Multiple sequence alignment - TraesCS1A01G327000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G327000 chr1A 100.000 7654 0 0 1 7654 516773088 516780741 0.000000e+00 14135.0
1 TraesCS1A01G327000 chr1A 96.875 32 0 1 7527 7557 19300060 19300091 1.400000e-02 52.8
2 TraesCS1A01G327000 chr1A 96.875 32 0 1 7527 7557 19410318 19410349 1.400000e-02 52.8
3 TraesCS1A01G327000 chr1B 94.603 2316 101 10 795 3106 568526691 568528986 0.000000e+00 3563.0
4 TraesCS1A01G327000 chr1B 95.359 1810 41 11 4097 5867 568529898 568531703 0.000000e+00 2837.0
5 TraesCS1A01G327000 chr1B 91.195 1465 85 18 5911 7343 568531702 568533154 0.000000e+00 1951.0
6 TraesCS1A01G327000 chr1B 96.291 647 22 2 3118 3762 568528971 568529617 0.000000e+00 1061.0
7 TraesCS1A01G327000 chr1B 80.432 787 76 38 1 745 568525506 568526256 5.260000e-146 529.0
8 TraesCS1A01G327000 chr1B 96.911 259 8 0 3756 4014 568529641 568529899 1.180000e-117 435.0
9 TraesCS1A01G327000 chr1B 88.034 117 7 2 7408 7524 568533169 568533278 1.730000e-26 132.0
10 TraesCS1A01G327000 chr1B 100.000 30 0 0 7525 7554 497276026 497276055 1.000000e-03 56.5
11 TraesCS1A01G327000 chr1D 92.470 2138 107 36 5109 7240 420544442 420546531 0.000000e+00 3007.0
12 TraesCS1A01G327000 chr1D 93.166 1156 58 17 1955 3106 420541452 420542590 0.000000e+00 1677.0
13 TraesCS1A01G327000 chr1D 93.441 1113 55 8 816 1926 420540359 420541455 0.000000e+00 1635.0
14 TraesCS1A01G327000 chr1D 94.973 935 23 14 4097 5013 420543501 420544429 0.000000e+00 1445.0
15 TraesCS1A01G327000 chr1D 96.909 647 17 3 3118 3762 420542575 420543220 0.000000e+00 1081.0
16 TraesCS1A01G327000 chr1D 89.241 790 24 20 2 761 420539600 420540358 0.000000e+00 931.0
17 TraesCS1A01G327000 chr1D 95.753 259 11 0 3756 4014 420543244 420543502 1.190000e-112 418.0
18 TraesCS1A01G327000 chr1D 92.920 113 7 1 5003 5114 12312581 12312469 6.150000e-36 163.0
19 TraesCS1A01G327000 chr1D 94.595 74 4 0 7564 7637 420546678 420546751 1.750000e-21 115.0
20 TraesCS1A01G327000 chr1D 95.000 40 1 1 7353 7392 341785981 341785943 2.310000e-05 62.1
21 TraesCS1A01G327000 chrUn 98.688 381 5 0 4500 4880 480939953 480940333 0.000000e+00 676.0
22 TraesCS1A01G327000 chrUn 96.875 32 0 1 7527 7557 252717039 252717070 1.400000e-02 52.8
23 TraesCS1A01G327000 chr3D 78.481 316 47 16 3397 3703 422754541 422754238 3.650000e-43 187.0
24 TraesCS1A01G327000 chr3D 94.318 88 5 0 4012 4099 203684545 203684632 1.340000e-27 135.0
25 TraesCS1A01G327000 chr3D 97.059 34 0 1 7353 7386 398268999 398268967 1.000000e-03 56.5
26 TraesCS1A01G327000 chr3B 78.481 316 47 16 3397 3703 551005806 551005503 3.650000e-43 187.0
27 TraesCS1A01G327000 chr3B 88.079 151 18 0 1023 1173 551007947 551007797 6.100000e-41 180.0
28 TraesCS1A01G327000 chr3B 83.099 71 10 1 4184 4254 327921418 327921486 6.410000e-06 63.9
29 TraesCS1A01G327000 chr3B 97.222 36 1 0 7350 7385 50534629 50534664 2.310000e-05 62.1
30 TraesCS1A01G327000 chr3A 78.481 316 47 16 3397 3703 566122803 566123106 3.650000e-43 187.0
31 TraesCS1A01G327000 chr3A 87.838 74 7 1 4184 4257 666821013 666820942 1.370000e-12 86.1
32 TraesCS1A01G327000 chr7B 94.231 104 6 0 5008 5111 562993169 562993066 7.950000e-35 159.0
33 TraesCS1A01G327000 chr7B 90.833 120 9 2 5008 5126 744398551 744398433 7.950000e-35 159.0
34 TraesCS1A01G327000 chr7B 92.222 90 6 1 4016 4105 245854416 245854328 8.060000e-25 126.0
35 TraesCS1A01G327000 chr4D 93.519 108 5 2 5008 5114 13198275 13198381 7.950000e-35 159.0
36 TraesCS1A01G327000 chr4D 90.083 121 11 1 4993 5112 205963561 205963441 1.030000e-33 156.0
37 TraesCS1A01G327000 chr4D 95.455 88 4 0 4012 4099 28237808 28237895 2.880000e-29 141.0
38 TraesCS1A01G327000 chr4D 94.253 87 5 0 4012 4098 481110366 481110280 4.820000e-27 134.0
39 TraesCS1A01G327000 chr7A 90.598 117 9 2 5005 5120 735412094 735412209 3.700000e-33 154.0
40 TraesCS1A01G327000 chr7A 95.402 87 4 0 4012 4098 83936105 83936191 1.040000e-28 139.0
41 TraesCS1A01G327000 chr5B 90.517 116 9 2 4998 5112 295217377 295217263 1.330000e-32 152.0
42 TraesCS1A01G327000 chr5B 97.297 37 1 0 7349 7385 687805640 687805604 6.410000e-06 63.9
43 TraesCS1A01G327000 chr5B 96.774 31 1 0 7457 7487 47047309 47047339 1.400000e-02 52.8
44 TraesCS1A01G327000 chr5B 96.774 31 1 0 7457 7487 47076181 47076211 1.400000e-02 52.8
45 TraesCS1A01G327000 chr5B 96.774 31 1 0 7457 7487 47081690 47081720 1.400000e-02 52.8
46 TraesCS1A01G327000 chr7D 89.167 120 11 2 5008 5126 632327995 632327877 1.720000e-31 148.0
47 TraesCS1A01G327000 chr7D 93.407 91 5 1 4008 4098 414277688 414277599 4.820000e-27 134.0
48 TraesCS1A01G327000 chr7D 97.222 36 1 0 7349 7384 185912441 185912406 2.310000e-05 62.1
49 TraesCS1A01G327000 chr7D 100.000 30 0 0 7528 7557 416626605 416626634 1.000000e-03 56.5
50 TraesCS1A01G327000 chr5A 94.444 90 4 1 4013 4102 355734056 355734144 3.720000e-28 137.0
51 TraesCS1A01G327000 chr5A 97.059 34 1 0 7524 7557 681084506 681084539 2.980000e-04 58.4
52 TraesCS1A01G327000 chr5A 100.000 29 0 0 7527 7555 183805962 183805934 4.000000e-03 54.7
53 TraesCS1A01G327000 chr5A 96.774 31 1 0 7457 7487 37063233 37063263 1.400000e-02 52.8
54 TraesCS1A01G327000 chr6B 94.253 87 5 0 4012 4098 617177204 617177290 4.820000e-27 134.0
55 TraesCS1A01G327000 chr6B 91.667 96 5 2 4006 4099 308529198 308529292 6.230000e-26 130.0
56 TraesCS1A01G327000 chr6B 85.135 74 9 1 4184 4257 172706353 172706282 2.960000e-09 75.0
57 TraesCS1A01G327000 chr6A 97.297 37 1 0 7349 7385 549230394 549230358 6.410000e-06 63.9
58 TraesCS1A01G327000 chr6A 95.000 40 1 1 7353 7392 57116790 57116828 2.310000e-05 62.1
59 TraesCS1A01G327000 chr6A 96.875 32 0 1 7527 7557 22203330 22203299 1.400000e-02 52.8
60 TraesCS1A01G327000 chr4A 95.000 40 1 1 7353 7392 575901797 575901759 2.310000e-05 62.1
61 TraesCS1A01G327000 chr2B 81.690 71 11 1 4184 4254 278320979 278321047 2.980000e-04 58.4
62 TraesCS1A01G327000 chr6D 100.000 30 0 0 7527 7556 448683289 448683260 1.000000e-03 56.5
63 TraesCS1A01G327000 chr2A 96.875 32 1 0 7353 7384 431084497 431084466 4.000000e-03 54.7
64 TraesCS1A01G327000 chr5D 96.774 31 1 0 7457 7487 46048682 46048712 1.400000e-02 52.8
65 TraesCS1A01G327000 chr5D 100.000 28 0 0 7459 7486 491793680 491793653 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G327000 chr1A 516773088 516780741 7653 False 14135.000000 14135 100.000000 1 7654 1 chr1A.!!$F3 7653
1 TraesCS1A01G327000 chr1B 568525506 568533278 7772 False 1501.142857 3563 91.832143 1 7524 7 chr1B.!!$F2 7523
