Multiple sequence alignment - TraesCS1A01G327700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G327700 chr1A 100.000 4100 0 0 930 5029 517101153 517097054 0.000000e+00 7572.0
1 TraesCS1A01G327700 chr1A 100.000 664 0 0 1 664 517102082 517101419 0.000000e+00 1227.0
2 TraesCS1A01G327700 chr1A 78.526 312 50 13 2945 3242 32187515 32187823 6.650000e-44 189.0
3 TraesCS1A01G327700 chr1A 95.588 68 1 2 3670 3736 427302674 427302608 1.910000e-19 108.0
4 TraesCS1A01G327700 chr1A 96.875 64 1 1 3673 3735 568702334 568702271 6.890000e-19 106.0
5 TraesCS1A01G327700 chr1A 91.837 49 3 1 3298 3345 515800303 515800351 3.250000e-07 67.6
6 TraesCS1A01G327700 chr1A 94.872 39 2 0 356 394 585841285 585841323 1.510000e-05 62.1
7 TraesCS1A01G327700 chr1A 100.000 28 0 0 361 388 76540076 76540049 9.000000e-03 52.8
8 TraesCS1A01G327700 chr1A 96.774 31 1 0 358 388 587391430 587391460 9.000000e-03 52.8
9 TraesCS1A01G327700 chr1B 92.643 2474 104 28 1068 3504 568967188 568964756 0.000000e+00 3489.0
10 TraesCS1A01G327700 chr1B 97.230 686 14 2 3672 4357 568964754 568964074 0.000000e+00 1157.0
11 TraesCS1A01G327700 chr1B 95.269 465 17 5 4564 5024 568964069 568963606 0.000000e+00 732.0
12 TraesCS1A01G327700 chr1B 88.356 292 27 4 11 296 568968446 568968156 1.340000e-90 344.0
13 TraesCS1A01G327700 chr1B 80.655 336 52 9 2918 3242 50988713 50989046 1.080000e-61 248.0
14 TraesCS1A01G327700 chr1B 85.517 145 17 3 934 1075 568967354 568967211 1.130000e-31 148.0
15 TraesCS1A01G327700 chr1D 95.378 1904 75 11 1436 3332 420653253 420651356 0.000000e+00 3016.0
16 TraesCS1A01G327700 chr1D 97.093 688 19 1 3670 4357 420651229 420650543 0.000000e+00 1158.0
17 TraesCS1A01G327700 chr1D 95.228 461 10 5 4564 5023 420650538 420650089 0.000000e+00 719.0
18 TraesCS1A01G327700 chr1D 81.741 471 44 16 931 1372 420653709 420653252 6.190000e-94 355.0
19 TraesCS1A01G327700 chr1D 86.850 327 27 9 11 324 420657142 420656819 8.010000e-93 351.0
20 TraesCS1A01G327700 chr1D 95.480 177 5 1 3503 3679 178466305 178466478 3.830000e-71 279.0
21 TraesCS1A01G327700 chr1D 77.876 339 57 14 2918 3242 33605535 33605869 1.430000e-45 195.0
22 TraesCS1A01G327700 chr1D 90.511 137 3 3 3375 3506 420651358 420651227 6.690000e-39 172.0
23 TraesCS1A01G327700 chr1D 93.333 75 3 2 3315 3388 433912612 433912685 5.320000e-20 110.0
24 TraesCS1A01G327700 chr1D 95.522 67 2 1 3313 3378 490103125 490103059 6.890000e-19 106.0
25 TraesCS1A01G327700 chr1D 96.774 62 1 1 3670 3730 330094223 330094162 8.910000e-18 102.0
26 TraesCS1A01G327700 chr1D 90.000 80 5 2 3315 3391 442373850 442373771 3.200000e-17 100.0
27 TraesCS1A01G327700 chr1D 83.333 120 5 9 3277 3381 35756985 35756866 4.140000e-16 97.1
28 TraesCS1A01G327700 chr1D 81.197 117 10 7 3273 3380 462088863 462088750 3.230000e-12 84.2
29 TraesCS1A01G327700 chr1D 96.970 33 1 0 356 388 6137083 6137115 7.030000e-04 56.5
30 TraesCS1A01G327700 chr1D 100.000 28 0 0 362 389 476706443 476706470 9.000000e-03 52.8
31 TraesCS1A01G327700 chr2D 98.507 201 2 1 4352 4551 131459312 131459112 2.230000e-93 353.0
32 TraesCS1A01G327700 chr2D 92.611 203 12 3 4352 4552 255685155 255684954 6.370000e-74 289.0
33 TraesCS1A01G327700 chr2D 92.000 200 4 5 4352 4549 495781733 495781922 2.310000e-68 270.0
34 TraesCS1A01G327700 chr2D 93.939 132 8 0 4418 4549 273007576 273007707 3.070000e-47 200.0
35 TraesCS1A01G327700 chr2D 97.059 34 1 0 356 389 86071824 86071857 1.960000e-04 58.4
36 TraesCS1A01G327700 chr2D 96.875 32 1 0 361 392 79687412 79687381 3.000000e-03 54.7
37 TraesCS1A01G327700 chr3D 97.500 200 4 1 4352 4550 67479754 67479953 1.730000e-89 340.0
38 TraesCS1A01G327700 chr3D 95.477 199 8 1 4352 4549 443355184 443355382 2.920000e-82 316.0
39 TraesCS1A01G327700 chr3D 87.745 204 20 5 4352 4550 237831646 237831443 3.030000e-57 233.0
40 TraesCS1A01G327700 chr3D 97.101 69 0 2 3671 3738 30427870 30427937 1.140000e-21 115.0
41 TraesCS1A01G327700 chr3D 90.909 77 1 2 3314 3384 105182938 105183014 1.150000e-16 99.0
42 TraesCS1A01G327700 chr5D 97.030 202 5 1 4352 4552 7593054 7592853 6.240000e-89 339.0
43 TraesCS1A01G327700 chr7A 96.535 202 6 1 4352 4552 409257350 409257551 2.900000e-87 333.0
44 TraesCS1A01G327700 chr7A 95.050 202 9 1 4352 4552 213820550 213820349 2.920000e-82 316.0
45 TraesCS1A01G327700 chr7A 92.553 188 10 2 3503 3690 115807688 115807505 2.980000e-67 267.0
46 TraesCS1A01G327700 chr7A 94.595 37 2 0 356 392 682007523 682007487 1.960000e-04 58.4
47 TraesCS1A01G327700 chr3A 95.050 202 8 2 4352 4552 380874891 380875091 2.920000e-82 316.0
48 TraesCS1A01G327700 chr3A 87.209 86 10 1 3396 3480 522063681 522063766 4.140000e-16 97.1
49 TraesCS1A01G327700 chr3A 97.059 34 1 0 356 389 509853053 509853020 1.960000e-04 58.4
50 TraesCS1A01G327700 chr2A 93.467 199 12 1 4352 4549 57321470 57321272 1.370000e-75 294.0
51 TraesCS1A01G327700 chr2A 92.965 199 13 1 4352 4549 236827053 236827251 6.370000e-74 289.0
52 TraesCS1A01G327700 chr2A 82.184 348 39 16 3394 3733 526069868 526069536 1.380000e-70 278.0
53 TraesCS1A01G327700 chr2A 95.455 66 2 1 3315 3379 48870570 48870635 2.480000e-18 104.0
54 TraesCS1A01G327700 chr4A 95.480 177 5 1 3499 3675 362068080 362067907 3.830000e-71 279.0
55 TraesCS1A01G327700 chr4A 96.471 170 3 1 3504 3673 582529977 582530143 1.380000e-70 278.0
56 TraesCS1A01G327700 chr7B 95.930 172 5 1 4388 4557 472241474 472241645 1.380000e-70 278.0
57 TraesCS1A01G327700 chr7B 98.246 57 1 0 3673 3729 643198296 643198352 3.200000e-17 100.0
58 TraesCS1A01G327700 chr4B 94.944 178 7 2 3494 3671 53588011 53587836 1.380000e-70 278.0
59 TraesCS1A01G327700 chr4B 94.203 69 0 2 3316 3380 172508796 172508728 8.910000e-18 102.0
60 TraesCS1A01G327700 chr2B 95.402 174 5 3 3503 3676 719520504 719520674 1.780000e-69 274.0
61 TraesCS1A01G327700 chr2B 91.414 198 10 4 3486 3679 25496172 25495978 1.070000e-66 265.0
62 TraesCS1A01G327700 chr2B 80.916 262 30 14 3394 3647 461113313 461113064 6.650000e-44 189.0
63 TraesCS1A01G327700 chr2B 93.939 66 2 2 3672 3736 800067232 800067296 1.150000e-16 99.0
64 TraesCS1A01G327700 chr6A 93.956 182 8 1 3493 3674 24072071 24071893 6.420000e-69 272.0
65 TraesCS1A01G327700 chr6A 97.059 34 1 0 356 389 15944510 15944543 1.960000e-04 58.4
66 TraesCS1A01G327700 chr5B 89.216 204 21 1 4352 4554 531822838 531823041 2.320000e-63 254.0
67 TraesCS1A01G327700 chr5B 94.030 67 3 1 3315 3380 657713561 657713627 3.200000e-17 100.0
68 TraesCS1A01G327700 chr5B 97.059 34 1 0 356 389 631892286 631892319 1.960000e-04 58.4
69 TraesCS1A01G327700 chr4D 86.364 110 12 3 3277 3383 394487391 394487282 3.180000e-22 117.0
70 TraesCS1A01G327700 chr4D 97.727 44 1 0 3272 3315 173574370 173574413 5.400000e-10 76.8
71 TraesCS1A01G327700 chr6D 89.412 85 8 1 3387 3470 459736380 459736464 6.890000e-19 106.0
72 TraesCS1A01G327700 chr6D 97.059 34 1 0 356 389 61006056 61006023 1.960000e-04 58.4
73 TraesCS1A01G327700 chr3B 85.294 102 11 3 3396 3494 16048397 16048297 8.910000e-18 102.0
74 TraesCS1A01G327700 chr7D 86.517 89 11 1 3389 3476 63657393 63657305 4.140000e-16 97.1
75 TraesCS1A01G327700 chr7D 82.353 119 4 4 3277 3379 98399955 98399838 2.490000e-13 87.9
76 TraesCS1A01G327700 chr7D 100.000 29 0 0 361 389 591456878 591456850 3.000000e-03 54.7
77 TraesCS1A01G327700 chr5A 87.059 85 10 1 3396 3479 374665645 374665729 1.490000e-15 95.3
78 TraesCS1A01G327700 chr5A 86.667 75 5 4 3275 3345 7394497 7394570 1.500000e-10 78.7
79 TraesCS1A01G327700 chr6B 95.745 47 2 0 3269 3315 216509750 216509796 5.400000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G327700 chr1A 517097054 517102082 5028 True 4399.500000 7572 100.0000 1 5029 2 chr1A.!!$R4 5028
1 TraesCS1A01G327700 chr1B 568963606 568968446 4840 True 1174.000000 3489 91.8030 11 5024 5 chr1B.!!$R1 5013
2 TraesCS1A01G327700 chr1D 420650089 420657142 7053 True 961.833333 3016 91.1335 11 5023 6 chr1D.!!$R6 5012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 69 0.035630 GTGAAGCCTCCAGTCATGCT 60.036 55.000 0.00 0.0 35.08 3.79 F
1392 4593 0.255890 AGGCGGCCATTGTATTGAGT 59.744 50.000 23.09 0.0 0.00 3.41 F
1709 4912 0.179282 CAAACAAGCTCGTACGTCGC 60.179 55.000 16.05 18.1 39.67 5.19 F
2770 5981 1.916181 CCAGAGGGTAATTGGGTCTGT 59.084 52.381 0.00 0.0 34.09 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 4893 0.179282 GCGACGTACGAGCTTGTTTG 60.179 55.0 24.41 7.79 45.77 2.93 R
2519 5730 0.336392 GGAATCCCCAGCCCTTCTTT 59.664 55.0 0.00 0.00 34.14 2.52 R
3656 6901 1.192428 ACATGTACTCCCTCCGTTCC 58.808 55.0 0.00 0.00 0.00 3.62 R
