 28 1.614413 AGAAAAGAGACTTCGAGCCGT 59.386 47.619 0.00 0.00 0.00 5.68
28 29 2.818432 AGAAAAGAGACTTCGAGCCGTA 59.182 45.455 0.00 0.00 0.00 4.02
29 30 2.633199 AAAGAGACTTCGAGCCGTAC 57.367 50.000 0.00 0.00 0.00 3.67
30 31 0.810016 AAGAGACTTCGAGCCGTACC 59.190 55.000 0.00 0.00 0.00 3.34
31 32 0.322277 AGAGACTTCGAGCCGTACCA 60.322 55.000 0.00 0.00 0.00 3.25
32 33 0.179169 GAGACTTCGAGCCGTACCAC 60.179 60.000 0.00 0.00 0.00 4.16
33 34 0.608582 AGACTTCGAGCCGTACCACT 60.609 55.000 0.00 0.00 0.00 4.00
34 35 0.243095 GACTTCGAGCCGTACCACTT 59.757 55.000 0.00 0.00 0.00 3.16
35 36 0.677842 ACTTCGAGCCGTACCACTTT 59.322 50.000 0.00 0.00 0.00 2.66
36 37 1.888512 ACTTCGAGCCGTACCACTTTA 59.111 47.619 0.00 0.00 0.00 1.85
37 38 2.257034 CTTCGAGCCGTACCACTTTAC 58.743 52.381 0.00 0.00 0.00 2.01
38 39 1.538047 TCGAGCCGTACCACTTTACT 58.462 50.000 0.00 0.00 0.00 2.24
39 40 2.710377 TCGAGCCGTACCACTTTACTA 58.290 47.619 0.00 0.00 0.00 1.82
40 41 2.420022 TCGAGCCGTACCACTTTACTAC 59.580 50.000 0.00 0.00 0.00 2.73
41 42 2.789092 CGAGCCGTACCACTTTACTACG 60.789 54.545 0.00 0.00 34.37 3.51
42 43 2.420022 GAGCCGTACCACTTTACTACGA 59.580 50.000 0.00 0.00 36.23 3.43
43 44 2.421424 AGCCGTACCACTTTACTACGAG 59.579 50.000 0.00 0.00 36.23 4.18
44 45 2.790387 CCGTACCACTTTACTACGAGC 58.210 52.381 0.00 0.00 36.23 5.03
45 46 2.478539 CCGTACCACTTTACTACGAGCC 60.479 54.545 0.00 0.00 36.23 4.70
46 47 2.478539 CGTACCACTTTACTACGAGCCC 60.479 54.545 0.00 0.00 36.23 5.19
47 48 1.934410 ACCACTTTACTACGAGCCCT 58.066 50.000 0.00 0.00 0.00 5.19
48 49 3.091633 ACCACTTTACTACGAGCCCTA 57.908 47.619 0.00 0.00 0.00 3.53
49 50 3.022406 ACCACTTTACTACGAGCCCTAG 58.978 50.000 0.00 0.00 0.00 3.02
50 51 2.361438 CCACTTTACTACGAGCCCTAGG 59.639 54.545 0.06 0.06 0.00 3.02
51 52 2.361438 CACTTTACTACGAGCCCTAGGG 59.639 54.545 24.89 24.89 38.57 3.53
52 53 2.243221 ACTTTACTACGAGCCCTAGGGA 59.757 50.000 33.21 9.18 37.50 4.20
53 54 3.117208 ACTTTACTACGAGCCCTAGGGAT 60.117 47.826 33.21 27.84 37.50 3.85
54 55 2.581216 TACTACGAGCCCTAGGGATG 57.419 55.000 33.21 21.21 37.50 3.51
55 56 0.828343 ACTACGAGCCCTAGGGATGC 60.828 60.000 33.21 16.34 37.50 3.91
56 57 1.867919 CTACGAGCCCTAGGGATGCG 61.868 65.000 33.21 28.90 37.50 4.73
57 58 4.671569 CGAGCCCTAGGGATGCGC 62.672 72.222 33.21 16.53 37.50 6.09
58 59 3.237741 GAGCCCTAGGGATGCGCT 61.238 66.667 33.21 20.39 37.50 5.92
59 60 1.908793 GAGCCCTAGGGATGCGCTA 60.909 63.158 33.21 0.00 37.50 4.26
60 61 1.882989 GAGCCCTAGGGATGCGCTAG 61.883 65.000 33.21 10.52 43.62 3.42
61 62 1.908793 GCCCTAGGGATGCGCTAGA 60.909 63.158 33.21 0.00 45.80 2.43
62 63 1.882989 GCCCTAGGGATGCGCTAGAG 61.883 65.000 33.21 7.65 45.80 2.43
63 64 0.251386 CCCTAGGGATGCGCTAGAGA 60.251 60.000 24.99 0.00 45.80 3.10
64 65 1.618345 CCCTAGGGATGCGCTAGAGAT 60.618 57.143 24.99 0.00 45.80 2.75
65 66 2.357257 CCCTAGGGATGCGCTAGAGATA 60.357 54.545 24.99 0.00 45.80 1.98
66 67 2.685897 CCTAGGGATGCGCTAGAGATAC 59.314 54.545 9.73 0.00 45.80 2.24
67 68 2.595750 AGGGATGCGCTAGAGATACT 57.404 50.000 9.73 0.00 0.00 2.12
68 69 2.442413 AGGGATGCGCTAGAGATACTC 58.558 52.381 9.73 0.00 0.00 2.59
69 70 2.041081 AGGGATGCGCTAGAGATACTCT 59.959 50.000 9.73 6.53 43.83 3.24
70 71 2.823154 GGGATGCGCTAGAGATACTCTT 59.177 50.000 9.73 0.00 41.50 2.85
71 72 3.257127 GGGATGCGCTAGAGATACTCTTT 59.743 47.826 9.73 0.00 41.50 2.52
72 73 4.459685 GGGATGCGCTAGAGATACTCTTTA 59.540 45.833 9.73 0.00 41.50 1.85
73 74 5.047943 GGGATGCGCTAGAGATACTCTTTAA 60.048 44.000 9.73 0.00 41.50 1.52
74 75 6.448006 GGATGCGCTAGAGATACTCTTTAAA 58.552 40.000 9.73 0.00 41.50 1.52
75 76 6.924060 GGATGCGCTAGAGATACTCTTTAAAA 59.076 38.462 9.73 0.00 41.50 1.52
76 77 7.438459 GGATGCGCTAGAGATACTCTTTAAAAA 59.562 37.037 9.73 0.00 41.50 1.94
93 94 3.686916 AAAAAGAGAGAACGGGAGAGG 57.313 47.619 0.00 0.00 0.00 3.69
94 95 2.312424 AAAGAGAGAACGGGAGAGGT 57.688 50.000 0.00 0.00 0.00 3.85
95 96 1.551452 AAGAGAGAACGGGAGAGGTG 58.449 55.000 0.00 0.00 0.00 4.00
96 97 0.699399 AGAGAGAACGGGAGAGGTGA 59.301 55.000 0.00 0.00 0.00 4.02
97 98 1.075698 AGAGAGAACGGGAGAGGTGAA 59.924 52.381 0.00 0.00 0.00 3.18
98 99 1.893801 GAGAGAACGGGAGAGGTGAAA 59.106 52.381 0.00 0.00 0.00 2.69
99 100 1.619332 AGAGAACGGGAGAGGTGAAAC 59.381 52.381 0.00 0.00 0.00 2.78
100 101 0.317479 AGAACGGGAGAGGTGAAACG 59.683 55.000 0.00 0.00 38.12 3.60
101 102 0.316204 GAACGGGAGAGGTGAAACGA 59.684 55.000 0.00 0.00 38.12 3.85
102 103 0.754472 AACGGGAGAGGTGAAACGAA 59.246 50.000 0.00 0.00 38.12 3.85
103 104 0.754472 ACGGGAGAGGTGAAACGAAA 59.246 50.000 0.00 0.00 38.12 3.46
104 105 1.270147 ACGGGAGAGGTGAAACGAAAG 60.270 52.381 0.00 0.00 38.12 2.62
105 106 1.157585 GGGAGAGGTGAAACGAAAGC 58.842 55.000 0.00 0.00 38.12 3.51
106 107 1.157585 GGAGAGGTGAAACGAAAGCC 58.842 55.000 0.00 0.00 38.12 4.35
107 108 1.542547 GGAGAGGTGAAACGAAAGCCA 60.543 52.381 0.00 0.00 38.12 4.75
108 109 2.427506 GAGAGGTGAAACGAAAGCCAT 58.572 47.619 0.00 0.00 38.12 4.40
109 110 3.596214 GAGAGGTGAAACGAAAGCCATA 58.404 45.455 0.00 0.00 38.12 2.74
110 111 3.600388 AGAGGTGAAACGAAAGCCATAG 58.400 45.455 0.00 0.00 38.12 2.23