2 TraesCS1A01G327000 chr1D 420539600 420546751 7151 False 1288.625000 3007 93.818500 2 7637 8 chr1D.!!$F1 7635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.036388 CACGGACCTGGTACATTGCT 60.036 55.000 10.24 0.00 38.20 3.91 F
282 295 0.108585 TCGCAAAGTCCCTGCTCTTT 59.891 50.000 0.00 0.00 37.67 2.52 F
636 688 0.182775 AACCGGGTTCCCATGATAGC 59.817 55.000 6.59 0.00 0.00 2.97 F
1799 2239 0.458716 GTCGTCTAGTTGGCCAGCTC 60.459 60.000 26.87 11.04 0.00 4.09 F
1917 2357 2.422597 TCCTCGTGTTTGGCATAGTTG 58.577 47.619 0.00 0.00 0.00 3.16 F
3331 3803 0.460987 CAGGCCTAGGAACTTCTGCG 60.461 60.000 14.75 0.00 41.75 5.18 F
4093 4596 0.251073 ACGTATTTTGGGACGGAGGG 59.749 55.000 0.00 0.00 43.32 4.30 F
4094 4597 0.538118 CGTATTTTGGGACGGAGGGA 59.462 55.000 0.00 0.00 35.43 4.20 F
4095 4598 1.472728 CGTATTTTGGGACGGAGGGAG 60.473 57.143 0.00 0.00 35.43 4.30 F
4553 5082 2.093973 AGGCATTTCACAGGTCGTAGAG 60.094 50.000 0.00 0.00 36.95 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 2144 0.035630 CTTCCTTCCTCTGCCACCAG 60.036 60.000 0.00 0.00 40.54 4.00 R
2278 2718 0.179105 ACACCTGTTGCGTCGTAACA 60.179 50.000 24.29 24.29 35.94 2.41 R
2377 2818 2.677836 CGTCCACACCCATGTATGAAAG 59.322 50.000 0.70 0.00 36.72 2.62 R
3315 3787 0.037232 ACACGCAGAAGTTCCTAGGC 60.037 55.000 2.96 0.00 0.00 3.93 R
3391 3863 1.812571 CACTTCCAAAGCGCTAACCAT 59.187 47.619 12.05 0.00 0.00 3.55 R
4750 5279 2.856222 AGAGAAACAAAGGTGCAGGAG 58.144 47.619 0.00 0.00 0.00 3.69 R
5924 6467 1.351076 TGAGTTCCCTGCAGTCATCA 58.649 50.000 13.81 6.61 0.00 3.07 R
6133 6676 5.560724 AGCTGCCAATAGACTTGTTTTCTA 58.439 37.500 0.00 0.00 0.00 2.10 R
6359 6902 5.221244 GGAAAGCACCACAAGTTTAGTTGAT 60.221 40.000 4.40 0.00 0.00 2.57 R
6724 7292 2.930682 GTCTTCGAAGCACCATACCTTC 59.069 50.000 20.56 0.00 35.31 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.548031 GAATCTGGGGCACTGGATCA 59.452 55.000 0.00 0.00 0.00 2.92
135 136 0.036388 CACGGACCTGGTACATTGCT 60.036 55.000 10.24 0.00 38.20 3.91
204 206 6.249893 TGTCATCGTATTACGTTTTCTCTTCG 59.750 38.462 15.31 0.00 43.14 3.79
207 209 8.337532 TCATCGTATTACGTTTTCTCTTCGATA 58.662 33.333 15.31 0.00 43.14 2.92
208 210 9.114965 CATCGTATTACGTTTTCTCTTCGATAT 57.885 33.333 15.31 0.00 43.14 1.63
282 295 0.108585 TCGCAAAGTCCCTGCTCTTT 59.891 50.000 0.00 0.00 37.67 2.52
285 298 1.539157 CAAAGTCCCTGCTCTTTCCC 58.461 55.000 0.00 0.00 32.52 3.97
286 299 1.149101 AAAGTCCCTGCTCTTTCCCA 58.851 50.000 0.00 0.00 29.37 4.37
288 301 0.915364 AGTCCCTGCTCTTTCCCATC 59.085 55.000 0.00 0.00 0.00 3.51
289 302 0.915364 GTCCCTGCTCTTTCCCATCT 59.085 55.000 0.00 0.00 0.00 2.90
292 305 1.563410 CCCTGCTCTTTCCCATCTCTT 59.437 52.381 0.00 0.00 0.00 2.85
293 306 2.421248 CCCTGCTCTTTCCCATCTCTTC 60.421 54.545 0.00 0.00 0.00 2.87
294 307 2.421248 CCTGCTCTTTCCCATCTCTTCC 60.421 54.545 0.00 0.00 0.00 3.46
297 310 2.421248 GCTCTTTCCCATCTCTTCCCAG 60.421 54.545 0.00 0.00 0.00 4.45
298 311 1.561542 TCTTTCCCATCTCTTCCCAGC 59.438 52.381 0.00 0.00 0.00 4.85
299 312 1.283029 CTTTCCCATCTCTTCCCAGCA 59.717 52.381 0.00 0.00 0.00 4.41
467 497 9.604626 CACTTCATCTTTGAAACTTAGTTCATC 57.395 33.333 0.00 0.00 41.22 2.92
513 556 3.701205 AGGTTTCAAATTTGCATCCCC 57.299 42.857 13.54 8.34 0.00 4.81
514 557 2.978278 AGGTTTCAAATTTGCATCCCCA 59.022 40.909 13.54 0.00 0.00 4.96
518 561 1.274728 TCAAATTTGCATCCCCAACCG 59.725 47.619 13.54 0.00 0.00 4.44
604 656 2.620585 GCCTTCTTCTGTTGAAAGTGCT 59.379 45.455 0.00 0.00 0.00 4.40
626 678 0.978907 TTGGACCTCTAACCGGGTTC 59.021 55.000 17.19 0.09 35.77 3.62
632 684 1.200519 CTCTAACCGGGTTCCCATGA 58.799 55.000 17.19 7.37 0.00 3.07
636 688 0.182775 AACCGGGTTCCCATGATAGC 59.817 55.000 6.59 0.00 0.00 2.97
694 746 6.256643 TGATGATCAGATTTCAATCCCTCA 57.743 37.500 0.09 0.00 36.04 3.86
762 1182 5.812127 GGGACAATATTGTTTTGCATCTTCC 59.188 40.000 21.63 13.37 42.43 3.46
763 1183 5.812127 GGACAATATTGTTTTGCATCTTCCC 59.188 40.000 21.63 10.08 42.43 3.97
765 1185 5.248020 ACAATATTGTTTTGCATCTTCCCCA 59.752 36.000 15.47 0.00 38.47 4.96
768 1188 3.681593 TGTTTTGCATCTTCCCCAATG 57.318 42.857 0.00 0.00 0.00 2.82
783 1203 3.181449 CCCCAATGGTAATATCGACACCA 60.181 47.826 11.18 11.18 45.96 4.17
786 1206 4.878971 CCAATGGTAATATCGACACCAACA 59.121 41.667 12.41 0.00 45.09 3.33
801 1226 1.241929 AACAGGGAGTTGGGGAGGA 59.758 57.895 0.00 0.00 39.49 3.71
803 1228 1.081092 CAGGGAGTTGGGGAGGAGA 59.919 63.158 0.00 0.00 0.00 3.71
805 1230 1.081277 GGGAGTTGGGGAGGAGAGT 59.919 63.158 0.00 0.00 0.00 3.24
807 1232 1.268283 GGAGTTGGGGAGGAGAGTGG 61.268 65.000 0.00 0.00 0.00 4.00
827 1265 1.484653 GGGAAGGCAGTTTTGTTTGGT 59.515 47.619 0.00 0.00 0.00 3.67
906 1344 3.941188 CGATGCGGCCCCACCTAT 61.941 66.667 0.00 0.00 35.61 2.57
986 1424 1.152673 CCCTAGCCCCCAAATCAGC 60.153 63.158 0.00 0.00 0.00 4.26
990 1428 2.223464 TAGCCCCCAAATCAGCCCAC 62.223 60.000 0.00 0.00 0.00 4.61
1186 1624 2.832201 AGGTAGGTACTCGCGCCC 60.832 66.667 0.00 0.00 41.75 6.13
1321 1759 4.021925 GCCGACCACTCCAAGGCT 62.022 66.667 0.00 0.00 44.06 4.58
1423 1861 2.791927 GGCGAATTCTTGCCGGTC 59.208 61.111 1.90 0.00 42.22 4.79
1475 1913 3.666253 CGGTGGGTTTGGTTCGGC 61.666 66.667 0.00 0.00 0.00 5.54
1527 1966 2.040412 GGGGAACTGTCTGATTTGGAGT 59.960 50.000 0.00 0.00 0.00 3.85
1799 2239 0.458716 GTCGTCTAGTTGGCCAGCTC 60.459 60.000 26.87 11.04 0.00 4.09
1858 2298 7.615582 TTGAATTGATCATCTGTTGTCCTAC 57.384 36.000 0.00 0.00 38.03 3.18
1859 2299 6.115446 TGAATTGATCATCTGTTGTCCTACC 58.885 40.000 0.00 0.00 31.50 3.18
1860 2300 4.487714 TTGATCATCTGTTGTCCTACCC 57.512 45.455 0.00 0.00 0.00 3.69
1861 2301 3.449918 TGATCATCTGTTGTCCTACCCA 58.550 45.455 0.00 0.00 0.00 4.51
1866 2306 5.009631 TCATCTGTTGTCCTACCCAAATTG 58.990 41.667 0.00 0.00 0.00 2.32
1872 2312 8.164733 TCTGTTGTCCTACCCAAATTGTTATTA 58.835 33.333 0.00 0.00 0.00 0.98
1881 2321 5.923684 ACCCAAATTGTTATTAGTGTTTGCG 59.076 36.000 0.00 0.00 0.00 4.85
1884 2324 6.804295 CCAAATTGTTATTAGTGTTTGCGCTA 59.196 34.615 9.73 0.00 36.72 4.26
1900 2340 4.450976 TGCGCTATAACACATTCATTCCT 58.549 39.130 9.73 0.00 0.00 3.36
1902 2342 4.376413 GCGCTATAACACATTCATTCCTCG 60.376 45.833 0.00 0.00 0.00 4.63
1909 2349 3.253188 ACACATTCATTCCTCGTGTTTGG 59.747 43.478 0.00 0.00 37.53 3.28
1917 2357 2.422597 TCCTCGTGTTTGGCATAGTTG 58.577 47.619 0.00 0.00 0.00 3.16
1930 2370 3.568538 GCATAGTTGACAGGCTTGTTTG 58.431 45.455 1.80 0.00 37.76 2.93
1943 2383 6.407979 ACAGGCTTGTTTGAATTTGGTAACAT 60.408 34.615 0.00 0.00 40.19 2.71
2166 2606 6.069905 TCCAGGTACATCTTGGTTGCTATTTA 60.070 38.462 0.00 0.00 42.88 1.40
2278 2718 3.482436 TGGAACAAAGGATAAACGTGCT 58.518 40.909 0.00 0.00 31.92 4.40