4459 7704 0.040646 TCCTAGGAGGCGGTTTCAGA 59.959 55.0 7.62 0.00 34.61 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 3.127533 GGCTTGATGCGCGGAACT 61.128 61.111 3.18 0.00 44.05 3.01
48 50 3.731216 CGCGGAACTATGAGTTGTCTATG 59.269 47.826 0.00 0.00 38.80 2.23
59 61 2.906389 AGTTGTCTATGTGAAGCCTCCA 59.094 45.455 0.00 0.00 0.00 3.86
60 62 3.055530 AGTTGTCTATGTGAAGCCTCCAG 60.056 47.826 0.00 0.00 0.00 3.86
67 69 0.035630 GTGAAGCCTCCAGTCATGCT 60.036 55.000 0.00 0.00 35.08 3.79
154 169 8.877808 ATACATATACAACACATGTCACAGAG 57.122 34.615 0.00 0.00 42.70 3.35
155 170 6.935167 ACATATACAACACATGTCACAGAGA 58.065 36.000 0.00 0.00 42.70 3.10
182 197 7.012421 GGAAATGGATCTACTGATAAACCACAC 59.988 40.741 0.00 0.00 30.20 3.82
190 206 7.383687 TCTACTGATAAACCACACGAAAGATT 58.616 34.615 0.00 0.00 0.00 2.40
200 216 6.337356 ACCACACGAAAGATTGTTTGATTTT 58.663 32.000 0.00 0.00 0.00 1.82
202 218 6.697019 CCACACGAAAGATTGTTTGATTTTCT 59.303 34.615 0.00 0.00 0.00 2.52
212 228 7.671398 AGATTGTTTGATTTTCTGGGTAGATGT 59.329 33.333 0.00 0.00 31.81 3.06
265 281 5.106908 CGATCCTTGTTCCTTTTGAGAACTC 60.107 44.000 5.36 0.00 43.28 3.01
279 295 5.320549 TGAGAACTCCCGTACTTCAATAC 57.679 43.478 0.00 0.00 0.00 1.89
289 305 5.466728 CCCGTACTTCAATACAATCCAGATG 59.533 44.000 0.00 0.00 0.00 2.90
293 964 8.116753 CGTACTTCAATACAATCCAGATGTTTC 58.883 37.037 0.00 0.00 32.27 2.78
296 967 4.335315 TCAATACAATCCAGATGTTTCGGC 59.665 41.667 0.00 0.00 32.27 5.54
297 968 2.496899 ACAATCCAGATGTTTCGGCT 57.503 45.000 0.00 0.00 0.00 5.52
301 972 4.764823 ACAATCCAGATGTTTCGGCTAAAA 59.235 37.500 0.00 0.00 0.00 1.52
336 1100 5.858381 TCTAGCCTGATTTAAAGATGCGAT 58.142 37.500 0.00 0.00 0.00 4.58
351 1864 2.342179 TGCGATGCACTATTCGTTGAA 58.658 42.857 9.02 0.00 31.71 2.69
356 1869 4.550831 CGATGCACTATTCGTTGAACCATC 60.551 45.833 0.00 0.00 0.00 3.51
358 1871 3.270877 GCACTATTCGTTGAACCATCCT 58.729 45.455 0.00 0.00 0.00 3.24
359 1872 3.063997 GCACTATTCGTTGAACCATCCTG 59.936 47.826 0.00 0.00 0.00 3.86
360 1873 4.503910 CACTATTCGTTGAACCATCCTGA 58.496 43.478 0.00 0.00 0.00 3.86
361 1874 4.935205 CACTATTCGTTGAACCATCCTGAA 59.065 41.667 0.00 0.00 0.00 3.02
362 1875 5.586243 CACTATTCGTTGAACCATCCTGAAT 59.414 40.000 0.00 0.00 0.00 2.57
363 1876 6.761242 CACTATTCGTTGAACCATCCTGAATA 59.239 38.462 0.00 0.00 0.00 1.75
365 1878 8.647796 ACTATTCGTTGAACCATCCTGAATATA 58.352 33.333 0.00 0.00 29.39 0.86
367 1880 7.786178 TTCGTTGAACCATCCTGAATATAAG 57.214 36.000 0.00 0.00 0.00 1.73
369 1882 6.984474 TCGTTGAACCATCCTGAATATAAGTC 59.016 38.462 0.00 0.00 0.00 3.01
370 1883 6.986817 CGTTGAACCATCCTGAATATAAGTCT 59.013 38.462 0.00 0.00 0.00 3.24
373 1886 9.753674 TTGAACCATCCTGAATATAAGTCTTTT 57.246 29.630 0.00 0.00 0.00 2.27
374 1887 9.753674 TGAACCATCCTGAATATAAGTCTTTTT 57.246 29.630 0.00 0.00 0.00 1.94
425 1938 8.462143 AAATATTCCAATATAGACTACGCACG 57.538 34.615 0.00 0.00 31.57 5.34
426 1939 5.700722 ATTCCAATATAGACTACGCACGA 57.299 39.130 0.00 0.00 0.00 4.35
427 1940 5.503662 TTCCAATATAGACTACGCACGAA 57.496 39.130 0.00 0.00 0.00 3.85
429 1942 5.516996 TCCAATATAGACTACGCACGAAAG 58.483 41.667 0.00 0.00 0.00 2.62
430 1943 4.148348 CCAATATAGACTACGCACGAAAGC 59.852 45.833 0.00 0.00 0.00 3.51
431 1944 2.933495 ATAGACTACGCACGAAAGCA 57.067 45.000 0.00 0.00 0.00 3.91
438 1951 2.483583 ACGCACGAAAGCAAAATGAA 57.516 40.000 0.00 0.00 0.00 2.57
440 1953 2.725723 ACGCACGAAAGCAAAATGAATG 59.274 40.909 0.00 0.00 0.00 2.67
442 1955 3.424861 CGCACGAAAGCAAAATGAATGAA 59.575 39.130 0.00 0.00 0.00 2.57
443 1956 4.090354 CGCACGAAAGCAAAATGAATGAAT 59.910 37.500 0.00 0.00 0.00 2.57
444 1957 5.544621 GCACGAAAGCAAAATGAATGAATC 58.455 37.500 0.00 0.00 0.00 2.52
445 1958 5.346822 GCACGAAAGCAAAATGAATGAATCT 59.653 36.000 0.00 0.00 0.00 2.40
446 1959 6.527722 GCACGAAAGCAAAATGAATGAATCTA 59.472 34.615 0.00 0.00 0.00 1.98
447 1960 7.461938 GCACGAAAGCAAAATGAATGAATCTAC 60.462 37.037 0.00 0.00 0.00 2.59
448 1961 7.538334 CACGAAAGCAAAATGAATGAATCTACA 59.462 33.333 0.00 0.00 0.00 2.74
450 1963 9.079833 CGAAAGCAAAATGAATGAATCTACATT 57.920 29.630 0.00 0.00 42.19 2.71
459 1972 9.888878 AATGAATGAATCTACATTTAGAATGCG 57.111 29.630 0.80 0.00 40.03 4.73
460 1973 8.437360 TGAATGAATCTACATTTAGAATGCGT 57.563 30.769 0.80 0.00 40.03 5.24
461 1974 8.551205 TGAATGAATCTACATTTAGAATGCGTC 58.449 33.333 0.80 0.00 40.03 5.19
462 1975 8.668510 AATGAATCTACATTTAGAATGCGTCT 57.331 30.769 0.80 0.00 37.88 4.18
463 1976 9.764363 AATGAATCTACATTTAGAATGCGTCTA 57.236 29.630 0.80 0.00 37.88 2.59
464 1977 9.935241 ATGAATCTACATTTAGAATGCGTCTAT 57.065 29.630 0.80 0.00 38.67 1.98
478 1991 9.019656 AGAATGCGTCTATATACTGAAATCTCT 57.980 33.333 0.00 0.00 33.56 3.10
519 2032 6.453476 AGAAAATAGTATTCTCTCCTCCCCA 58.547 40.000 0.00 0.00 31.61 4.96
520 2033 6.909158 AGAAAATAGTATTCTCTCCTCCCCAA 59.091 38.462 0.00 0.00 31.61 4.12
521 2034 7.406151 AGAAAATAGTATTCTCTCCTCCCCAAA 59.594 37.037 0.00 0.00 31.61 3.28
523 2036 8.814448 AAATAGTATTCTCTCCTCCCCAAATA 57.186 34.615 0.00 0.00 0.00 1.40
525 2038 6.755542 AGTATTCTCTCCTCCCCAAATAAG 57.244 41.667 0.00 0.00 0.00 1.73
526 2039 6.213525 AGTATTCTCTCCTCCCCAAATAAGT 58.786 40.000 0.00 0.00 0.00 2.24
527 2040 4.844349 TTCTCTCCTCCCCAAATAAGTG 57.156 45.455 0.00 0.00 0.00 3.16
530 2043 3.777522 CTCTCCTCCCCAAATAAGTGTCT 59.222 47.826 0.00 0.00 0.00 3.41
531 2044 3.775316 TCTCCTCCCCAAATAAGTGTCTC 59.225 47.826 0.00 0.00 0.00 3.36
534 2047 5.347124 TCCTCCCCAAATAAGTGTCTCTTA 58.653 41.667 0.00 0.00 41.98 2.10
535 2048 5.189145 TCCTCCCCAAATAAGTGTCTCTTAC 59.811 44.000 0.00 0.00 40.80 2.34
536 2049 5.189934 CCTCCCCAAATAAGTGTCTCTTACT 59.810 44.000 0.00 0.00 40.80 2.24
538 2051 6.708285 TCCCCAAATAAGTGTCTCTTACTTC 58.292 40.000 0.00 0.00 40.80 3.01
539 2052 6.271391 TCCCCAAATAAGTGTCTCTTACTTCA 59.729 38.462 0.00 0.00 40.80 3.02
541 3376 8.265055 CCCCAAATAAGTGTCTCTTACTTCATA 58.735 37.037 0.00 0.00 40.80 2.15
606 3441 9.003658 ACAAAGTACTTTCTCTGTTCCATAATG 57.996 33.333 18.00 4.75 0.00 1.90
607 3442 9.003658 CAAAGTACTTTCTCTGTTCCATAATGT 57.996 33.333 18.00 0.00 0.00 2.71
609 3444 9.654663 AAGTACTTTCTCTGTTCCATAATGTAC 57.345 33.333 1.12 0.00 33.92 2.90
610 3445 8.812972 AGTACTTTCTCTGTTCCATAATGTACA 58.187 33.333 0.00 0.00 35.12 2.90
627 3462 6.770286 ATGTACATTATGGATGAAGGGAGT 57.230 37.500 1.41 0.00 39.15 3.85
629 3464 7.062749 TGTACATTATGGATGAAGGGAGTAC 57.937 40.000 0.00 0.00 39.15 2.73
630 3465 6.844388 TGTACATTATGGATGAAGGGAGTACT 59.156 38.462 0.00 0.00 39.15 2.73
632 3467 7.213178 ACATTATGGATGAAGGGAGTACTTT 57.787 36.000 0.00 0.00 39.15 2.66
633 3468 7.283329 ACATTATGGATGAAGGGAGTACTTTC 58.717 38.462 0.00 0.00 39.15 2.62
634 3469 7.127955 ACATTATGGATGAAGGGAGTACTTTCT 59.872 37.037 0.00 0.00 39.15 2.52
635 3470 8.651389 CATTATGGATGAAGGGAGTACTTTCTA 58.349 37.037 0.00 0.00 38.03 2.10
636 3471 5.934402 TGGATGAAGGGAGTACTTTCTAC 57.066 43.478 0.00 0.00 0.00 2.59
638 3473 6.738635 TGGATGAAGGGAGTACTTTCTACTA 58.261 40.000 0.00 0.00 0.00 1.82
639 3474 7.186972 TGGATGAAGGGAGTACTTTCTACTAA 58.813 38.462 0.00 0.00 0.00 2.24
641 3476 7.342541 GGATGAAGGGAGTACTTTCTACTAACT 59.657 40.741 0.00 0.00 0.00 2.24
642 3477 8.667592 ATGAAGGGAGTACTTTCTACTAACTT 57.332 34.615 0.00 0.00 0.00 2.66
643 3478 7.893658 TGAAGGGAGTACTTTCTACTAACTTG 58.106 38.462 0.00 0.00 0.00 3.16
644 3479 7.727186 TGAAGGGAGTACTTTCTACTAACTTGA 59.273 37.037 0.00 0.00 0.00 3.02
645 3480 7.706100 AGGGAGTACTTTCTACTAACTTGAG 57.294 40.000 0.00 0.00 0.00 3.02
647 3482 7.612633 AGGGAGTACTTTCTACTAACTTGAGAG 59.387 40.741 0.00 0.00 0.00 3.20
648 3483 7.148035 GGGAGTACTTTCTACTAACTTGAGAGG 60.148 44.444 0.00 0.00 0.00 3.69
649 3484 7.611079 GGAGTACTTTCTACTAACTTGAGAGGA 59.389 40.741 0.00 0.00 0.00 3.71
650 3485 8.570068 AGTACTTTCTACTAACTTGAGAGGAG 57.430 38.462 0.00 0.00 0.00 3.69
651 3486 8.384718 AGTACTTTCTACTAACTTGAGAGGAGA 58.615 37.037 0.00 0.00 0.00 3.71
652 3487 7.457024 ACTTTCTACTAACTTGAGAGGAGAC 57.543 40.000 0.00 0.00 0.00 3.36
653 3488 7.005296 ACTTTCTACTAACTTGAGAGGAGACA 58.995 38.462 0.00 0.00 0.00 3.41
654 3489 6.821031 TTCTACTAACTTGAGAGGAGACAC 57.179 41.667 0.00 0.00 0.00 3.67
655 3490 6.129414 TCTACTAACTTGAGAGGAGACACT 57.871 41.667 0.00 0.00 0.00 3.55
656 3491 6.544650 TCTACTAACTTGAGAGGAGACACTT 58.455 40.000 0.00 0.00 0.00 3.16
657 3492 7.687388 TCTACTAACTTGAGAGGAGACACTTA 58.313 38.462 0.00 0.00 0.00 2.24
658 3493 6.578163 ACTAACTTGAGAGGAGACACTTAC 57.422 41.667 0.00 0.00 0.00 2.34
660 3495 2.229302 ACTTGAGAGGAGACACTTACGC 59.771 50.000 0.00 0.00 0.00 4.42
661 3496 2.201921 TGAGAGGAGACACTTACGCT 57.798 50.000 0.00 0.00 0.00 5.07
