Multiple sequence alignment - TraesCS1A01G327400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G327400 chr1A 100.000 6295 0 0 1 6295 517073004 517079298 0.000000e+00 11625.0
1 TraesCS1A01G327400 chr1A 89.130 46 3 2 354 399 20957623 20957666 8.820000e-04 56.5
2 TraesCS1A01G327400 chr1D 92.702 3672 167 41 679 4316 420596609 420600213 0.000000e+00 5203.0
3 TraesCS1A01G327400 chr1D 90.648 941 71 9 4343 5280 420600212 420601138 0.000000e+00 1234.0
4 TraesCS1A01G327400 chr1D 88.866 494 31 13 5309 5798 420601136 420601609 2.530000e-163 586.0
5 TraesCS1A01G327400 chr1D 95.775 355 15 0 2 356 420594390 420594744 1.970000e-159 573.0
6 TraesCS1A01G327400 chr1D 92.877 365 20 5 5892 6255 420601612 420601971 5.590000e-145 525.0
7 TraesCS1A01G327400 chr1D 96.441 281 8 2 404 683 420594730 420595009 4.450000e-126 462.0
8 TraesCS1A01G327400 chr1D 93.607 219 10 3 1 219 178283498 178283284 2.190000e-84 324.0
9 TraesCS1A01G327400 chr1D 93.137 102 7 0 5795 5896 207810782 207810883 3.930000e-32 150.0
10 TraesCS1A01G327400 chr1B 91.329 2514 149 34 3298 5798 568745475 568747932 0.000000e+00 3371.0
11 TraesCS1A01G327400 chr1B 91.767 2235 126 30 702 2910 568743236 568745438 0.000000e+00 3055.0
12 TraesCS1A01G327400 chr1B 93.023 43 3 0 6198 6240 568748166 568748208 5.270000e-06 63.9
13 TraesCS1A01G327400 chr3D 95.694 209 9 0 2 210 285808842 285809050 2.810000e-88 337.0
14 TraesCS1A01G327400 chr3D 96.078 204 8 0 1 204 396425985 396425782 3.640000e-87 333.0
15 TraesCS1A01G327400 chr3D 96.059 203 8 0 1 203 324743634 324743836 1.310000e-86 331.0
16 TraesCS1A01G327400 chr3D 94.064 219 9 4 1 217 60089816 60089600 4.700000e-86 329.0
17 TraesCS1A01G327400 chr3D 100.000 43 0 0 359 401 496187974 496187932 5.230000e-11 80.5
18 TraesCS1A01G327400 chr2A 96.552 203 6 1 1 203 675810070 675809869 1.010000e-87 335.0
19 TraesCS1A01G327400 chr4D 95.652 207 8 1 1 207 488054393 488054188 1.310000e-86 331.0
20 TraesCS1A01G327400 chr2D 95.652 207 8 1 1 207 200844897 200845102 1.310000e-86 331.0
21 TraesCS1A01G327400 chr2D 86.614 127 13 3 5796 5920 51138709 51138833 3.060000e-28 137.0
22 TraesCS1A01G327400 chr7D 94.231 104 6 0 5795 5898 382733744 382733641 6.530000e-35 159.0
23 TraesCS1A01G327400 chr5A 94.118 102 6 0 5795 5896 422444365 422444466 8.450000e-34 156.0
24 TraesCS1A01G327400 chr5A 98.000 50 1 0 355 404 709529590 709529639 3.130000e-13 87.9
25 TraesCS1A01G327400 chr5A 92.857 42 3 0 356 397 300393269 300393228 1.890000e-05 62.1
26 TraesCS1A01G327400 chr7B 94.059 101 6 0 5795 5895 194607178 194607278 3.040000e-33 154.0
27 TraesCS1A01G327400 chr4A 93.269 104 7 0 5795 5898 244230090 244230193 3.040000e-33 154.0
28 TraesCS1A01G327400 chr4A 93.269 104 7 0 5795 5898 324519546 324519443 3.040000e-33 154.0
29 TraesCS1A01G327400 chr4A 93.750 48 3 0 364 411 597888573 597888620 8.750000e-09 73.1
30 TraesCS1A01G327400 chr3B 93.269 104 7 0 5795 5898 716149036 716148933 3.040000e-33 154.0
31 TraesCS1A01G327400 chr4B 93.204 103 7 0 5795 5897 446519435 446519537 1.090000e-32 152.0
32 TraesCS1A01G327400 chr3A 95.238 42 2 0 357 398 1744945 1744986 4.070000e-07 67.6
33 TraesCS1A01G327400 chrUn 79.167 96 18 2 6111 6205 22443014 22442920 1.460000e-06 65.8
34 TraesCS1A01G327400 chr5B 97.222 36 1 0 357 392 594906298 594906333 1.890000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G327400 chr1A 517073004 517079298 6294 False 11625.0 11625 100.000000 1 6295 1 chr1A.!!$F2 6294
1 TraesCS1A01G327400 chr1D 420594390 420601971 7581 False 1430.5 5203 92.884833 2 6255 6 chr1D.!!$F2 6253
2 TraesCS1A01G327400 chr1B 568743236 568748208 4972 False 2163.3 3371 92.039667 702 6240 3 chr1B.!!$F1 5538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 2509 0.108585 TTGTTCCTTCCTTGCTCGCT 59.891 50.0 0.00 0.00 0.00 4.93 F
2037 3661 0.031585 CCGCCATGGCAATGATGAAG 59.968 55.0 34.93 15.75 42.06 3.02 F
2090 3714 0.394762 ACGCATGGCAATGATGGAGT 60.395 50.0 4.87 0.00 35.67 3.85 F
2470 4097 0.615331 ATGAGGTGTCGGATGCACTT 59.385 50.0 0.00 0.00 37.07 3.16 F
2756 4401 1.308998 GGTCCAGTTGATTATGGGCG 58.691 55.0 0.00 0.00 42.33 6.13 F
4631 6292 0.389025 CCGCCAAAGCTTCCAAACTT 59.611 50.0 0.00 0.00 36.60 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 3700 0.107703 GTCGGACTCCATCATTGCCA 60.108 55.000 0.00 0.00 0.00 4.92 R
3413 5067 2.526450 CTTGATGCAGAGGCCGGTGA 62.526 60.000 11.28 0.00 40.13 4.02 R
3981 5638 4.317839 CGTTTGAAGGCGAAAGGTATATCG 60.318 45.833 0.00 0.00 41.81 2.92 R
4110 5767 0.168788 AGTGCGGCGATTCACAATTG 59.831 50.000 12.98 3.24 35.76 2.32 R
4646 6307 0.109272 CGCCTTTGACGTCTGCTAGA 60.109 55.000 17.92 0.00 0.00 2.43 R
5646 7311 0.034186 ATGATGGTTGTGGCATCGGT 60.034 50.000 0.00 0.00 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 2.544721 TGAAGATGCACTCCCTCTCTT 58.455 47.619 0.00 0.00 0.00 2.85
134 135 2.244695 TGCACTCCCTCTCTTTCGTTA 58.755 47.619 0.00 0.00 0.00 3.18
139 140 4.701171 CACTCCCTCTCTTTCGTTACTAGT 59.299 45.833 0.00 0.00 0.00 2.57
177 178 8.479689 TGATCTTGGTGATACGTAGGAAAATTA 58.520 33.333 0.08 0.00 35.14 1.40
220 221 5.588648 CCCAACACTTACTTATACCATGTGG 59.411 44.000 0.00 0.00 42.17 4.17
241 242 2.262471 ATCTCCGTTTCCGTCGGTCG 62.262 60.000 11.88 13.95 46.86 4.79
264 265 1.135689 CGCCAGTCACCTTTATGTTGC 60.136 52.381 0.00 0.00 0.00 4.17
285 286 7.335924 TGTTGCTGAGAACCACTAATTTATACC 59.664 37.037 0.00 0.00 0.00 2.73
294 295 5.581874 ACCACTAATTTATACCCGACAAACG 59.418 40.000 0.00 0.00 42.18 3.60
341 342 0.963962 AAGGTTCTCGGCTTACGTCA 59.036 50.000 0.00 0.00 44.69 4.35
342 343 0.243095 AGGTTCTCGGCTTACGTCAC 59.757 55.000 0.00 0.00 44.69 3.67
343 344 0.243095 GGTTCTCGGCTTACGTCACT 59.757 55.000 0.00 0.00 44.69 3.41
344 345 1.336609 GGTTCTCGGCTTACGTCACTT 60.337 52.381 0.00 0.00 44.69 3.16
345 346 2.401351 GTTCTCGGCTTACGTCACTTT 58.599 47.619 0.00 0.00 44.69 2.66
346 347 2.060326 TCTCGGCTTACGTCACTTTG 57.940 50.000 0.00 0.00 44.69 2.77
347 348 0.438830 CTCGGCTTACGTCACTTTGC 59.561 55.000 0.00 0.00 44.69 3.68
348 349 0.947180 TCGGCTTACGTCACTTTGCC 60.947 55.000 0.00 0.00 44.69 4.52
349 350 0.949105 CGGCTTACGTCACTTTGCCT 60.949 55.000 0.00 0.00 38.33 4.75
350 351 1.670674 CGGCTTACGTCACTTTGCCTA 60.671 52.381 0.00 0.00 38.33 3.93
351 352 1.730612 GGCTTACGTCACTTTGCCTAC 59.269 52.381 0.00 0.00 37.58 3.18