2304 2744 3.998341 ACGACGCAACAGGTGTTTATTAT 59.002 39.130 0.00 0.00 41.19 1.28
2370 2811 6.936279 TGGATTTGCGTTTTGGGATAAAATA 58.064 32.000 0.00 0.00 0.00 1.40
2377 2818 7.030768 TGCGTTTTGGGATAAAATAGCTAAAC 58.969 34.615 0.00 0.00 31.64 2.01
2397 2838 3.686016 ACTTTCATACATGGGTGTGGAC 58.314 45.455 0.00 0.00 39.39 4.02
2452 2893 9.137459 AGCTATAAGTGAACTGTATCTGTATGT 57.863 33.333 0.00 0.00 0.00 2.29
2453 2894 9.186323 GCTATAAGTGAACTGTATCTGTATGTG 57.814 37.037 0.00 0.00 0.00 3.21
2594 3061 7.098477 TGTTTCATGATTTTCTGGCTATTTGG 58.902 34.615 0.00 0.00 0.00 3.28
2712 3179 4.819769 TCAAGGTGCCAGCAAATAAAATC 58.180 39.130 0.00 0.00 0.00 2.17
2774 3241 6.127897 GGAAACTTCTGGTAGGTGATCAATTG 60.128 42.308 0.00 0.00 0.00 2.32
2785 3252 8.190784 GGTAGGTGATCAATTGATTTTTGTAGG 58.809 37.037 21.57 0.00 34.37 3.18
2830 3297 7.972277 TCCTAAGTGATACTTTAGCAACTAACG 59.028 37.037 0.00 0.00 39.51 3.18
3068 3539 7.180408 ACACTACCTCACCACTATCAGTTATTT 59.820 37.037 0.00 0.00 0.00 1.40
3192 3664 6.760770 TGCTTTAACAAACTGAGAAAATTGGG 59.239 34.615 0.00 0.00 0.00 4.12
3224 3696 6.303839 TGTTTACCTGCATTTCTTTAGAGGT 58.696 36.000 0.00 0.00 37.57 3.85
3314 3786 5.086104 ACTACTATGGTTTGCAGGTACAG 57.914 43.478 0.00 0.00 0.00 2.74
3315 3787 3.350219 ACTATGGTTTGCAGGTACAGG 57.650 47.619 0.00 0.00 0.00 4.00
3331 3803 0.460987 CAGGCCTAGGAACTTCTGCG 60.461 60.000 14.75 0.00 41.75 5.18
3348 3820 2.679837 CTGCGTGTGCTCCAGAATTTAT 59.320 45.455 0.00 0.00 43.34 1.40
3379 3851 9.612620 CTGTTATTTGTGAACCTTATTGAGTTC 57.387 33.333 0.00 0.00 42.20 3.01
3663 4136 5.441718 TTGATATGGCTCTGAGGAACTTT 57.558 39.130 6.83 0.00 41.55 2.66
3963 4466 2.884639 ACATTGGTGGTTTTCTTCTCCG 59.115 45.455 0.00 0.00 0.00 4.63
4025 4528 5.486526 AGTAAGTATATACTCCCTCCGTCG 58.513 45.833 15.72 0.00 34.99 5.12
4026 4529 2.709213 AGTATATACTCCCTCCGTCGC 58.291 52.381 9.71 0.00 0.00 5.19
4027 4530 2.039480 AGTATATACTCCCTCCGTCGCA 59.961 50.000 9.71 0.00 0.00 5.10
4028 4531 1.991121 ATATACTCCCTCCGTCGCAA 58.009 50.000 0.00 0.00 0.00 4.85
4029 4532 1.766494 TATACTCCCTCCGTCGCAAA 58.234 50.000 0.00 0.00 0.00 3.68
4030 4533 0.899720 ATACTCCCTCCGTCGCAAAA 59.100 50.000 0.00 0.00 0.00 2.44
4031 4534 0.899720 TACTCCCTCCGTCGCAAAAT 59.100 50.000 0.00 0.00 0.00 1.82
4032 4535 0.899720 ACTCCCTCCGTCGCAAAATA 59.100 50.000 0.00 0.00 0.00 1.40
4033 4536 1.276989 ACTCCCTCCGTCGCAAAATAA 59.723 47.619 0.00 0.00 0.00 1.40
4034 4537 1.933853 CTCCCTCCGTCGCAAAATAAG 59.066 52.381 0.00 0.00 0.00 1.73
4035 4538 1.276989 TCCCTCCGTCGCAAAATAAGT 59.723 47.619 0.00 0.00 0.00 2.24
4036 4539 1.396996 CCCTCCGTCGCAAAATAAGTG 59.603 52.381 0.00 0.00 0.00 3.16
4037 4540 2.343101 CCTCCGTCGCAAAATAAGTGA 58.657 47.619 0.00 0.00 0.00 3.41
4038 4541 2.093783 CCTCCGTCGCAAAATAAGTGAC 59.906 50.000 0.00 0.00 41.73 3.67
4039 4542 2.993899 CTCCGTCGCAAAATAAGTGACT 59.006 45.455 0.00 0.00 42.68 3.41
4040 4543 2.991190 TCCGTCGCAAAATAAGTGACTC 59.009 45.455 0.00 0.00 42.68 3.36
4041 4544 2.734606 CCGTCGCAAAATAAGTGACTCA 59.265 45.455 0.00 0.00 42.68 3.41
4042 4545 3.185594 CCGTCGCAAAATAAGTGACTCAA 59.814 43.478 0.00 0.00 42.68 3.02
4043 4546 4.141680 CGTCGCAAAATAAGTGACTCAAC 58.858 43.478 0.00 0.00 42.68 3.18
4044 4547 4.084537 CGTCGCAAAATAAGTGACTCAACT 60.085 41.667 0.00 0.00 42.68 3.16
4045 4548 5.558273 CGTCGCAAAATAAGTGACTCAACTT 60.558 40.000 0.00 0.00 42.68 2.66
4046 4549 6.199393 GTCGCAAAATAAGTGACTCAACTTT 58.801 36.000 0.00 0.00 41.86 2.66
4047 4550 6.140737 GTCGCAAAATAAGTGACTCAACTTTG 59.859 38.462 0.00 0.00 41.86 2.77
4048 4551 5.971202 CGCAAAATAAGTGACTCAACTTTGT 59.029 36.000 9.56 0.00 40.77 2.83
4049 4552 7.011576 TCGCAAAATAAGTGACTCAACTTTGTA 59.988 33.333 9.56 0.44 40.77 2.41
4050 4553 7.111593 CGCAAAATAAGTGACTCAACTTTGTAC 59.888 37.037 9.56 0.00 40.77 2.90
4051 4554 8.129211 GCAAAATAAGTGACTCAACTTTGTACT 58.871 33.333 0.00 0.00 40.77 2.73
4057 4560 8.788325 AAGTGACTCAACTTTGTACTAGTTTT 57.212 30.769 0.00 1.05 37.05 2.43
4058 4561 9.880157 AAGTGACTCAACTTTGTACTAGTTTTA 57.120 29.630 0.00 3.52 37.05 1.52
4059 4562 9.530633 AGTGACTCAACTTTGTACTAGTTTTAG 57.469 33.333 0.00 11.99 33.73 1.85
4060 4563 9.310716 GTGACTCAACTTTGTACTAGTTTTAGT 57.689 33.333 0.00 17.00 42.66 2.24
4076 4579 9.327529 CTAGTTTTAGTACTAAGTTGAGTCACG 57.672 37.037 14.73 0.00 30.63 4.35
4077 4580 7.710896 AGTTTTAGTACTAAGTTGAGTCACGT 58.289 34.615 14.73 0.00 0.00 4.49
4078 4581 8.840321 AGTTTTAGTACTAAGTTGAGTCACGTA 58.160 33.333 14.73 0.00 0.00 3.57
4079 4582 9.617975 GTTTTAGTACTAAGTTGAGTCACGTAT 57.382 33.333 14.73 0.00 0.00 3.06
4083 4586 8.516811 AGTACTAAGTTGAGTCACGTATTTTG 57.483 34.615 0.00 0.00 0.00 2.44
4084 4587 6.780706 ACTAAGTTGAGTCACGTATTTTGG 57.219 37.500 0.00 0.00 0.00 3.28
4085 4588 5.699458 ACTAAGTTGAGTCACGTATTTTGGG 59.301 40.000 0.00 0.00 0.00 4.12
4086 4589 4.345859 AGTTGAGTCACGTATTTTGGGA 57.654 40.909 0.00 0.00 0.00 4.37
4087 4590 4.062991 AGTTGAGTCACGTATTTTGGGAC 58.937 43.478 0.00 0.00 0.00 4.46
4088 4591 2.679450 TGAGTCACGTATTTTGGGACG 58.321 47.619 0.00 0.00 44.57 4.79
4089 4592 1.997606 GAGTCACGTATTTTGGGACGG 59.002 52.381 0.00 0.00 43.32 4.79
4090 4593 1.619827 AGTCACGTATTTTGGGACGGA 59.380 47.619 0.00 0.00 43.32 4.69
4091 4594 1.997606 GTCACGTATTTTGGGACGGAG 59.002 52.381 0.00 0.00 43.32 4.63
4092 4595 1.066716 TCACGTATTTTGGGACGGAGG 60.067 52.381 0.00 0.00 43.32 4.30
4093 4596 0.251073 ACGTATTTTGGGACGGAGGG 59.749 55.000 0.00 0.00 43.32 4.30
4094 4597 0.538118 CGTATTTTGGGACGGAGGGA 59.462 55.000 0.00 0.00 35.43 4.20
4095 4598 1.472728 CGTATTTTGGGACGGAGGGAG 60.473 57.143 0.00 0.00 35.43 4.30
4155 4658 5.720202 TGACATCAACAGTAGTACATCCAC 58.280 41.667 2.52 0.00 0.00 4.02
4225 4748 8.551205 CACTTGCTAAATCGAATATTTCTGCTA 58.449 33.333 0.00 0.00 0.00 3.49
4467 4994 5.416271 ACCGTTACTATTTCATGAGGTGT 57.584 39.130 0.00 0.00 0.00 4.16
4553 5082 2.093973 AGGCATTTCACAGGTCGTAGAG 60.094 50.000 0.00 0.00 36.95 2.43
4707 5236 4.335594 AGTCTGTGAAGGTTTGCTACAAAC 59.664 41.667 13.46 13.46 0.00 2.93
4750 5279 7.500559 AGAAAATGTTCCTTCTCATATGCCTAC 59.499 37.037 0.00 0.00 33.92 3.18
4751 5280 6.506538 AATGTTCCTTCTCATATGCCTACT 57.493 37.500 0.00 0.00 0.00 2.57
4915 5445 7.555087 TGATTCCACTTGTCAAGAAAACAAAT 58.445 30.769 19.53 9.12 36.27 2.32
4990 5520 5.886960 ATGAAGTTGCTGAGATTTACCAC 57.113 39.130 0.00 0.00 0.00 4.16
5044 5574 3.684788 CCGTCCCAAAATAAGTGTCTCAG 59.315 47.826 0.00 0.00 0.00 3.35
5103 5633 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
5122 5663 3.804325 CGGAAGGAGTATATTGCAGTGTG 59.196 47.826 0.00 0.00 0.00 3.82
5128 5669 7.792374 AGGAGTATATTGCAGTGTGTATTTG 57.208 36.000 0.00 0.00 0.00 2.32