662 3497 2.085320 TGAGAGGAGACACTTACGCTC 58.915 52.381 0.00 0.00 0.00 5.03
663 3498 2.085320 GAGAGGAGACACTTACGCTCA 58.915 52.381 0.00 0.00 0.00 4.26
950 4102 2.179517 GAGACACTCGCGTCCTGG 59.820 66.667 5.77 0.00 36.52 4.45
965 4117 2.117423 TGGTGTCCGCTCCAGAGA 59.883 61.111 0.00 0.00 33.76 3.10
1001 4155 6.433847 TGGATTATTAATCAGACGGTGGAT 57.566 37.500 16.27 0.00 39.71 3.41
1003 4157 6.042666 TGGATTATTAATCAGACGGTGGATGA 59.957 38.462 16.27 0.00 39.71 2.92
1011 4165 1.205893 AGACGGTGGATGAGAAAGAGC 59.794 52.381 0.00 0.00 0.00 4.09
1013 4167 1.338200 ACGGTGGATGAGAAAGAGCAC 60.338 52.381 0.00 0.00 0.00 4.40
1014 4168 1.743996 GGTGGATGAGAAAGAGCACC 58.256 55.000 0.00 0.00 0.00 5.01
1032 4186 4.371231 CCCCCTCCCCACTTCCCT 62.371 72.222 0.00 0.00 0.00 4.20
1033 4187 2.692741 CCCCTCCCCACTTCCCTC 60.693 72.222 0.00 0.00 0.00 4.30
1098 4282 2.481009 GGCCGCTTTCTTCTTCGC 59.519 61.111 0.00 0.00 0.00 4.70
1101 4285 1.790387 CCGCTTTCTTCTTCGCTGG 59.210 57.895 0.00 0.00 0.00 4.85
1181 4382 2.441164 TCTCTGCCGCCTCTCTCC 60.441 66.667 0.00 0.00 0.00 3.71
1218 4419 1.982073 GCCATGTACGCCAGCTGTTC 61.982 60.000 13.81 2.93 0.00 3.18
1233 4434 3.496130 AGCTGTTCGTTGAAATGTCTCAG 59.504 43.478 0.00 0.00 0.00 3.35
1236 4437 0.790207 TCGTTGAAATGTCTCAGCGC 59.210 50.000 0.00 0.00 46.02 5.92
1252 4453 4.179579 GCTCACCGGCGCATTTCC 62.180 66.667 10.83 0.00 0.00 3.13
1300 4501 1.534163 CGATCCGCGGTAAGTCTATGA 59.466 52.381 27.15 0.67 36.03 2.15
1313 4514 0.608130 TCTATGATGGGAATCGGGCG 59.392 55.000 0.00 0.00 0.00 6.13
1361 4562 0.539051 CCGCTCCTTCTGGATGAACT 59.461 55.000 0.00 0.00 42.29 3.01
1387 4588 2.515901 GGGAGGCGGCCATTGTAT 59.484 61.111 23.09 0.00 0.00 2.29
1392 4593 0.255890 AGGCGGCCATTGTATTGAGT 59.744 50.000 23.09 0.00 0.00 3.41
1426 4627 1.031571 TCAAATGATGCCCCGTGCTC 61.032 55.000 0.00 0.00 42.00 4.26
1449 4650 6.060136 TCTGCATTCTGGATTTCCTATTGAG 58.940 40.000 0.00 0.00 36.82 3.02
1455 4656 5.541845 TCTGGATTTCCTATTGAGTATGCG 58.458 41.667 0.00 0.00 36.82 4.73
1462 4663 5.545063 TCCTATTGAGTATGCGAATGGAA 57.455 39.130 0.00 0.00 0.00 3.53
1480 4681 1.331756 GAATTCATACCTGCCAGTGCG 59.668 52.381 0.00 0.00 41.78 5.34
1491 4692 0.721718 GCCAGTGCGTTAGCTACTTG 59.278 55.000 0.00 0.00 45.42 3.16
1502 4703 4.444720 CGTTAGCTACTTGGCTTAGTATGC 59.555 45.833 0.00 0.00 42.97 3.14
1520 4721 2.905075 TGCCATCATTGTTCGTCTAGG 58.095 47.619 0.00 0.00 0.00 3.02
1550 4751 1.489649 ACCTCATGGCAGAGATTCCTG 59.510 52.381 13.36 0.00 37.87 3.86
1573 4774 3.865164 GGCATTTGTGTTTAGGCTTATGC 59.135 43.478 0.00 0.00 37.12 3.14
1596 4797 1.300931 CACCGTCCCTGAGTGTGTG 60.301 63.158 0.00 0.00 0.00 3.82
1611 4812 1.069204 TGTGTGCCTGAGAGAGACAAC 59.931 52.381 0.00 0.00 0.00 3.32
1621 4822 1.689273 AGAGAGACAACTCAAGCCGTT 59.311 47.619 0.00 0.00 44.79 4.44
1680 4881 6.040247 CGTTTAGACATTGCCAGTCTACATA 58.960 40.000 8.88 0.00 45.44 2.29
1690 4893 7.843490 TTGCCAGTCTACATAACTGAATAAC 57.157 36.000 4.89 0.00 45.64 1.89
1709 4912 0.179282 CAAACAAGCTCGTACGTCGC 60.179 55.000 16.05 18.10 39.67 5.19
1836 5040 3.513912 TGATAAAGAACAAGCCTCTCGGA 59.486 43.478 0.00 0.00 0.00 4.55
1838 5042 2.171341 AAGAACAAGCCTCTCGGAAC 57.829 50.000 0.00 0.00 0.00 3.62
2157 5365 6.498651 TGCTTTATGTTCAAGGGGGAAATAAA 59.501 34.615 0.00 0.00 0.00 1.40
2159 5367 7.310423 GCTTTATGTTCAAGGGGGAAATAAAGT 60.310 37.037 18.42 0.00 38.34 2.66
2162 5370 9.777008 TTATGTTCAAGGGGGAAATAAAGTTAT 57.223 29.630 0.00 0.00 0.00 1.89
2203 5411 9.828852 TGTTTGTGGTTATATCATTTAAACGTC 57.171 29.630 0.00 0.00 0.00 4.34
2435 5646 6.732896 TGGAGTTCTACAGTTTCTTTCTCT 57.267 37.500 0.00 0.00 0.00 3.10
2543 5754 3.728373 GGCTGGGGATTCCGTGGT 61.728 66.667 0.00 0.00 38.76 4.16
2770 5981 1.916181 CCAGAGGGTAATTGGGTCTGT 59.084 52.381 0.00 0.00 34.09 3.41
2943 6154 8.055279 TGGATTTTATCTTCAGTTGGAACATC 57.945 34.615 0.00 0.00 39.30 3.06
3006 6217 2.611971 CGAGGGTGAAATCGAAACCAGA 60.612 50.000 10.82 0.00 41.40 3.86
3105 6316 8.446489 TCAACATTGACTAACAATTTAATGCG 57.554 30.769 0.00 0.00 45.60 4.73
3112 6323 8.894409 TGACTAACAATTTAATGCGAATTCAG 57.106 30.769 6.22 0.00 0.00 3.02
3128 6339 7.589587 TGCGAATTCAGTTTTGTTGTAGTAATG 59.410 33.333 6.22 0.00 0.00 1.90
3332 6564 5.779922 TGACACGTCCCATAATATAAGAGC 58.220 41.667 0.00 0.00 0.00 4.09
3333 6565 4.806330 ACACGTCCCATAATATAAGAGCG 58.194 43.478 0.00 0.00 0.00 5.03
3334 6566 4.280174 ACACGTCCCATAATATAAGAGCGT 59.720 41.667 0.00 0.00 0.00 5.07
3335 6567 5.221382 ACACGTCCCATAATATAAGAGCGTT 60.221 40.000 0.00 0.00 0.00 4.84
3336 6568 5.694910 CACGTCCCATAATATAAGAGCGTTT 59.305 40.000 0.00 0.00 0.00 3.60
3337 6569 6.202188 CACGTCCCATAATATAAGAGCGTTTT 59.798 38.462 0.00 0.00 0.00 2.43
3338 6570 6.764560 ACGTCCCATAATATAAGAGCGTTTTT 59.235 34.615 0.00 0.00 0.00 1.94
3339 6571 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
3340 6572 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
3341 6573 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
3342 6574 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
3343 6575 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
3344 6576 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
3345 6577 9.638300 CATAATATAAGAGCGTTTTTGACACTC 57.362 33.333 0.00 0.00 37.64 3.51
3346 6578 7.667043 AATATAAGAGCGTTTTTGACACTCA 57.333 32.000 0.00 0.00 39.40 3.41
3347 6579 7.667043 ATATAAGAGCGTTTTTGACACTCAA 57.333 32.000 0.00 0.00 39.40 3.02
3348 6580 4.695217 AAGAGCGTTTTTGACACTCAAA 57.305 36.364 0.00 0.00 43.84 2.69
3370 6602 9.104965 TCAAAAACACTCTTATATTATGGACGG 57.895 33.333 0.00 0.00 0.00 4.79
3371 6603 9.104965 CAAAAACACTCTTATATTATGGACGGA 57.895 33.333 0.00 0.00 0.00 4.69
3372 6604 8.888579 AAAACACTCTTATATTATGGACGGAG 57.111 34.615 0.00 0.00 0.00 4.63
3373 6605 6.591750 ACACTCTTATATTATGGACGGAGG 57.408 41.667 0.00 0.00 0.00 4.30
3374 6606 5.480772 ACACTCTTATATTATGGACGGAGGG 59.519 44.000 0.00 0.00 0.00 4.30
3375 6607 5.715279 CACTCTTATATTATGGACGGAGGGA 59.285 44.000 0.00 0.00 0.00 4.20
3376 6608 5.952947 ACTCTTATATTATGGACGGAGGGAG 59.047 44.000 0.00 0.00 0.00 4.30
3450 6682 2.159558 TCTCCGTCGATGCTATATTCGC 60.160 50.000 0.00 0.00 35.39 4.70
3465 6701 6.747739 GCTATATTCGCGAGATCTTACATGAA 59.252 38.462 9.59 0.00 41.60 2.57
3511 6756 7.803279 TTTTCTTGTTCTTTCTTACTCCCTC 57.197 36.000 0.00 0.00 0.00 4.30
3512 6757 5.485209 TCTTGTTCTTTCTTACTCCCTCC 57.515 43.478 0.00 0.00 0.00 4.30
3513 6758 4.905456 TCTTGTTCTTTCTTACTCCCTCCA 59.095 41.667 0.00 0.00 0.00 3.86
3514 6759 5.548056 TCTTGTTCTTTCTTACTCCCTCCAT 59.452 40.000 0.00 0.00 0.00 3.41
3515 6760 5.843019 TGTTCTTTCTTACTCCCTCCATT 57.157 39.130 0.00 0.00 0.00 3.16
3516 6761 5.805728 TGTTCTTTCTTACTCCCTCCATTC 58.194 41.667 0.00 0.00 0.00 2.67
3517 6762 5.186942 GTTCTTTCTTACTCCCTCCATTCC 58.813 45.833 0.00 0.00 0.00 3.01
3518 6763 4.699994 TCTTTCTTACTCCCTCCATTCCT 58.300 43.478 0.00 0.00 0.00 3.36
3519 6764 5.850278 TCTTTCTTACTCCCTCCATTCCTA 58.150 41.667 0.00 0.00 0.00 2.94
3520 6765 6.269194 TCTTTCTTACTCCCTCCATTCCTAA 58.731 40.000 0.00 0.00 0.00 2.69
3521 6766 6.733807 TCTTTCTTACTCCCTCCATTCCTAAA 59.266 38.462 0.00 0.00 0.00 1.85
3522 6767 7.406151 TCTTTCTTACTCCCTCCATTCCTAAAT 59.594 37.037 0.00 0.00 0.00 1.40
3523 6768 8.632731 TTTCTTACTCCCTCCATTCCTAAATA 57.367 34.615 0.00 0.00 0.00 1.40
3524 6769 8.814448 TTCTTACTCCCTCCATTCCTAAATAT 57.186 34.615 0.00 0.00 0.00 1.28
3525 6770 8.814448 TCTTACTCCCTCCATTCCTAAATATT 57.186 34.615 0.00 0.00 0.00 1.28
3526 6771 9.237706 TCTTACTCCCTCCATTCCTAAATATTT 57.762 33.333 5.89 5.89 0.00 1.40
3527 6772 9.289782 CTTACTCCCTCCATTCCTAAATATTTG 57.710 37.037 11.05 1.40 0.00 2.32
3528 6773 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
3529 6774 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
3530 6775 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
3531 6776 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
3532 6777 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
3533 6778 9.640952 CCCTCCATTCCTAAATATTTGTCTTTA 57.359 33.333 11.05 0.00 0.00 1.85
3549 6794 9.918630 ATTTGTCTTTACAGAGATTTCAAATGG 57.081 29.630 0.00 0.00 36.83 3.16
3550 6795 8.690203 TTGTCTTTACAGAGATTTCAAATGGA 57.310 30.769 0.00 0.00 36.83 3.41
3551 6796 8.099364 TGTCTTTACAGAGATTTCAAATGGAC 57.901 34.615 0.00 0.00 0.00 4.02
3552 6797 7.939039 TGTCTTTACAGAGATTTCAAATGGACT 59.061 33.333 0.00 0.00 0.00 3.85
3553 6798 9.436957 GTCTTTACAGAGATTTCAAATGGACTA 57.563 33.333 0.00 0.00 0.00 2.59
3554 6799 9.436957 TCTTTACAGAGATTTCAAATGGACTAC 57.563 33.333 0.00 0.00 0.00 2.73