352 353 2.409975 GCTTACGTCACTTTGCCTACA 58.590 47.619 0.00 0.00 0.00 2.74
353 354 3.000727 GCTTACGTCACTTTGCCTACAT 58.999 45.455 0.00 0.00 0.00 2.29
354 355 3.181520 GCTTACGTCACTTTGCCTACATG 60.182 47.826 0.00 0.00 0.00 3.21
355 356 1.808411 ACGTCACTTTGCCTACATGG 58.192 50.000 0.00 0.00 39.35 3.66
356 357 1.346395 ACGTCACTTTGCCTACATGGA 59.654 47.619 0.00 0.00 38.35 3.41
357 358 1.732259 CGTCACTTTGCCTACATGGAC 59.268 52.381 0.00 0.00 38.35 4.02
358 359 2.084546 GTCACTTTGCCTACATGGACC 58.915 52.381 0.00 0.00 38.35 4.46
359 360 1.702401 TCACTTTGCCTACATGGACCA 59.298 47.619 0.00 0.00 38.35 4.02
360 361 2.308570 TCACTTTGCCTACATGGACCAT 59.691 45.455 0.00 0.00 38.35 3.55
361 362 2.424601 CACTTTGCCTACATGGACCATG 59.575 50.000 29.36 29.36 46.18 3.66
372 373 4.823790 CATGGACCATGTGACATATGTG 57.176 45.455 24.15 0.00 37.12 3.21
373 374 3.280197 TGGACCATGTGACATATGTGG 57.720 47.619 14.43 10.37 36.06 4.17
374 375 2.575735 TGGACCATGTGACATATGTGGT 59.424 45.455 14.43 13.74 45.32 4.16
375 376 3.777522 TGGACCATGTGACATATGTGGTA 59.222 43.478 14.43 0.00 42.87 3.25
376 377 4.226168 TGGACCATGTGACATATGTGGTAA 59.774 41.667 14.43 3.48 42.87 2.85
377 378 4.816385 GGACCATGTGACATATGTGGTAAG 59.184 45.833 14.43 0.25 42.87 2.34
378 379 4.199310 ACCATGTGACATATGTGGTAAGC 58.801 43.478 14.43 0.00 41.15 3.09
379 380 4.198530 CCATGTGACATATGTGGTAAGCA 58.801 43.478 14.43 0.37 0.00 3.91
380 381 4.639755 CCATGTGACATATGTGGTAAGCAA 59.360 41.667 14.43 0.00 0.00 3.91
381 382 5.300034 CCATGTGACATATGTGGTAAGCAAT 59.700 40.000 14.43 0.00 0.00 3.56
382 383 6.183360 CCATGTGACATATGTGGTAAGCAATT 60.183 38.462 14.43 0.00 0.00 2.32
383 384 6.832520 TGTGACATATGTGGTAAGCAATTT 57.167 33.333 14.43 0.00 0.00 1.82
384 385 7.929941 TGTGACATATGTGGTAAGCAATTTA 57.070 32.000 14.43 0.00 0.00 1.40
385 386 8.341892 TGTGACATATGTGGTAAGCAATTTAA 57.658 30.769 14.43 0.00 0.00 1.52
386 387 8.797438 TGTGACATATGTGGTAAGCAATTTAAA 58.203 29.630 14.43 0.00 0.00 1.52
387 388 9.072294 GTGACATATGTGGTAAGCAATTTAAAC 57.928 33.333 14.43 0.00 0.00 2.01
388 389 8.247562 TGACATATGTGGTAAGCAATTTAAACC 58.752 33.333 14.43 0.00 0.00 3.27
389 390 8.128322 ACATATGTGGTAAGCAATTTAAACCA 57.872 30.769 7.78 0.00 37.88 3.67
390 391 8.589338 ACATATGTGGTAAGCAATTTAAACCAA 58.411 29.630 7.78 0.00 41.65 3.67
391 392 9.598517 CATATGTGGTAAGCAATTTAAACCAAT 57.401 29.630 0.00 0.00 41.65 3.16
393 394 7.954788 TGTGGTAAGCAATTTAAACCAATTC 57.045 32.000 0.00 0.00 41.65 2.17
394 395 7.500992 TGTGGTAAGCAATTTAAACCAATTCA 58.499 30.769 0.00 0.00 41.65 2.57
395 396 7.987458 TGTGGTAAGCAATTTAAACCAATTCAA 59.013 29.630 0.00 0.00 41.65 2.69
396 397 8.831550 GTGGTAAGCAATTTAAACCAATTCAAA 58.168 29.630 0.00 0.00 41.65 2.69
397 398 9.396022 TGGTAAGCAATTTAAACCAATTCAAAA 57.604 25.926 0.00 0.00 37.29 2.44
542 544 8.508883 ACTGTAGTGGAGTACTATTTACTCAG 57.491 38.462 12.33 9.64 43.44 3.35
544 546 8.503458 TGTAGTGGAGTACTATTTACTCAGTC 57.497 38.462 12.33 3.76 43.44 3.51
546 548 5.589452 AGTGGAGTACTATTTACTCAGTCCG 59.411 44.000 12.33 0.00 44.18 4.79
719 2324 3.694734 AGAATGAGTGTTTTTGCGTGTG 58.305 40.909 0.00 0.00 0.00 3.82
720 2325 3.128589 AGAATGAGTGTTTTTGCGTGTGT 59.871 39.130 0.00 0.00 0.00 3.72
721 2326 2.254918 TGAGTGTTTTTGCGTGTGTG 57.745 45.000 0.00 0.00 0.00 3.82
762 2373 6.634805 TGTATTGTGTTGAAAAGAAAGGCAA 58.365 32.000 0.00 0.00 0.00 4.52
807 2426 7.002250 TCAATCCCAAATTTGTTCTTGCATA 57.998 32.000 16.73 0.23 0.00 3.14
880 2499 2.030805 CGCTCCTTTTGTTCCTTCCTTG 60.031 50.000 0.00 0.00 0.00 3.61
886 2509 0.108585 TTGTTCCTTCCTTGCTCGCT 59.891 50.000 0.00 0.00 0.00 4.93
924 2547 0.900647 ACTCTTCACCACCTCTCCCG 60.901 60.000 0.00 0.00 0.00 5.14
952 2576 0.955919 CCACAAACGAAGCTCCTCCC 60.956 60.000 0.00 0.00 0.00 4.30
1005 2629 2.746375 CCCCTACTCGCCAATGCCT 61.746 63.158 0.00 0.00 0.00 4.75
1007 2631 1.227674 CCTACTCGCCAATGCCTCC 60.228 63.158 0.00 0.00 0.00 4.30
1029 2653 2.046507 CTGGCACTGCTCCTCACC 60.047 66.667 0.00 0.00 0.00 4.02
1038 2662 2.122729 CTCCTCACCCTCACCCCA 59.877 66.667 0.00 0.00 0.00 4.96
1470 3094 4.812476 TCATCGGAGCCCAACGCG 62.812 66.667 3.53 3.53 44.76 6.01
1566 3190 3.360340 GTCGACACCGTCCCGAGT 61.360 66.667 11.55 0.00 37.05 4.18
2000 3624 1.145819 GAGCAGAGGATCCCAGCAC 59.854 63.158 19.21 11.50 33.66 4.40
2037 3661 0.031585 CCGCCATGGCAATGATGAAG 59.968 55.000 34.93 15.75 42.06 3.02
2042 3666 3.369681 GCCATGGCAATGATGAAGGAAAA 60.370 43.478 32.08 0.00 41.49 2.29
2053 3677 1.345089 TGAAGGAAAATGACGACGGGA 59.655 47.619 0.00 0.00 0.00 5.14
2060 3684 2.842394 AATGACGACGGGAGCAGCAG 62.842 60.000 0.00 0.00 0.00 4.24
2090 3714 0.394762 ACGCATGGCAATGATGGAGT 60.395 50.000 4.87 0.00 35.67 3.85
2127 3751 3.373565 CTGCACCGGGAAAAGGGC 61.374 66.667 6.32 0.00 0.00 5.19
2309 3936 1.852633 TGAGGACATGATCGAGGTGT 58.147 50.000 0.00 0.00 0.00 4.16
2339 3966 2.125512 GTGTGGCAGCTAGGGACG 60.126 66.667 0.00 0.00 0.00 4.79
2340 3967 2.603473 TGTGGCAGCTAGGGACGT 60.603 61.111 0.00 0.00 0.00 4.34
2470 4097 0.615331 ATGAGGTGTCGGATGCACTT 59.385 50.000 0.00 0.00 37.07 3.16
2476 4103 2.095919 GGTGTCGGATGCACTTTTACAC 60.096 50.000 10.92 10.92 37.07 2.90
2506 4148 4.701956 ACTATTTGCTTGAAATGGGTCG 57.298 40.909 0.00 0.00 36.95 4.79
2565 4207 5.012458 TGCATGGGATTTTTGGTTTATGTCA 59.988 36.000 0.00 0.00 0.00 3.58
2681 4323 3.380320 AGAAGCTGCACGGTTTTTAAGTT 59.620 39.130 1.02 0.00 32.54 2.66
2691 4336 7.041984 TGCACGGTTTTTAAGTTGAAAAAGTTT 60.042 29.630 7.09 0.00 38.59 2.66
2714 4359 8.547069 GTTTCACAAATGCTTTACTTTTGCATA 58.453 29.630 0.00 0.00 45.29 3.14
2723 4368 6.867816 TGCTTTACTTTTGCATATTGTCTTGG 59.132 34.615 0.00 0.00 0.00 3.61
2754 4399 2.242196 AGGTGGTCCAGTTGATTATGGG 59.758 50.000 0.00 0.00 37.19 4.00
2756 4401 1.308998 GGTCCAGTTGATTATGGGCG 58.691 55.000 0.00 0.00 42.33 6.13
2761 4407 2.364632 CAGTTGATTATGGGCGGTTCA 58.635 47.619 0.00 0.00 0.00 3.18
2791 4437 4.327357 GTGATCTCATGGTCTTGTGTTACG 59.673 45.833 0.00 0.00 0.00 3.18
2846 4497 7.633193 TTTATACGGAAATATTTGTGCCTGT 57.367 32.000 5.17 5.01 0.00 4.00
2850 4501 5.606505 ACGGAAATATTTGTGCCTGTTTTT 58.393 33.333 5.17 0.00 0.00 1.94
2851 4502 5.465056 ACGGAAATATTTGTGCCTGTTTTTG 59.535 36.000 5.17 0.00 0.00 2.44
2861 4512 7.753309 TTGTGCCTGTTTTTGTATATAGTGT 57.247 32.000 0.00 0.00 0.00 3.55
2862 4513 8.850007 TTGTGCCTGTTTTTGTATATAGTGTA 57.150 30.769 0.00 0.00 0.00 2.90