5480 6022 3.210227 GCTCCCAGAATTCTTTCTAGCC 58.790 50.000 4.86 0.00 40.28 3.93
5702 6245 2.835764 AGCATGAAAGGAGGTTACCGTA 59.164 45.455 0.00 0.00 34.73 4.02
5860 6403 3.587797 TTTAGAGGAGTAACACTGCCG 57.412 47.619 0.00 0.00 37.25 5.69
5878 6421 7.352739 CACTGCCGTGTATTAATTCTTATTCC 58.647 38.462 0.00 0.00 36.39 3.01
5879 6422 7.226720 CACTGCCGTGTATTAATTCTTATTCCT 59.773 37.037 0.00 0.00 36.39 3.36
5880 6423 7.773690 ACTGCCGTGTATTAATTCTTATTCCTT 59.226 33.333 0.00 0.00 0.00 3.36
5881 6424 8.514330 TGCCGTGTATTAATTCTTATTCCTTT 57.486 30.769 0.00 0.00 0.00 3.11
5882 6425 8.962679 TGCCGTGTATTAATTCTTATTCCTTTT 58.037 29.630 0.00 0.00 0.00 2.27
5883 6426 9.797556 GCCGTGTATTAATTCTTATTCCTTTTT 57.202 29.630 0.00 0.00 0.00 1.94
5901 6444 9.793259 TTCCTTTTTGTTGAATCTAGTATGACT 57.207 29.630 0.00 0.00 0.00 3.41
5902 6445 9.219603 TCCTTTTTGTTGAATCTAGTATGACTG 57.780 33.333 0.00 0.00 0.00 3.51
6331 6874 3.059634 GACTAGTGAGTCGACTGATGC 57.940 52.381 25.58 9.08 42.73 3.91
6494 7058 5.816777 GCCACTACGGTGTTTGGTTAATATA 59.183 40.000 0.00 0.00 41.53 0.86
6661 7229 5.597813 ACACTTGATTGCTAAGTTTCTCG 57.402 39.130 0.00 0.00 36.29 4.04
6666 7234 4.507710 TGATTGCTAAGTTTCTCGCTGAT 58.492 39.130 0.00 0.00 0.00 2.90
6674 7242 3.321497 AGTTTCTCGCTGATGTCAGTTC 58.679 45.455 11.35 0.00 45.45 3.01
6724 7292 2.118313 TTGAGGATGTGACATGGCTG 57.882 50.000 1.23 0.00 0.00 4.85
6849 7417 3.697542 TGGATCCATGAATCAGCAAACTG 59.302 43.478 11.44 0.00 45.95 3.16
6860 7428 2.972505 CAAACTGACCACGCGGCT 60.973 61.111 12.47 0.00 34.57 5.52
6976 7545 3.001838 CGTGCCGCAATAAAGCTTGTATA 59.998 43.478 0.00 0.00 0.00 1.47
6980 7549 4.791734 GCCGCAATAAAGCTTGTATAACCC 60.792 45.833 0.00 0.00 0.00 4.11
7024 7595 7.438160 TGAAATCGAGATATAAAATCGTGCTGT 59.562 33.333 0.00 0.00 37.69 4.40
7042 7613 1.001048 TGTGTTGGTTACCTCGACGAG 60.001 52.381 18.08 18.08 0.00 4.18
7066 7637 2.749076 TGAGGTTTTGCTGGATGATTCG 59.251 45.455 0.00 0.00 0.00 3.34
7067 7638 3.009723 GAGGTTTTGCTGGATGATTCGA 58.990 45.455 0.00 0.00 0.00 3.71
7100 7671 7.326547 CCCATCATTTTGTTTTGCATTTTAAGC 59.673 33.333 0.00 0.00 0.00 3.09
7121 7693 3.452474 CTTCCTGCTTATCTCGGTTCTG 58.548 50.000 0.00 0.00 0.00 3.02
7130 7702 5.333875 GCTTATCTCGGTTCTGTTTTTCGTT 60.334 40.000 0.00 0.00 0.00 3.85
7150 7722 6.077197 TCGTTGTTTTATTTCGATTCTGCTG 58.923 36.000 0.00 0.00 0.00 4.41
7155 7727 6.206634 TGTTTTATTTCGATTCTGCTGGACTT 59.793 34.615 0.00 0.00 0.00 3.01
7158 7730 0.976641 TCGATTCTGCTGGACTTGGT 59.023 50.000 0.00 0.00 0.00 3.67
7159 7731 1.066858 TCGATTCTGCTGGACTTGGTC 60.067 52.381 0.00 0.00 0.00 4.02
7189 7761 1.371558 GCCTGGACCTCTGAAACGT 59.628 57.895 0.00 0.00 0.00 3.99
7203 7775 1.535462 GAAACGTTCCATGGTCTGGTG 59.465 52.381 12.58 0.00 46.08 4.17
7250 7850 1.369625 GCCCTGTTTGATACACGAGG 58.630 55.000 0.00 0.00 32.10 4.63
7273 7873 5.476945 GGAAAGGACATTCCATGTACACTTT 59.523 40.000 0.00 0.00 46.80 2.66
7287 7887 9.383519 CCATGTACACTTTCTGTATACAATTCT 57.616 33.333 7.06 0.00 41.24 2.40
7308 7909 6.732896 TCTTATACTCCCTCTGATCCAAAC 57.267 41.667 0.00 0.00 0.00 2.93
7317 7918 3.386402 CCTCTGATCCAAACTACTCCCTC 59.614 52.174 0.00 0.00 0.00 4.30
7320 7921 4.017037 TCTGATCCAAACTACTCCCTCTCT 60.017 45.833 0.00 0.00 0.00 3.10
7332 7933 7.061688 ACTACTCCCTCTCTCATAATAAACGT 58.938 38.462 0.00 0.00 0.00 3.99
7339 7940 9.765795 CCCTCTCTCATAATAAACGTTCTTATT 57.234 33.333 0.00 5.87 35.94 1.40
7378 7979 9.712305 AAATGTTCTTATATTATGAGACGGAGG 57.288 33.333 0.00 0.00 0.00 4.30
7379 7980 7.228314 TGTTCTTATATTATGAGACGGAGGG 57.772 40.000 0.00 0.00 0.00 4.30
7380 7981 7.008332 TGTTCTTATATTATGAGACGGAGGGA 58.992 38.462 0.00 0.00 0.00 4.20
7381 7982 7.176865 TGTTCTTATATTATGAGACGGAGGGAG 59.823 40.741 0.00 0.00 0.00 4.30
7382 7983 6.791371 TCTTATATTATGAGACGGAGGGAGT 58.209 40.000 0.00 0.00 0.00 3.85
7383 7984 7.925622 TCTTATATTATGAGACGGAGGGAGTA 58.074 38.462 0.00 0.00 0.00 2.59
7384 7985 8.558312 TCTTATATTATGAGACGGAGGGAGTAT 58.442 37.037 0.00 0.00 0.00 2.12
7385 7986 8.521170 TTATATTATGAGACGGAGGGAGTATG 57.479 38.462 0.00 0.00 0.00 2.39
7386 7987 1.333177 ATGAGACGGAGGGAGTATGC 58.667 55.000 0.00 0.00 0.00 3.14
7387 7988 0.259065 TGAGACGGAGGGAGTATGCT 59.741 55.000 0.00 0.00 0.00 3.79
7388 7989 0.955905 GAGACGGAGGGAGTATGCTC 59.044 60.000 1.56 1.56 40.93 4.26
7389 7990 0.553819 AGACGGAGGGAGTATGCTCT 59.446 55.000 10.82 0.00 41.38 4.09
7390 7991 1.063567 AGACGGAGGGAGTATGCTCTT 60.064 52.381 10.82 0.00 41.38 2.85
7391 7992 2.175069 AGACGGAGGGAGTATGCTCTTA 59.825 50.000 10.82 0.00 41.38 2.10
7392 7993 3.158676 GACGGAGGGAGTATGCTCTTAT 58.841 50.000 10.82 0.00 41.38 1.73
7393 7994 4.043059 AGACGGAGGGAGTATGCTCTTATA 59.957 45.833 10.82 0.00 41.38 0.98
7394 7995 4.936802 ACGGAGGGAGTATGCTCTTATAT 58.063 43.478 10.82 0.00 41.38 0.86
7395 7996 5.334421 ACGGAGGGAGTATGCTCTTATATT 58.666 41.667 10.82 0.00 41.38 1.28
7396 7997 6.491383 ACGGAGGGAGTATGCTCTTATATTA 58.509 40.000 10.82 0.00 41.38 0.98
7397 7998 7.126733 ACGGAGGGAGTATGCTCTTATATTAT 58.873 38.462 10.82 0.00 41.38 1.28
7398 7999 7.068839 ACGGAGGGAGTATGCTCTTATATTATG 59.931 40.741 10.82 0.00 41.38 1.90
7399 8000 7.285629 CGGAGGGAGTATGCTCTTATATTATGA 59.714 40.741 10.82 0.00 41.38 2.15
7400 8001 8.637986 GGAGGGAGTATGCTCTTATATTATGAG 58.362 40.741 10.82 0.00 41.38 2.90
7401 8002 9.415008 GAGGGAGTATGCTCTTATATTATGAGA 57.585 37.037 10.82 0.00 41.38 3.27
7402 8003 9.196139 AGGGAGTATGCTCTTATATTATGAGAC 57.804 37.037 10.82 0.00 41.38 3.36
7403 8004 9.196139 GGGAGTATGCTCTTATATTATGAGACT 57.804 37.037 10.82 0.00 41.38 3.24
7416 8017 2.350057 TGAGACTATGAGACGGAGGG 57.650 55.000 0.00 0.00 0.00 4.30
7430 8031 1.802880 CGGAGGGAGTAATTGACGCAG 60.803 57.143 0.00 0.00 0.00 5.18
7431 8032 1.291132 GAGGGAGTAATTGACGCAGC 58.709 55.000 0.00 0.00 0.00 5.25
7444 8045 0.817634 ACGCAGCAGCTTTGGTACAA 60.818 50.000 0.00 0.00 41.24 2.41
7445 8046 0.385974 CGCAGCAGCTTTGGTACAAC 60.386 55.000 0.00 0.00 41.24 3.32
7446 8047 0.667993 GCAGCAGCTTTGGTACAACA 59.332 50.000 0.00 0.00 40.44 3.33
7447 8048 1.066908 GCAGCAGCTTTGGTACAACAA 59.933 47.619 0.00 0.00 40.44 2.83
7477 8078 9.072375 TGTACTGTGTCAATTAATTTGGATTGA 57.928 29.630 0.00 7.21 39.30 2.57
7478 8079 9.906660 GTACTGTGTCAATTAATTTGGATTGAA 57.093 29.630 0.00 3.39 42.15 2.69
7480 8081 8.090214 ACTGTGTCAATTAATTTGGATTGAAGG 58.910 33.333 0.00 6.62 42.15 3.46
7490 8091 7.797121 AATTTGGATTGAAGGGAGTACATTT 57.203 32.000 0.00 0.00 0.00 2.32
7503 8104 4.141482 GGAGTACATTTGGATAGGAGCCAA 60.141 45.833 0.00 0.00 43.31 4.52
7511 8112 3.454858 TGGATAGGAGCCAAGAACTCTT 58.545 45.455 0.00 0.00 36.45 2.85