111 112 3.008049 AGAGGTGAAACGAAAGCCATAGT 59.992 43.478 0.00 0.00 38.12 2.12
112 113 4.222145 AGAGGTGAAACGAAAGCCATAGTA 59.778 41.667 0.00 0.00 38.12 1.82
113 114 4.504858 AGGTGAAACGAAAGCCATAGTAG 58.495 43.478 0.00 0.00 38.12 2.57
114 115 4.222145 AGGTGAAACGAAAGCCATAGTAGA 59.778 41.667 0.00 0.00 38.12 2.59
115 116 4.933400 GGTGAAACGAAAGCCATAGTAGAA 59.067 41.667 0.00 0.00 38.12 2.10
116 117 5.410439 GGTGAAACGAAAGCCATAGTAGAAA 59.590 40.000 0.00 0.00 38.12 2.52
117 118 6.072893 GGTGAAACGAAAGCCATAGTAGAAAA 60.073 38.462 0.00 0.00 38.12 2.29
118 119 7.357303 GTGAAACGAAAGCCATAGTAGAAAAA 58.643 34.615 0.00 0.00 0.00 1.94
140 141 6.581171 AAAAGAAAGATTTAGAGCCACAGG 57.419 37.500 0.00 0.00 0.00 4.00
150 151 3.971245 AGAGCCACAGGTAAAGAAGAG 57.029 47.619 0.00 0.00 0.00 2.85
151 152 3.511477 AGAGCCACAGGTAAAGAAGAGA 58.489 45.455 0.00 0.00 0.00 3.10
152 153 3.513515 AGAGCCACAGGTAAAGAAGAGAG 59.486 47.826 0.00 0.00 0.00 3.20
153 154 2.569404 AGCCACAGGTAAAGAAGAGAGG 59.431 50.000 0.00 0.00 0.00 3.69
155 156 3.368948 GCCACAGGTAAAGAAGAGAGGAG 60.369 52.174 0.00 0.00 0.00 3.69
156 157 4.090090 CCACAGGTAAAGAAGAGAGGAGA 58.910 47.826 0.00 0.00 0.00 3.71
157 158 4.528596 CCACAGGTAAAGAAGAGAGGAGAA 59.471 45.833 0.00 0.00 0.00 2.87
169 170 1.407258 AGAGGAGAAGATTTCGAGCCG 59.593 52.381 0.00 0.00 34.02 5.52
170 171 1.135333 GAGGAGAAGATTTCGAGCCGT 59.865 52.381 0.00 0.00 34.02 5.68
182 183 2.161855 TCGAGCCGTTCCACTTTACTA 58.838 47.619 0.00 0.00 0.00 1.82
184 185 2.094854 CGAGCCGTTCCACTTTACTACT 60.095 50.000 0.00 0.00 0.00 2.57
186 187 4.419280 GAGCCGTTCCACTTTACTACTAC 58.581 47.826 0.00 0.00 0.00 2.73
187 188 3.119708 AGCCGTTCCACTTTACTACTACG 60.120 47.826 0.00 0.00 0.00 3.51
188 189 3.119849 GCCGTTCCACTTTACTACTACGA 60.120 47.826 0.00 0.00 0.00 3.43
189 190 4.656041 CCGTTCCACTTTACTACTACGAG 58.344 47.826 0.00 0.00 0.00 4.18
224 225 6.502136 AAAGAAAGAGGGAAAGCGATTAAG 57.498 37.500 0.00 0.00 0.00 1.85
229 230 6.442513 AAGAGGGAAAGCGATTAAGAATTG 57.557 37.500 0.00 0.00 0.00 2.32
250 251 3.437795 AGGACGCGACGGTGGTAG 61.438 66.667 15.93 0.00 0.00 3.18
333 334 1.095600 GACCTCCCGCTCAAAAATCC 58.904 55.000 0.00 0.00 0.00 3.01
334 335 0.323451 ACCTCCCGCTCAAAAATCCC 60.323 55.000 0.00 0.00 0.00 3.85
335 336 1.037579 CCTCCCGCTCAAAAATCCCC 61.038 60.000 0.00 0.00 0.00 4.81
336 337 1.000145 TCCCGCTCAAAAATCCCCC 60.000 57.895 0.00 0.00 0.00 5.40
337 338 1.304879 CCCGCTCAAAAATCCCCCA 60.305 57.895 0.00 0.00 0.00 4.96
338 339 1.604147 CCCGCTCAAAAATCCCCCAC 61.604 60.000 0.00 0.00 0.00 4.61
339 340 0.897863 CCGCTCAAAAATCCCCCACA 60.898 55.000 0.00 0.00 0.00 4.17
340 341 0.243636 CGCTCAAAAATCCCCCACAC 59.756 55.000 0.00 0.00 0.00 3.82
341 342 0.608130 GCTCAAAAATCCCCCACACC 59.392 55.000 0.00 0.00 0.00 4.16
342 343 1.266178 CTCAAAAATCCCCCACACCC 58.734 55.000 0.00 0.00 0.00 4.61
343 344 0.178918 TCAAAAATCCCCCACACCCC 60.179 55.000 0.00 0.00 0.00 4.95
344 345 0.472734 CAAAAATCCCCCACACCCCA 60.473 55.000 0.00 0.00 0.00 4.96
898 899 1.972223 GCGCCTAGCTCGATCCCTA 60.972 63.158 0.00 0.00 44.04 3.53
984 997 0.245539 CAGCCAAGGTGGATTTGCAG 59.754 55.000 0.00 0.00 40.96 4.41
1052 1065 2.985847 GTGCTCGCCCTTTTGCCT 60.986 61.111 0.00 0.00 0.00 4.75
1067 1080 2.511600 CCTCCACGACCGATTGGC 60.512 66.667 0.00 0.00 39.70 4.52
1145 1159 4.079253 ACTGTGTTGTTTTCTTGGTCTGT 58.921 39.130 0.00 0.00 0.00 3.41
1146 1160 4.522789 ACTGTGTTGTTTTCTTGGTCTGTT 59.477 37.500 0.00 0.00 0.00 3.16
1204 1218 4.323477 TCGGAAGGTGGGGTTGCG 62.323 66.667 0.00 0.00 39.80 4.85
1218 1232 2.032634 TTGCGTGTCCTGATTCCGC 61.033 57.895 0.00 0.00 44.27 5.54
1219 1233 2.125512 GCGTGTCCTGATTCCGCT 60.126 61.111 0.00 0.00 41.06 5.52
1220 1234 2.456119 GCGTGTCCTGATTCCGCTG 61.456 63.158 0.00 0.00 41.06 5.18
1221 1235 2.456119 CGTGTCCTGATTCCGCTGC 61.456 63.158 0.00 0.00 0.00 5.25
1223 1237 0.175760 GTGTCCTGATTCCGCTGCTA 59.824 55.000 0.00 0.00 0.00 3.49
1257 1271 4.934602 TGTTCATATGCGTCACAGAATTCA 59.065 37.500 8.44 0.00 0.00 2.57
1259 1273 6.093909 TGTTCATATGCGTCACAGAATTCATT 59.906 34.615 8.44 0.00 0.00 2.57
1260 1274 6.291067 TCATATGCGTCACAGAATTCATTC 57.709 37.500 8.44 0.00 37.06 2.67
1323 1341 1.619526 GCACGCGTCGGTGTATTTCA 61.620 55.000 9.86 0.00 40.08 2.69
1332 1350 3.054166 TCGGTGTATTTCACTTCACACG 58.946 45.455 0.00 0.00 45.50 4.49
1333 1351 2.411031 CGGTGTATTTCACTTCACACGC 60.411 50.000 0.00 0.00 45.50 5.34
1334 1352 2.411031 GGTGTATTTCACTTCACACGCG 60.411 50.000 3.53 3.53 45.50 6.01
1335 1353 2.220133 GTGTATTTCACTTCACACGCGT 59.780 45.455 5.58 5.58 43.13 6.01
1336 1354 2.473609 TGTATTTCACTTCACACGCGTC 59.526 45.455 9.86 0.00 0.00 5.19
1337 1355 0.506932 ATTTCACTTCACACGCGTCG 59.493 50.000 9.86 8.08 0.00 5.12
1392 1411 6.037830 TGCTCTCTGTTTAAACTTTGTACCAC 59.962 38.462 18.72 2.31 0.00 4.16
1414 1433 4.941873 ACTTTGTTCCGAGTTCTGAAGTTT 59.058 37.500 0.00 0.00 0.00 2.66
1421 1469 5.235516 TCCGAGTTCTGAAGTTTTACCATC 58.764 41.667 0.00 0.00 0.00 3.51
1435 1483 6.486993 AGTTTTACCATCTTGTTCTGAGTTCC 59.513 38.462 0.00 0.00 0.00 3.62
1436 1484 5.560722 TTACCATCTTGTTCTGAGTTCCA 57.439 39.130 0.00 0.00 0.00 3.53