2865 4516 8.889717 GTGCCTGTTTTTGTATATAGTGTACAT 58.110 33.333 0.00 0.00 32.56 2.29
2866 4517 9.456147 TGCCTGTTTTTGTATATAGTGTACATT 57.544 29.630 0.00 0.00 32.56 2.71
2891 4542 9.832445 TTTAGAACTTCTAAGAACAGAACATGT 57.168 29.630 10.48 0.00 40.95 3.21
3035 4689 9.736023 AACTTTGACAAGTATTTTCTCACATTC 57.264 29.630 0.00 0.00 42.89 2.67
3155 4809 9.679661 ACCTATGACTGTATATCATCTACTCAG 57.320 37.037 0.00 0.00 37.89 3.35
3156 4810 9.679661 CCTATGACTGTATATCATCTACTCAGT 57.320 37.037 0.00 0.00 37.89 3.41
3160 4814 9.408648 TGACTGTATATCATCTACTCAGTTTCA 57.591 33.333 0.00 0.00 35.32 2.69
3179 4833 8.084073 CAGTTTCATTTGTCACCTACATTTCAT 58.916 33.333 0.00 0.00 38.10 2.57
3186 4840 7.667043 TTGTCACCTACATTTCATTGTCTAC 57.333 36.000 0.00 0.00 38.10 2.59
3187 4841 7.004555 TGTCACCTACATTTCATTGTCTACT 57.995 36.000 0.00 0.00 31.43 2.57
3190 4844 8.784043 GTCACCTACATTTCATTGTCTACTTTT 58.216 33.333 0.00 0.00 0.00 2.27
3268 4922 7.004555 TCTTTCTTTAGATGTACTCAAGCCA 57.995 36.000 0.00 0.00 31.93 4.75
3272 4926 7.476540 TCTTTAGATGTACTCAAGCCAAGTA 57.523 36.000 0.00 0.00 31.93 2.24
3273 4927 7.903145 TCTTTAGATGTACTCAAGCCAAGTAA 58.097 34.615 0.00 0.00 31.93 2.24
3274 4928 8.372459 TCTTTAGATGTACTCAAGCCAAGTAAA 58.628 33.333 0.00 0.00 31.93 2.01
3275 4929 8.547967 TTTAGATGTACTCAAGCCAAGTAAAG 57.452 34.615 0.00 0.00 31.32 1.85
3276 4930 5.491982 AGATGTACTCAAGCCAAGTAAAGG 58.508 41.667 0.00 0.00 31.32 3.11
3291 4945 4.736473 AGTAAAGGTGGCTGTAAATTGGT 58.264 39.130 0.00 0.00 0.00 3.67
3430 5084 1.913951 AATCACCGGCCTCTGCATCA 61.914 55.000 0.00 0.00 40.13 3.07
3468 5122 4.575236 TGTTGTATTAACGTGAAAGTGCCA 59.425 37.500 0.00 0.00 0.00 4.92
3527 5181 4.467795 TCAATGGTGAGGGTTCAAAACAAA 59.532 37.500 0.00 0.00 34.49 2.83
3737 5393 8.534496 CATTCCACTCCCTTTCAATAAGAATTT 58.466 33.333 0.00 0.00 35.83 1.82
3738 5394 9.768215 ATTCCACTCCCTTTCAATAAGAATTTA 57.232 29.630 0.00 0.00 35.83 1.40
4110 5767 9.444600 TTCCAGTTCATTTTGTACTAGTATTCC 57.555 33.333 5.75 0.00 0.00 3.01
4158 5815 6.748333 TTCATATTGTCTTTCTGCCTGAAG 57.252 37.500 0.00 0.00 35.89 3.02
4168 5825 3.370840 TCTGCCTGAAGCCAATATGTT 57.629 42.857 0.00 0.00 42.71 2.71
4224 5881 1.357137 TCCACAGTGTCCATGGCTTA 58.643 50.000 6.96 0.00 33.20 3.09
4225 5882 1.003118 TCCACAGTGTCCATGGCTTAC 59.997 52.381 6.96 5.81 33.20 2.34
4234 5891 1.344438 TCCATGGCTTACATCCGCTAG 59.656 52.381 6.96 0.00 37.84 3.42
4268 5926 1.878088 CAATCTGATCATCCTTGCCCG 59.122 52.381 0.00 0.00 0.00 6.13
4344 6002 7.865706 AGGATACACAAAATATGGTTGAGAC 57.134 36.000 6.44 0.00 41.41 3.36
4359 6017 1.142870 TGAGACCACCCTTGACCTTTG 59.857 52.381 0.00 0.00 0.00 2.77
4372 6030 2.225091 TGACCTTTGCACCCATCTTGAT 60.225 45.455 0.00 0.00 0.00 2.57
4373 6031 2.827921 GACCTTTGCACCCATCTTGATT 59.172 45.455 0.00 0.00 0.00 2.57
4408 6066 7.399765 TCCAATGGTCCATGACAAGATTATTTT 59.600 33.333 4.74 0.00 33.68 1.82
4410 6068 8.875803 CAATGGTCCATGACAAGATTATTTTTG 58.124 33.333 4.74 0.00 33.68 2.44
4411 6069 6.934056 TGGTCCATGACAAGATTATTTTTGG 58.066 36.000 0.00 0.00 33.68 3.28
4436 6097 5.389859 TGGAGATTACCATTTTTGCAGTG 57.610 39.130 0.00 0.00 34.77 3.66
4443 6104 8.752187 AGATTACCATTTTTGCAGTGTCATATT 58.248 29.630 0.00 0.00 0.00 1.28
4444 6105 8.931385 ATTACCATTTTTGCAGTGTCATATTC 57.069 30.769 0.00 0.00 0.00 1.75
4445 6106 6.343716 ACCATTTTTGCAGTGTCATATTCA 57.656 33.333 0.00 0.00 0.00 2.57
4446 6107 6.938507 ACCATTTTTGCAGTGTCATATTCAT 58.061 32.000 0.00 0.00 0.00 2.57
4447 6108 8.065473 ACCATTTTTGCAGTGTCATATTCATA 57.935 30.769 0.00 0.00 0.00 2.15
4456 6117 8.306761 TGCAGTGTCATATTCATATACTACCAG 58.693 37.037 0.00 0.00 0.00 4.00
4463 6124 3.630625 TCATATACTACCAGGGCCTGT 57.369 47.619 30.68 20.70 0.00 4.00
4468 6129 1.213296 ACTACCAGGGCCTGTAATGG 58.787 55.000 30.68 19.18 38.83 3.16
4502 6163 9.739276 TTTAGTGACTGACTATTCATCCATTTT 57.261 29.630 0.00 0.00 37.01 1.82
4503 6164 7.856145 AGTGACTGACTATTCATCCATTTTC 57.144 36.000 0.00 0.00 30.86 2.29
4523 6184 1.467734 CTTCAGGCAGCTTGTGATGAC 59.532 52.381 4.15 0.00 38.01 3.06
4602 6263 5.460646 ACCAAATGAATGTCGACACAAATC 58.539 37.500 22.71 16.54 35.64 2.17
4605 6266 1.463056 TGAATGTCGACACAAATCGGC 59.537 47.619 22.71 4.78 46.86 5.54
4611 6272 2.048597 ACACAAATCGGCGCGAGA 60.049 55.556 12.10 9.09 39.91 4.04
4612 6273 2.279937 GACACAAATCGGCGCGAGAC 62.280 60.000 12.10 0.00 39.91 3.36
4613 6274 2.813908 ACAAATCGGCGCGAGACC 60.814 61.111 12.10 0.00 39.91 3.85
4614 6275 3.913573 CAAATCGGCGCGAGACCG 61.914 66.667 12.10 14.67 46.94 4.79
4631 6292 0.389025 CCGCCAAAGCTTCCAAACTT 59.611 50.000 0.00 0.00 36.60 2.66
4646 6307 4.105697 TCCAAACTTGACACCCTCCTTAAT 59.894 41.667 0.00 0.00 0.00 1.40
4670 6331 3.774702 GACGTCAAAGGCGCCGAC 61.775 66.667 23.20 20.99 0.00 4.79
4713 6374 2.976840 GCCGTGCAAGAAATCGCCA 61.977 57.895 0.00 0.00 0.00 5.69
4743 6404 6.371548 AGAAGACGAAAAATCCGATGAAATCA 59.628 34.615 0.00 0.00 45.97 2.57
4750 6411 7.007725 CGAAAAATCCGATGAAATCACAGAAAG 59.992 37.037 0.00 0.00 45.97 2.62
4751 6412 6.824305 AAATCCGATGAAATCACAGAAAGT 57.176 33.333 0.00 0.00 45.97 2.66
4790 6451 1.480212 ATGGCCTGAAGGTCGTGTCA 61.480 55.000 3.32 0.00 44.44 3.58
4874 6535 2.305635 TGGCTATGTCTCCAAGCTTGAA 59.694 45.455 28.05 6.62 36.48 2.69
4883 6544 1.082104 CAAGCTTGAAACCGGCGTC 60.082 57.895 22.31 0.00 0.00 5.19
4895 6556 3.340727 CGGCGTCGGAAAGATAACT 57.659 52.632 0.00 0.00 0.00 2.24
4944 6605 1.427753 GGAAGGGGGAGAGGTTTTTCA 59.572 52.381 0.00 0.00 0.00 2.69
4986 6647 1.227497 GAAGCTGAGCAGGGGATCG 60.227 63.158 7.39 0.00 30.14 3.69
4994 6655 2.903357 CAGGGGATCGGACAGGTG 59.097 66.667 0.00 0.00 0.00 4.00
5168 6829 4.016706 CAGGACCGGGCGTTCCTT 62.017 66.667 8.59 0.00 0.00 3.36
5237 6898 1.757731 GGGTATGCATGGCCAGCAA 60.758 57.895 26.51 16.25 46.27 3.91
5246 6907 1.919600 ATGGCCAGCAAGGAGGAGAC 61.920 60.000 13.05 0.00 41.22 3.36
5283 6944 2.898920 TACGCTCCTCGGTGTAGGGG 62.899 65.000 0.00 0.00 43.86 4.79
5284 6945 3.155167 GCTCCTCGGTGTAGGGGG 61.155 72.222 0.00 0.00 37.62 5.40
5308 6969 1.067071 GGACTAGGAAGGAACCACACG 60.067 57.143 0.00 0.00 0.00 4.49
5309 6970 1.617357 GACTAGGAAGGAACCACACGT 59.383 52.381 0.00 0.00 0.00 4.49
5310 6971 2.821969 GACTAGGAAGGAACCACACGTA 59.178 50.000 0.00 0.00 0.00 3.57
5311 6972 2.560105 ACTAGGAAGGAACCACACGTAC 59.440 50.000 0.00 0.00 0.00 3.67
5312 6973 1.713297 AGGAAGGAACCACACGTACT 58.287 50.000 0.00 0.00 0.00 2.73