7524 8125 7.887495 AGCCAAGAACTCTTCTAGATTTTCATT 59.113 33.333 0.00 0.00 39.61 2.57
7525 8126 8.518702 GCCAAGAACTCTTCTAGATTTTCATTT 58.481 33.333 0.00 0.00 39.61 2.32
7548 8149 8.845413 TTTTGTCAATTAATTTGGATTGGAGG 57.155 30.769 0.00 0.00 35.92 4.30
7549 8150 6.543430 TGTCAATTAATTTGGATTGGAGGG 57.457 37.500 0.00 0.00 35.92 4.30
7550 8151 6.259893 TGTCAATTAATTTGGATTGGAGGGA 58.740 36.000 0.00 0.00 35.92 4.20
7551 8152 6.380846 TGTCAATTAATTTGGATTGGAGGGAG 59.619 38.462 0.00 0.00 35.92 4.30
7552 8153 6.381133 GTCAATTAATTTGGATTGGAGGGAGT 59.619 38.462 0.00 0.00 35.92 3.85
7553 8154 7.559897 GTCAATTAATTTGGATTGGAGGGAGTA 59.440 37.037 0.00 0.00 35.92 2.59
7554 8155 7.559897 TCAATTAATTTGGATTGGAGGGAGTAC 59.440 37.037 0.00 0.00 35.92 2.73
7555 8156 4.946160 AATTTGGATTGGAGGGAGTACA 57.054 40.909 0.00 0.00 0.00 2.90
7556 8157 5.472301 AATTTGGATTGGAGGGAGTACAT 57.528 39.130 0.00 0.00 0.00 2.29
7557 8158 4.946160 TTTGGATTGGAGGGAGTACATT 57.054 40.909 0.00 0.00 0.00 2.71
7558 8159 4.503714 TTGGATTGGAGGGAGTACATTC 57.496 45.455 0.00 0.00 0.00 2.67
7559 8160 2.777692 TGGATTGGAGGGAGTACATTCC 59.222 50.000 0.00 0.00 35.99 3.01
7560 8161 2.777692 GGATTGGAGGGAGTACATTCCA 59.222 50.000 3.75 4.01 39.09 3.53
7562 8163 3.713826 TTGGAGGGAGTACATTCCAAC 57.286 47.619 13.18 3.52 42.96 3.77
7563 8164 2.626785 TGGAGGGAGTACATTCCAACA 58.373 47.619 3.75 0.00 39.09 3.33
7564 8165 2.983192 TGGAGGGAGTACATTCCAACAA 59.017 45.455 3.75 0.00 39.09 2.83
7565 8166 3.244770 TGGAGGGAGTACATTCCAACAAC 60.245 47.826 3.75 0.00 39.09 3.32
7566 8167 3.009143 GGAGGGAGTACATTCCAACAACT 59.991 47.826 3.75 0.00 39.09 3.16
7567 8168 4.254492 GAGGGAGTACATTCCAACAACTC 58.746 47.826 3.75 0.00 39.09 3.01
7568 8169 3.910627 AGGGAGTACATTCCAACAACTCT 59.089 43.478 3.75 0.00 39.09 3.24
7569 8170 4.020128 AGGGAGTACATTCCAACAACTCTC 60.020 45.833 3.75 0.00 39.09 3.20
7570 8171 4.254492 GGAGTACATTCCAACAACTCTCC 58.746 47.826 0.00 0.00 37.36 3.71
7571 8172 4.020128 GGAGTACATTCCAACAACTCTCCT 60.020 45.833 0.00 0.00 37.36 3.69
7572 8173 5.187186 GGAGTACATTCCAACAACTCTCCTA 59.813 44.000 0.00 0.00 37.36 2.94
7573 8174 6.127026 GGAGTACATTCCAACAACTCTCCTAT 60.127 42.308 0.00 0.00 37.36 2.57
7574 8175 7.069578 GGAGTACATTCCAACAACTCTCCTATA 59.930 40.741 0.00 0.00 37.36 1.31
7575 8176 8.554490 AGTACATTCCAACAACTCTCCTATAT 57.446 34.615 0.00 0.00 0.00 0.86
7576 8177 8.993424 AGTACATTCCAACAACTCTCCTATATT 58.007 33.333 0.00 0.00 0.00 1.28
7577 8178 9.614792 GTACATTCCAACAACTCTCCTATATTT 57.385 33.333 0.00 0.00 0.00 1.40
7579 8180 9.178758 ACATTCCAACAACTCTCCTATATTTTC 57.821 33.333 0.00 0.00 0.00 2.29
7580 8181 9.177608 CATTCCAACAACTCTCCTATATTTTCA 57.822 33.333 0.00 0.00 0.00 2.69
7593 8194 6.126863 CTATATTTTCATAGGACCCTGCCA 57.873 41.667 0.00 0.00 0.00 4.92
7637 8238 5.180117 GCTCTGTTTGACGCATATATTCCAT 59.820 40.000 0.00 0.00 0.00 3.41
7638 8239 6.544038 TCTGTTTGACGCATATATTCCATG 57.456 37.500 0.00 0.00 0.00 3.66
7639 8240 6.054941 TCTGTTTGACGCATATATTCCATGT 58.945 36.000 0.00 0.00 0.00 3.21
7640 8241 6.542005 TCTGTTTGACGCATATATTCCATGTT 59.458 34.615 0.00 0.00 0.00 2.71
7641 8242 7.066887 TCTGTTTGACGCATATATTCCATGTTT 59.933 33.333 0.00 0.00 0.00 2.83
7642 8243 7.192913 TGTTTGACGCATATATTCCATGTTTC 58.807 34.615 0.00 0.00 0.00 2.78
7643 8244 5.590104 TGACGCATATATTCCATGTTTCG 57.410 39.130 0.00 0.00 0.00 3.46
7644 8245 5.053811 TGACGCATATATTCCATGTTTCGT 58.946 37.500 0.00 0.00 0.00 3.85
7645 8246 6.217294 TGACGCATATATTCCATGTTTCGTA 58.783 36.000 0.00 0.00 0.00 3.43
7646 8247 6.144886 TGACGCATATATTCCATGTTTCGTAC 59.855 38.462 0.00 0.00 0.00 3.67
7647 8248 5.118050 ACGCATATATTCCATGTTTCGTACG 59.882 40.000 9.53 9.53 0.00 3.67
7648 8249 5.444087 CGCATATATTCCATGTTTCGTACGG 60.444 44.000 16.52 0.00 0.00 4.02
7649 8250 5.636121 GCATATATTCCATGTTTCGTACGGA 59.364 40.000 16.52 2.84 0.00 4.69
7650 8251 6.183360 GCATATATTCCATGTTTCGTACGGAG 60.183 42.308 16.52 0.00 0.00 4.63
7651 8252 3.880047 ATTCCATGTTTCGTACGGAGA 57.120 42.857 16.52 3.60 0.00 3.71
7652 8253 3.663995 TTCCATGTTTCGTACGGAGAA 57.336 42.857 16.52 3.12 0.00 2.87
7653 8254 2.950433 TCCATGTTTCGTACGGAGAAC 58.050 47.619 16.52 17.02 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.629398 GCAGGAGTAGCATAACAGCAATT 59.371 43.478 0.00 0.00 36.85 2.32
135 136 5.361285 TCAAAAAGTTTCTCCCCGAAAATCA 59.639 36.000 0.00 0.00 42.87 2.57
282 295 1.274703 GGTGCTGGGAAGAGATGGGA 61.275 60.000 0.00 0.00 0.00 4.37
285 298 2.114616 ACTAGGTGCTGGGAAGAGATG 58.885 52.381 0.00 0.00 0.00 2.90
286 299 2.114616 CACTAGGTGCTGGGAAGAGAT 58.885 52.381 0.00 0.00 0.00 2.75
288 301 0.539051 CCACTAGGTGCTGGGAAGAG 59.461 60.000 0.00 0.00 31.34 2.85
289 302 0.116342 TCCACTAGGTGCTGGGAAGA 59.884 55.000 0.00 0.00 35.89 2.87
292 305 0.252696 ATGTCCACTAGGTGCTGGGA 60.253 55.000 0.00 0.00 35.89 4.37
293 306 0.620556 AATGTCCACTAGGTGCTGGG 59.379 55.000 0.00 0.00 35.89 4.45
294 307 1.003580 ACAATGTCCACTAGGTGCTGG 59.996 52.381 0.00 0.00 35.89 4.85
297 310 3.058224 GTCAAACAATGTCCACTAGGTGC 60.058 47.826 0.00 0.00 35.89 5.01
298 311 4.214119 CAGTCAAACAATGTCCACTAGGTG 59.786 45.833 0.00 0.00 35.89 4.00
299 312 4.141482 ACAGTCAAACAATGTCCACTAGGT 60.141 41.667 0.00 0.00 35.89 3.08
513 556 2.631428 CACACAAGGACGCGGTTG 59.369 61.111 12.47 13.64 0.00 3.77
514 557 3.276846 GCACACAAGGACGCGGTT 61.277 61.111 12.47 0.00 0.00 4.44
518 561 4.077188 GCGAGCACACAAGGACGC 62.077 66.667 0.00 0.00 39.33 5.19
604 656 0.688487 CCCGGTTAGAGGTCCAACAA 59.312 55.000 0.00 0.00 0.00 2.83
626 678 7.979537 CCATTAATCATTTGATGCTATCATGGG 59.020 37.037 0.00 0.00 39.39 4.00
694 746 1.670811 CAAATGCCGGTTTATCGCTCT 59.329 47.619 1.90 0.00 0.00 4.09
762 1182 4.079980 TGGTGTCGATATTACCATTGGG 57.920 45.455 7.78 0.00 39.43 4.12
763 1183 4.878971 TGTTGGTGTCGATATTACCATTGG 59.121 41.667 12.50 0.00 43.45 3.16
765 1185 5.123227 CCTGTTGGTGTCGATATTACCATT 58.877 41.667 12.50 0.00 43.45 3.16
768 1188 3.133362 TCCCTGTTGGTGTCGATATTACC 59.867 47.826 0.00 0.00 34.77 2.85
783 1203 0.842467 CTCCTCCCCAACTCCCTGTT 60.842 60.000 0.00 0.00 39.92 3.16
786 1206 1.394151 CTCTCCTCCCCAACTCCCT 59.606 63.158 0.00 0.00 0.00 4.20
801 1226 0.853530 AAAACTGCCTTCCCCACTCT 59.146 50.000 0.00 0.00 0.00 3.24
803 1228 0.261696 ACAAAACTGCCTTCCCCACT 59.738 50.000 0.00 0.00 0.00 4.00
805 1230 1.484240 CAAACAAAACTGCCTTCCCCA 59.516 47.619 0.00 0.00 0.00 4.96
807 1232 1.484653 ACCAAACAAAACTGCCTTCCC 59.515 47.619 0.00 0.00 0.00 3.97
827 1265 3.638160 GGCCTAGATCAATTGAATGGCAA 59.362 43.478 28.61 9.80 40.72 4.52
906 1344 2.351244 CCGCTGGCTGTACCTCTGA 61.351 63.158 0.00 0.00 40.22 3.27
1408 1846 0.248215 GCATGACCGGCAAGAATTCG 60.248 55.000 0.00 0.00 0.00 3.34