3555 6800 8.561738 TTTACAGAGATTTCAAATGGACTACC 57.438 34.615 0.00 0.00 0.00 3.18
3568 6813 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
3569 6814 3.887110 TGGACTACCACATACGGATGTAG 59.113 47.826 14.23 9.10 44.82 2.74
3570 6815 3.887716 GGACTACCACATACGGATGTAGT 59.112 47.826 14.23 15.36 44.82 2.73
3571 6816 5.065914 GGACTACCACATACGGATGTAGTA 58.934 45.833 14.23 15.70 44.82 1.82
3572 6817 5.709164 GGACTACCACATACGGATGTAGTAT 59.291 44.000 17.74 9.45 44.82 2.12
3573 6818 6.881065 GGACTACCACATACGGATGTAGTATA 59.119 42.308 17.74 1.01 44.82 1.47
3574 6819 7.555554 GGACTACCACATACGGATGTAGTATAT 59.444 40.741 17.74 10.36 44.82 0.86
3575 6820 9.605275 GACTACCACATACGGATGTAGTATATA 57.395 37.037 17.74 0.00 44.82 0.86
3576 6821 9.610705 ACTACCACATACGGATGTAGTATATAG 57.389 37.037 17.74 11.35 44.82 1.31
3577 6822 9.828039 CTACCACATACGGATGTAGTATATAGA 57.172 37.037 17.74 0.00 44.82 1.98
3578 6823 8.503458 ACCACATACGGATGTAGTATATAGAC 57.497 38.462 14.23 0.00 44.82 2.59
3579 6824 8.105197 ACCACATACGGATGTAGTATATAGACA 58.895 37.037 14.23 0.96 44.82 3.41
3580 6825 9.121658 CCACATACGGATGTAGTATATAGACAT 57.878 37.037 14.23 9.11 44.82 3.06
3611 6856 6.246420 AGTGTACATTCACTCATTTTGCTC 57.754 37.500 0.00 0.00 44.07 4.26
3612 6857 5.182001 AGTGTACATTCACTCATTTTGCTCC 59.818 40.000 0.00 0.00 44.07 4.70
3613 6858 3.837213 ACATTCACTCATTTTGCTCCG 57.163 42.857 0.00 0.00 0.00 4.63
3614 6859 3.149196 ACATTCACTCATTTTGCTCCGT 58.851 40.909 0.00 0.00 0.00 4.69
3615 6860 4.323417 ACATTCACTCATTTTGCTCCGTA 58.677 39.130 0.00 0.00 0.00 4.02
3616 6861 4.943705 ACATTCACTCATTTTGCTCCGTAT 59.056 37.500 0.00 0.00 0.00 3.06
3617 6862 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3618 6863 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3619 6864 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3620 6865 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3621 6866 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3622 6867 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3623 6868 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3624 6869 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3625 6870 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3626 6871 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3627 6872 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3628 6873 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3629 6874 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3630 6875 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3631 6876 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3632 6877 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3633 6878 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3634 6879 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3635 6880 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3636 6881 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3637 6882 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3638 6883 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3639 6884 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3640 6885 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3641 6886 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3642 6887 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3643 6888 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3644 6889 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3645 6890 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3646 6891 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3647 6892 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3648 6893 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3649 6894 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
3662 6907 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3663 6908 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3664 6909 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3665 6910 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3666 6911 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3667 6912 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3668 6913 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3669 6914 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3670 6915 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3959 7204 5.313520 TCACAATGTTTGGCATACTGATG 57.686 39.130 9.46 7.86 36.67 3.07
4018 7263 1.289066 CTTTGGACGCAGGAGACGA 59.711 57.895 0.00 0.00 0.00 4.20
4022 7267 0.320374 TGGACGCAGGAGACGAATTT 59.680 50.000 0.00 0.00 0.00 1.82
4137 7382 8.652810 TTTAGTAGTGTTAGGTTTTGACTGTC 57.347 34.615 0.00 0.00 0.00 3.51
4354 7599 6.980416 AAAGTAGGGGTAGAGCAGTATTAG 57.020 41.667 0.00 0.00 0.00 1.73
4357 7602 4.537945 AGGGGTAGAGCAGTATTAGTGA 57.462 45.455 2.60 0.00 0.00 3.41
4358 7603 4.475345 AGGGGTAGAGCAGTATTAGTGAG 58.525 47.826 2.60 0.00 0.00 3.51
4359 7604 4.079096 AGGGGTAGAGCAGTATTAGTGAGT 60.079 45.833 2.60 0.00 0.00 3.41
4360 7605 5.133999 AGGGGTAGAGCAGTATTAGTGAGTA 59.866 44.000 2.60 0.00 0.00 2.59
4361 7606 5.474189 GGGGTAGAGCAGTATTAGTGAGTAG 59.526 48.000 2.60 0.00 0.00 2.57
4362 7607 5.474189 GGGTAGAGCAGTATTAGTGAGTAGG 59.526 48.000 2.60 0.00 0.00 3.18
4363 7608 6.297582 GGTAGAGCAGTATTAGTGAGTAGGA 58.702 44.000 2.60 0.00 0.00 2.94
4364 7609 6.943718 GGTAGAGCAGTATTAGTGAGTAGGAT 59.056 42.308 2.60 0.00 0.00 3.24
4365 7610 7.120138 GGTAGAGCAGTATTAGTGAGTAGGATC 59.880 44.444 2.60 0.00 0.00 3.36
4366 7611 6.606069 AGAGCAGTATTAGTGAGTAGGATCA 58.394 40.000 2.60 0.00 0.00 2.92
4367 7612 7.063593 AGAGCAGTATTAGTGAGTAGGATCAA 58.936 38.462 2.60 0.00 0.00 2.57
4368 7613 7.230510 AGAGCAGTATTAGTGAGTAGGATCAAG 59.769 40.741 2.60 0.00 0.00 3.02
4369 7614 6.266558 AGCAGTATTAGTGAGTAGGATCAAGG 59.733 42.308 2.60 0.00 0.00 3.61
4370 7615 6.451393 CAGTATTAGTGAGTAGGATCAAGGC 58.549 44.000 0.00 0.00 0.00 4.35
4371 7616 4.965200 ATTAGTGAGTAGGATCAAGGCC 57.035 45.455 0.00 0.00 0.00 5.19
4372 7617 1.115467 AGTGAGTAGGATCAAGGCCG 58.885 55.000 0.00 0.00 0.00 6.13
4373 7618 1.112113 GTGAGTAGGATCAAGGCCGA 58.888 55.000 0.00 0.00 0.00 5.54
4374 7619 1.480954 GTGAGTAGGATCAAGGCCGAA 59.519 52.381 0.00 0.00 0.00 4.30
4375 7620 1.757118 TGAGTAGGATCAAGGCCGAAG 59.243 52.381 0.00 0.00 0.00 3.79
4376 7621 0.466124 AGTAGGATCAAGGCCGAAGC 59.534 55.000 0.00 0.00 38.76 3.86
4413 7658 2.894387 GCGCTGCTGGCCTTAGAG 60.894 66.667 3.32 2.46 37.74 2.43
4414 7659 2.581354 CGCTGCTGGCCTTAGAGT 59.419 61.111 3.32 0.00 37.74 3.24
4415 7660 1.520342 CGCTGCTGGCCTTAGAGTC 60.520 63.158 3.32 0.00 37.74 3.36
4416 7661 1.520342 GCTGCTGGCCTTAGAGTCG 60.520 63.158 3.32 0.00 34.27 4.18
4417 7662 1.893786 CTGCTGGCCTTAGAGTCGT 59.106 57.895 3.32 0.00 0.00 4.34
4418 7663 0.459237 CTGCTGGCCTTAGAGTCGTG 60.459 60.000 3.32 0.00 0.00 4.35
4419 7664 1.811679 GCTGGCCTTAGAGTCGTGC 60.812 63.158 3.32 0.00 0.00 5.34
4420 7665 1.893786 CTGGCCTTAGAGTCGTGCT 59.106 57.895 3.32 0.00 0.00 4.40
4421 7666 0.459237 CTGGCCTTAGAGTCGTGCTG 60.459 60.000 3.32 0.00 0.00 4.41
4422 7667 1.811679 GGCCTTAGAGTCGTGCTGC 60.812 63.158 0.00 0.00 0.00 5.25
4423 7668 1.811679 GCCTTAGAGTCGTGCTGCC 60.812 63.158 0.00 0.00 0.00 4.85
4424 7669 1.153549 CCTTAGAGTCGTGCTGCCC 60.154 63.158 0.00 0.00 0.00 5.36
4425 7670 1.591703 CTTAGAGTCGTGCTGCCCA 59.408 57.895 0.00 0.00 0.00 5.36
4426 7671 0.737715 CTTAGAGTCGTGCTGCCCAC 60.738 60.000 0.00 0.00 41.15 4.61
4427 7672 2.167398 TTAGAGTCGTGCTGCCCACC 62.167 60.000 0.00 0.00 41.53 4.61
4428 7673 4.008933 GAGTCGTGCTGCCCACCT 62.009 66.667 0.00 0.00 41.53 4.00
4429 7674 3.941657 GAGTCGTGCTGCCCACCTC 62.942 68.421 0.00 0.00 41.53 3.85
4430 7675 4.314440 GTCGTGCTGCCCACCTCA 62.314 66.667 0.00 0.00 41.53 3.86
4431 7676 3.321648 TCGTGCTGCCCACCTCAT 61.322 61.111 0.00 0.00 41.53 2.90
4432 7677 3.129502 CGTGCTGCCCACCTCATG 61.130 66.667 0.00 0.00 41.53 3.07
4440 7685 4.247781 CCACCTCATGGGATGTGC 57.752 61.111 0.00 0.00 45.95 4.57
4441 7686 1.303948 CCACCTCATGGGATGTGCA 59.696 57.895 0.00 0.00 45.95 4.57
4442 7687 1.033746 CCACCTCATGGGATGTGCAC 61.034 60.000 10.75 10.75 45.95 4.57
4443 7688 0.034767 CACCTCATGGGATGTGCACT 60.035 55.000 19.41 3.19 33.81 4.40
4444 7689 1.210234 CACCTCATGGGATGTGCACTA 59.790 52.381 19.41 4.84 33.81 2.74
4445 7690 1.487976 ACCTCATGGGATGTGCACTAG 59.512 52.381 19.41 2.77 38.76 2.57
4446 7691 1.590932 CTCATGGGATGTGCACTAGC 58.409 55.000 19.41 7.19 42.57 3.42
4447 7692 4.390523 CCTCATGGGATGTGCACTAGCA 62.391 54.545 19.41 0.00 43.09 3.49
4448 7693 5.639374 CCTCATGGGATGTGCACTAGCAT 62.639 52.174 19.41 2.32 45.57 3.79