5313 6974 1.343465 AGGAAGGAACCACACGTACTG 59.657 52.381 0.00 0.00 0.00 2.74
5314 6975 1.145803 GAAGGAACCACACGTACTGC 58.854 55.000 0.00 0.00 0.00 4.40
5358 7019 2.096013 TGTCGATCGCACTAGTCTTCAG 59.904 50.000 11.09 0.00 0.00 3.02
5363 7024 4.212425 CGATCGCACTAGTCTTCAGTAGAT 59.788 45.833 0.26 0.00 34.79 1.98
5366 7027 3.243234 CGCACTAGTCTTCAGTAGATGGG 60.243 52.174 0.00 0.00 34.79 4.00
5367 7028 3.702045 GCACTAGTCTTCAGTAGATGGGT 59.298 47.826 0.00 0.00 34.79 4.51
5490 7151 9.058174 TCGTTGGAAATCTTCTGTACAAAATAA 57.942 29.630 0.00 0.00 0.00 1.40
5539 7204 2.024414 ACACTGGCAGTTTTTCAGTCC 58.976 47.619 19.43 0.00 39.43 3.85
5590 7255 7.775093 TGCTTACTTATATTTCAGCCTTGTGAT 59.225 33.333 0.00 0.00 0.00 3.06
5636 7301 0.696501 GAGGAGGTTAAACCCTGGCA 59.303 55.000 5.38 0.00 39.75 4.92
5646 7311 3.737559 AAACCCTGGCATCTGTATCAA 57.262 42.857 0.00 0.00 0.00 2.57
5709 7376 4.794278 TTCGAGTAGTTACATGAAGGCA 57.206 40.909 0.00 0.00 0.00 4.75
5747 7414 1.092348 GTCGGTCAATAAACTGGCCC 58.908 55.000 0.00 0.00 37.86 5.80
5791 7463 7.812669 TCATACACATATTCTATTACACTGCCG 59.187 37.037 0.00 0.00 0.00 5.69
5798 7470 4.274602 TCTATTACACTGCCGTCCAAAA 57.725 40.909 0.00 0.00 0.00 2.44
5799 7471 4.839121 TCTATTACACTGCCGTCCAAAAT 58.161 39.130 0.00 0.00 0.00 1.82
5800 7472 3.848272 ATTACACTGCCGTCCAAAATG 57.152 42.857 0.00 0.00 0.00 2.32
5801 7473 2.552599 TACACTGCCGTCCAAAATGA 57.447 45.000 0.00 0.00 0.00 2.57
5802 7474 1.686355 ACACTGCCGTCCAAAATGAA 58.314 45.000 0.00 0.00 0.00 2.57
5803 7475 2.238521 ACACTGCCGTCCAAAATGAAT 58.761 42.857 0.00 0.00 0.00 2.57
5804 7476 2.030007 ACACTGCCGTCCAAAATGAATG 60.030 45.455 0.00 0.00 0.00 2.67
5805 7477 2.228582 CACTGCCGTCCAAAATGAATGA 59.771 45.455 0.00 0.00 0.00 2.57
5806 7478 2.890311 ACTGCCGTCCAAAATGAATGAA 59.110 40.909 0.00 0.00 0.00 2.57
5807 7479 3.244976 CTGCCGTCCAAAATGAATGAAC 58.755 45.455 0.00 0.00 0.00 3.18
5808 7480 2.029470 TGCCGTCCAAAATGAATGAACC 60.029 45.455 0.00 0.00 0.00 3.62
5809 7481 2.231235 GCCGTCCAAAATGAATGAACCT 59.769 45.455 0.00 0.00 0.00 3.50
5810 7482 3.442273 GCCGTCCAAAATGAATGAACCTA 59.558 43.478 0.00 0.00 0.00 3.08
5811 7483 4.097892 GCCGTCCAAAATGAATGAACCTAT 59.902 41.667 0.00 0.00 0.00 2.57
5812 7484 5.298276 GCCGTCCAAAATGAATGAACCTATA 59.702 40.000 0.00 0.00 0.00 1.31
5813 7485 6.725246 CCGTCCAAAATGAATGAACCTATAC 58.275 40.000 0.00 0.00 0.00 1.47
5814 7486 6.238648 CCGTCCAAAATGAATGAACCTATACC 60.239 42.308 0.00 0.00 0.00 2.73
5815 7487 6.238648 CGTCCAAAATGAATGAACCTATACCC 60.239 42.308 0.00 0.00 0.00 3.69
5816 7488 6.833933 GTCCAAAATGAATGAACCTATACCCT 59.166 38.462 0.00 0.00 0.00 4.34
5817 7489 7.996644 GTCCAAAATGAATGAACCTATACCCTA 59.003 37.037 0.00 0.00 0.00 3.53
5818 7490 8.561769 TCCAAAATGAATGAACCTATACCCTAA 58.438 33.333 0.00 0.00 0.00 2.69
5819 7491 9.196139 CCAAAATGAATGAACCTATACCCTAAA 57.804 33.333 0.00 0.00 0.00 1.85
5821 7493 9.990868 AAAATGAATGAACCTATACCCTAAACT 57.009 29.630 0.00 0.00 0.00 2.66
5824 7496 7.719483 TGAATGAACCTATACCCTAAACTACG 58.281 38.462 0.00 0.00 0.00 3.51
5825 7497 7.342799 TGAATGAACCTATACCCTAAACTACGT 59.657 37.037 0.00 0.00 0.00 3.57
5826 7498 6.699575 TGAACCTATACCCTAAACTACGTC 57.300 41.667 0.00 0.00 0.00 4.34
5827 7499 6.426587 TGAACCTATACCCTAAACTACGTCT 58.573 40.000 0.00 0.00 0.00 4.18
5828 7500 7.573710 TGAACCTATACCCTAAACTACGTCTA 58.426 38.462 0.00 0.00 0.00 2.59
5829 7501 8.220559 TGAACCTATACCCTAAACTACGTCTAT 58.779 37.037 0.00 0.00 0.00 1.98
5830 7502 9.726438 GAACCTATACCCTAAACTACGTCTATA 57.274 37.037 0.00 0.00 0.00 1.31
5837 7509 8.572855 ACCCTAAACTACGTCTATATACATCC 57.427 38.462 0.00 0.00 0.00 3.51
5838 7510 7.335422 ACCCTAAACTACGTCTATATACATCCG 59.665 40.741 0.00 0.00 0.00 4.18
5839 7511 7.550551 CCCTAAACTACGTCTATATACATCCGA 59.449 40.741 0.00 0.00 0.00 4.55
5840 7512 8.939929 CCTAAACTACGTCTATATACATCCGAA 58.060 37.037 0.00 0.00 0.00 4.30
5854 7526 5.201713 ACATCCGAATGTAGTCCATAGTG 57.798 43.478 0.00 0.00 44.38 2.74
5855 7527 4.893524 ACATCCGAATGTAGTCCATAGTGA 59.106 41.667 0.00 0.00 44.38 3.41
5856 7528 5.362717 ACATCCGAATGTAGTCCATAGTGAA 59.637 40.000 0.00 0.00 44.38 3.18
5857 7529 5.925506 TCCGAATGTAGTCCATAGTGAAA 57.074 39.130 0.00 0.00 31.97 2.69
5858 7530 6.479972 TCCGAATGTAGTCCATAGTGAAAT 57.520 37.500 0.00 0.00 31.97 2.17
5859 7531 6.513180 TCCGAATGTAGTCCATAGTGAAATC 58.487 40.000 0.00 0.00 31.97 2.17
5860 7532 6.323996 TCCGAATGTAGTCCATAGTGAAATCT 59.676 38.462 0.00 0.00 31.97 2.40
5861 7533 6.642950 CCGAATGTAGTCCATAGTGAAATCTC 59.357 42.308 0.00 0.00 31.97 2.75
5862 7534 7.429633 CGAATGTAGTCCATAGTGAAATCTCT 58.570 38.462 0.00 0.00 31.97 3.10
5863 7535 8.568794 CGAATGTAGTCCATAGTGAAATCTCTA 58.431 37.037 0.00 0.00 31.97 2.43
5890 7562 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5900 7572 2.108970 GGAACGGAGGGAGTAGAACAT 58.891 52.381 0.00 0.00 0.00 2.71
5914 7586 7.067494 GGGAGTAGAACATATTGCATGTTTCTT 59.933 37.037 5.68 0.00 41.76 2.52
6031 7712 3.126001 ACTAGCAGCACACTTAAAGCA 57.874 42.857 0.00 0.00 0.00 3.91
6044 7725 5.298527 ACACTTAAAGCAAACTGAGGGTAAC 59.701 40.000 0.00 0.00 0.00 2.50
6077 7758 4.583073 ACAAAAGCGAACTGAGGGTAATTT 59.417 37.500 0.00 0.00 0.00 1.82
6090 7771 5.163343 TGAGGGTAATTTAGATGAGGTTCCG 60.163 44.000 0.00 0.00 0.00 4.30
6131 7812 5.011738 CACCAGGGTTCAAGTTCTAGACTTA 59.988 44.000 0.00 0.00 46.75 2.24
6141 7822 8.718102 TCAAGTTCTAGACTTAATATTGGTGC 57.282 34.615 0.00 0.00 46.75 5.01
6147 7828 9.542462 TTCTAGACTTAATATTGGTGCACATAC 57.458 33.333 20.43 1.36 0.00 2.39
6187 7869 2.936316 TCGTCGACGATGTTCATTCAA 58.064 42.857 34.97 10.04 44.22 2.69
6251 7933 7.387119 TGACTTCATCAATCAGAGGATTTTG 57.613 36.000 0.00 0.00 41.78 2.44
6252 7934 6.944290 TGACTTCATCAATCAGAGGATTTTGT 59.056 34.615 0.00 0.00 41.78 2.83
6253 7935 7.094506 TGACTTCATCAATCAGAGGATTTTGTG 60.095 37.037 0.00 0.00 41.78 3.33
6254 7936 6.718454 ACTTCATCAATCAGAGGATTTTGTGT 59.282 34.615 0.00 0.00 41.78 3.72
6255 7937 6.505044 TCATCAATCAGAGGATTTTGTGTG 57.495 37.500 0.00 0.00 41.78 3.82
6256 7938 6.240145 TCATCAATCAGAGGATTTTGTGTGA 58.760 36.000 0.00 0.00 41.78 3.58
6257 7939 6.373495 TCATCAATCAGAGGATTTTGTGTGAG 59.627 38.462 0.00 0.00 41.78 3.51
6258 7940 5.624159 TCAATCAGAGGATTTTGTGTGAGT 58.376 37.500 0.00 0.00 41.78 3.41
6259 7941 5.471116 TCAATCAGAGGATTTTGTGTGAGTG 59.529 40.000 0.00 0.00 41.78 3.51
6260 7942 4.422073 TCAGAGGATTTTGTGTGAGTGT 57.578 40.909 0.00 0.00 0.00 3.55