1439 1487 4.823989 ACCATCTTGTTCTGAGTTCCAAAG 59.176 41.667 0.00 0.00 0.00 2.77
1440 1488 4.320788 CCATCTTGTTCTGAGTTCCAAAGC 60.321 45.833 0.00 0.00 0.00 3.51
1472 1520 1.795286 GTTCCGAGTTCTGAAGCTGTG 59.205 52.381 0.00 0.00 0.00 3.66
1473 1521 1.040646 TCCGAGTTCTGAAGCTGTGT 58.959 50.000 0.00 0.00 0.00 3.72
1572 1620 1.566231 CCAAGCCTATTTGGGAGGAGT 59.434 52.381 0.00 0.00 43.16 3.85
1894 1947 7.039714 TGTTCTCTGCACTAGAAATGAGTAGAA 60.040 37.037 8.05 0.00 34.86 2.10
1895 1948 7.094508 TCTCTGCACTAGAAATGAGTAGAAG 57.905 40.000 0.00 0.00 34.32 2.85
1919 1974 6.488683 AGAGATGTAGTAGAGTGATAGTTGGC 59.511 42.308 0.00 0.00 0.00 4.52
2017 2072 2.165167 ACTCAAACACCAGATGGCATG 58.835 47.619 3.81 0.00 39.32 4.06
2028 2083 6.210385 ACACCAGATGGCATGTTTAACATTTA 59.790 34.615 3.81 0.00 35.13 1.40
2057 2112 8.922676 ATGACTAATCACTGTAAACAACGTAAG 58.077 33.333 0.00 0.00 37.79 2.34
2059 2114 5.352643 AATCACTGTAAACAACGTAAGGC 57.647 39.130 0.00 0.00 46.39 4.35
2089 2144 9.474920 CAAGTTAATTTTATTTTCCTGAGCACA 57.525 29.630 0.00 0.00 0.00 4.57
2153 2208 4.517453 TCTCGAGTTACCCAAAAACCATTG 59.483 41.667 13.13 0.00 0.00 2.82
2158 2213 6.535508 CGAGTTACCCAAAAACCATTGAAAAA 59.464 34.615 0.00 0.00 31.84 1.94
2170 2225 6.983474 ACCATTGAAAAACCTGAAACAAAG 57.017 33.333 0.00 0.00 0.00 2.77
2240 2295 5.923733 TGTTTGGCAGAAAGGAGTAAAAA 57.076 34.783 0.00 0.00 0.00 1.94
2300 2355 0.895100 TGATGGGCCTGCAACTCAAC 60.895 55.000 4.53 0.00 0.00 3.18
2314 2369 4.377841 GCAACTCAACTACTCAATGCTGTC 60.378 45.833 0.00 0.00 0.00 3.51
2316 2371 4.564041 ACTCAACTACTCAATGCTGTCTG 58.436 43.478 0.00 0.00 0.00 3.51
2370 2434 1.002544 GGCCTCTCTAGTTGCTGTGTT 59.997 52.381 0.00 0.00 0.00 3.32
2373 2437 2.037772 CCTCTCTAGTTGCTGTGTTGGT 59.962 50.000 0.00 0.00 0.00 3.67
2403 2467 1.467342 GCCCTACTTTACTTGTTGCCG 59.533 52.381 0.00 0.00 0.00 5.69
2405 2469 2.289819 CCCTACTTTACTTGTTGCCGGA 60.290 50.000 5.05 0.00 0.00 5.14
2406 2470 2.740447 CCTACTTTACTTGTTGCCGGAC 59.260 50.000 5.05 0.00 0.00 4.79
2407 2471 1.601166 ACTTTACTTGTTGCCGGACC 58.399 50.000 5.05 0.00 0.00 4.46
2408 2472 1.134037 ACTTTACTTGTTGCCGGACCA 60.134 47.619 5.05 0.00 0.00 4.02
2409 2473 2.159382 CTTTACTTGTTGCCGGACCAT 58.841 47.619 5.05 0.00 0.00 3.55
2410 2474 2.279935 TTACTTGTTGCCGGACCATT 57.720 45.000 5.05 0.00 0.00 3.16
2411 2475 3.420300 TTACTTGTTGCCGGACCATTA 57.580 42.857 5.05 0.00 0.00 1.90
2412 2476 1.530323 ACTTGTTGCCGGACCATTAC 58.470 50.000 5.05 0.00 0.00 1.89
2413 2477 1.202830 ACTTGTTGCCGGACCATTACA 60.203 47.619 5.05 0.00 0.00 2.41
2414 2478 1.883275 CTTGTTGCCGGACCATTACAA 59.117 47.619 5.05 2.35 0.00 2.41
2415 2479 2.208132 TGTTGCCGGACCATTACAAT 57.792 45.000 5.05 0.00 0.00 2.71
2416 2480 2.088423 TGTTGCCGGACCATTACAATC 58.912 47.619 5.05 0.00 0.00 2.67
2417 2481 1.404035 GTTGCCGGACCATTACAATCC 59.596 52.381 5.05 0.00 0.00 3.01
2418 2482 0.106918 TGCCGGACCATTACAATCCC 60.107 55.000 5.05 0.00 0.00 3.85
2419 2483 0.182775 GCCGGACCATTACAATCCCT 59.817 55.000 5.05 0.00 0.00 4.20
2420 2484 1.409661 GCCGGACCATTACAATCCCTT 60.410 52.381 5.05 0.00 0.00 3.95
2421 2485 2.948600 GCCGGACCATTACAATCCCTTT 60.949 50.000 5.05 0.00 0.00 3.11
2432 2496 2.435437 ACAATCCCTTTTGCTTGCAACT 59.565 40.909 7.60 0.00 0.00 3.16
2495 2559 4.872691 CCACCAGTGTCTGAATCTGTAATC 59.127 45.833 0.00 0.00 32.44 1.75
2561 2625 7.212274 AGCAATTAATGGTTCCATTATCTTGC 58.788 34.615 32.38 32.38 44.77 4.01
2667 2731 2.420687 GGACACCATCCCTCATCTTGTC 60.421 54.545 0.00 0.00 42.46 3.18
2697 2761 2.027192 GTGCTTGTGAGGGATAAGGTGA 60.027 50.000 0.00 0.00 0.00 4.02
2699 2763 4.037222 TGCTTGTGAGGGATAAGGTGATA 58.963 43.478 0.00 0.00 0.00 2.15
2711 2775 6.240292 GGGATAAGGTGATAATGGACCAATCT 60.240 42.308 0.00 0.00 34.36 2.40
2751 2815 5.838531 AAACAAGTGGATTACGTTTGGAA 57.161 34.783 0.00 0.00 0.00 3.53
2765 2829 5.261216 ACGTTTGGAATTAGGATTGGATGT 58.739 37.500 0.00 0.00 0.00 3.06
2783 2890 3.671008 TGTTGCTCGTACCATACACTT 57.329 42.857 0.00 0.00 0.00 3.16
2894 3096 8.154649 AGTATGAACTTGTGAAAAGTGGTTAG 57.845 34.615 0.00 0.00 29.00 2.34
2896 3098 4.097286 TGAACTTGTGAAAAGTGGTTAGGC 59.903 41.667 0.00 0.00 0.00 3.93
3034 3236 2.284921 TCAGGGAGCAGAGGGGTG 60.285 66.667 0.00 0.00 0.00 4.61
3161 3363 4.326278 CAGTTGTTTGCATCATCTTCATGC 59.674 41.667 0.00 0.00 45.92 4.06
3169 3371 4.095334 TGCATCATCTTCATGCTGTACAAC 59.905 41.667 0.00 0.00 45.90 3.32
3252 3454 1.041447 TAGCTAGGGACCACGAAGGC 61.041 60.000 0.00 0.00 43.14 4.35
3513 3718 6.994421 AGTTCCCAATGACAGGTTAATTTT 57.006 33.333 0.00 0.00 0.00 1.82
3670 3876 7.307989 GCAGCAACACTCTTCTATGAAAGTTAA 60.308 37.037 0.00 0.00 0.00 2.01
3902 4108 6.427547 CCCAAACAGTTTATGTAGTCCGTAAA 59.572 38.462 0.00 0.00 43.00 2.01
4007 4213 6.924060 AGATGCGTACATATTTACTTGGACTC 59.076 38.462 0.00 0.00 36.35 3.36
4089 4303 5.319043 TCTCTTTTACCCATTGTGGTCTT 57.681 39.130 0.73 0.00 39.91 3.01
4168 4382 4.790937 TGCATGCAAGAGGAATATACCAA 58.209 39.130 20.30 0.00 0.00 3.67
4197 4411 2.322355 AGGACTGCGATGAGGAATTG 57.678 50.000 0.00 0.00 0.00 2.32
4212 4426 7.220741 TGAGGAATTGATAGTCGAAGGATAG 57.779 40.000 0.00 0.00 0.00 2.08