4463 7708 6.976088 GCACTAGCATCTACTTTCTATCTGA 58.024 40.000 0.00 0.00 41.58 3.27
4464 7709 7.429633 GCACTAGCATCTACTTTCTATCTGAA 58.570 38.462 0.00 0.00 41.58 3.02
4465 7710 7.923344 GCACTAGCATCTACTTTCTATCTGAAA 59.077 37.037 0.00 0.00 40.37 2.69
4466 7711 9.243637 CACTAGCATCTACTTTCTATCTGAAAC 57.756 37.037 0.00 0.00 39.50 2.78
4467 7712 8.417884 ACTAGCATCTACTTTCTATCTGAAACC 58.582 37.037 0.00 0.00 39.50 3.27
4468 7713 6.276847 AGCATCTACTTTCTATCTGAAACCG 58.723 40.000 0.00 0.00 39.50 4.44
4469 7714 5.050702 GCATCTACTTTCTATCTGAAACCGC 60.051 44.000 0.00 0.00 39.50 5.68
4470 7715 5.007385 TCTACTTTCTATCTGAAACCGCC 57.993 43.478 0.00 0.00 39.50 6.13
4471 7716 3.983044 ACTTTCTATCTGAAACCGCCT 57.017 42.857 0.00 0.00 39.50 5.52
4472 7717 3.863041 ACTTTCTATCTGAAACCGCCTC 58.137 45.455 0.00 0.00 39.50 4.70
4473 7718 2.981859 TTCTATCTGAAACCGCCTCC 57.018 50.000 0.00 0.00 0.00 4.30
4474 7719 2.160721 TCTATCTGAAACCGCCTCCT 57.839 50.000 0.00 0.00 0.00 3.69
4475 7720 3.308035 TCTATCTGAAACCGCCTCCTA 57.692 47.619 0.00 0.00 0.00 2.94
4476 7721 3.223435 TCTATCTGAAACCGCCTCCTAG 58.777 50.000 0.00 0.00 0.00 3.02
4477 7722 1.123928 ATCTGAAACCGCCTCCTAGG 58.876 55.000 0.82 0.82 38.80 3.02
4478 7723 0.040646 TCTGAAACCGCCTCCTAGGA 59.959 55.000 11.98 11.98 37.67 2.94
4479 7724 0.461961 CTGAAACCGCCTCCTAGGAG 59.538 60.000 29.27 29.27 37.67 3.69
4495 7740 8.664211 CTCCTAGGAGGATTGTAATTACAAAC 57.336 38.462 29.44 26.23 44.81 2.93
4496 7741 8.388656 TCCTAGGAGGATTGTAATTACAAACT 57.611 34.615 29.44 27.59 40.06 2.66
4497 7742 8.483758 TCCTAGGAGGATTGTAATTACAAACTC 58.516 37.037 32.67 32.67 44.53 3.01
4512 7757 8.924511 ATTACAAACTCTCTCTTTTCAATGGA 57.075 30.769 0.00 0.00 0.00 3.41
4513 7758 8.746052 TTACAAACTCTCTCTTTTCAATGGAA 57.254 30.769 0.00 0.00 0.00 3.53
4514 7759 7.830099 ACAAACTCTCTCTTTTCAATGGAAT 57.170 32.000 0.00 0.00 31.93 3.01
4515 7760 7.655490 ACAAACTCTCTCTTTTCAATGGAATG 58.345 34.615 0.00 0.00 31.93 2.67
4516 7761 7.503566 ACAAACTCTCTCTTTTCAATGGAATGA 59.496 33.333 0.00 0.00 31.93 2.57
4517 7762 8.355169 CAAACTCTCTCTTTTCAATGGAATGAA 58.645 33.333 0.00 0.00 37.53 2.57
4518 7763 8.469309 AACTCTCTCTTTTCAATGGAATGAAA 57.531 30.769 0.00 0.00 45.07 2.69
4519 7764 7.880105 ACTCTCTCTTTTCAATGGAATGAAAC 58.120 34.615 2.20 0.00 46.06 2.78
4520 7765 6.902341 TCTCTCTTTTCAATGGAATGAAACG 58.098 36.000 2.20 1.68 46.06 3.60
4521 7766 5.460646 TCTCTTTTCAATGGAATGAAACGC 58.539 37.500 2.20 0.00 46.06 4.84
4522 7767 5.009510 TCTCTTTTCAATGGAATGAAACGCA 59.990 36.000 2.20 0.00 46.06 5.24
4523 7768 5.782047 TCTTTTCAATGGAATGAAACGCAT 58.218 33.333 2.20 0.00 46.06 4.73
4524 7769 5.634439 TCTTTTCAATGGAATGAAACGCATG 59.366 36.000 2.20 0.00 46.06 4.06
4525 7770 3.507103 TCAATGGAATGAAACGCATGG 57.493 42.857 0.00 0.00 37.28 3.66
4526 7771 2.166050 TCAATGGAATGAAACGCATGGG 59.834 45.455 8.44 8.44 37.28 4.00
4527 7772 1.851304 ATGGAATGAAACGCATGGGT 58.149 45.000 10.03 10.03 37.28 4.51
4528 7773 1.173043 TGGAATGAAACGCATGGGTC 58.827 50.000 16.57 5.27 37.28 4.46
4529 7774 0.455815 GGAATGAAACGCATGGGTCC 59.544 55.000 16.57 11.47 37.28 4.46
4530 7775 0.455815 GAATGAAACGCATGGGTCCC 59.544 55.000 16.57 11.13 37.28 4.46
4531 7776 0.970427 AATGAAACGCATGGGTCCCC 60.970 55.000 16.57 8.74 37.28 4.81
4532 7777 1.863155 ATGAAACGCATGGGTCCCCT 61.863 55.000 16.57 0.00 35.42 4.79
4533 7778 2.035626 AAACGCATGGGTCCCCTG 59.964 61.111 16.57 7.20 36.94 4.45
4534 7779 4.740822 AACGCATGGGTCCCCTGC 62.741 66.667 24.41 24.41 37.10 4.85
4537 7782 4.740822 GCATGGGTCCCCTGCGTT 62.741 66.667 20.90 0.00 36.94 4.84
4538 7783 2.035626 CATGGGTCCCCTGCGTTT 59.964 61.111 5.13 0.00 36.94 3.60
4539 7784 1.606313 CATGGGTCCCCTGCGTTTT 60.606 57.895 5.13 0.00 36.94 2.43
4540 7785 1.304134 ATGGGTCCCCTGCGTTTTC 60.304 57.895 5.13 0.00 36.94 2.29
4541 7786 1.789576 ATGGGTCCCCTGCGTTTTCT 61.790 55.000 5.13 0.00 36.94 2.52
4542 7787 1.674651 GGGTCCCCTGCGTTTTCTC 60.675 63.158 0.00 0.00 0.00 2.87
4543 7788 1.072505 GGTCCCCTGCGTTTTCTCA 59.927 57.895 0.00 0.00 0.00 3.27
4544 7789 0.536460 GGTCCCCTGCGTTTTCTCAA 60.536 55.000 0.00 0.00 0.00 3.02
4545 7790 1.314730 GTCCCCTGCGTTTTCTCAAA 58.685 50.000 0.00 0.00 0.00 2.69
4546 7791 1.679153 GTCCCCTGCGTTTTCTCAAAA 59.321 47.619 0.00 0.00 0.00 2.44
4547 7792 2.100087 GTCCCCTGCGTTTTCTCAAAAA 59.900 45.455 0.00 0.00 31.13 1.94
4602 7847 4.537135 TGCTGTAGACTTTCCCAGTAAG 57.463 45.455 0.00 0.00 35.01 2.34
4814 8060 3.330267 GCAGTAGACAGTTTTCTCTGGG 58.670 50.000 0.00 0.00 39.48 4.45
5012 8261 9.783081 TCACTATATATCAACTGCATCAATTGT 57.217 29.630 5.13 0.00 0.00 2.71
5019 8268 5.705902 TCAACTGCATCAATTGTGAATGAG 58.294 37.500 5.13 4.90 37.30 2.90
5024 8273 4.100529 GCATCAATTGTGAATGAGAACCG 58.899 43.478 5.13 0.00 37.30 4.44
5025 8274 4.142622 GCATCAATTGTGAATGAGAACCGA 60.143 41.667 5.13 0.00 37.30 4.69
5026 8275 5.327091 CATCAATTGTGAATGAGAACCGAC 58.673 41.667 5.13 0.00 37.30 4.79
5027 8276 3.751175 TCAATTGTGAATGAGAACCGACC 59.249 43.478 5.13 0.00 0.00 4.79
5028 8277 2.920724 TTGTGAATGAGAACCGACCA 57.079 45.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.282157 AGCCAACAGGTTCCTGGTATC 59.718 52.381 20.88 10.59 38.30 2.24
1 2 1.372501 AGCCAACAGGTTCCTGGTAT 58.627 50.000 20.88 6.12 38.30 2.73
2 3 1.145571 AAGCCAACAGGTTCCTGGTA 58.854 50.000 20.88 0.00 38.30 3.25
3 4 0.468029 CAAGCCAACAGGTTCCTGGT 60.468 55.000 20.88 13.32 38.30 4.00
4 5 0.178992 TCAAGCCAACAGGTTCCTGG 60.179 55.000 20.88 7.40 38.30 4.45
5 6 1.542915 CATCAAGCCAACAGGTTCCTG 59.457 52.381 16.25 16.25 39.74 3.86
6 7 1.915141 CATCAAGCCAACAGGTTCCT 58.085 50.000 0.00 0.00 32.61 3.36
7 8 0.244721 GCATCAAGCCAACAGGTTCC 59.755 55.000 0.00 0.00 37.23 3.62
8 9 0.109597 CGCATCAAGCCAACAGGTTC 60.110 55.000 0.00 0.00 41.38 3.62
9 10 1.959085 CGCATCAAGCCAACAGGTT 59.041 52.632 0.00 0.00 41.38 3.50
34 36 5.163405 GGAGGCTTCACATAGACAACTCATA 60.163 44.000 0.00 0.00 0.00 2.15
48 50 0.035630 AGCATGACTGGAGGCTTCAC 60.036 55.000 0.00 0.00 31.34 3.18
59 61 2.437449 TGCAGCCCAAGCATGACT 59.563 55.556 0.00 0.00 43.56 3.41
67 69 1.301874 GCAAGCAAATGCAGCCCAA 60.302 52.632 8.28 0.00 45.70 4.12
154 169 7.442666 GTGGTTTATCAGTAGATCCATTTCCTC 59.557 40.741 0.00 0.00 35.67 3.71
155 170 7.092444 TGTGGTTTATCAGTAGATCCATTTCCT 60.092 37.037 0.00 0.00 35.67 3.36
182 197 6.215845 ACCCAGAAAATCAAACAATCTTTCG 58.784 36.000 0.00 0.00 32.50 3.46
190 206 8.160765 TCTTACATCTACCCAGAAAATCAAACA 58.839 33.333 0.00 0.00 33.50 2.83
200 216 6.239036 CGACATGATTCTTACATCTACCCAGA 60.239 42.308 0.00 0.00 34.56 3.86
202 218 5.596772 TCGACATGATTCTTACATCTACCCA 59.403 40.000 0.00 0.00 0.00 4.51
265 281 5.018539 TCTGGATTGTATTGAAGTACGGG 57.981 43.478 0.00 0.00 0.00 5.28
279 295 4.963276 TTTAGCCGAAACATCTGGATTG 57.037 40.909 0.00 0.00 0.00 2.67
289 305 8.784043 AGATTCCATATATGTTTTAGCCGAAAC 58.216 33.333 11.73 5.77 39.41 2.78
293 964 7.011482 GGCTAGATTCCATATATGTTTTAGCCG 59.989 40.741 20.93 4.95 39.78 5.52
310 981 6.425114 TCGCATCTTTAAATCAGGCTAGATTC 59.575 38.462 11.01 0.00 37.24 2.52
324 995 4.808895 ACGAATAGTGCATCGCATCTTTAA 59.191 37.500 7.32 0.00 41.91 1.52
336 1100 3.006940 GGATGGTTCAACGAATAGTGCA 58.993 45.455 0.00 0.00 0.00 4.57
399 1912 9.563898 CGTGCGTAGTCTATATTGGAATATTTA 57.436 33.333 0.00 0.00 33.78 1.40
400 1913 8.301720 TCGTGCGTAGTCTATATTGGAATATTT 58.698 33.333 0.00 0.00 33.78 1.40
401 1914 7.823665 TCGTGCGTAGTCTATATTGGAATATT 58.176 34.615 0.00 0.00 33.78 1.28
403 1916 6.806388 TCGTGCGTAGTCTATATTGGAATA 57.194 37.500 0.00 0.00 0.00 1.75
404 1917 5.700722 TCGTGCGTAGTCTATATTGGAAT 57.299 39.130 0.00 0.00 0.00 3.01
405 1918 5.503662 TTCGTGCGTAGTCTATATTGGAA 57.496 39.130 0.00 0.00 0.00 3.53
406 1919 5.503662 TTTCGTGCGTAGTCTATATTGGA 57.496 39.130 0.00 0.00 0.00 3.53
408 1921 4.738252 TGCTTTCGTGCGTAGTCTATATTG 59.262 41.667 0.00 0.00 35.36 1.90
410 1923 4.563337 TGCTTTCGTGCGTAGTCTATAT 57.437 40.909 0.00 0.00 35.36 0.86
411 1924 4.359971 TTGCTTTCGTGCGTAGTCTATA 57.640 40.909 0.00 0.00 35.36 1.31
412 1925 2.933495 TGCTTTCGTGCGTAGTCTAT 57.067 45.000 0.00 0.00 35.36 1.98
413 1926 2.710220 TTGCTTTCGTGCGTAGTCTA 57.290 45.000 0.00 0.00 35.36 2.59
414 1927 1.860676 TTTGCTTTCGTGCGTAGTCT 58.139 45.000 0.00 0.00 35.36 3.24
415 1928 2.656192 TTTTGCTTTCGTGCGTAGTC 57.344 45.000 0.00 0.00 35.36 2.59
416 1929 2.546368 TCATTTTGCTTTCGTGCGTAGT 59.454 40.909 0.00 0.00 35.36 2.73
417 1930 3.181826 TCATTTTGCTTTCGTGCGTAG 57.818 42.857 0.00 0.00 35.36 3.51
420 1933 2.979151 TCATTCATTTTGCTTTCGTGCG 59.021 40.909 0.00 0.00 35.36 5.34
421 1934 4.970472 TTCATTCATTTTGCTTTCGTGC 57.030 36.364 0.00 0.00 0.00 5.34