1475 1913 1.280746 CACAAGACAAGCAGCACCG 59.719 57.895 0.00 0.00 0.00 4.94
1483 1921 3.996150 AATTCAGCCACACAAGACAAG 57.004 42.857 0.00 0.00 0.00 3.16
1488 1926 1.001181 CCCCAAATTCAGCCACACAAG 59.999 52.381 0.00 0.00 0.00 3.16
1527 1966 3.005684 CACCTCCTGCAAGCAAATAAACA 59.994 43.478 0.00 0.00 0.00 2.83
1566 2006 5.354234 TCTGTGACCAAGAACTTGAAGTTTC 59.646 40.000 12.37 5.94 42.93 2.78
1609 2049 3.206150 CCTGATGTATTTCTGAACCCCG 58.794 50.000 0.00 0.00 0.00 5.73
1704 2144 0.035630 CTTCCTTCCTCTGCCACCAG 60.036 60.000 0.00 0.00 40.54 4.00
1799 2239 1.681166 CCTCAGGAACTTCCCAGCATG 60.681 57.143 4.01 0.00 37.19 4.06
1858 2298 5.164002 GCGCAAACACTAATAACAATTTGGG 60.164 40.000 0.30 7.08 40.76 4.12
1859 2299 5.633182 AGCGCAAACACTAATAACAATTTGG 59.367 36.000 11.47 0.00 0.00 3.28
1860 2300 6.689178 AGCGCAAACACTAATAACAATTTG 57.311 33.333 11.47 0.00 0.00 2.32
1881 2321 5.523916 ACACGAGGAATGAATGTGTTATAGC 59.476 40.000 0.00 0.00 40.63 2.97
1900 2340 2.805671 CTGTCAACTATGCCAAACACGA 59.194 45.455 0.00 0.00 0.00 4.35
1902 2342 2.351738 GCCTGTCAACTATGCCAAACAC 60.352 50.000 0.00 0.00 0.00 3.32
1909 2349 3.253188 TCAAACAAGCCTGTCAACTATGC 59.747 43.478 0.00 0.00 33.45 3.14
1917 2357 4.058721 ACCAAATTCAAACAAGCCTGTC 57.941 40.909 0.00 0.00 33.45 3.51
1930 2370 8.893727 AGCTACATTACTCATGTTACCAAATTC 58.106 33.333 0.00 0.00 44.40 2.17
1943 2383 8.534954 AGGAGTTGTTATAGCTACATTACTCA 57.465 34.615 16.36 1.42 36.09 3.41
2166 2606 5.386060 ACTGAATGATGCCATCAATGAGAT 58.614 37.500 14.92 0.00 43.50 2.75
2278 2718 0.179105 ACACCTGTTGCGTCGTAACA 60.179 50.000 24.29 24.29 35.94 2.41
2304 2744 7.733773 TTCAGAGAGATGGTTTACATAGGAA 57.266 36.000 0.00 0.00 40.72 3.36
2344 2784 3.525268 ATCCCAAAACGCAAATCCATC 57.475 42.857 0.00 0.00 0.00 3.51
2370 2811 5.415701 CACACCCATGTATGAAAGTTTAGCT 59.584 40.000 0.00 0.00 36.72 3.32
2377 2818 2.677836 CGTCCACACCCATGTATGAAAG 59.322 50.000 0.70 0.00 36.72 2.62
2496 2963 9.776158 AACGAATGCATATTAAATTTTACACGA 57.224 25.926 0.00 0.00 0.00 4.35
2785 3252 5.736951 AGGACAGCTATATTCCAGTGATC 57.263 43.478 0.00 0.00 0.00 2.92
2830 3297 9.016438 CCTCCTTTACATAACTAGAGAGGATAC 57.984 40.741 0.00 0.00 40.69 2.24
2994 3461 4.199310 TCAAATCAGGCCTACAATAGCAC 58.801 43.478 3.98 0.00 0.00 4.40
2995 3462 4.502105 TCAAATCAGGCCTACAATAGCA 57.498 40.909 3.98 0.00 0.00 3.49
3068 3539 4.896482 ACACCACAAAGGGCAAAACTATAA 59.104 37.500 0.00 0.00 43.89 0.98
3076 3547 3.799432 ATACTACACCACAAAGGGCAA 57.201 42.857 0.00 0.00 43.89 4.52
3077 3548 3.799432 AATACTACACCACAAAGGGCA 57.201 42.857 0.00 0.00 43.89 5.36
3123 3594 9.800572 TGCATGTGGGCTTAAGTAATATATTAA 57.199 29.630 6.75 0.00 34.04 1.40
3124 3595 9.973661 ATGCATGTGGGCTTAAGTAATATATTA 57.026 29.630 0.00 0.81 34.04 0.98
3125 3596 8.742777 CATGCATGTGGGCTTAAGTAATATATT 58.257 33.333 18.91 2.97 34.04 1.28
3126 3597 7.340232 CCATGCATGTGGGCTTAAGTAATATAT 59.660 37.037 24.58 0.00 35.55 0.86
3127 3598 6.658816 CCATGCATGTGGGCTTAAGTAATATA 59.341 38.462 24.58 0.00 35.55 0.86
3128 3599 5.477984 CCATGCATGTGGGCTTAAGTAATAT 59.522 40.000 24.58 0.00 35.55 1.28
3129 3600 4.826733 CCATGCATGTGGGCTTAAGTAATA 59.173 41.667 24.58 0.00 35.55 0.98
3130 3601 3.638160 CCATGCATGTGGGCTTAAGTAAT 59.362 43.478 24.58 0.00 35.55 1.89
3131 3602 3.023119 CCATGCATGTGGGCTTAAGTAA 58.977 45.455 24.58 0.00 35.55 2.24
3132 3603 2.240921 TCCATGCATGTGGGCTTAAGTA 59.759 45.455 24.58 0.00 39.80 2.24
3133 3604 1.005805 TCCATGCATGTGGGCTTAAGT 59.994 47.619 24.58 0.00 39.80 2.24
3134 3605 1.766494 TCCATGCATGTGGGCTTAAG 58.234 50.000 24.58 6.69 39.80 1.85
3135 3606 1.824230 GTTCCATGCATGTGGGCTTAA 59.176 47.619 24.58 0.23 39.80 1.85
3136 3607 1.473258 GTTCCATGCATGTGGGCTTA 58.527 50.000 24.58 0.00 39.80 3.09
3137 3608 1.259840 GGTTCCATGCATGTGGGCTT 61.260 55.000 24.58 0.00 39.80 4.35
3192 3664 9.908152 AAAGAAATGCAGGTAAACATAAGTTAC 57.092 29.630 0.00 0.00 36.84 2.50
3224 3696 2.548057 GTCTTCCGATTCTGCAACAACA 59.452 45.455 0.00 0.00 0.00 3.33
3314 3786 0.741221 CACGCAGAAGTTCCTAGGCC 60.741 60.000 2.96 0.00 0.00 5.19
3315 3787 0.037232 ACACGCAGAAGTTCCTAGGC 60.037 55.000 2.96 0.00 0.00 3.93
3331 3803 5.346822 CAGCAAAATAAATTCTGGAGCACAC 59.653 40.000 0.00 0.00 0.00 3.82
3348 3820 9.039870 CAATAAGGTTCACAAATAACAGCAAAA 57.960 29.630 0.00 0.00 0.00 2.44
3379 3851 6.545504 AGCGCTAACCATACAAAATAGATG 57.454 37.500 8.99 0.00 0.00 2.90
3391 3863 1.812571 CACTTCCAAAGCGCTAACCAT 59.187 47.619 12.05 0.00 0.00 3.55
3923 4426 8.626526 ACCAATGTCGTTTAATTTGAAGTAACT 58.373 29.630 0.00 0.00 0.00 2.24
3924 4427 8.687301 CACCAATGTCGTTTAATTTGAAGTAAC 58.313 33.333 0.00 0.00 0.00 2.50
4000 4503 7.271511 CGACGGAGGGAGTATATACTTACTAT 58.728 42.308 16.46 7.36 36.50 2.12
4012 4515 0.899720 ATTTTGCGACGGAGGGAGTA 59.100 50.000 0.00 0.00 0.00 2.59
4013 4516 0.899720 TATTTTGCGACGGAGGGAGT 59.100 50.000 0.00 0.00 0.00 3.85
4014 4517 1.933853 CTTATTTTGCGACGGAGGGAG 59.066 52.381 0.00 0.00 0.00 4.30
4015 4518 1.276989 ACTTATTTTGCGACGGAGGGA 59.723 47.619 0.00 0.00 0.00 4.20
4016 4519 1.396996 CACTTATTTTGCGACGGAGGG 59.603 52.381 0.00 0.00 0.00 4.30
4017 4520 2.093783 GTCACTTATTTTGCGACGGAGG 59.906 50.000 0.00 0.00 0.00 4.30
4018 4521 2.993899 AGTCACTTATTTTGCGACGGAG 59.006 45.455 0.00 0.00 0.00 4.63
4019 4522 2.991190 GAGTCACTTATTTTGCGACGGA 59.009 45.455 0.00 0.00 0.00 4.69
4020 4523 2.734606 TGAGTCACTTATTTTGCGACGG 59.265 45.455 0.00 0.00 0.00 4.79
4021 4524 4.084537 AGTTGAGTCACTTATTTTGCGACG 60.085 41.667 0.00 0.00 0.00 5.12
4022 4525 5.344207 AGTTGAGTCACTTATTTTGCGAC 57.656 39.130 0.00 0.00 0.00 5.19
4023 4526 6.183360 ACAAAGTTGAGTCACTTATTTTGCGA 60.183 34.615 9.82 0.00 35.87 5.10
4024 4527 5.971202 ACAAAGTTGAGTCACTTATTTTGCG 59.029 36.000 9.82 0.00 35.87 4.85
4025 4528 8.129211 AGTACAAAGTTGAGTCACTTATTTTGC 58.871 33.333 9.82 0.00 35.87 3.68
4031 4534 9.880157 AAAACTAGTACAAAGTTGAGTCACTTA 57.120 29.630 12.72 0.00 35.87 2.24
4032 4535 8.788325 AAAACTAGTACAAAGTTGAGTCACTT 57.212 30.769 12.72 0.00 38.74 3.16
4033 4536 9.530633 CTAAAACTAGTACAAAGTTGAGTCACT 57.469 33.333 12.72 0.00 37.26 3.41
4034 4537 9.310716 ACTAAAACTAGTACAAAGTTGAGTCAC 57.689 33.333 12.72 0.00 37.26 3.67
4050 4553 9.327529 CGTGACTCAACTTAGTACTAAAACTAG 57.672 37.037 15.95 12.88 33.62 2.57
4051 4554 8.840321 ACGTGACTCAACTTAGTACTAAAACTA 58.160 33.333 15.95 2.77 0.00 2.24
4052 4555 7.710896 ACGTGACTCAACTTAGTACTAAAACT 58.289 34.615 15.95 1.52 0.00 2.66
4053 4556 7.920908 ACGTGACTCAACTTAGTACTAAAAC 57.079 36.000 15.95 4.71 0.00 2.43
4057 4560 9.616634 CAAAATACGTGACTCAACTTAGTACTA 57.383 33.333 0.00 0.00 0.00 1.82