4214 4428 7.505923 TGAGGAATTGATAGTCGAAGGATAGAA 59.494 37.037 0.00 0.00 0.00 2.10
4246 4460 7.040686 GGGTTGAAAGTTCAGAAGTTAGCATAA 60.041 37.037 3.53 0.00 38.61 1.90
4395 4609 8.101419 AGTCCCGTCTCTCTAAAACAAATTAAT 58.899 33.333 0.00 0.00 0.00 1.40
4398 4612 9.379791 CCCGTCTCTCTAAAACAAATTAATACT 57.620 33.333 0.00 0.00 0.00 2.12
4498 4713 6.436847 TCAGATCTGCATAAATGGAACCAAAA 59.563 34.615 18.36 0.00 0.00 2.44
4617 4832 5.483685 TTTGCTGGATAGAGTTACACACT 57.516 39.130 0.00 0.00 39.07 3.55
4867 5108 8.362639 TCCGTACTGGTTGATATTAGGTTTATC 58.637 37.037 4.11 0.00 39.52 1.75
5127 5370 6.992715 TGAGGCTGATATACTTAAGCTTTTCC 59.007 38.462 3.20 0.00 35.93 3.13
5189 5432 3.806949 TGAGGGGCTTGATTTACAGTT 57.193 42.857 0.00 0.00 0.00 3.16
5254 5497 1.363807 GGAAAGCAAGCACGCCTTT 59.636 52.632 0.00 0.00 0.00 3.11
5279 5522 9.640963 TTCTCAAACAGTTAGAGCTTACTATTC 57.359 33.333 0.00 0.00 0.00 1.75
5292 5539 7.121315 AGAGCTTACTATTCAATTGGTTTGGAC 59.879 37.037 5.42 0.00 35.92 4.02
5430 5679 6.258727 ACGTGATGTATCAACCAATGAAGATC 59.741 38.462 0.00 0.00 42.54 2.75
5560 5811 6.971340 TGGACAAGAGTTATAGTAGAGTCCT 58.029 40.000 0.00 0.00 42.54 3.85
5561 5812 6.829298 TGGACAAGAGTTATAGTAGAGTCCTG 59.171 42.308 0.00 0.00 42.54 3.86
5562 5813 7.055378 GGACAAGAGTTATAGTAGAGTCCTGA 58.945 42.308 0.00 0.00 39.79 3.86
5563 5814 7.227910 GGACAAGAGTTATAGTAGAGTCCTGAG 59.772 44.444 0.00 0.00 39.79 3.35
5564 5815 7.635648 ACAAGAGTTATAGTAGAGTCCTGAGT 58.364 38.462 0.00 0.00 0.00 3.41
5565 5816 7.771826 ACAAGAGTTATAGTAGAGTCCTGAGTC 59.228 40.741 0.00 0.00 0.00 3.36
5566 5817 6.834107 AGAGTTATAGTAGAGTCCTGAGTCC 58.166 44.000 0.00 0.00 0.00 3.85
5597 5849 3.578282 CCTTTTGTTTTATGCCCACTCCT 59.422 43.478 0.00 0.00 0.00 3.69
5695 5949 7.658261 TGATAGTATTTCCTTGACCATACTCG 58.342 38.462 0.00 0.00 34.82 4.18
5762 6017 0.748450 AAATGATGGCAGGCAATCCG 59.252 50.000 0.00 0.00 37.47 4.18
5804 6059 0.320946 GATTCGGTGTCGGGTTTGGA 60.321 55.000 0.00 0.00 36.95 3.53
5971 6226 1.655484 TACAAGCCATGACATGCGAG 58.345 50.000 10.10 6.51 0.00 5.03
6004 6278 4.704833 ATGCCTCGGCGCAACTGT 62.705 61.111 10.83 0.00 43.24 3.55
6007 6281 4.680237 CCTCGGCGCAACTGTCCA 62.680 66.667 10.83 0.00 0.00 4.02
6014 6288 1.503542 CGCAACTGTCCAAGGCATC 59.496 57.895 0.00 0.00 0.00 3.91
6070 6344 0.036952 CTGGATGCTGAACGGACAGT 60.037 55.000 11.52 0.00 39.73 3.55
6096 6370 5.156608 TGAGAATGTGAGATGACATGTGT 57.843 39.130 1.15 0.00 36.66 3.72
6101 6375 5.929058 ATGTGAGATGACATGTGTAGAGT 57.071 39.130 1.15 0.00 35.17 3.24
6109 6383 3.070018 GACATGTGTAGAGTGCAAAGCT 58.930 45.455 1.15 0.00 0.00 3.74
6164 6438 6.281405 CCATACCGTCTTATTCTTTGCTAGT 58.719 40.000 0.00 0.00 0.00 2.57
6165 6439 6.201044 CCATACCGTCTTATTCTTTGCTAGTG 59.799 42.308 0.00 0.00 0.00 2.74
6166 6440 4.504858 ACCGTCTTATTCTTTGCTAGTGG 58.495 43.478 0.00 0.00 0.00 4.00
6167 6441 3.871594 CCGTCTTATTCTTTGCTAGTGGG 59.128 47.826 0.00 0.00 0.00 4.61
6168 6442 4.382685 CCGTCTTATTCTTTGCTAGTGGGA 60.383 45.833 0.00 0.00 0.00 4.37
6169 6443 5.360591 CGTCTTATTCTTTGCTAGTGGGAT 58.639 41.667 0.00 0.00 0.00 3.85
6402 6681 1.098712 TCACCAACCAACCAAGCGAC 61.099 55.000 0.00 0.00 0.00 5.19
6474 6753 5.309638 TGTGACGATTGTCCTATTTTTCCA 58.690 37.500 10.69 0.00 44.86 3.53
6494 6773 2.100631 GTTGATCGCCGTCCACAGG 61.101 63.158 0.00 0.00 0.00 4.00
6545 6824 2.970974 GCACCAGCTTCGCTTCACC 61.971 63.158 0.00 0.00 36.40 4.02
6600 6879 5.163322 TGCTGACCCTGAATTTTGAAAATGT 60.163 36.000 3.62 0.00 0.00 2.71
6615 6894 5.044558 TGAAAATGTATACGCATCGTAGCA 58.955 37.500 5.34 6.96 45.45 3.49
6622 6910 0.815734 ACGCATCGTAGCAAGGTAGT 59.184 50.000 3.09 0.00 38.73 2.73
6626 6923 2.418197 GCATCGTAGCAAGGTAGTCCAA 60.418 50.000 0.00 0.00 35.89 3.53
6627 6924 3.857052 CATCGTAGCAAGGTAGTCCAAA 58.143 45.455 0.00 0.00 35.89 3.28
6628 6925 4.250464 CATCGTAGCAAGGTAGTCCAAAA 58.750 43.478 0.00 0.00 35.89 2.44
6673 6970 0.598065 AAAATGGTGCACTCGGCTTC 59.402 50.000 17.98 0.00 45.15 3.86
6679 6976 0.947180 GTGCACTCGGCTTCGGTTTA 60.947 55.000 10.32 0.00 45.15 2.01
6698 7055 6.977502 CGGTTTATGCCAATGTTTCATGATAA 59.022 34.615 0.00 0.00 0.00 1.75
6730 7087 5.976458 TCTGAAAACTTGACCTTGCAATTT 58.024 33.333 0.00 0.00 0.00 1.82
6731 7088 7.106439 TCTGAAAACTTGACCTTGCAATTTA 57.894 32.000 0.00 0.00 0.00 1.40
6732 7089 7.202526 TCTGAAAACTTGACCTTGCAATTTAG 58.797 34.615 0.00 0.00 0.00 1.85
6733 7090 6.872920 TGAAAACTTGACCTTGCAATTTAGT 58.127 32.000 0.00 0.00 0.00 2.24
6734 7091 8.001881 TGAAAACTTGACCTTGCAATTTAGTA 57.998 30.769 0.00 0.00 0.00 1.82
6735 7092 8.134895 TGAAAACTTGACCTTGCAATTTAGTAG 58.865 33.333 0.00 0.00 0.00 2.57
6736 7093 7.582667 AAACTTGACCTTGCAATTTAGTAGT 57.417 32.000 0.00 0.00 0.00 2.73
6737 7094 8.685838 AAACTTGACCTTGCAATTTAGTAGTA 57.314 30.769 0.00 0.00 0.00 1.82
6738 7095 7.668525 ACTTGACCTTGCAATTTAGTAGTAC 57.331 36.000 0.00 0.00 0.00 2.73
6768 7125 9.155975 ACAGAAGTAAATTTGCTATCACTAGTG 57.844 33.333 17.17 17.17 0.00 2.74
6769 7126 8.607459 CAGAAGTAAATTTGCTATCACTAGTGG 58.393 37.037 22.48 8.08 0.00 4.00
6770 7127 8.322091 AGAAGTAAATTTGCTATCACTAGTGGT 58.678 33.333 22.48 18.57 0.00 4.16