422 1935 6.939551 AGATTCATTCATTTTGCTTTCGTG 57.060 33.333 0.00 0.00 0.00 4.35
423 1936 7.592938 TGTAGATTCATTCATTTTGCTTTCGT 58.407 30.769 0.00 0.00 0.00 3.85
424 1937 8.624701 ATGTAGATTCATTCATTTTGCTTTCG 57.375 30.769 0.00 0.00 0.00 3.46
438 1951 9.935241 ATAGACGCATTCTAAATGTAGATTCAT 57.065 29.630 0.00 0.00 40.38 2.57
496 2009 6.749036 TGGGGAGGAGAGAATACTATTTTC 57.251 41.667 0.00 0.00 0.00 2.29
498 2011 7.713704 ATTTGGGGAGGAGAGAATACTATTT 57.286 36.000 0.00 0.00 0.00 1.40
499 2012 8.814448 TTATTTGGGGAGGAGAGAATACTATT 57.186 34.615 0.00 0.00 0.00 1.73
501 2014 7.290248 CACTTATTTGGGGAGGAGAGAATACTA 59.710 40.741 0.00 0.00 0.00 1.82
503 2016 6.126739 ACACTTATTTGGGGAGGAGAGAATAC 60.127 42.308 0.00 0.00 0.00 1.89
504 2017 5.970640 ACACTTATTTGGGGAGGAGAGAATA 59.029 40.000 0.00 0.00 0.00 1.75
506 2019 4.175962 ACACTTATTTGGGGAGGAGAGAA 58.824 43.478 0.00 0.00 0.00 2.87
507 2020 3.775316 GACACTTATTTGGGGAGGAGAGA 59.225 47.826 0.00 0.00 0.00 3.10
508 2021 3.777522 AGACACTTATTTGGGGAGGAGAG 59.222 47.826 0.00 0.00 0.00 3.20
509 2022 3.775316 GAGACACTTATTTGGGGAGGAGA 59.225 47.826 0.00 0.00 0.00 3.71
510 2023 3.777522 AGAGACACTTATTTGGGGAGGAG 59.222 47.826 0.00 0.00 0.00 3.69
512 2025 4.576330 AAGAGACACTTATTTGGGGAGG 57.424 45.455 0.00 0.00 37.03 4.30
513 2026 6.301169 AGTAAGAGACACTTATTTGGGGAG 57.699 41.667 0.00 0.00 42.11 4.30
515 2028 6.472887 TGAAGTAAGAGACACTTATTTGGGG 58.527 40.000 5.38 0.00 42.11 4.96
516 2029 9.099454 GTATGAAGTAAGAGACACTTATTTGGG 57.901 37.037 5.38 0.00 42.11 4.12
517 2030 9.877178 AGTATGAAGTAAGAGACACTTATTTGG 57.123 33.333 5.38 0.00 42.11 3.28
601 3436 8.894592 ACTCCCTTCATCCATAATGTACATTAT 58.105 33.333 27.97 27.97 42.86 1.28
603 3438 7.154191 ACTCCCTTCATCCATAATGTACATT 57.846 36.000 23.80 23.80 36.68 2.71
604 3439 6.770286 ACTCCCTTCATCCATAATGTACAT 57.230 37.500 1.41 1.41 36.68 2.29
605 3440 6.844388 AGTACTCCCTTCATCCATAATGTACA 59.156 38.462 0.00 0.00 36.68 2.90
606 3441 7.304497 AGTACTCCCTTCATCCATAATGTAC 57.696 40.000 0.00 0.00 36.68 2.90
607 3442 7.931015 AAGTACTCCCTTCATCCATAATGTA 57.069 36.000 0.00 0.00 36.68 2.29
608 3443 6.831664 AAGTACTCCCTTCATCCATAATGT 57.168 37.500 0.00 0.00 36.68 2.71
609 3444 7.512992 AGAAAGTACTCCCTTCATCCATAATG 58.487 38.462 8.19 0.00 36.65 1.90
610 3445 7.698163 AGAAAGTACTCCCTTCATCCATAAT 57.302 36.000 8.19 0.00 0.00 1.28
612 3447 7.363031 AGTAGAAAGTACTCCCTTCATCCATA 58.637 38.462 8.19 0.00 0.00 2.74
616 3451 8.296211 AGTTAGTAGAAAGTACTCCCTTCATC 57.704 38.462 8.19 1.97 0.00 2.92
617 3452 8.532819 CAAGTTAGTAGAAAGTACTCCCTTCAT 58.467 37.037 8.19 0.00 0.00 2.57
618 3453 7.727186 TCAAGTTAGTAGAAAGTACTCCCTTCA 59.273 37.037 8.19 0.00 0.00 3.02
619 3454 8.120140 TCAAGTTAGTAGAAAGTACTCCCTTC 57.880 38.462 0.00 0.00 0.00 3.46
620 3455 7.949006 TCTCAAGTTAGTAGAAAGTACTCCCTT 59.051 37.037 0.00 0.00 0.00 3.95
622 3457 7.148035 CCTCTCAAGTTAGTAGAAAGTACTCCC 60.148 44.444 0.00 0.00 0.00 4.30
623 3458 7.611079 TCCTCTCAAGTTAGTAGAAAGTACTCC 59.389 40.741 0.00 0.00 0.00 3.85
624 3459 8.564509 TCCTCTCAAGTTAGTAGAAAGTACTC 57.435 38.462 0.00 0.00 0.00 2.59
626 3461 8.453320 GTCTCCTCTCAAGTTAGTAGAAAGTAC 58.547 40.741 0.00 0.00 0.00 2.73
627 3462 8.162085 TGTCTCCTCTCAAGTTAGTAGAAAGTA 58.838 37.037 0.00 0.00 0.00 2.24
629 3464 7.175990 AGTGTCTCCTCTCAAGTTAGTAGAAAG 59.824 40.741 0.00 0.00 0.00 2.62
630 3465 7.005296 AGTGTCTCCTCTCAAGTTAGTAGAAA 58.995 38.462 0.00 0.00 0.00 2.52
632 3467 6.129414 AGTGTCTCCTCTCAAGTTAGTAGA 57.871 41.667 0.00 0.00 0.00 2.59
633 3468 6.827586 AAGTGTCTCCTCTCAAGTTAGTAG 57.172 41.667 0.00 0.00 0.00 2.57
634 3469 6.370994 CGTAAGTGTCTCCTCTCAAGTTAGTA 59.629 42.308 0.00 0.00 0.00 1.82
635 3470 5.181622 CGTAAGTGTCTCCTCTCAAGTTAGT 59.818 44.000 0.00 0.00 0.00 2.24
636 3471 5.632959 CGTAAGTGTCTCCTCTCAAGTTAG 58.367 45.833 0.00 0.00 0.00 2.34
638 3473 3.305471 GCGTAAGTGTCTCCTCTCAAGTT 60.305 47.826 0.00 0.00 41.68 2.66
639 3474 2.229302 GCGTAAGTGTCTCCTCTCAAGT 59.771 50.000 0.00 0.00 41.68 3.16
641 3476 2.488545 GAGCGTAAGTGTCTCCTCTCAA 59.511 50.000 0.00 0.00 41.68 3.02
642 3477 2.085320 GAGCGTAAGTGTCTCCTCTCA 58.915 52.381 0.00 0.00 41.68 3.27
643 3478 2.085320 TGAGCGTAAGTGTCTCCTCTC 58.915 52.381 0.00 0.00 41.68 3.20
644 3479 2.201921 TGAGCGTAAGTGTCTCCTCT 57.798 50.000 0.00 0.00 41.68 3.69
939 3774 4.778415 CGGACACCAGGACGCGAG 62.778 72.222 15.93 0.00 0.00 5.03
943 3778 4.436998 GGAGCGGACACCAGGACG 62.437 72.222 0.00 0.00 0.00 4.79
944 3779 3.311110 TGGAGCGGACACCAGGAC 61.311 66.667 0.00 0.00 32.22 3.85
950 4102 1.939769 GAGGTCTCTGGAGCGGACAC 61.940 65.000 0.00 0.00 43.89 3.67
1032 4186 4.807039 GGCGGTTTAGCGAGGCGA 62.807 66.667 5.41 0.00 38.18 5.54
1133 4334 1.886886 TTTGTTTACCTGGAGACGGC 58.113 50.000 0.00 0.00 34.42 5.68
1218 4419 0.792640 AGCGCTGAGACATTTCAACG 59.207 50.000 10.39 0.00 39.10 4.10
1236 4437 3.864686 CGGAAATGCGCCGGTGAG 61.865 66.667 21.76 4.02 44.87 3.51
1244 4445 4.612536 GCGGATGGCGGAAATGCG 62.613 66.667 0.00 0.00 41.23 4.73
1267 4468 3.917760 GATCGCAGGGAGGGACGG 61.918 72.222 0.00 0.00 42.47 4.79
1291 4492 2.039084 GCCCGATTCCCATCATAGACTT 59.961 50.000 0.00 0.00 0.00 3.01
1300 4501 3.148084 CTACCGCCCGATTCCCAT 58.852 61.111 0.00 0.00 0.00 4.00
1313 4514 1.694150 TGGGATCATACTGCTGCTACC 59.306 52.381 0.00 0.00 0.00 3.18
1321 4522 3.341823 GCCTTATGCTGGGATCATACTG 58.658 50.000 0.00 0.00 36.87 2.74
1324 4525 1.278985 CGGCCTTATGCTGGGATCATA 59.721 52.381 0.00 0.00 43.04 2.15
1351 4552 2.787249 CGCCGCAAGTTCATCCAG 59.213 61.111 0.00 0.00 0.00 3.86
1426 4627 5.826737 ACTCAATAGGAAATCCAGAATGCAG 59.173 40.000 1.67 0.00 38.89 4.41
1449 4650 5.617751 GCAGGTATGAATTCCATTCGCATAC 60.618 44.000 2.27 0.00 42.15 2.39
1455 4656 4.037208 CACTGGCAGGTATGAATTCCATTC 59.963 45.833 20.34 0.00 39.70 2.67
1462 4663 0.253044 ACGCACTGGCAGGTATGAAT 59.747 50.000 20.34 0.00 41.24 2.57
1480 4681 5.908916 GCATACTAAGCCAAGTAGCTAAC 57.091 43.478 0.00 0.00 44.11 2.34
1502 4703 4.568359 CACTTCCTAGACGAACAATGATGG 59.432 45.833 0.00 0.00 0.00 3.51
1507 4708 4.189639 GTCCACTTCCTAGACGAACAAT 57.810 45.455 0.00 0.00 0.00 2.71
1520 4721 0.741221 GCCATGAGGTCGTCCACTTC 60.741 60.000 0.51 0.00 37.19 3.01
1550 4751 4.432712 CATAAGCCTAAACACAAATGCCC 58.567 43.478 0.00 0.00 0.00 5.36
1573 4774 1.908793 ACTCAGGGACGGTGTCTGG 60.909 63.158 7.26 2.66 32.47 3.86
1596 4797 2.958213 CTTGAGTTGTCTCTCTCAGGC 58.042 52.381 0.00 0.00 40.91 4.85
1611 4812 1.461127 GAACTAGTGCAACGGCTTGAG 59.539 52.381 0.00 0.00 45.86 3.02
1621 4822 3.119459 CGAAAGCCTAGAGAACTAGTGCA 60.119 47.826 3.00 0.00 43.10 4.57
1680 4881 5.751243 ACGAGCTTGTTTGTTATTCAGTT 57.249 34.783 0.00 0.00 0.00 3.16
1690 4893 0.179282 GCGACGTACGAGCTTGTTTG 60.179 55.000 24.41 7.79 45.77 2.93
1836 5040 8.329203 TCTAAACAAGGTTTTGCAATTTTGTT 57.671 26.923 17.80 17.80 39.59 2.83
1838 5042 9.224058 CATTCTAAACAAGGTTTTGCAATTTTG 57.776 29.630 0.00 5.65 37.85 2.44
2086 5294 3.496870 CCCCTTCAACACTTTGCTCTAGT 60.497 47.826 0.00 0.00 32.17 2.57
2129 5337 3.831911 TCCCCCTTGAACATAAAGCAAAG 59.168 43.478 0.00 0.00 0.00 2.77
2157 5365 9.665719 ACAAACAAAATCACTGGAAAAATAACT 57.334 25.926 0.00 0.00 0.00 2.24
2159 5367 8.887717 CCACAAACAAAATCACTGGAAAAATAA 58.112 29.630 0.00 0.00 0.00 1.40
2162 5370 6.234177 ACCACAAACAAAATCACTGGAAAAA 58.766 32.000 0.00 0.00 0.00 1.94
2203 5411 6.599244 TGGTAATCTAATGCAGAGACAAAAGG 59.401 38.462 3.33 0.00 36.48 3.11
2435 5646 7.166167 CCATGTCATCCTTCTCATCAATATCA 58.834 38.462 0.00 0.00 0.00 2.15
2519 5730 0.336392 GGAATCCCCAGCCCTTCTTT 59.664 55.000 0.00 0.00 34.14 2.52
2770 5981 1.377987 GCCGGCTTTGGTGTATCCA 60.378 57.895 22.15 0.00 45.60 3.41
2943 6154 9.894783 CTGAAATAAGGCATGAATGAAGATAAG 57.105 33.333 0.00 0.00 0.00 1.73
3167 6378 8.796475 AGCAAAATACAACATTCACTGAGTTAT 58.204 29.630 0.00 0.00 0.00 1.89
3267 6478 3.695556 GGACAGAGGGAGTAGTACAGAAC 59.304 52.174 2.52 0.00 0.00 3.01
3344 6576 9.104965 CCGTCCATAATATAAGAGTGTTTTTGA 57.895 33.333 0.00 0.00 0.00 2.69
3345 6577 9.104965 TCCGTCCATAATATAAGAGTGTTTTTG 57.895 33.333 0.00 0.00 0.00 2.44
3346 6578 9.326413 CTCCGTCCATAATATAAGAGTGTTTTT 57.674 33.333 0.00 0.00 0.00 1.94
3347 6579 7.931948 CCTCCGTCCATAATATAAGAGTGTTTT 59.068 37.037 0.00 0.00 0.00 2.43
3348 6580 7.442656 CCTCCGTCCATAATATAAGAGTGTTT 58.557 38.462 0.00 0.00 0.00 2.83
3349 6581 6.014499 CCCTCCGTCCATAATATAAGAGTGTT 60.014 42.308 0.00 0.00 0.00 3.32
3350 6582 5.480772 CCCTCCGTCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
3351 6583 5.715279 TCCCTCCGTCCATAATATAAGAGTG 59.285 44.000 0.00 0.00 0.00 3.51