6261 7943 5.545063 TCAGAGGATTTTGTGTGAGTGTA 57.455 39.130 0.00 0.00 0.00 2.90
6262 7944 6.114187 TCAGAGGATTTTGTGTGAGTGTAT 57.886 37.500 0.00 0.00 0.00 2.29
6263 7945 5.934043 TCAGAGGATTTTGTGTGAGTGTATG 59.066 40.000 0.00 0.00 0.00 2.39
6264 7946 5.702670 CAGAGGATTTTGTGTGAGTGTATGT 59.297 40.000 0.00 0.00 0.00 2.29
6265 7947 5.702670 AGAGGATTTTGTGTGAGTGTATGTG 59.297 40.000 0.00 0.00 0.00 3.21
6266 7948 4.216257 AGGATTTTGTGTGAGTGTATGTGC 59.784 41.667 0.00 0.00 0.00 4.57
6267 7949 3.600717 TTTTGTGTGAGTGTATGTGCG 57.399 42.857 0.00 0.00 0.00 5.34
6268 7950 2.232756 TTGTGTGAGTGTATGTGCGT 57.767 45.000 0.00 0.00 0.00 5.24
6269 7951 1.496934 TGTGTGAGTGTATGTGCGTG 58.503 50.000 0.00 0.00 0.00 5.34
6270 7952 1.202475 TGTGTGAGTGTATGTGCGTGT 60.202 47.619 0.00 0.00 0.00 4.49
6271 7953 2.034812 TGTGTGAGTGTATGTGCGTGTA 59.965 45.455 0.00 0.00 0.00 2.90
6272 7954 3.250744 GTGTGAGTGTATGTGCGTGTAT 58.749 45.455 0.00 0.00 0.00 2.29
6273 7955 3.060761 GTGTGAGTGTATGTGCGTGTATG 59.939 47.826 0.00 0.00 0.00 2.39
6274 7956 3.250744 GTGAGTGTATGTGCGTGTATGT 58.749 45.455 0.00 0.00 0.00 2.29
6275 7957 4.082679 TGTGAGTGTATGTGCGTGTATGTA 60.083 41.667 0.00 0.00 0.00 2.29
6276 7958 4.860352 GTGAGTGTATGTGCGTGTATGTAA 59.140 41.667 0.00 0.00 0.00 2.41
6277 7959 5.004440 GTGAGTGTATGTGCGTGTATGTAAG 59.996 44.000 0.00 0.00 0.00 2.34
6278 7960 3.863424 AGTGTATGTGCGTGTATGTAAGC 59.137 43.478 0.00 0.00 0.00 3.09
6279 7961 2.855370 TGTATGTGCGTGTATGTAAGCG 59.145 45.455 0.00 0.00 0.00 4.68
6280 7962 2.004583 ATGTGCGTGTATGTAAGCGT 57.995 45.000 0.00 0.00 0.00 5.07
6281 7963 2.633199 TGTGCGTGTATGTAAGCGTA 57.367 45.000 0.00 0.00 0.00 4.42
6282 7964 3.153676 TGTGCGTGTATGTAAGCGTAT 57.846 42.857 0.00 0.00 0.00 3.06
6283 7965 2.855370 TGTGCGTGTATGTAAGCGTATG 59.145 45.455 0.00 0.00 0.00 2.39
6284 7966 1.855978 TGCGTGTATGTAAGCGTATGC 59.144 47.619 0.00 0.00 43.24 3.14
6285 7967 1.855978 GCGTGTATGTAAGCGTATGCA 59.144 47.619 10.11 0.00 46.23 3.96
6286 7968 2.283086 GCGTGTATGTAAGCGTATGCAA 59.717 45.455 10.11 0.00 46.23 4.08
6287 7969 3.059868 GCGTGTATGTAAGCGTATGCAAT 60.060 43.478 10.11 0.00 46.23 3.56
6288 7970 4.688063 CGTGTATGTAAGCGTATGCAATC 58.312 43.478 10.11 0.00 46.23 2.67
6289 7971 4.208253 CGTGTATGTAAGCGTATGCAATCA 59.792 41.667 10.11 5.15 46.23 2.57
6290 7972 5.107491 CGTGTATGTAAGCGTATGCAATCAT 60.107 40.000 10.11 11.75 46.23 2.45
6291 7973 6.088883 CGTGTATGTAAGCGTATGCAATCATA 59.911 38.462 10.11 10.85 46.23 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.864686 CCAAGCGCCGAATGGACG 61.865 66.667 2.29 0.00 36.27 4.79
3 4 1.776034 GATCCAAGCGCCGAATGGAC 61.776 60.000 19.93 12.30 45.47 4.02
4 5 1.523711 GATCCAAGCGCCGAATGGA 60.524 57.895 19.84 19.84 46.60 3.41
6 7 2.628106 CGATCCAAGCGCCGAATG 59.372 61.111 2.29 0.00 0.00 2.67
7 8 2.383245 ATCCGATCCAAGCGCCGAAT 62.383 55.000 2.29 0.00 0.00 3.34
50 51 0.804933 GCGGTTGATGGAGTCGTACC 60.805 60.000 0.00 0.00 33.24 3.34
103 104 1.771255 AGGGAGTGCATCTTCATACCC 59.229 52.381 0.00 0.00 35.74 3.69
134 135 8.452868 ACCAAGATCAATCTAGGAGATACTAGT 58.547 37.037 0.00 0.00 40.97 2.57
139 140 9.249053 GTATCACCAAGATCAATCTAGGAGATA 57.751 37.037 0.00 0.00 38.19 1.98
177 178 7.281549 GTGTTGGGGAACGTAGTAATAATTCAT 59.718 37.037 0.00 0.00 45.00 2.57
241 242 1.077716 ATAAAGGTGACTGGCGGCC 60.078 57.895 13.32 13.32 42.68 6.13
264 265 6.700520 GTCGGGTATAAATTAGTGGTTCTCAG 59.299 42.308 0.00 0.00 0.00 3.35
285 286 1.846541 AATGGCAAAACGTTTGTCGG 58.153 45.000 15.46 6.13 44.69 4.79
330 331 0.949105 AGGCAAAGTGACGTAAGCCG 60.949 55.000 8.67 0.00 46.34 5.52
341 342 2.726821 CATGGTCCATGTAGGCAAAGT 58.273 47.619 21.98 0.00 37.12 2.66
351 352 3.566742 CCACATATGTCACATGGTCCATG 59.433 47.826 27.31 27.31 46.18 3.66
352 353 3.202818 ACCACATATGTCACATGGTCCAT 59.797 43.478 5.07 0.00 39.51 3.41
353 354 2.575735 ACCACATATGTCACATGGTCCA 59.424 45.455 5.07 0.00 39.51 4.02
354 355 3.281727 ACCACATATGTCACATGGTCC 57.718 47.619 5.07 0.00 39.51 4.46
355 356 4.273480 GCTTACCACATATGTCACATGGTC 59.727 45.833 15.99 2.19 42.69 4.02
356 357 4.199310 GCTTACCACATATGTCACATGGT 58.801 43.478 16.56 16.56 45.56 3.55
357 358 4.198530 TGCTTACCACATATGTCACATGG 58.801 43.478 5.07 6.57 36.46 3.66
358 359 5.816449 TTGCTTACCACATATGTCACATG 57.184 39.130 5.07 0.00 0.00 3.21
359 360 7.408756 AAATTGCTTACCACATATGTCACAT 57.591 32.000 5.07 0.00 0.00 3.21
360 361 6.832520 AAATTGCTTACCACATATGTCACA 57.167 33.333 5.07 0.00 0.00 3.58
361 362 9.072294 GTTTAAATTGCTTACCACATATGTCAC 57.928 33.333 5.07 0.00 0.00 3.67
362 363 8.247562 GGTTTAAATTGCTTACCACATATGTCA 58.752 33.333 5.07 0.00 0.00 3.58
363 364 8.247562 TGGTTTAAATTGCTTACCACATATGTC 58.752 33.333 5.07 0.00 34.13 3.06
364 365 8.128322 TGGTTTAAATTGCTTACCACATATGT 57.872 30.769 1.41 1.41 34.13 2.29
365 366 8.994429 TTGGTTTAAATTGCTTACCACATATG 57.006 30.769 0.00 0.00 38.53 1.78
367 368 9.646427 GAATTGGTTTAAATTGCTTACCACATA 57.354 29.630 0.00 0.00 38.53 2.29
368 369 8.153550 TGAATTGGTTTAAATTGCTTACCACAT 58.846 29.630 0.00 0.00 38.53 3.21
369 370 7.500992 TGAATTGGTTTAAATTGCTTACCACA 58.499 30.769 0.00 0.00 38.53 4.17
370 371 7.954788 TGAATTGGTTTAAATTGCTTACCAC 57.045 32.000 0.00 0.00 38.53 4.16
371 372 8.964476 TTTGAATTGGTTTAAATTGCTTACCA 57.036 26.923 0.00 0.00 37.12 3.25
399 400 6.097696 ACTTACACCATGTAGGCAAAGTTTTT 59.902 34.615 0.00 0.00 43.14 1.94
400 401 5.596772 ACTTACACCATGTAGGCAAAGTTTT 59.403 36.000 0.00 0.00 43.14 2.43
401 402 5.137551 ACTTACACCATGTAGGCAAAGTTT 58.862 37.500 0.00 0.00 43.14 2.66
402 403 4.725490 ACTTACACCATGTAGGCAAAGTT 58.275 39.130 0.00 0.00 43.14 2.66
411 412 2.354303 CCGGCTCAACTTACACCATGTA 60.354 50.000 0.00 0.00 0.00 2.29
481 482 5.708230 ACACCAAGTATCAAAAATAGGCGAA 59.292 36.000 0.00 0.00 0.00 4.70
483 484 5.560966 ACACCAAGTATCAAAAATAGGCG 57.439 39.130 0.00 0.00 0.00 5.52
484 485 7.625828 ACTACACCAAGTATCAAAAATAGGC 57.374 36.000 0.00 0.00 30.93 3.93
517 519 8.108364 ACTGAGTAAATAGTACTCCACTACAGT 58.892 37.037 0.00 10.56 42.56 3.55
542 544 7.772332 ATGTAAGTTCAATCATTACTCGGAC 57.228 36.000 0.00 0.00 31.99 4.79
544 546 8.276325 GCTTATGTAAGTTCAATCATTACTCGG 58.724 37.037 2.11 0.00 35.75 4.63
659 661 3.388024 TCATTGTAAGATAGCGCTCCCTT 59.612 43.478 16.34 20.42 0.00 3.95
719 2324 7.434897 ACAATACAATCACAAATGTTCACACAC 59.565 33.333 0.00 0.00 35.03 3.82