6781 7138 7.710907 TGCTATCACTAGTGGTAATTTAGCTTG 59.289 37.037 22.28 8.52 0.00 4.01
6815 7174 8.867097 AGAGTACCTCTTAATTTACACAAGTCA 58.133 33.333 0.00 0.00 37.60 3.41
6816 7175 9.654663 GAGTACCTCTTAATTTACACAAGTCAT 57.345 33.333 0.00 0.00 0.00 3.06
6817 7176 9.436957 AGTACCTCTTAATTTACACAAGTCATG 57.563 33.333 0.00 0.00 0.00 3.07
6820 7179 8.157476 ACCTCTTAATTTACACAAGTCATGACT 58.843 33.333 22.89 22.89 44.94 3.41
6821 7180 8.660373 CCTCTTAATTTACACAAGTCATGACTC 58.340 37.037 28.01 1.53 41.58 3.36
6822 7181 9.208022 CTCTTAATTTACACAAGTCATGACTCA 57.792 33.333 28.01 9.05 41.58 3.41
6823 7182 9.725019 TCTTAATTTACACAAGTCATGACTCAT 57.275 29.630 28.01 16.37 41.58 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.069586 TCGAAGTCTCTTTTCTTCAGCCA 59.930 43.478 0.00 0.00 39.70 4.75
1 2 3.654414 TCGAAGTCTCTTTTCTTCAGCC 58.346 45.455 0.00 0.00 39.70 4.85
2 3 3.122780 GCTCGAAGTCTCTTTTCTTCAGC 59.877 47.826 0.00 0.00 39.70 4.26
3 4 3.677596 GGCTCGAAGTCTCTTTTCTTCAG 59.322 47.826 0.00 0.00 39.70 3.02
4 5 3.654414 GGCTCGAAGTCTCTTTTCTTCA 58.346 45.455 0.00 0.00 39.70 3.02
5 6 2.664085 CGGCTCGAAGTCTCTTTTCTTC 59.336 50.000 0.00 0.00 37.34 2.87
6 7 2.036089 ACGGCTCGAAGTCTCTTTTCTT 59.964 45.455 1.50 0.00 0.00 2.52
7 8 1.614413 ACGGCTCGAAGTCTCTTTTCT 59.386 47.619 1.50 0.00 0.00 2.52
8 9 2.067414 ACGGCTCGAAGTCTCTTTTC 57.933 50.000 1.50 0.00 0.00 2.29
9 10 2.352519 GGTACGGCTCGAAGTCTCTTTT 60.353 50.000 1.50 0.00 0.00 2.27
10 11 1.201880 GGTACGGCTCGAAGTCTCTTT 59.798 52.381 1.50 0.00 0.00 2.52
11 12 0.810016 GGTACGGCTCGAAGTCTCTT 59.190 55.000 1.50 0.00 0.00 2.85
12 13 0.322277 TGGTACGGCTCGAAGTCTCT 60.322 55.000 1.50 0.00 0.00 3.10
13 14 0.179169 GTGGTACGGCTCGAAGTCTC 60.179 60.000 1.50 0.00 0.00 3.36
14 15 0.608582 AGTGGTACGGCTCGAAGTCT 60.609 55.000 1.50 0.00 0.00 3.24
15 16 0.243095 AAGTGGTACGGCTCGAAGTC 59.757 55.000 1.50 0.00 0.00 3.01
16 17 0.677842 AAAGTGGTACGGCTCGAAGT 59.322 50.000 1.50 0.00 0.00 3.01
17 18 2.094854 AGTAAAGTGGTACGGCTCGAAG 60.095 50.000 1.50 0.00 0.00 3.79
18 19 1.888512 AGTAAAGTGGTACGGCTCGAA 59.111 47.619 1.50 0.00 0.00 3.71
19 20 1.538047 AGTAAAGTGGTACGGCTCGA 58.462 50.000 1.50 0.00 0.00 4.04
20 21 2.789092 CGTAGTAAAGTGGTACGGCTCG 60.789 54.545 0.00 0.00 36.69 5.03
21 22 2.420022 TCGTAGTAAAGTGGTACGGCTC 59.580 50.000 0.00 0.00 39.95 4.70
22 23 2.421424 CTCGTAGTAAAGTGGTACGGCT 59.579 50.000 0.00 0.00 39.95 5.52
23 24 2.790387 CTCGTAGTAAAGTGGTACGGC 58.210 52.381 0.00 0.00 39.95 5.68
24 25 2.478539 GGCTCGTAGTAAAGTGGTACGG 60.479 54.545 0.00 0.00 39.95 4.02
25 26 2.478539 GGGCTCGTAGTAAAGTGGTACG 60.479 54.545 0.00 0.00 40.69 3.67
26 27 2.757314 AGGGCTCGTAGTAAAGTGGTAC 59.243 50.000 0.00 0.00 0.00 3.34
27 28 3.091633 AGGGCTCGTAGTAAAGTGGTA 57.908 47.619 0.00 0.00 0.00 3.25
28 29 1.934410 AGGGCTCGTAGTAAAGTGGT 58.066 50.000 0.00 0.00 0.00 4.16
29 30 2.361438 CCTAGGGCTCGTAGTAAAGTGG 59.639 54.545 0.00 0.00 0.00 4.00
30 31 2.361438 CCCTAGGGCTCGTAGTAAAGTG 59.639 54.545 16.90 0.00 0.00 3.16
31 32 2.243221 TCCCTAGGGCTCGTAGTAAAGT 59.757 50.000 24.42 0.00 34.68 2.66
32 33 2.941480 TCCCTAGGGCTCGTAGTAAAG 58.059 52.381 24.42 0.00 34.68 1.85
33 34 3.228453 CATCCCTAGGGCTCGTAGTAAA 58.772 50.000 24.42 1.41 34.68 2.01
34 35 2.872732 CATCCCTAGGGCTCGTAGTAA 58.127 52.381 24.42 2.26 34.68 2.24
35 36 1.547223 GCATCCCTAGGGCTCGTAGTA 60.547 57.143 24.42 3.10 34.68 1.82
36 37 0.828343 GCATCCCTAGGGCTCGTAGT 60.828 60.000 24.42 0.00 34.68 2.73
37 38 1.867919 CGCATCCCTAGGGCTCGTAG 61.868 65.000 24.42 9.47 34.68 3.51
38 39 1.901948 CGCATCCCTAGGGCTCGTA 60.902 63.158 24.42 5.66 34.68 3.43
39 40 3.227276 CGCATCCCTAGGGCTCGT 61.227 66.667 24.42 5.97 34.68 4.18
40 41 4.671569 GCGCATCCCTAGGGCTCG 62.672 72.222 24.42 23.73 41.20 5.03
43 44 1.882989 CTCTAGCGCATCCCTAGGGC 61.883 65.000 24.42 11.03 44.31 5.19
44 45 0.251386 TCTCTAGCGCATCCCTAGGG 60.251 60.000 23.22 23.22 35.21 3.53
45 46 1.846007 ATCTCTAGCGCATCCCTAGG 58.154 55.000 11.47 0.06 34.43 3.02
46 47 3.616219 AGTATCTCTAGCGCATCCCTAG 58.384 50.000 11.47 1.58 34.86 3.02
47 48 3.611970 GAGTATCTCTAGCGCATCCCTA 58.388 50.000 11.47 0.00 0.00 3.53
48 49 2.442413 GAGTATCTCTAGCGCATCCCT 58.558 52.381 11.47 0.00 0.00 4.20
49 50 2.931512 GAGTATCTCTAGCGCATCCC 57.068 55.000 11.47 0.00 0.00 3.85
73 74 2.973406 ACCTCTCCCGTTCTCTCTTTTT 59.027 45.455 0.00 0.00 0.00 1.94
74 75 2.300437 CACCTCTCCCGTTCTCTCTTTT 59.700 50.000 0.00 0.00 0.00 2.27
75 76 1.896465 CACCTCTCCCGTTCTCTCTTT 59.104 52.381 0.00 0.00 0.00 2.52
76 77 1.075698 TCACCTCTCCCGTTCTCTCTT 59.924 52.381 0.00 0.00 0.00 2.85
77 78 0.699399 TCACCTCTCCCGTTCTCTCT 59.301 55.000 0.00 0.00 0.00 3.10
78 79 1.546961 TTCACCTCTCCCGTTCTCTC 58.453 55.000 0.00 0.00 0.00 3.20
79 80 1.619332 GTTTCACCTCTCCCGTTCTCT 59.381 52.381 0.00 0.00 0.00 3.10
80 81 1.669211 CGTTTCACCTCTCCCGTTCTC 60.669 57.143 0.00 0.00 0.00 2.87
81 82 0.317479 CGTTTCACCTCTCCCGTTCT 59.683 55.000 0.00 0.00 0.00 3.01
82 83 0.316204 TCGTTTCACCTCTCCCGTTC 59.684 55.000 0.00 0.00 0.00 3.95
83 84 0.754472 TTCGTTTCACCTCTCCCGTT 59.246 50.000 0.00 0.00 0.00 4.44