4058 4561 7.597743 CCAAAATACGTGACTCAACTTAGTACT 59.402 37.037 0.00 0.00 0.00 2.73
4059 4562 7.148689 CCCAAAATACGTGACTCAACTTAGTAC 60.149 40.741 0.00 0.00 0.00 2.73
4060 4563 6.869913 CCCAAAATACGTGACTCAACTTAGTA 59.130 38.462 0.00 0.00 0.00 1.82
4061 4564 5.699458 CCCAAAATACGTGACTCAACTTAGT 59.301 40.000 0.00 0.00 0.00 2.24
4062 4565 5.929992 TCCCAAAATACGTGACTCAACTTAG 59.070 40.000 0.00 0.00 0.00 2.18
4063 4566 5.697633 GTCCCAAAATACGTGACTCAACTTA 59.302 40.000 0.00 0.00 0.00 2.24
4064 4567 4.514066 GTCCCAAAATACGTGACTCAACTT 59.486 41.667 0.00 0.00 0.00 2.66
4065 4568 4.062991 GTCCCAAAATACGTGACTCAACT 58.937 43.478 0.00 0.00 0.00 3.16
4066 4569 3.120786 CGTCCCAAAATACGTGACTCAAC 60.121 47.826 0.00 0.00 34.48 3.18
4067 4570 3.061322 CGTCCCAAAATACGTGACTCAA 58.939 45.455 0.00 0.00 34.48 3.02
4068 4571 2.610976 CCGTCCCAAAATACGTGACTCA 60.611 50.000 0.00 0.00 37.40 3.41
4069 4572 1.997606 CCGTCCCAAAATACGTGACTC 59.002 52.381 0.00 0.00 37.40 3.36
4070 4573 1.619827 TCCGTCCCAAAATACGTGACT 59.380 47.619 0.00 0.00 37.40 3.41
4071 4574 1.997606 CTCCGTCCCAAAATACGTGAC 59.002 52.381 0.00 0.00 37.40 3.67
4072 4575 1.066716 CCTCCGTCCCAAAATACGTGA 60.067 52.381 0.00 0.00 37.40 4.35
4073 4576 1.365699 CCTCCGTCCCAAAATACGTG 58.634 55.000 0.00 0.00 37.40 4.49
4074 4577 0.251073 CCCTCCGTCCCAAAATACGT 59.749 55.000 0.00 0.00 37.40 3.57
4075 4578 0.538118 TCCCTCCGTCCCAAAATACG 59.462 55.000 0.00 0.00 38.80 3.06
4076 4579 1.558294 ACTCCCTCCGTCCCAAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
4077 4580 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4078 4581 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4079 4582 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4080 4583 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
4081 4584 3.339713 AATATACTCCCTCCGTCCCAA 57.660 47.619 0.00 0.00 0.00 4.12
4082 4585 3.116862 AGAAATATACTCCCTCCGTCCCA 60.117 47.826 0.00 0.00 0.00 4.37
4083 4586 3.508426 AGAAATATACTCCCTCCGTCCC 58.492 50.000 0.00 0.00 0.00 4.46
4084 4587 5.548181 AAAGAAATATACTCCCTCCGTCC 57.452 43.478 0.00 0.00 0.00 4.79
4155 4658 9.811655 CACAATACTGTTGACTAACATGTAAAG 57.188 33.333 0.00 2.37 45.16 1.85
4467 4994 4.459685 CACCATAAAAACCACGGGATAACA 59.540 41.667 0.00 0.00 0.00 2.41
4553 5082 9.495572 CTTTCTTTGGTATAGATTAGATCACCC 57.504 37.037 0.00 0.00 0.00 4.61
4707 5236 6.317140 ACATTTTCTGTGTATGAGCATGTAGG 59.683 38.462 0.00 0.00 36.48 3.18
4750 5279 2.856222 AGAGAAACAAAGGTGCAGGAG 58.144 47.619 0.00 0.00 0.00 3.69
4751 5280 2.951642 CAAGAGAAACAAAGGTGCAGGA 59.048 45.455 0.00 0.00 0.00 3.86
4880 5410 4.074970 ACAAGTGGAATCATGACAGGAAC 58.925 43.478 0.00 0.00 0.00 3.62
4990 5520 9.712359 GTAGTATTTACCTTTTTAGCCATTTCG 57.288 33.333 0.00 0.00 0.00 3.46
5076 5606 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
5103 5633 7.283127 CCAAATACACACTGCAATATACTCCTT 59.717 37.037 0.00 0.00 0.00 3.36
5122 5663 8.190784 CCATACCAAACAAGAATCTCCAAATAC 58.809 37.037 0.00 0.00 0.00 1.89
5128 5669 5.253330 TGACCATACCAAACAAGAATCTCC 58.747 41.667 0.00 0.00 0.00 3.71
5458 6000 3.370953 GGCTAGAAAGAATTCTGGGAGCA 60.371 47.826 22.92 5.05 45.47 4.26
5702 6245 1.972588 ATAGGCTTCTGGAACACCCT 58.027 50.000 0.00 0.00 35.38 4.34
5778 6321 7.659390 CCCAATGGATAGAGTTAAGAGAATGAC 59.341 40.741 0.00 0.00 0.00 3.06
5876 6419 9.219603 CAGTCATACTAGATTCAACAAAAAGGA 57.780 33.333 0.00 0.00 0.00 3.36
5877 6420 7.965107 GCAGTCATACTAGATTCAACAAAAAGG 59.035 37.037 0.00 0.00 0.00 3.11
5878 6421 8.506437 TGCAGTCATACTAGATTCAACAAAAAG 58.494 33.333 0.00 0.00 0.00 2.27
5879 6422 8.289618 GTGCAGTCATACTAGATTCAACAAAAA 58.710 33.333 0.00 0.00 0.00 1.94
5880 6423 7.094805 GGTGCAGTCATACTAGATTCAACAAAA 60.095 37.037 0.00 0.00 0.00 2.44
5881 6424 6.371548 GGTGCAGTCATACTAGATTCAACAAA 59.628 38.462 0.00 0.00 0.00 2.83
5882 6425 5.874810 GGTGCAGTCATACTAGATTCAACAA 59.125 40.000 0.00 0.00 0.00 2.83
5883 6426 5.046663 TGGTGCAGTCATACTAGATTCAACA 60.047 40.000 0.00 0.00 0.00 3.33
5884 6427 5.419542 TGGTGCAGTCATACTAGATTCAAC 58.580 41.667 0.00 0.00 0.00 3.18
5885 6428 5.675684 TGGTGCAGTCATACTAGATTCAA 57.324 39.130 0.00 0.00 0.00 2.69
5886 6429 5.876651 ATGGTGCAGTCATACTAGATTCA 57.123 39.130 0.00 0.00 0.00 2.57
5887 6430 7.280876 TCAAAATGGTGCAGTCATACTAGATTC 59.719 37.037 0.00 0.00 0.00 2.52
5888 6431 7.112122 TCAAAATGGTGCAGTCATACTAGATT 58.888 34.615 0.00 0.00 0.00 2.40
5889 6432 6.653020 TCAAAATGGTGCAGTCATACTAGAT 58.347 36.000 0.00 0.00 0.00 1.98
5890 6433 6.048732 TCAAAATGGTGCAGTCATACTAGA 57.951 37.500 0.00 0.00 0.00 2.43
5891 6434 6.932356 ATCAAAATGGTGCAGTCATACTAG 57.068 37.500 3.26 0.00 0.00 2.57
5892 6435 8.800370 TTTATCAAAATGGTGCAGTCATACTA 57.200 30.769 3.26 0.00 0.00 1.82
5893 6436 7.701539 TTTATCAAAATGGTGCAGTCATACT 57.298 32.000 3.26 0.00 0.00 2.12
5894 6437 8.931385 ATTTTATCAAAATGGTGCAGTCATAC 57.069 30.769 3.26 0.00 39.50 2.39
5924 6467 1.351076 TGAGTTCCCTGCAGTCATCA 58.649 50.000 13.81 6.61 0.00 3.07
6133 6676 5.560724 AGCTGCCAATAGACTTGTTTTCTA 58.439 37.500 0.00 0.00 0.00 2.10
6359 6902 5.221244 GGAAAGCACCACAAGTTTAGTTGAT 60.221 40.000 4.40 0.00 0.00 2.57
6389 6944 3.073946 ACCCAACTATAACAACAGCAGGT 59.926 43.478 0.00 0.00 0.00 4.00
6494 7058 8.514330 TTCTCGGTTGTATATGCCTTATTTTT 57.486 30.769 0.00 0.00 0.00 1.94
6499 7064 7.276658 TGAATTTCTCGGTTGTATATGCCTTA 58.723 34.615 0.00 0.00 0.00 2.69
6674 7242 4.277515 TGACAGATCAGTTTCCCTTGAG 57.722 45.455 0.00 0.00 0.00 3.02
6724 7292 2.930682 GTCTTCGAAGCACCATACCTTC 59.069 50.000 20.56 0.00 35.31 3.46
6826 7394 3.952323 AGTTTGCTGATTCATGGATCCAG 59.048 43.478 21.33 12.25 0.00 3.86
6976 7545 7.931015 TCATTACAGAGGTCATAATAGGGTT 57.069 36.000 0.00 0.00 0.00 4.11
6980 7549 9.914131 TCGATTTCATTACAGAGGTCATAATAG 57.086 33.333 0.00 0.00 0.00 1.73
7024 7595 0.599558 CCTCGTCGAGGTAACCAACA 59.400 55.000 29.66 0.00 44.25 3.33
7042 7613 0.529378 CATCCAGCAAAACCTCAGCC 59.471 55.000 0.00 0.00 0.00 4.85
7100 7671 3.118956 ACAGAACCGAGATAAGCAGGAAG 60.119 47.826 0.00 0.00 0.00 3.46
7112 7683 3.668596 ACAACGAAAAACAGAACCGAG 57.331 42.857 0.00 0.00 0.00 4.63
7114 7685 6.799786 ATAAAACAACGAAAAACAGAACCG 57.200 33.333 0.00 0.00 0.00 4.44
7121 7693 9.549923 CAGAATCGAAATAAAACAACGAAAAAC 57.450 29.630 0.00 0.00 36.62 2.43
7130 7702 5.705441 AGTCCAGCAGAATCGAAATAAAACA 59.295 36.000 0.00 0.00 0.00 2.83
7173 7745 1.070134 TGGAACGTTTCAGAGGTCCAG 59.930 52.381 4.79 0.00 0.00 3.86
7203 7775 2.307768 TCCTGTGGATCACCTATCGAC 58.692 52.381 0.00 0.00 42.10 4.20
7287 7887 7.363031 AGTAGTTTGGATCAGAGGGAGTATAA 58.637 38.462 0.00 0.00 0.00 0.98