720 2325 7.434602 CACAATACAATCACAAATGTTCACACA 59.565 33.333 0.00 0.00 37.31 3.72
721 2326 7.434897 ACACAATACAATCACAAATGTTCACAC 59.565 33.333 0.00 0.00 0.00 3.82
762 2373 9.139174 GATTGATATTTTCAACCGAATTTGTGT 57.861 29.630 0.00 0.00 46.80 3.72
795 2411 7.994425 TTCTTTCCTGTATATGCAAGAACAA 57.006 32.000 4.52 0.00 0.00 2.83
807 2426 7.224753 CACGTGTAGCATAATTCTTTCCTGTAT 59.775 37.037 7.58 0.00 0.00 2.29
856 2475 2.287608 GGAAGGAACAAAAGGAGCGTTG 60.288 50.000 0.00 0.00 0.00 4.10
880 2499 1.886777 GAAGCATGGAGGAGCGAGC 60.887 63.158 0.00 0.00 35.48 5.03
886 2509 0.547471 TGGGAGTGAAGCATGGAGGA 60.547 55.000 0.00 0.00 0.00 3.71
924 2547 2.999739 TTCGTTTGTGGAGACGGCCC 63.000 60.000 0.00 0.00 39.59 5.80
1005 2629 4.664267 AGCAGTGCCAGGGAGGGA 62.664 66.667 12.58 0.00 38.09 4.20
1007 2631 4.106925 GGAGCAGTGCCAGGGAGG 62.107 72.222 12.58 0.00 41.84 4.30
1029 2653 1.687493 GAGGAGGAGTGGGGTGAGG 60.687 68.421 0.00 0.00 0.00 3.86
1473 3097 4.208686 GTGGAGGAGCCGGCTACG 62.209 72.222 32.73 0.00 40.66 3.51
1773 3397 0.390472 GGAAGAAGTCGCTGGTGAGG 60.390 60.000 0.00 0.00 0.00 3.86
1817 3441 1.196012 GGTGGTGGAAGTAGAGGAGG 58.804 60.000 0.00 0.00 0.00 4.30
1818 3442 0.818296 CGGTGGTGGAAGTAGAGGAG 59.182 60.000 0.00 0.00 0.00 3.69
1819 3443 1.255667 GCGGTGGTGGAAGTAGAGGA 61.256 60.000 0.00 0.00 0.00 3.71
1912 3536 4.704833 CTGCGGTGGTGGAGGGTG 62.705 72.222 0.00 0.00 0.00 4.61
1936 3560 5.395546 GCATGGATATTGGGTTGTTGAATGT 60.396 40.000 0.00 0.00 0.00 2.71
2028 3652 4.094887 CCGTCGTCATTTTCCTTCATCATT 59.905 41.667 0.00 0.00 0.00 2.57
2037 3661 0.672401 TGCTCCCGTCGTCATTTTCC 60.672 55.000 0.00 0.00 0.00 3.13
2042 3666 3.362399 CTGCTGCTCCCGTCGTCAT 62.362 63.158 0.00 0.00 0.00 3.06
2076 3700 0.107703 GTCGGACTCCATCATTGCCA 60.108 55.000 0.00 0.00 0.00 4.92
2090 3714 3.760035 GCTTCAGCCTCGGTCGGA 61.760 66.667 0.00 0.00 34.31 4.55
2170 3797 0.402121 AAGGAGTTGGACTTGAGCCC 59.598 55.000 0.00 0.00 0.00 5.19
2309 3936 2.627791 CCACACTGTTCATGGCGAA 58.372 52.632 0.00 0.00 0.00 4.70
2339 3966 2.213499 CATGCCACCTTTCCTCGATAC 58.787 52.381 0.00 0.00 0.00 2.24
2340 3967 1.837439 ACATGCCACCTTTCCTCGATA 59.163 47.619 0.00 0.00 0.00 2.92
2458 4085 1.127951 CCGTGTAAAAGTGCATCCGAC 59.872 52.381 0.00 0.00 0.00 4.79
2470 4097 5.351233 CAAATAGTTGCTCACCGTGTAAA 57.649 39.130 0.00 0.00 0.00 2.01
2501 4143 4.087182 TCCAAGATATATCCTGACGACCC 58.913 47.826 12.15 0.00 0.00 4.46
2506 4148 7.003402 AGCTCTTTCCAAGATATATCCTGAC 57.997 40.000 12.15 0.00 36.82 3.51
2597 4239 2.061773 GCCGCATGCTACTACTATGTG 58.938 52.381 17.13 0.00 36.87 3.21
2681 4323 8.770438 AGTAAAGCATTTGTGAAACTTTTTCA 57.230 26.923 0.00 0.00 39.63 2.69
2691 4336 8.710551 CAATATGCAAAAGTAAAGCATTTGTGA 58.289 29.630 4.36 0.00 45.98 3.58
2714 4359 5.221702 CCACCTTGAAATTTCCCAAGACAAT 60.222 40.000 15.48 0.00 41.56 2.71
2723 4368 3.230976 ACTGGACCACCTTGAAATTTCC 58.769 45.455 15.48 0.00 37.04 3.13
2754 4399 0.523335 GATCACCGCAAATGAACCGC 60.523 55.000 0.00 0.00 0.00 5.68
2756 4401 2.083774 TGAGATCACCGCAAATGAACC 58.916 47.619 0.00 0.00 0.00 3.62
2761 4407 2.092753 AGACCATGAGATCACCGCAAAT 60.093 45.455 0.00 0.00 0.00 2.32
2828 4479 5.465056 ACAAAAACAGGCACAAATATTTCCG 59.535 36.000 0.00 0.00 0.00 4.30
2862 4513 9.832445 TGTTCTGTTCTTAGAAGTTCTAAATGT 57.168 29.630 22.47 0.00 38.38 2.71
2865 4516 9.832445 ACATGTTCTGTTCTTAGAAGTTCTAAA 57.168 29.630 22.47 12.84 35.04 1.85
2866 4517 9.832445 AACATGTTCTGTTCTTAGAAGTTCTAA 57.168 29.630 21.30 21.30 44.99 2.10
2911 4562 6.722301 ACTCATGCGATCAAATTATGTTCTG 58.278 36.000 0.00 0.00 0.00 3.02
3025 4679 7.869937 GTGATATAGCAGCTTAGAATGTGAGAA 59.130 37.037 0.00 0.00 0.00 2.87
3073 4727 7.852550 TGCAAATGAAAATATATGGGGATCA 57.147 32.000 0.00 0.00 0.00 2.92
3095 4749 5.493133 TTATCATGTCGGGTTTGTATTGC 57.507 39.130 0.00 0.00 0.00 3.56
3100 4754 9.621629 TCTTATATTTTATCATGTCGGGTTTGT 57.378 29.630 0.00 0.00 0.00 2.83
3151 4805 6.808008 ATGTAGGTGACAAATGAAACTGAG 57.192 37.500 0.00 0.00 42.78 3.35
3152 4806 7.284261 TGAAATGTAGGTGACAAATGAAACTGA 59.716 33.333 0.00 0.00 42.78 3.41
3153 4807 7.424803 TGAAATGTAGGTGACAAATGAAACTG 58.575 34.615 0.00 0.00 42.78 3.16
3154 4808 7.581213 TGAAATGTAGGTGACAAATGAAACT 57.419 32.000 0.00 0.00 42.78 2.66
3155 4809 8.702438 CAATGAAATGTAGGTGACAAATGAAAC 58.298 33.333 0.00 0.00 42.78 2.78
3156 4810 8.420222 ACAATGAAATGTAGGTGACAAATGAAA 58.580 29.630 0.00 0.00 42.78 2.69
3157 4811 7.950512 ACAATGAAATGTAGGTGACAAATGAA 58.049 30.769 0.00 0.00 42.78 2.57
3158 4812 7.448161 AGACAATGAAATGTAGGTGACAAATGA 59.552 33.333 0.00 0.00 42.78 2.57
3159 4813 7.596494 AGACAATGAAATGTAGGTGACAAATG 58.404 34.615 0.00 0.00 42.78 2.32
3160 4814 7.765695 AGACAATGAAATGTAGGTGACAAAT 57.234 32.000 0.00 0.00 42.78 2.32
3161 4815 7.936847 AGTAGACAATGAAATGTAGGTGACAAA 59.063 33.333 0.00 0.00 42.78 2.83
3162 4816 7.450074 AGTAGACAATGAAATGTAGGTGACAA 58.550 34.615 0.00 0.00 42.78 3.18
3163 4817 7.004555 AGTAGACAATGAAATGTAGGTGACA 57.995 36.000 0.00 0.00 43.97 3.58
3164 4818 7.907214 AAGTAGACAATGAAATGTAGGTGAC 57.093 36.000 0.00 0.00 32.57 3.67
3190 4844 6.431543 TGAAATTAGATAGTGACCCGCAAAAA 59.568 34.615 0.00 0.00 0.00 1.94
3268 4922 5.144832 ACCAATTTACAGCCACCTTTACTT 58.855 37.500 0.00 0.00 0.00 2.24
3272 4926 3.844640 AGACCAATTTACAGCCACCTTT 58.155 40.909 0.00 0.00 0.00 3.11
3273 4927 3.525800 AGACCAATTTACAGCCACCTT 57.474 42.857 0.00 0.00 0.00 3.50
3274 4928 3.181434 TGAAGACCAATTTACAGCCACCT 60.181 43.478 0.00 0.00 0.00 4.00
3275 4929 3.153919 TGAAGACCAATTTACAGCCACC 58.846 45.455 0.00 0.00 0.00 4.61
3276 4930 4.846779 TTGAAGACCAATTTACAGCCAC 57.153 40.909 0.00 0.00 0.00 5.01
3291 4945 3.245016 ACCACTGGAAGCATGATTGAAGA 60.245 43.478 0.00 0.00 37.60 2.87
3399 5053 3.288092 GCCGGTGATTATCCTCCTTTTT 58.712 45.455 1.90 0.00 0.00 1.94
3413 5067 2.526450 CTTGATGCAGAGGCCGGTGA 62.526 60.000 11.28 0.00 40.13 4.02
3447 5101 4.817464 ACTGGCACTTTCACGTTAATACAA 59.183 37.500 0.00 0.00 0.00 2.41
3738 5394 9.971922 GCTCTTAGAATAATGTGCCAATTAAAT 57.028 29.630 0.00 0.00 0.00 1.40
3981 5638 4.317839 CGTTTGAAGGCGAAAGGTATATCG 60.318 45.833 0.00 0.00 41.81 2.92
4110 5767 0.168788 AGTGCGGCGATTCACAATTG 59.831 50.000 12.98 3.24 35.76 2.32
4224 5881 0.384669 GCTCGGTTACTAGCGGATGT 59.615 55.000 0.00 0.00 44.94 3.06
4225 5882 0.318784 GGCTCGGTTACTAGCGGATG 60.319 60.000 0.00 0.00 44.94 3.51
4234 5891 1.398390 CAGATTGCTTGGCTCGGTTAC 59.602 52.381 0.00 0.00 0.00 2.50