84 85 0.754472 TTTCGTTTCACCTCTCCCGT 59.246 50.000 0.00 0.00 0.00 5.28
85 86 1.429463 CTTTCGTTTCACCTCTCCCG 58.571 55.000 0.00 0.00 0.00 5.14
86 87 1.157585 GCTTTCGTTTCACCTCTCCC 58.842 55.000 0.00 0.00 0.00 4.30
87 88 1.157585 GGCTTTCGTTTCACCTCTCC 58.842 55.000 0.00 0.00 0.00 3.71
88 89 1.878953 TGGCTTTCGTTTCACCTCTC 58.121 50.000 0.00 0.00 0.00 3.20
89 90 2.568623 ATGGCTTTCGTTTCACCTCT 57.431 45.000 0.00 0.00 0.00 3.69
90 91 3.335579 ACTATGGCTTTCGTTTCACCTC 58.664 45.455 0.00 0.00 0.00 3.85
91 92 3.418684 ACTATGGCTTTCGTTTCACCT 57.581 42.857 0.00 0.00 0.00 4.00
92 93 4.501071 TCTACTATGGCTTTCGTTTCACC 58.499 43.478 0.00 0.00 0.00 4.02
93 94 6.476243 TTTCTACTATGGCTTTCGTTTCAC 57.524 37.500 0.00 0.00 0.00 3.18
94 95 7.499321 TTTTTCTACTATGGCTTTCGTTTCA 57.501 32.000 0.00 0.00 0.00 2.69
116 117 6.551227 ACCTGTGGCTCTAAATCTTTCTTTTT 59.449 34.615 0.00 0.00 0.00 1.94
117 118 6.071320 ACCTGTGGCTCTAAATCTTTCTTTT 58.929 36.000 0.00 0.00 0.00 2.27
118 119 5.635120 ACCTGTGGCTCTAAATCTTTCTTT 58.365 37.500 0.00 0.00 0.00 2.52
119 120 5.248380 ACCTGTGGCTCTAAATCTTTCTT 57.752 39.130 0.00 0.00 0.00 2.52
120 121 4.917906 ACCTGTGGCTCTAAATCTTTCT 57.082 40.909 0.00 0.00 0.00 2.52
121 122 6.879458 TCTTTACCTGTGGCTCTAAATCTTTC 59.121 38.462 0.00 0.00 0.00 2.62
130 131 3.511477 TCTCTTCTTTACCTGTGGCTCT 58.489 45.455 0.00 0.00 0.00 4.09
138 139 7.363443 CGAAATCTTCTCCTCTCTTCTTTACCT 60.363 40.741 0.00 0.00 0.00 3.08
140 141 7.540299 TCGAAATCTTCTCCTCTCTTCTTTAC 58.460 38.462 0.00 0.00 0.00 2.01
150 151 1.135333 ACGGCTCGAAATCTTCTCCTC 59.865 52.381 1.50 0.00 0.00 3.71
151 152 1.187087 ACGGCTCGAAATCTTCTCCT 58.813 50.000 1.50 0.00 0.00 3.69
152 153 1.927838 GAACGGCTCGAAATCTTCTCC 59.072 52.381 1.50 0.00 0.00 3.71
153 154 1.927838 GGAACGGCTCGAAATCTTCTC 59.072 52.381 1.50 0.00 0.00 2.87
155 156 1.393883 GTGGAACGGCTCGAAATCTTC 59.606 52.381 1.50 0.00 0.00 2.87
156 157 1.002087 AGTGGAACGGCTCGAAATCTT 59.998 47.619 1.50 0.00 45.86 2.40
157 158 0.608640 AGTGGAACGGCTCGAAATCT 59.391 50.000 1.50 0.00 45.86 2.40
169 170 4.419280 GGCTCGTAGTAGTAAAGTGGAAC 58.581 47.826 0.00 0.00 0.00 3.62
170 171 3.445096 GGGCTCGTAGTAGTAAAGTGGAA 59.555 47.826 0.00 0.00 0.00 3.53
209 210 3.954258 CCCAATTCTTAATCGCTTTCCCT 59.046 43.478 0.00 0.00 0.00 4.20
224 225 2.435938 TCGCGTCCTGCCCAATTC 60.436 61.111 5.77 0.00 42.08 2.17
250 251 3.202706 GGATTGCTTCGGTCGGGC 61.203 66.667 0.00 0.00 0.00 6.13
880 881 1.972223 TAGGGATCGAGCTAGGCGC 60.972 63.158 0.00 0.00 39.57 6.53
881 882 1.587933 GGTAGGGATCGAGCTAGGCG 61.588 65.000 0.00 0.00 0.00 5.52
882 883 0.251430 AGGTAGGGATCGAGCTAGGC 60.251 60.000 0.00 0.00 0.00 3.93
955 968 2.488355 CTTGGCTGCGGCATTCAG 59.512 61.111 21.31 4.96 38.08 3.02
984 997 1.079127 CATGTGGGTGAGGTCGACC 60.079 63.158 27.67 27.67 0.00 4.79
1042 1055 1.971695 GGTCGTGGAGGCAAAAGGG 60.972 63.158 0.00 0.00 0.00 3.95
1096 1109 5.593010 CAATCCAAGGTCCGTAAACAAAAA 58.407 37.500 0.00 0.00 0.00 1.94
1099 1112 2.554893 GCAATCCAAGGTCCGTAAACAA 59.445 45.455 0.00 0.00 0.00 2.83
1102 1115 2.039216 TCAGCAATCCAAGGTCCGTAAA 59.961 45.455 0.00 0.00 0.00 2.01
1145 1159 2.624838 CTGGAGCTGCTGAAAGGAAAAA 59.375 45.455 7.01 0.00 29.53 1.94
1146 1160 2.233271 CTGGAGCTGCTGAAAGGAAAA 58.767 47.619 7.01 0.00 29.53 2.29
1204 1218 0.175760 TAGCAGCGGAATCAGGACAC 59.824 55.000 0.00 0.00 0.00 3.67
1218 1232 9.869844 GCATATGAACATAAACTTTACTAGCAG 57.130 33.333 6.97 0.00 0.00 4.24
1219 1233 8.547894 CGCATATGAACATAAACTTTACTAGCA 58.452 33.333 6.97 0.00 0.00 3.49
1220 1234 8.548721 ACGCATATGAACATAAACTTTACTAGC 58.451 33.333 6.97 0.00 0.00 3.42
1223 1237 8.388103 GTGACGCATATGAACATAAACTTTACT 58.612 33.333 6.97 0.00 0.00 2.24
1257 1271 2.025863 GCCAACTATGCCTGCCTGAAT 61.026 52.381 0.00 0.00 0.00 2.57
1259 1273 1.077501 GCCAACTATGCCTGCCTGA 60.078 57.895 0.00 0.00 0.00 3.86
1260 1274 1.077212 AGCCAACTATGCCTGCCTG 60.077 57.895 0.00 0.00 0.00 4.85
1323 1341 2.947118 TTCTGCGACGCGTGTGAAGT 62.947 55.000 20.70 0.00 0.00 3.01
1332 1350 2.202703 ACGGGTATTCTGCGACGC 60.203 61.111 14.19 14.19 0.00 5.19
1333 1351 0.866061 CAGACGGGTATTCTGCGACG 60.866 60.000 0.00 0.00 34.41 5.12
1334 1352 0.527817 CCAGACGGGTATTCTGCGAC 60.528 60.000 0.00 0.00 39.43 5.19
1335 1353 0.681887 TCCAGACGGGTATTCTGCGA 60.682 55.000 0.00 0.00 39.43 5.10
1336 1354 0.389391 ATCCAGACGGGTATTCTGCG 59.611 55.000 0.00 0.00 39.43 5.18
1337 1355 2.622064 AATCCAGACGGGTATTCTGC 57.378 50.000 0.00 0.00 39.43 4.26
1392 1411 5.485662 AAACTTCAGAACTCGGAACAAAG 57.514 39.130 0.00 0.00 0.00 2.77
1414 1433 5.560722 TGGAACTCAGAACAAGATGGTAA 57.439 39.130 0.00 0.00 0.00 2.85
1421 1469 3.629398 ACAGCTTTGGAACTCAGAACAAG 59.371 43.478 0.00 0.00 0.00 3.16
1472 1520 5.007724 ACTTCAGAACTCGGAACAAAATGAC 59.992 40.000 0.00 0.00 0.00 3.06
1473 1521 5.123227 ACTTCAGAACTCGGAACAAAATGA 58.877 37.500 0.00 0.00 0.00 2.57
1572 1620 3.554960 CCAGAATCACGTCCAACTTCTCA 60.555 47.826 0.00 0.00 0.00 3.27
1810 1863 9.725019 AATGAGTACTGTTAACAAGATCAATGA 57.275 29.630 10.03 0.00 0.00 2.57
1864 1917 3.667497 TTCTAGTGCAGAGAACACCAG 57.333 47.619 6.85 0.00 38.87 4.00