3352 6584 5.900437 TCCCTCCGTCCATAATATAAGAGT 58.100 41.667 0.00 0.00 0.00 3.24
3353 6585 5.952947 ACTCCCTCCGTCCATAATATAAGAG 59.047 44.000 0.00 0.00 0.00 2.85
3354 6586 5.900437 ACTCCCTCCGTCCATAATATAAGA 58.100 41.667 0.00 0.00 0.00 2.10
3355 6587 6.890814 ACTACTCCCTCCGTCCATAATATAAG 59.109 42.308 0.00 0.00 0.00 1.73
3356 6588 6.797707 ACTACTCCCTCCGTCCATAATATAA 58.202 40.000 0.00 0.00 0.00 0.98
3357 6589 6.398655 ACTACTCCCTCCGTCCATAATATA 57.601 41.667 0.00 0.00 0.00 0.86
3358 6590 5.272405 ACTACTCCCTCCGTCCATAATAT 57.728 43.478 0.00 0.00 0.00 1.28
3359 6591 4.736611 ACTACTCCCTCCGTCCATAATA 57.263 45.455 0.00 0.00 0.00 0.98
3360 6592 3.614568 ACTACTCCCTCCGTCCATAAT 57.385 47.619 0.00 0.00 0.00 1.28
3361 6593 3.393426 AACTACTCCCTCCGTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
3362 6594 3.393426 AAACTACTCCCTCCGTCCATA 57.607 47.619 0.00 0.00 0.00 2.74
3363 6595 2.249309 AAACTACTCCCTCCGTCCAT 57.751 50.000 0.00 0.00 0.00 3.41
3364 6596 2.042162 AGTAAACTACTCCCTCCGTCCA 59.958 50.000 0.00 0.00 32.47 4.02
3365 6597 2.732763 AGTAAACTACTCCCTCCGTCC 58.267 52.381 0.00 0.00 32.47 4.79
3366 6598 6.939163 TGATATAGTAAACTACTCCCTCCGTC 59.061 42.308 0.00 0.00 40.14 4.79
3367 6599 6.845908 TGATATAGTAAACTACTCCCTCCGT 58.154 40.000 0.00 0.00 40.14 4.69
3368 6600 6.941436 ACTGATATAGTAAACTACTCCCTCCG 59.059 42.308 0.00 0.00 40.14 4.63
3369 6601 8.165397 AGACTGATATAGTAAACTACTCCCTCC 58.835 40.741 0.00 0.00 40.53 4.30
3370 6602 9.577222 AAGACTGATATAGTAAACTACTCCCTC 57.423 37.037 0.00 0.00 40.53 4.30
3371 6603 9.357161 CAAGACTGATATAGTAAACTACTCCCT 57.643 37.037 0.00 0.00 40.53 4.20
3372 6604 8.083462 GCAAGACTGATATAGTAAACTACTCCC 58.917 40.741 0.00 0.00 40.53 4.30
3373 6605 8.852135 AGCAAGACTGATATAGTAAACTACTCC 58.148 37.037 0.00 0.00 40.53 3.85
3505 6750 7.521669 AGACAAATATTTAGGAATGGAGGGAG 58.478 38.462 0.00 0.00 0.00 4.30
3506 6751 7.465900 AGACAAATATTTAGGAATGGAGGGA 57.534 36.000 0.00 0.00 0.00 4.20
3507 6752 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
3523 6768 9.918630 CCATTTGAAATCTCTGTAAAGACAAAT 57.081 29.630 0.00 0.00 33.34 2.32
3524 6769 9.130661 TCCATTTGAAATCTCTGTAAAGACAAA 57.869 29.630 0.00 0.00 34.35 2.83
3525 6770 8.567948 GTCCATTTGAAATCTCTGTAAAGACAA 58.432 33.333 0.00 0.00 34.35 3.18
3526 6771 7.939039 AGTCCATTTGAAATCTCTGTAAAGACA 59.061 33.333 0.00 0.00 0.00 3.41
3527 6772 8.329203 AGTCCATTTGAAATCTCTGTAAAGAC 57.671 34.615 0.00 0.00 0.00 3.01
3528 6773 9.436957 GTAGTCCATTTGAAATCTCTGTAAAGA 57.563 33.333 0.00 0.00 0.00 2.52
3529 6774 8.669243 GGTAGTCCATTTGAAATCTCTGTAAAG 58.331 37.037 0.00 0.00 0.00 1.85
3530 6775 8.160765 TGGTAGTCCATTTGAAATCTCTGTAAA 58.839 33.333 0.00 0.00 39.03 2.01
3531 6776 7.606456 GTGGTAGTCCATTTGAAATCTCTGTAA 59.394 37.037 0.00 0.00 46.20 2.41
3532 6777 7.103641 GTGGTAGTCCATTTGAAATCTCTGTA 58.896 38.462 0.00 0.00 46.20 2.74
3533 6778 5.940470 GTGGTAGTCCATTTGAAATCTCTGT 59.060 40.000 0.00 0.00 46.20 3.41
3534 6779 5.939883 TGTGGTAGTCCATTTGAAATCTCTG 59.060 40.000 0.00 0.00 46.20 3.35
3535 6780 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
3536 6781 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
3537 6782 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
3538 6783 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
3539 6784 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
3540 6785 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
3541 6786 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
3542 6787 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
3543 6788 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
3544 6789 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
3545 6790 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
3546 6791 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
3547 6792 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
3548 6793 4.500603 CTACATCCGTATGTGGTAGTCC 57.499 50.000 3.56 0.00 45.99 3.85
3554 6799 8.502105 TGTCTATATACTACATCCGTATGTGG 57.498 38.462 3.56 3.20 45.99 4.17
3589 6834 5.393962 GGAGCAAAATGAGTGAATGTACAC 58.606 41.667 0.00 0.00 40.60 2.90
3590 6835 4.154015 CGGAGCAAAATGAGTGAATGTACA 59.846 41.667 0.00 0.00 0.00 2.90
3591 6836 4.154195 ACGGAGCAAAATGAGTGAATGTAC 59.846 41.667 0.00 0.00 0.00 2.90
3592 6837 4.323417 ACGGAGCAAAATGAGTGAATGTA 58.677 39.130 0.00 0.00 0.00 2.29
3593 6838 3.149196 ACGGAGCAAAATGAGTGAATGT 58.851 40.909 0.00 0.00 0.00 2.71
3594 6839 3.837213 ACGGAGCAAAATGAGTGAATG 57.163 42.857 0.00 0.00 0.00 2.67
3595 6840 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3596 6841 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3597 6842 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3598 6843 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3599 6844 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3600 6845 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3601 6846 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3602 6847 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3603 6848 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3604 6849 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3605 6850 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3606 6851 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3607 6852 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3608 6853 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3609 6854 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3610 6855 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3611 6856 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3612 6857 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3613 6858 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3615 6860 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3616 6861 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3617 6862 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3618 6863 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3619 6864 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3620 6865 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3621 6866 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3622 6867 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3623 6868 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3636 6881 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3637 6882 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3638 6883 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3639 6884 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3640 6885 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3641 6886 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3642 6887 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3643 6888 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3644 6889 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3645 6890 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3646 6891 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3647 6892 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3648 6893 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
3649 6894 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3650 6895 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3651 6896 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3652 6897 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3653 6898 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3654 6899 2.024655 ACATGTACTCCCTCCGTTCCTA 60.025 50.000 0.00 0.00 0.00 2.94
3655 6900 1.273098 ACATGTACTCCCTCCGTTCCT 60.273 52.381 0.00 0.00 0.00 3.36
3656 6901 1.192428 ACATGTACTCCCTCCGTTCC 58.808 55.000 0.00 0.00 0.00 3.62
3657 6902 4.369182 CATAACATGTACTCCCTCCGTTC 58.631 47.826 0.00 0.00 0.00 3.95
3658 6903 3.431766 GCATAACATGTACTCCCTCCGTT 60.432 47.826 0.00 0.00 0.00 4.44
3659 6904 2.102588 GCATAACATGTACTCCCTCCGT 59.897 50.000 0.00 0.00 0.00 4.69
3660 6905 2.102420 TGCATAACATGTACTCCCTCCG 59.898 50.000 0.00 0.00 0.00 4.63
3661 6906 3.467803 GTGCATAACATGTACTCCCTCC 58.532 50.000 0.00 0.00 41.79 4.30
3668 6913 5.869344 TCTCAGTCAAGTGCATAACATGTAC 59.131 40.000 0.00 0.00 44.79 2.90
3669 6914 5.869344 GTCTCAGTCAAGTGCATAACATGTA 59.131 40.000 0.00 0.00 0.00 2.29
3670 6915 4.692625 GTCTCAGTCAAGTGCATAACATGT 59.307 41.667 0.00 0.00 0.00 3.21
3910 7155 3.555956 CGTGGACTAACACATAATGCTCC 59.444 47.826 0.00 0.00 41.38 4.70
3978 7223 9.487790 CAAAGGTTATTGTTATCATGGTTTGTT 57.512 29.630 0.00 0.00 0.00 2.83