4316 5974 9.784531 CTCAACCATATTTTGTGTATCCTATCT 57.215 33.333 0.00 0.00 0.00 1.98
4317 5975 9.778741 TCTCAACCATATTTTGTGTATCCTATC 57.221 33.333 0.00 0.00 0.00 2.08
4318 5976 9.561069 GTCTCAACCATATTTTGTGTATCCTAT 57.439 33.333 0.00 0.00 0.00 2.57
4320 5978 6.828785 GGTCTCAACCATATTTTGTGTATCCT 59.171 38.462 0.00 0.00 45.68 3.24
4321 5979 7.027778 GGTCTCAACCATATTTTGTGTATCC 57.972 40.000 0.00 0.00 45.68 2.59
4337 5995 0.765510 AGGTCAAGGGTGGTCTCAAC 59.234 55.000 0.00 0.00 0.00 3.18
4338 5996 1.518367 AAGGTCAAGGGTGGTCTCAA 58.482 50.000 0.00 0.00 0.00 3.02
4339 5997 1.142870 CAAAGGTCAAGGGTGGTCTCA 59.857 52.381 0.00 0.00 0.00 3.27
4340 5998 1.897560 CAAAGGTCAAGGGTGGTCTC 58.102 55.000 0.00 0.00 0.00 3.36
4341 5999 0.178990 GCAAAGGTCAAGGGTGGTCT 60.179 55.000 0.00 0.00 0.00 3.85
4344 6002 1.463553 GGTGCAAAGGTCAAGGGTGG 61.464 60.000 0.00 0.00 0.00 4.61
4378 6036 4.898265 TCTTGTCATGGACCATTGGAAAAA 59.102 37.500 10.37 0.00 0.00 1.94
4379 6037 4.478203 TCTTGTCATGGACCATTGGAAAA 58.522 39.130 10.37 0.77 0.00 2.29
4380 6038 4.111255 TCTTGTCATGGACCATTGGAAA 57.889 40.909 10.37 0.00 0.00 3.13
4381 6039 3.805066 TCTTGTCATGGACCATTGGAA 57.195 42.857 10.37 0.00 0.00 3.53
4382 6040 4.320546 AATCTTGTCATGGACCATTGGA 57.679 40.909 10.37 0.00 0.00 3.53
4391 6049 7.877097 TCCAAACCAAAAATAATCTTGTCATGG 59.123 33.333 0.00 0.00 0.00 3.66
4408 6066 5.994668 GCAAAAATGGTAATCTCCAAACCAA 59.005 36.000 0.00 0.00 45.91 3.67
4410 6068 5.546526 TGCAAAAATGGTAATCTCCAAACC 58.453 37.500 0.00 0.00 41.09 3.27
4411 6069 6.146021 CACTGCAAAAATGGTAATCTCCAAAC 59.854 38.462 0.00 0.00 41.09 2.93
4436 6097 6.384305 AGGCCCTGGTAGTATATGAATATGAC 59.616 42.308 0.00 0.00 0.00 3.06
4443 6104 3.630625 ACAGGCCCTGGTAGTATATGA 57.369 47.619 16.70 0.00 35.51 2.15
4444 6105 5.338381 CCATTACAGGCCCTGGTAGTATATG 60.338 48.000 16.70 7.22 35.51 1.78
4445 6106 4.783227 CCATTACAGGCCCTGGTAGTATAT 59.217 45.833 16.70 0.00 35.51 0.86
4446 6107 4.164981 CCATTACAGGCCCTGGTAGTATA 58.835 47.826 16.70 0.00 35.51 1.47
4447 6108 2.979678 CCATTACAGGCCCTGGTAGTAT 59.020 50.000 16.70 0.00 35.51 2.12
4483 6144 7.555554 CCTGAAGAAAATGGATGAATAGTCAGT 59.444 37.037 0.00 0.00 37.14 3.41
4496 6157 2.298163 ACAAGCTGCCTGAAGAAAATGG 59.702 45.455 5.06 0.00 0.00 3.16
4497 6158 3.005050 TCACAAGCTGCCTGAAGAAAATG 59.995 43.478 5.06 0.00 0.00 2.32
4498 6159 3.225104 TCACAAGCTGCCTGAAGAAAAT 58.775 40.909 5.06 0.00 0.00 1.82
4502 6163 1.348696 TCATCACAAGCTGCCTGAAGA 59.651 47.619 5.06 3.19 0.00 2.87
4503 6164 1.467734 GTCATCACAAGCTGCCTGAAG 59.532 52.381 5.06 0.00 0.00 3.02
4523 6184 4.219288 AGGAACAATCTGCTGCCTTTTAAG 59.781 41.667 0.00 0.00 0.00 1.85
4526 6187 2.601905 AGGAACAATCTGCTGCCTTTT 58.398 42.857 0.00 0.00 0.00 2.27
4582 6243 4.722194 CCGATTTGTGTCGACATTCATTT 58.278 39.130 23.12 6.32 44.06 2.32
4590 6251 2.095843 GCGCCGATTTGTGTCGAC 59.904 61.111 9.11 9.11 44.06 4.20
4611 6272 0.755327 AGTTTGGAAGCTTTGGCGGT 60.755 50.000 0.00 0.00 44.37 5.68
4612 6273 0.389025 AAGTTTGGAAGCTTTGGCGG 59.611 50.000 0.00 0.00 44.37 6.13
4613 6274 1.066908 TCAAGTTTGGAAGCTTTGGCG 59.933 47.619 0.00 0.00 44.37 5.69
4614 6275 2.159114 TGTCAAGTTTGGAAGCTTTGGC 60.159 45.455 0.00 0.00 39.06 4.52
4631 6292 3.706594 CTGCTAGATTAAGGAGGGTGTCA 59.293 47.826 0.00 0.00 31.75 3.58
4646 6307 0.109272 CGCCTTTGACGTCTGCTAGA 60.109 55.000 17.92 0.00 0.00 2.43
4670 6331 1.270947 TGTAGCAGGGTGGTTTTACCG 60.271 52.381 0.00 0.00 42.58 4.02
4673 6334 2.976882 AGAGTGTAGCAGGGTGGTTTTA 59.023 45.455 0.00 0.00 0.00 1.52
4713 6374 3.006537 TCGGATTTTTCGTCTTCTGACCT 59.993 43.478 0.00 0.00 39.94 3.85
4743 6404 4.202223 ACGGAACTGTATGTGACTTTCTGT 60.202 41.667 0.00 0.00 36.39 3.41
4750 6411 3.581755 TGCTTACGGAACTGTATGTGAC 58.418 45.455 0.00 0.00 0.00 3.67
4751 6412 3.945981 TGCTTACGGAACTGTATGTGA 57.054 42.857 0.00 0.00 0.00 3.58
4883 6544 5.005779 CAGAATCACCGAAGTTATCTTTCCG 59.994 44.000 0.00 0.00 33.64 4.30
4886 6547 5.491982 AGCAGAATCACCGAAGTTATCTTT 58.508 37.500 0.00 0.00 33.64 2.52
4895 6556 1.173913 TCTCGAGCAGAATCACCGAA 58.826 50.000 7.81 0.00 0.00 4.30
4986 6647 2.294078 CCTCACCCCTCACCTGTCC 61.294 68.421 0.00 0.00 0.00 4.02
4994 6655 0.689412 CCTTCCTCTCCTCACCCCTC 60.689 65.000 0.00 0.00 0.00 4.30
5039 6700 0.180642 TGTTGCCGTGGAAGTAACCA 59.819 50.000 0.00 0.00 37.63 3.67
5166 6827 2.450479 AAAGACCTCGCGGACCCAAG 62.450 60.000 6.13 0.00 0.00 3.61
5168 6829 2.920912 AAAGACCTCGCGGACCCA 60.921 61.111 6.13 0.00 0.00 4.51
5190 6851 2.534396 TTGGGGTGGTTGCCGAGAT 61.534 57.895 0.00 0.00 0.00 2.75
5191 6852 3.172106 TTGGGGTGGTTGCCGAGA 61.172 61.111 0.00 0.00 0.00 4.04
5220 6881 1.737816 CTTGCTGGCCATGCATACC 59.262 57.895 24.38 10.37 40.34 2.73
5237 6898 1.985116 GGAGTTGCCGTCTCCTCCT 60.985 63.158 10.41 0.00 45.56 3.69
5283 6944 0.910338 GTTCCTTCCTAGTCCCCACC 59.090 60.000 0.00 0.00 0.00 4.61
5284 6945 0.910338 GGTTCCTTCCTAGTCCCCAC 59.090 60.000 0.00 0.00 0.00 4.61
5308 6969 4.860907 CCTTCAAAAATGAGCATGCAGTAC 59.139 41.667 21.98 8.73 0.00 2.73
5309 6970 4.766373 TCCTTCAAAAATGAGCATGCAGTA 59.234 37.500 21.98 5.68 0.00 2.74
5310 6971 3.575256 TCCTTCAAAAATGAGCATGCAGT 59.425 39.130 21.98 0.00 0.00 4.40
5311 6972 4.182693 TCCTTCAAAAATGAGCATGCAG 57.817 40.909 21.98 3.82 0.00 4.41
5312 6973 4.202233 TGTTCCTTCAAAAATGAGCATGCA 60.202 37.500 21.98 0.00 0.00 3.96
5313 6974 4.309099 TGTTCCTTCAAAAATGAGCATGC 58.691 39.130 10.51 10.51 0.00 4.06
5314 6975 6.425721 ACATTGTTCCTTCAAAAATGAGCATG 59.574 34.615 4.57 0.00 33.47 4.06
5358 7019 8.951614 TGGGCAGTATATATATACCCATCTAC 57.048 38.462 23.49 11.86 39.42 2.59
5363 7024 9.547279 CTATCATGGGCAGTATATATATACCCA 57.453 37.037 22.68 22.68 39.42 4.51
5440 7101 9.273016 CGATCCACAAATATACAATAGGACTTT 57.727 33.333 0.00 0.00 0.00 2.66
5448 7109 7.873719 TTCCAACGATCCACAAATATACAAT 57.126 32.000 0.00 0.00 0.00 2.71
5590 7255 8.918202 TCAGAAAAGGAGAAAACATTAAGCTA 57.082 30.769 0.00 0.00 0.00 3.32
5636 7301 2.170397 TGTGGCATCGGTTGATACAGAT 59.830 45.455 0.00 0.00 39.36 2.90
5646 7311 0.034186 ATGATGGTTGTGGCATCGGT 60.034 50.000 0.00 0.00 0.00 4.69
5709 7376 5.221783 ACCGACTGAGTTTTTACCTGGTTAT 60.222 40.000 3.84 0.00 0.00 1.89
5791 7463 6.833933 AGGGTATAGGTTCATTCATTTTGGAC 59.166 38.462 0.00 0.00 0.00 4.02
5798 7470 8.365647 CGTAGTTTAGGGTATAGGTTCATTCAT 58.634 37.037 0.00 0.00 0.00 2.57