1894 1947 6.488683 GCCAACTATCACTCTACTACATCTCT 59.511 42.308 0.00 0.00 0.00 3.10
1895 1948 6.294286 GGCCAACTATCACTCTACTACATCTC 60.294 46.154 0.00 0.00 0.00 2.75
1919 1974 9.575868 TCTACTATAGAAGAGATGTTAACAGGG 57.424 37.037 14.65 0.00 0.00 4.45
1991 2046 5.127845 TGCCATCTGGTGTTTGAGTTTAAAA 59.872 36.000 0.00 0.00 37.57 1.52
2028 2083 7.225931 ACGTTGTTTACAGTGATTAGTCATGTT 59.774 33.333 0.00 0.00 36.60 2.71
2057 2112 9.358872 CAGGAAAATAAAATTAACTTGAGAGCC 57.641 33.333 0.00 0.00 0.00 4.70
2089 2144 5.584913 TCAAAGAAGACAGGGTATCTCTCT 58.415 41.667 0.00 0.00 0.00 3.10
2148 2203 5.353678 TGCTTTGTTTCAGGTTTTTCAATGG 59.646 36.000 0.00 0.00 0.00 3.16
2153 2208 8.865590 TTAGTATGCTTTGTTTCAGGTTTTTC 57.134 30.769 0.00 0.00 0.00 2.29
2158 2213 7.221450 TGTACTTAGTATGCTTTGTTTCAGGT 58.779 34.615 0.00 0.00 0.00 4.00
2170 2225 4.092968 GGTGTGCTGTTGTACTTAGTATGC 59.907 45.833 0.00 0.00 0.00 3.14
2240 2295 1.097547 GTGTGCTGCAGAAGGTGTGT 61.098 55.000 20.43 0.00 0.00 3.72
2300 2355 4.153117 GGAACAACAGACAGCATTGAGTAG 59.847 45.833 0.00 0.00 0.00 2.57
2373 2437 4.368067 AGTAAAGTAGGGCAGGTCCATAA 58.632 43.478 0.00 0.00 32.16 1.90
2403 2467 3.769300 AGCAAAAGGGATTGTAATGGTCC 59.231 43.478 0.00 0.00 32.80 4.46
2405 2469 4.563374 GCAAGCAAAAGGGATTGTAATGGT 60.563 41.667 0.00 0.00 36.58 3.55
2406 2470 3.934579 GCAAGCAAAAGGGATTGTAATGG 59.065 43.478 0.00 0.00 36.58 3.16
2407 2471 4.567971 TGCAAGCAAAAGGGATTGTAATG 58.432 39.130 0.00 0.00 36.58 1.90
2408 2472 4.888326 TGCAAGCAAAAGGGATTGTAAT 57.112 36.364 0.00 0.00 36.58 1.89
2409 2473 4.100808 AGTTGCAAGCAAAAGGGATTGTAA 59.899 37.500 9.32 0.00 36.63 2.41
2410 2474 3.640967 AGTTGCAAGCAAAAGGGATTGTA 59.359 39.130 9.32 0.00 36.58 2.41
2411 2475 2.435437 AGTTGCAAGCAAAAGGGATTGT 59.565 40.909 9.32 0.00 36.58 2.71
2412 2476 2.803956 CAGTTGCAAGCAAAAGGGATTG 59.196 45.455 9.32 0.00 37.70 2.67
2413 2477 2.699846 TCAGTTGCAAGCAAAAGGGATT 59.300 40.909 9.32 0.00 37.70 3.01
2414 2478 2.036346 GTCAGTTGCAAGCAAAAGGGAT 59.964 45.455 9.32 0.00 37.70 3.85
2415 2479 1.408702 GTCAGTTGCAAGCAAAAGGGA 59.591 47.619 9.32 2.42 37.70 4.20
2416 2480 1.538849 GGTCAGTTGCAAGCAAAAGGG 60.539 52.381 9.32 0.07 37.70 3.95
2417 2481 1.410153 AGGTCAGTTGCAAGCAAAAGG 59.590 47.619 9.32 2.49 37.70 3.11
2418 2482 2.099592 TCAGGTCAGTTGCAAGCAAAAG 59.900 45.455 9.32 5.32 37.70 2.27
2419 2483 2.098614 TCAGGTCAGTTGCAAGCAAAA 58.901 42.857 9.32 0.00 37.70 2.44
2420 2484 1.677576 CTCAGGTCAGTTGCAAGCAAA 59.322 47.619 9.32 0.00 37.70 3.68
2421 2485 1.311859 CTCAGGTCAGTTGCAAGCAA 58.688 50.000 0.00 2.89 0.00 3.91
2432 2496 3.075005 GGCGGCTACCTCAGGTCA 61.075 66.667 0.00 0.00 37.09 4.02
2495 2559 7.681125 ATAACGTCTTCTGCTTAATACTTCG 57.319 36.000 0.00 0.00 0.00 3.79
2561 2625 3.131933 TGGTCACCAAACCAATCAACTTG 59.868 43.478 0.00 0.00 46.26 3.16
2667 2731 5.452078 TCCCTCACAAGCACAAAATTAAG 57.548 39.130 0.00 0.00 0.00 1.85
2697 2761 4.567747 GGGCGGAATAGATTGGTCCATTAT 60.568 45.833 0.00 0.00 0.00 1.28
2699 2763 2.489073 GGGCGGAATAGATTGGTCCATT 60.489 50.000 0.00 0.00 0.00 3.16
2711 2775 3.637229 TGTTTTGTTTGAAGGGCGGAATA 59.363 39.130 0.00 0.00 0.00 1.75
2751 2815 4.156455 ACGAGCAACATCCAATCCTAAT 57.844 40.909 0.00 0.00 0.00 1.73
2765 2829 2.933492 GCCAAGTGTATGGTACGAGCAA 60.933 50.000 0.00 0.00 42.75 3.91
2783 2890 7.283127 GGAAGTAATATGACAAAGATCAAGCCA 59.717 37.037 0.00 0.00 30.82 4.75
2894 3096 2.484264 AGAAAAGACAGCATACAACGCC 59.516 45.455 0.00 0.00 0.00 5.68
2896 3098 4.732285 ACAGAAAAGACAGCATACAACG 57.268 40.909 0.00 0.00 0.00 4.10
3034 3236 0.651031 GCGACAACCGGCTTAGATTC 59.349 55.000 0.00 0.00 39.04 2.52
3161 3363 7.704472 GGACATCTGATAAGAGAAGTTGTACAG 59.296 40.741 0.00 0.00 28.84 2.74
3169 3371 6.099557 AGGGAAAGGACATCTGATAAGAGAAG 59.900 42.308 0.00 0.00 0.00 2.85
3252 3454 2.094675 CACCTGCATGTTAGGGGAAAG 58.905 52.381 18.48 3.94 41.42 2.62
3513 3718 3.006752 GTGGCAATCCTTGTTCCATTTGA 59.993 43.478 0.00 0.00 0.00 2.69
3670 3876 5.002516 GCTGCAGCATAGGAAGAGATTAAT 58.997 41.667 33.36 0.00 41.59 1.40
4168 4382 2.472695 TCGCAGTCCTTTGCAGTATT 57.527 45.000 0.00 0.00 44.28 1.89
4197 4411 8.586744 ACCCTAAAATTCTATCCTTCGACTATC 58.413 37.037 0.00 0.00 0.00 2.08
4212 4426 8.414003 ACTTCTGAACTTTCAACCCTAAAATTC 58.586 33.333 0.00 0.00 36.64 2.17
4214 4428 7.898014 ACTTCTGAACTTTCAACCCTAAAAT 57.102 32.000 0.00 0.00 36.64 1.82
4395 4609 9.865321 CTAGTAAGCACCAAAATTAGTACAGTA 57.135 33.333 0.00 0.00 0.00 2.74
4398 4612 9.378551 CATCTAGTAAGCACCAAAATTAGTACA 57.621 33.333 0.00 0.00 0.00 2.90
4399 4613 9.595823 TCATCTAGTAAGCACCAAAATTAGTAC 57.404 33.333 0.00 0.00 0.00 2.73
4498 4713 4.346730 TGGCCACATGATTTCTTCAGAAT 58.653 39.130 0.00 0.00 37.89 2.40
4560 4775 9.744468 ACAAATTAAGTAACCACAAGAAATGTC 57.256 29.630 0.00 0.00 41.46 3.06
4867 5108 4.336889 TGGACAAGACTACCACAAGAAG 57.663 45.455 0.00 0.00 0.00 2.85
5127 5370 7.393551 ACACTGTTCAATTTTAAAAGCATCG 57.606 32.000 6.79 0.00 0.00 3.84
5254 5497 8.803235 TGAATAGTAAGCTCTAACTGTTTGAGA 58.197 33.333 27.97 12.97 28.60 3.27
5279 5522 7.710475 ACTGAATTTGTAAGTCCAAACCAATTG 59.290 33.333 0.00 0.00 37.16 2.32