4018 7263 9.601217 ACATCGATAGCTGTAACTAGAAAAATT 57.399 29.630 0.00 0.00 44.74 1.82
4022 7267 7.329588 TGACATCGATAGCTGTAACTAGAAA 57.670 36.000 0.00 0.00 46.84 2.52
4137 7382 4.798907 AGCACAACATTTAGATACGACTCG 59.201 41.667 0.00 0.00 0.00 4.18
4196 7441 7.737395 TCCACAAATAATGCAAAATTAAAGCG 58.263 30.769 0.00 0.00 0.00 4.68
4354 7599 1.112113 TCGGCCTTGATCCTACTCAC 58.888 55.000 0.00 0.00 0.00 3.51
4357 7602 0.466124 GCTTCGGCCTTGATCCTACT 59.534 55.000 0.00 0.00 34.32 2.57
4358 7603 2.993539 GCTTCGGCCTTGATCCTAC 58.006 57.895 0.00 0.00 34.32 3.18
4396 7641 2.894387 CTCTAAGGCCAGCAGCGC 60.894 66.667 5.01 0.00 45.17 5.92
4397 7642 1.520342 GACTCTAAGGCCAGCAGCG 60.520 63.158 5.01 0.00 45.17 5.18
4398 7643 1.520342 CGACTCTAAGGCCAGCAGC 60.520 63.158 5.01 0.00 42.60 5.25
4399 7644 0.459237 CACGACTCTAAGGCCAGCAG 60.459 60.000 5.01 0.00 0.00 4.24
4400 7645 1.591703 CACGACTCTAAGGCCAGCA 59.408 57.895 5.01 0.00 0.00 4.41
4401 7646 1.811679 GCACGACTCTAAGGCCAGC 60.812 63.158 5.01 0.00 0.00 4.85
4402 7647 0.459237 CAGCACGACTCTAAGGCCAG 60.459 60.000 5.01 0.00 0.00 4.85
4403 7648 1.591703 CAGCACGACTCTAAGGCCA 59.408 57.895 5.01 0.00 0.00 5.36
4404 7649 1.811679 GCAGCACGACTCTAAGGCC 60.812 63.158 0.00 0.00 0.00 5.19
4405 7650 1.811679 GGCAGCACGACTCTAAGGC 60.812 63.158 0.00 0.00 0.00 4.35
4406 7651 1.153549 GGGCAGCACGACTCTAAGG 60.154 63.158 0.00 0.00 0.00 2.69
4407 7652 0.737715 GTGGGCAGCACGACTCTAAG 60.738 60.000 0.00 0.00 0.00 2.18
4408 7653 1.292223 GTGGGCAGCACGACTCTAA 59.708 57.895 0.00 0.00 0.00 2.10
4409 7654 2.646175 GGTGGGCAGCACGACTCTA 61.646 63.158 0.00 0.00 0.00 2.43
4410 7655 4.008933 GGTGGGCAGCACGACTCT 62.009 66.667 0.00 0.00 0.00 3.24
4411 7656 3.941657 GAGGTGGGCAGCACGACTC 62.942 68.421 2.95 2.95 0.00 3.36
4412 7657 4.008933 GAGGTGGGCAGCACGACT 62.009 66.667 0.00 0.00 0.00 4.18
4413 7658 3.612247 ATGAGGTGGGCAGCACGAC 62.612 63.158 0.00 0.00 0.00 4.34
4414 7659 3.321648 ATGAGGTGGGCAGCACGA 61.322 61.111 0.00 0.00 0.00 4.35
4415 7660 3.129502 CATGAGGTGGGCAGCACG 61.130 66.667 0.00 0.00 0.00 5.34
4416 7661 2.753043 CCATGAGGTGGGCAGCAC 60.753 66.667 0.00 0.00 44.79 4.40
4425 7670 1.487976 CTAGTGCACATCCCATGAGGT 59.512 52.381 21.04 0.00 35.52 3.85
4426 7671 1.813092 GCTAGTGCACATCCCATGAGG 60.813 57.143 21.04 0.00 39.41 3.86
4427 7672 1.134310 TGCTAGTGCACATCCCATGAG 60.134 52.381 21.04 3.92 45.31 2.90
4428 7673 0.911053 TGCTAGTGCACATCCCATGA 59.089 50.000 21.04 0.00 45.31 3.07
4429 7674 3.482147 TGCTAGTGCACATCCCATG 57.518 52.632 21.04 1.75 45.31 3.66
4438 7683 7.068716 TTCAGATAGAAAGTAGATGCTAGTGCA 59.931 37.037 0.00 0.00 42.91 4.57
4439 7684 6.976088 TCAGATAGAAAGTAGATGCTAGTGC 58.024 40.000 0.00 0.00 40.20 4.40
4440 7685 9.243637 GTTTCAGATAGAAAGTAGATGCTAGTG 57.756 37.037 0.00 0.00 46.34 2.74
4441 7686 8.417884 GGTTTCAGATAGAAAGTAGATGCTAGT 58.582 37.037 0.00 0.00 46.34 2.57
4442 7687 7.593273 CGGTTTCAGATAGAAAGTAGATGCTAG 59.407 40.741 0.00 0.00 46.34 3.42
4443 7688 7.426410 CGGTTTCAGATAGAAAGTAGATGCTA 58.574 38.462 0.00 0.00 46.34 3.49
4444 7689 6.276847 CGGTTTCAGATAGAAAGTAGATGCT 58.723 40.000 0.00 0.00 46.34 3.79
4445 7690 5.050702 GCGGTTTCAGATAGAAAGTAGATGC 60.051 44.000 0.00 0.00 46.34 3.91
4446 7691 5.463724 GGCGGTTTCAGATAGAAAGTAGATG 59.536 44.000 0.00 0.00 46.34 2.90
4447 7692 5.364157 AGGCGGTTTCAGATAGAAAGTAGAT 59.636 40.000 0.00 0.00 46.34 1.98
4448 7693 4.710375 AGGCGGTTTCAGATAGAAAGTAGA 59.290 41.667 0.00 0.00 46.34 2.59
4449 7694 5.012328 AGGCGGTTTCAGATAGAAAGTAG 57.988 43.478 0.00 0.00 46.34 2.57
4450 7695 4.142004 GGAGGCGGTTTCAGATAGAAAGTA 60.142 45.833 0.00 0.00 46.34 2.24
4451 7696 3.369576 GGAGGCGGTTTCAGATAGAAAGT 60.370 47.826 0.00 0.00 46.34 2.66
4452 7697 3.118592 AGGAGGCGGTTTCAGATAGAAAG 60.119 47.826 0.00 0.00 46.34 2.62
4453 7698 2.838202 AGGAGGCGGTTTCAGATAGAAA 59.162 45.455 0.00 0.00 43.71 2.52
4454 7699 2.467880 AGGAGGCGGTTTCAGATAGAA 58.532 47.619 0.00 0.00 0.00 2.10
4455 7700 2.160721 AGGAGGCGGTTTCAGATAGA 57.839 50.000 0.00 0.00 0.00 1.98
4456 7701 2.297597 CCTAGGAGGCGGTTTCAGATAG 59.702 54.545 1.05 0.00 0.00 2.08
4457 7702 2.091499 TCCTAGGAGGCGGTTTCAGATA 60.091 50.000 7.62 0.00 34.61 1.98
4458 7703 1.123928 CCTAGGAGGCGGTTTCAGAT 58.876 55.000 1.05 0.00 0.00 2.90
4459 7704 0.040646 TCCTAGGAGGCGGTTTCAGA 59.959 55.000 7.62 0.00 34.61 3.27
4460 7705 0.461961 CTCCTAGGAGGCGGTTTCAG 59.538 60.000 28.68 1.89 38.51 3.02
4461 7706 2.591915 CTCCTAGGAGGCGGTTTCA 58.408 57.895 28.68 0.00 38.51 2.69
4472 7717 8.487028 AGAGTTTGTAATTACAATCCTCCTAGG 58.513 37.037 31.00 0.82 44.72 3.02
4473 7718 9.535878 GAGAGTTTGTAATTACAATCCTCCTAG 57.464 37.037 31.00 0.00 44.72 3.02
4474 7719 9.268282 AGAGAGTTTGTAATTACAATCCTCCTA 57.732 33.333 31.00 17.49 44.72 2.94
4475 7720 8.152023 AGAGAGTTTGTAATTACAATCCTCCT 57.848 34.615 31.00 26.84 44.72 3.69
4476 7721 8.261522 AGAGAGAGTTTGTAATTACAATCCTCC 58.738 37.037 31.00 25.88 44.72 4.30
4477 7722 9.660180 AAGAGAGAGTTTGTAATTACAATCCTC 57.340 33.333 29.46 29.46 44.72 3.71
4486 7731 9.354673 TCCATTGAAAAGAGAGAGTTTGTAATT 57.645 29.630 0.00 0.00 0.00 1.40
4487 7732 8.924511 TCCATTGAAAAGAGAGAGTTTGTAAT 57.075 30.769 0.00 0.00 0.00 1.89
4488 7733 8.746052 TTCCATTGAAAAGAGAGAGTTTGTAA 57.254 30.769 0.00 0.00 0.00 2.41
4489 7734 8.786898 CATTCCATTGAAAAGAGAGAGTTTGTA 58.213 33.333 0.00 0.00 33.32 2.41
4490 7735 7.503566 TCATTCCATTGAAAAGAGAGAGTTTGT 59.496 33.333 0.00 0.00 33.32 2.83
4491 7736 7.879070 TCATTCCATTGAAAAGAGAGAGTTTG 58.121 34.615 0.00 0.00 33.32 2.93
4492 7737 8.469309 TTCATTCCATTGAAAAGAGAGAGTTT 57.531 30.769 0.00 0.00 32.82 2.66
4493 7738 8.355913 GTTTCATTCCATTGAAAAGAGAGAGTT 58.644 33.333 1.52 0.00 44.71 3.01
4494 7739 7.308229 CGTTTCATTCCATTGAAAAGAGAGAGT 60.308 37.037 6.93 0.00 44.71 3.24
4495 7740 7.020010 CGTTTCATTCCATTGAAAAGAGAGAG 58.980 38.462 6.93 0.00 44.71 3.20
4496 7741 6.568462 GCGTTTCATTCCATTGAAAAGAGAGA 60.568 38.462 14.20 0.00 44.71 3.10
4497 7742 5.570589 GCGTTTCATTCCATTGAAAAGAGAG 59.429 40.000 14.20 2.15 44.71 3.20
4498 7743 5.009510 TGCGTTTCATTCCATTGAAAAGAGA 59.990 36.000 14.20 1.07 44.71 3.10
4499 7744 5.221880 TGCGTTTCATTCCATTGAAAAGAG 58.778 37.500 14.20 5.83 44.71 2.85
4500 7745 5.193663 TGCGTTTCATTCCATTGAAAAGA 57.806 34.783 14.20 0.00 44.71 2.52
4501 7746 5.163933 CCATGCGTTTCATTCCATTGAAAAG 60.164 40.000 8.01 8.01 44.71 2.27
4502 7747 4.689812 CCATGCGTTTCATTCCATTGAAAA 59.310 37.500 1.52 0.00 44.71 2.29
4503 7748 4.244066 CCATGCGTTTCATTCCATTGAAA 58.756 39.130 0.00 0.00 41.92 2.69
4504 7749 3.368220 CCCATGCGTTTCATTCCATTGAA 60.368 43.478 0.00 0.00 33.89 2.69
4505 7750 2.166050 CCCATGCGTTTCATTCCATTGA 59.834 45.455 0.00 0.00 31.79 2.57
4506 7751 2.094078 ACCCATGCGTTTCATTCCATTG 60.094 45.455 0.00 0.00 31.79 2.82
4507 7752 2.166254 GACCCATGCGTTTCATTCCATT 59.834 45.455 0.00 0.00 31.79 3.16
4508 7753 1.750778 GACCCATGCGTTTCATTCCAT 59.249 47.619 0.00 0.00 31.79 3.41
4509 7754 1.173043 GACCCATGCGTTTCATTCCA 58.827 50.000 0.00 0.00 31.79 3.53
4510 7755 0.455815 GGACCCATGCGTTTCATTCC 59.544 55.000 0.00 0.00 31.79 3.01
4511 7756 0.455815 GGGACCCATGCGTTTCATTC 59.544 55.000 5.33 0.00 31.79 2.67
4512 7757 2.578683 GGGACCCATGCGTTTCATT 58.421 52.632 5.33 0.00 31.79 2.57
4513 7758 4.337013 GGGACCCATGCGTTTCAT 57.663 55.556 5.33 0.00 35.31 2.57
4525 7770 5.050975 TTTTTGAGAAAACGCAGGGGACC 62.051 47.826 0.00 0.00 38.19 4.46
4526 7771 1.314730 TTTGAGAAAACGCAGGGGAC 58.685 50.000 0.00 0.00 0.00 4.46
4527 7772 2.060050 TTTTGAGAAAACGCAGGGGA 57.940 45.000 0.00 0.00 0.00 4.81
4528 7773 2.880963 TTTTTGAGAAAACGCAGGGG 57.119 45.000 0.00 0.00 30.07 4.79
4555 7800 5.124936 AGGTCAACAGCGTAGTTTTCTTTTT 59.875 36.000 0.00 0.00 0.00 1.94
4556 7801 4.638865 AGGTCAACAGCGTAGTTTTCTTTT 59.361 37.500 0.00 0.00 0.00 2.27
4557 7802 4.196971 AGGTCAACAGCGTAGTTTTCTTT 58.803 39.130 0.00 0.00 0.00 2.52
4558 7803 3.805207 AGGTCAACAGCGTAGTTTTCTT 58.195 40.909 0.00 0.00 0.00 2.52
4559 7804 3.470645 AGGTCAACAGCGTAGTTTTCT 57.529 42.857 0.00 0.00 0.00 2.52
4560 7805 4.435651 GCATAGGTCAACAGCGTAGTTTTC 60.436 45.833 0.00 0.00 0.00 2.29
4561 7806 3.435671 GCATAGGTCAACAGCGTAGTTTT 59.564 43.478 0.00 0.00 0.00 2.43
4562 7807 3.000727 GCATAGGTCAACAGCGTAGTTT 58.999 45.455 0.00 0.00 0.00 2.66
4602 7847 4.445385 GGATGTGTTGTTTCAGAATGTTGC 59.555 41.667 0.00 0.00 37.40 4.17
4636 7881 6.808008 ACTCACATTATGAAGTCAGTTTGG 57.192 37.500 0.00 0.00 36.69 3.28
4981 8229 9.612066 TGATGCAGTTGATATATAGTGAAAACA 57.388 29.630 0.00 0.00 0.00 2.83
5008 8257 3.417069 TGGTCGGTTCTCATTCACAAT 57.583 42.857 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.