5799 7471 7.342799 ACGTAGTTTAGGGTATAGGTTCATTCA 59.657 37.037 0.00 0.00 37.78 2.57
5800 7472 7.720442 ACGTAGTTTAGGGTATAGGTTCATTC 58.280 38.462 0.00 0.00 37.78 2.67
5801 7473 7.666063 ACGTAGTTTAGGGTATAGGTTCATT 57.334 36.000 0.00 0.00 37.78 2.57
5817 7489 8.790718 ACATTCGGATGTATATAGACGTAGTTT 58.209 33.333 7.81 0.00 43.28 2.66
5818 7490 8.332996 ACATTCGGATGTATATAGACGTAGTT 57.667 34.615 7.81 0.00 43.28 2.24
5819 7491 7.918536 ACATTCGGATGTATATAGACGTAGT 57.081 36.000 7.81 0.00 45.17 2.73
5820 7492 9.096160 ACTACATTCGGATGTATATAGACGTAG 57.904 37.037 16.89 5.76 45.20 3.51
5821 7493 9.091784 GACTACATTCGGATGTATATAGACGTA 57.908 37.037 16.89 0.00 45.20 3.57
5822 7494 7.065563 GGACTACATTCGGATGTATATAGACGT 59.934 40.741 16.89 9.37 45.20 4.34
5823 7495 7.065443 TGGACTACATTCGGATGTATATAGACG 59.935 40.741 16.89 6.27 45.20 4.18
5824 7496 8.277490 TGGACTACATTCGGATGTATATAGAC 57.723 38.462 16.89 7.51 45.20 2.59
5827 7499 9.916360 ACTATGGACTACATTCGGATGTATATA 57.084 33.333 16.89 11.70 45.20 0.86
5828 7500 8.687242 CACTATGGACTACATTCGGATGTATAT 58.313 37.037 16.89 8.57 45.20 0.86
5829 7501 7.886446 TCACTATGGACTACATTCGGATGTATA 59.114 37.037 16.89 6.55 45.20 1.47
5830 7502 6.719829 TCACTATGGACTACATTCGGATGTAT 59.280 38.462 16.89 5.69 45.20 2.29
5831 7503 6.066032 TCACTATGGACTACATTCGGATGTA 58.934 40.000 15.76 15.76 44.51 2.29
5833 7505 5.453567 TCACTATGGACTACATTCGGATG 57.546 43.478 0.88 0.88 41.03 3.51
5834 7506 6.479972 TTTCACTATGGACTACATTCGGAT 57.520 37.500 0.00 0.00 41.03 4.18
5835 7507 5.925506 TTTCACTATGGACTACATTCGGA 57.074 39.130 0.00 0.00 41.03 4.55
5836 7508 6.516718 AGATTTCACTATGGACTACATTCGG 58.483 40.000 0.00 0.00 41.03 4.30
5837 7509 7.429633 AGAGATTTCACTATGGACTACATTCG 58.570 38.462 0.00 0.00 41.03 3.34
5864 7536 8.645110 CCCTCCGTTCCTAAATATAAGTCTTTA 58.355 37.037 0.00 0.00 0.00 1.85
5865 7537 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5866 7538 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5867 7539 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5868 7540 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5869 7541 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5870 7542 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5871 7543 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
5872 7544 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
5873 7545 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
5874 7546 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
5875 7547 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
5876 7548 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
5877 7549 3.245371 TGTTCTACTCCCTCCGTTCCTAA 60.245 47.826 0.00 0.00 0.00 2.69
5878 7550 2.309755 TGTTCTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
5879 7551 1.076677 TGTTCTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
5880 7552 1.553706 TGTTCTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
5881 7553 5.290386 CAATATGTTCTACTCCCTCCGTTC 58.710 45.833 0.00 0.00 0.00 3.95
5882 7554 4.443034 GCAATATGTTCTACTCCCTCCGTT 60.443 45.833 0.00 0.00 0.00 4.44
5883 7555 3.069729 GCAATATGTTCTACTCCCTCCGT 59.930 47.826 0.00 0.00 0.00 4.69
5884 7556 3.069586 TGCAATATGTTCTACTCCCTCCG 59.930 47.826 0.00 0.00 0.00 4.63
5885 7557 4.689612 TGCAATATGTTCTACTCCCTCC 57.310 45.455 0.00 0.00 0.00 4.30
5886 7558 5.615289 ACATGCAATATGTTCTACTCCCTC 58.385 41.667 0.00 0.00 0.00 4.30
5887 7559 5.636903 ACATGCAATATGTTCTACTCCCT 57.363 39.130 0.00 0.00 0.00 4.20
5888 7560 6.543831 AGAAACATGCAATATGTTCTACTCCC 59.456 38.462 4.71 0.00 40.94 4.30
5889 7561 7.559590 AGAAACATGCAATATGTTCTACTCC 57.440 36.000 4.71 0.00 40.94 3.85
5890 7562 9.846248 AAAAGAAACATGCAATATGTTCTACTC 57.154 29.630 4.71 0.00 40.94 2.59
5914 7586 4.043037 ACGTAATTTGTTCCCGCAAAAA 57.957 36.364 0.00 0.00 41.03 1.94
5920 7592 4.628333 ACAGTCATACGTAATTTGTTCCCG 59.372 41.667 0.00 0.00 0.00 5.14
6044 7725 1.930825 CGCTTTTGTTTTTGCGGGG 59.069 52.632 0.00 0.00 43.97 5.73
6077 7758 1.548719 CACCACACGGAACCTCATCTA 59.451 52.381 0.00 0.00 35.59 1.98
6090 7771 1.021968 GTGAACTGGTTCCACCACAC 58.978 55.000 10.44 0.00 44.79 3.82
6240 7922 5.702670 ACATACACTCACACAAAATCCTCTG 59.297 40.000 0.00 0.00 0.00 3.35
6241 7923 5.702670 CACATACACTCACACAAAATCCTCT 59.297 40.000 0.00 0.00 0.00 3.69
6242 7924 5.617751 GCACATACACTCACACAAAATCCTC 60.618 44.000 0.00 0.00 0.00 3.71
6243 7925 4.216257 GCACATACACTCACACAAAATCCT 59.784 41.667 0.00 0.00 0.00 3.24
6244 7926 4.475944 GCACATACACTCACACAAAATCC 58.524 43.478 0.00 0.00 0.00 3.01
6245 7927 4.151070 CGCACATACACTCACACAAAATC 58.849 43.478 0.00 0.00 0.00 2.17
6246 7928 3.563808 ACGCACATACACTCACACAAAAT 59.436 39.130 0.00 0.00 0.00 1.82
6247 7929 2.939756 ACGCACATACACTCACACAAAA 59.060 40.909 0.00 0.00 0.00 2.44
6249 7931 1.864082 CACGCACATACACTCACACAA 59.136 47.619 0.00 0.00 0.00 3.33
6251 7933 1.497991 ACACGCACATACACTCACAC 58.502 50.000 0.00 0.00 0.00 3.82
6252 7934 3.249917 CATACACGCACATACACTCACA 58.750 45.455 0.00 0.00 0.00 3.58
6253 7935 3.250744 ACATACACGCACATACACTCAC 58.749 45.455 0.00 0.00 0.00 3.51
6254 7936 3.586100 ACATACACGCACATACACTCA 57.414 42.857 0.00 0.00 0.00 3.41
6255 7937 4.026804 GCTTACATACACGCACATACACTC 60.027 45.833 0.00 0.00 0.00 3.51
6256 7938 3.863424 GCTTACATACACGCACATACACT 59.137 43.478 0.00 0.00 0.00 3.55
6257 7939 3.301579 CGCTTACATACACGCACATACAC 60.302 47.826 0.00 0.00 0.00 2.90
6258 7940 2.855370 CGCTTACATACACGCACATACA 59.145 45.455 0.00 0.00 0.00 2.29
6259 7941 2.855963 ACGCTTACATACACGCACATAC 59.144 45.455 0.00 0.00 0.00 2.39
6260 7942 3.153676 ACGCTTACATACACGCACATA 57.846 42.857 0.00 0.00 0.00 2.29
6261 7943 2.004583 ACGCTTACATACACGCACAT 57.995 45.000 0.00 0.00 0.00 3.21
6262 7944 2.633199 TACGCTTACATACACGCACA 57.367 45.000 0.00 0.00 0.00 4.57
6263 7945 2.347292 GCATACGCTTACATACACGCAC 60.347 50.000 0.00 0.00 34.30 5.34
6264 7946 1.855978 GCATACGCTTACATACACGCA 59.144 47.619 0.00 0.00 34.30 5.24
6265 7947 1.855978 TGCATACGCTTACATACACGC 59.144 47.619 0.00 0.00 39.64 5.34
6266 7948 4.208253 TGATTGCATACGCTTACATACACG 59.792 41.667 0.00 0.00 39.64 4.49
6267 7949 5.651172 TGATTGCATACGCTTACATACAC 57.349 39.130 0.00 0.00 39.64 2.90
6268 7950 7.346208 GTATGATTGCATACGCTTACATACA 57.654 36.000 14.49 0.00 45.15 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.