5331 5578 6.371595 TCCCATACAAAATGCCAGAATTTT 57.628 33.333 0.00 0.00 39.71 1.82
5430 5679 7.117812 AGGTGATGTGTTGATTTACTTAGTTCG 59.882 37.037 0.00 0.00 0.00 3.95
5560 5811 4.792068 ACAAAAGGATGTTTGAGGACTCA 58.208 39.130 4.76 0.00 40.29 3.41
5561 5812 5.774498 AACAAAAGGATGTTTGAGGACTC 57.226 39.130 4.76 0.00 40.29 3.36
5562 5813 6.544928 AAAACAAAAGGATGTTTGAGGACT 57.455 33.333 6.21 0.00 40.29 3.85
5563 5814 7.095649 GCATAAAACAAAAGGATGTTTGAGGAC 60.096 37.037 6.21 0.00 40.29 3.85
5564 5815 6.928492 GCATAAAACAAAAGGATGTTTGAGGA 59.072 34.615 6.21 0.00 40.29 3.71
5565 5816 6.147656 GGCATAAAACAAAAGGATGTTTGAGG 59.852 38.462 6.21 2.46 40.29 3.86
5566 5817 6.147656 GGGCATAAAACAAAAGGATGTTTGAG 59.852 38.462 6.21 1.97 40.29 3.02
5597 5849 7.043961 TGTTGCACTAAATGTTTCATAACCA 57.956 32.000 0.00 0.00 33.15 3.67
5695 5949 1.523758 AAATCACAGCAGGACGGAAC 58.476 50.000 0.00 0.00 0.00 3.62
5742 5997 1.537348 CGGATTGCCTGCCATCATTTG 60.537 52.381 5.68 0.00 0.00 2.32
5762 6017 1.303317 TTTCCCTTGCCGAAGAGCC 60.303 57.895 0.00 0.00 0.00 4.70
5804 6059 0.319083 TGTTGAAGTGGACGCCGTAT 59.681 50.000 0.00 0.00 0.00 3.06
5843 6098 0.179171 CGTTCATGGCGTAGTCGACT 60.179 55.000 23.66 23.66 46.49 4.18
5971 6226 2.045926 ATGTTGGCGGAGAGGTGC 60.046 61.111 0.00 0.00 0.00 5.01
6004 6278 1.923395 AACCCTCGGATGCCTTGGA 60.923 57.895 0.00 0.00 0.00 3.53
6007 6281 0.252197 GTACAACCCTCGGATGCCTT 59.748 55.000 0.00 0.00 0.00 4.35
6014 6288 0.170561 CTCGACTGTACAACCCTCGG 59.829 60.000 0.00 0.00 0.00 4.63
6070 6344 6.315393 CACATGTCATCTCACATTCTCATGAA 59.685 38.462 0.00 0.00 34.60 2.57
6071 6345 5.815740 CACATGTCATCTCACATTCTCATGA 59.184 40.000 0.00 0.00 34.60 3.07
6096 6370 0.606401 GGCCACAGCTTTGCACTCTA 60.606 55.000 0.00 0.00 39.73 2.43
6101 6375 3.608662 GCAGGCCACAGCTTTGCA 61.609 61.111 5.01 0.00 44.00 4.08
6164 6438 5.395611 TGGATGATGATGCATTTTATCCCA 58.604 37.500 21.59 16.02 32.92 4.37
6165 6439 5.988310 TGGATGATGATGCATTTTATCCC 57.012 39.130 21.59 14.45 32.92 3.85
6166 6440 6.263344 CGATGGATGATGATGCATTTTATCC 58.737 40.000 19.40 19.40 40.49 2.59
6167 6441 6.094464 TCCGATGGATGATGATGCATTTTATC 59.906 38.462 0.00 6.62 40.49 1.75
6168 6442 5.947566 TCCGATGGATGATGATGCATTTTAT 59.052 36.000 0.00 0.00 40.49 1.40
6169 6443 5.315348 TCCGATGGATGATGATGCATTTTA 58.685 37.500 0.00 0.00 40.49 1.52
6244 6518 8.387354 CGCTGTACAGTTCATGAAAAATATACA 58.613 33.333 23.44 12.77 0.00 2.29
6245 6519 8.388103 ACGCTGTACAGTTCATGAAAAATATAC 58.612 33.333 23.44 9.17 0.00 1.47
6402 6681 4.003788 ACCGGTGAAGACCTGCCG 62.004 66.667 6.12 0.00 40.58 5.69
6474 6753 0.670546 CTGTGGACGGCGATCAACTT 60.671 55.000 16.62 0.00 0.00 2.66
6494 6773 5.358298 AGAAATTAAACGTGCAACCTCTC 57.642 39.130 0.00 0.00 0.00 3.20
6545 6824 1.338674 TGGAGACCAGTTTATGTGGCG 60.339 52.381 0.00 0.00 38.83 5.69
6570 6849 3.323751 AATTCAGGGTCAGCAAATTGC 57.676 42.857 10.41 10.41 45.46 3.56
6600 6879 3.817084 ACTACCTTGCTACGATGCGTATA 59.183 43.478 0.00 0.00 41.53 1.47
6639 6936 3.012518 CCATTTTCAGTCTCGATTGCCT 58.987 45.455 0.00 0.00 0.00 4.75
6656 6953 2.034879 CGAAGCCGAGTGCACCATT 61.035 57.895 14.63 1.01 44.83 3.16
6673 6970 4.742417 TCATGAAACATTGGCATAAACCG 58.258 39.130 0.00 0.00 0.00 4.44
6679 6976 8.246430 AGAAGATTATCATGAAACATTGGCAT 57.754 30.769 0.00 0.00 0.00 4.40
6698 7055 7.888250 AGGTCAAGTTTTCAGAAAAGAAGAT 57.112 32.000 8.67 0.00 0.00 2.40
6715 7072 7.907214 AGTACTACTAAATTGCAAGGTCAAG 57.093 36.000 4.94 0.76 0.00 3.02
6731 7088 9.420551 GCAAATTTACTTCTGTGTAGTACTACT 57.579 33.333 28.56 12.82 37.00 2.57
6732 7089 9.420551 AGCAAATTTACTTCTGTGTAGTACTAC 57.579 33.333 23.58 23.58 36.63 2.73
6737 7094 8.936864 GTGATAGCAAATTTACTTCTGTGTAGT 58.063 33.333 0.00 0.00 0.00 2.73
6738 7095 9.155975 AGTGATAGCAAATTTACTTCTGTGTAG 57.844 33.333 0.00 0.00 0.00 2.74
6805 7164 4.221482 AGCTCATGAGTCATGACTTGTGTA 59.779 41.667 28.18 16.89 44.60 2.90
6806 7165 3.007723 AGCTCATGAGTCATGACTTGTGT 59.992 43.478 28.18 12.58 44.60 3.72
6807 7166 3.597255 AGCTCATGAGTCATGACTTGTG 58.403 45.455 28.18 26.07 44.60 3.33
6808 7167 3.977134 AGCTCATGAGTCATGACTTGT 57.023 42.857 28.18 17.32 44.60 3.16
6809 7168 5.236695 CCAATAGCTCATGAGTCATGACTTG 59.763 44.000 28.18 22.64 44.60 3.16
6811 7170 4.652881 TCCAATAGCTCATGAGTCATGACT 59.347 41.667 28.18 28.23 44.60 3.41
6812 7171 4.953667 TCCAATAGCTCATGAGTCATGAC 58.046 43.478 28.18 23.21 44.60 3.06
6813 7172 5.363101 GTTCCAATAGCTCATGAGTCATGA 58.637 41.667 29.39 29.39 46.84 3.07
6815 7174 4.164796 TGGTTCCAATAGCTCATGAGTCAT 59.835 41.667 23.38 13.81 0.00 3.06
6816 7175 3.519107 TGGTTCCAATAGCTCATGAGTCA 59.481 43.478 23.38 12.14 0.00 3.41
6817 7176 4.125703 CTGGTTCCAATAGCTCATGAGTC 58.874 47.826 23.38 15.41 0.00 3.36
6820 7179 3.430790 CGACTGGTTCCAATAGCTCATGA 60.431 47.826 0.00 0.00 0.00 3.07
6821 7180 2.868583 CGACTGGTTCCAATAGCTCATG 59.131 50.000 0.00 0.00 0.00 3.07
6822 7181 2.743183 GCGACTGGTTCCAATAGCTCAT 60.743 50.000 0.00 0.00 0.00 2.90
6823 7182 1.405526 GCGACTGGTTCCAATAGCTCA 60.406 52.381 0.00 0.00 0.00 4.26
6884 7319 6.311445 TCAGACTGAGAAATTAAGCGATGTTC 59.689 38.462 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.