7299 7899 4.264397 TGAGAGAGGGAGTAGTTTGGATCA 60.264 45.833 0.00 0.00 0.00 2.92
7300 7901 4.282496 TGAGAGAGGGAGTAGTTTGGATC 58.718 47.826 0.00 0.00 0.00 3.36
7308 7909 7.513371 ACGTTTATTATGAGAGAGGGAGTAG 57.487 40.000 0.00 0.00 0.00 2.57
7353 7954 8.314751 CCCTCCGTCTCATAATATAAGAACATT 58.685 37.037 0.00 0.00 0.00 2.71
7354 7955 7.674348 TCCCTCCGTCTCATAATATAAGAACAT 59.326 37.037 0.00 0.00 0.00 2.71
7355 7956 7.008332 TCCCTCCGTCTCATAATATAAGAACA 58.992 38.462 0.00 0.00 0.00 3.18
7356 7957 7.177041 ACTCCCTCCGTCTCATAATATAAGAAC 59.823 40.741 0.00 0.00 0.00 3.01
7357 7958 7.239438 ACTCCCTCCGTCTCATAATATAAGAA 58.761 38.462 0.00 0.00 0.00 2.52
7358 7959 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
7359 7960 8.625651 CATACTCCCTCCGTCTCATAATATAAG 58.374 40.741 0.00 0.00 0.00 1.73
7360 7961 7.068348 GCATACTCCCTCCGTCTCATAATATAA 59.932 40.741 0.00 0.00 0.00 0.98
7361 7962 6.546403 GCATACTCCCTCCGTCTCATAATATA 59.454 42.308 0.00 0.00 0.00 0.86
7362 7963 5.361285 GCATACTCCCTCCGTCTCATAATAT 59.639 44.000 0.00 0.00 0.00 1.28
7363 7964 4.705507 GCATACTCCCTCCGTCTCATAATA 59.294 45.833 0.00 0.00 0.00 0.98
7364 7965 3.511934 GCATACTCCCTCCGTCTCATAAT 59.488 47.826 0.00 0.00 0.00 1.28
7365 7966 2.891580 GCATACTCCCTCCGTCTCATAA 59.108 50.000 0.00 0.00 0.00 1.90
7366 7967 2.108425 AGCATACTCCCTCCGTCTCATA 59.892 50.000 0.00 0.00 0.00 2.15
7367 7968 1.133325 AGCATACTCCCTCCGTCTCAT 60.133 52.381 0.00 0.00 0.00 2.90
7368 7969 0.259065 AGCATACTCCCTCCGTCTCA 59.741 55.000 0.00 0.00 0.00 3.27
7369 7970 0.955905 GAGCATACTCCCTCCGTCTC 59.044 60.000 0.00 0.00 36.90 3.36
7370 7971 0.553819 AGAGCATACTCCCTCCGTCT 59.446 55.000 0.00 0.00 44.65 4.18
7371 7972 1.404843 AAGAGCATACTCCCTCCGTC 58.595 55.000 0.00 0.00 44.65 4.79
7372 7973 2.750141 TAAGAGCATACTCCCTCCGT 57.250 50.000 0.00 0.00 44.65 4.69
7373 7974 5.923733 AATATAAGAGCATACTCCCTCCG 57.076 43.478 0.00 0.00 44.65 4.63
7374 7975 8.540507 TCATAATATAAGAGCATACTCCCTCC 57.459 38.462 0.00 0.00 44.65 4.30
7375 7976 9.415008 TCTCATAATATAAGAGCATACTCCCTC 57.585 37.037 0.00 0.00 44.65 4.30
7376 7977 9.196139 GTCTCATAATATAAGAGCATACTCCCT 57.804 37.037 0.00 0.00 44.65 4.20
7377 7978 9.196139 AGTCTCATAATATAAGAGCATACTCCC 57.804 37.037 0.00 0.00 44.65 4.30
7385 7986 9.929722 CGTCTCATAGTCTCATAATATAAGAGC 57.070 37.037 0.00 0.00 0.00 4.09
7389 7990 9.397280 CCTCCGTCTCATAGTCTCATAATATAA 57.603 37.037 0.00 0.00 0.00 0.98
7390 7991 7.993758 CCCTCCGTCTCATAGTCTCATAATATA 59.006 40.741 0.00 0.00 0.00 0.86
7391 7992 6.831353 CCCTCCGTCTCATAGTCTCATAATAT 59.169 42.308 0.00 0.00 0.00 1.28
7392 7993 6.012771 TCCCTCCGTCTCATAGTCTCATAATA 60.013 42.308 0.00 0.00 0.00 0.98
7393 7994 5.013547 CCCTCCGTCTCATAGTCTCATAAT 58.986 45.833 0.00 0.00 0.00 1.28
7394 7995 4.104261 TCCCTCCGTCTCATAGTCTCATAA 59.896 45.833 0.00 0.00 0.00 1.90
7395 7996 3.651423 TCCCTCCGTCTCATAGTCTCATA 59.349 47.826 0.00 0.00 0.00 2.15
7396 7997 2.443632 TCCCTCCGTCTCATAGTCTCAT 59.556 50.000 0.00 0.00 0.00 2.90
7397 7998 1.844497 TCCCTCCGTCTCATAGTCTCA 59.156 52.381 0.00 0.00 0.00 3.27
7398 7999 2.158726 ACTCCCTCCGTCTCATAGTCTC 60.159 54.545 0.00 0.00 0.00 3.36
7399 8000 1.847737 ACTCCCTCCGTCTCATAGTCT 59.152 52.381 0.00 0.00 0.00 3.24
7400 8001 2.351706 ACTCCCTCCGTCTCATAGTC 57.648 55.000 0.00 0.00 0.00 2.59
7401 8002 3.947612 TTACTCCCTCCGTCTCATAGT 57.052 47.619 0.00 0.00 0.00 2.12
7402 8003 4.827835 TCAATTACTCCCTCCGTCTCATAG 59.172 45.833 0.00 0.00 0.00 2.23
7403 8004 4.583489 GTCAATTACTCCCTCCGTCTCATA 59.417 45.833 0.00 0.00 0.00 2.15
7404 8005 3.385111 GTCAATTACTCCCTCCGTCTCAT 59.615 47.826 0.00 0.00 0.00 2.90
7405 8006 2.758979 GTCAATTACTCCCTCCGTCTCA 59.241 50.000 0.00 0.00 0.00 3.27
7406 8007 2.223525 CGTCAATTACTCCCTCCGTCTC 60.224 54.545 0.00 0.00 0.00 3.36
7416 8017 1.363744 AGCTGCTGCGTCAATTACTC 58.636 50.000 10.14 0.00 45.42 2.59
7430 8031 3.436700 AAGTTGTTGTACCAAAGCTGC 57.563 42.857 0.00 0.00 0.00 5.25
7431 8032 4.743493 ACAAAGTTGTTGTACCAAAGCTG 58.257 39.130 0.00 0.00 38.47 4.24
7446 8047 9.528018 CCAAATTAATTGACACAGTACAAAGTT 57.472 29.630 0.39 0.00 41.85 2.66
7447 8048 8.908903 TCCAAATTAATTGACACAGTACAAAGT 58.091 29.630 0.39 0.00 41.85 2.66
7477 8078 4.103311 GCTCCTATCCAAATGTACTCCCTT 59.897 45.833 0.00 0.00 0.00 3.95
7478 8079 3.648545 GCTCCTATCCAAATGTACTCCCT 59.351 47.826 0.00 0.00 0.00 4.20
7479 8080 3.244596 GGCTCCTATCCAAATGTACTCCC 60.245 52.174 0.00 0.00 0.00 4.30
7480 8081 3.391296 TGGCTCCTATCCAAATGTACTCC 59.609 47.826 0.00 0.00 0.00 3.85
7490 8091 3.121929 AGAGTTCTTGGCTCCTATCCA 57.878 47.619 0.00 0.00 33.69 3.41
7524 8125 7.236432 TCCCTCCAATCCAAATTAATTGACAAA 59.764 33.333 0.39 0.00 41.85 2.83
7525 8126 6.728164 TCCCTCCAATCCAAATTAATTGACAA 59.272 34.615 0.39 0.00 41.85 3.18
7526 8127 6.259893 TCCCTCCAATCCAAATTAATTGACA 58.740 36.000 0.39 0.00 41.85 3.58
7527 8128 6.381133 ACTCCCTCCAATCCAAATTAATTGAC 59.619 38.462 0.39 0.00 41.85 3.18
7528 8129 6.502138 ACTCCCTCCAATCCAAATTAATTGA 58.498 36.000 0.39 0.00 41.85 2.57
7529 8130 6.796785 ACTCCCTCCAATCCAAATTAATTG 57.203 37.500 0.39 0.00 38.84 2.32
7530 8131 7.418378 TGTACTCCCTCCAATCCAAATTAATT 58.582 34.615 0.00 0.00 0.00 1.40
7531 8132 6.980577 TGTACTCCCTCCAATCCAAATTAAT 58.019 36.000 0.00 0.00 0.00 1.40
7532 8133 6.395780 TGTACTCCCTCCAATCCAAATTAA 57.604 37.500 0.00 0.00 0.00 1.40
7533 8134 6.590656 ATGTACTCCCTCCAATCCAAATTA 57.409 37.500 0.00 0.00 0.00 1.40
7534 8135 4.946160 TGTACTCCCTCCAATCCAAATT 57.054 40.909 0.00 0.00 0.00 1.82
7535 8136 5.449553 GAATGTACTCCCTCCAATCCAAAT 58.550 41.667 0.00 0.00 0.00 2.32
7536 8137 4.325030 GGAATGTACTCCCTCCAATCCAAA 60.325 45.833 0.00 0.00 30.17 3.28
7537 8138 3.202151 GGAATGTACTCCCTCCAATCCAA 59.798 47.826 0.00 0.00 30.17 3.53
7538 8139 2.777692 GGAATGTACTCCCTCCAATCCA 59.222 50.000 0.00 0.00 30.17 3.41
7539 8140 2.777692 TGGAATGTACTCCCTCCAATCC 59.222 50.000 0.00 0.00 35.02 3.01
7540 8141 4.200092 GTTGGAATGTACTCCCTCCAATC 58.800 47.826 16.32 9.91 46.69 2.67
7541 8142 3.591527 TGTTGGAATGTACTCCCTCCAAT 59.408 43.478 16.32 0.00 46.69 3.16
7542 8143 2.983192 TGTTGGAATGTACTCCCTCCAA 59.017 45.455 11.88 11.88 43.91 3.53
7543 8144 2.626785 TGTTGGAATGTACTCCCTCCA 58.373 47.619 0.00 0.00 36.16 3.86
7544 8145 3.009143 AGTTGTTGGAATGTACTCCCTCC 59.991 47.826 0.00 0.00 34.22 4.30
7545 8146 4.020128 AGAGTTGTTGGAATGTACTCCCTC 60.020 45.833 0.00 0.00 36.71 4.30
7546 8147 3.910627 AGAGTTGTTGGAATGTACTCCCT 59.089 43.478 0.00 0.00 36.71 4.20
7547 8148 4.254492 GAGAGTTGTTGGAATGTACTCCC 58.746 47.826 0.00 0.00 36.71 4.30
7548 8149 4.020128 AGGAGAGTTGTTGGAATGTACTCC 60.020 45.833 0.00 0.00 40.83 3.85
7549 8150 5.153950 AGGAGAGTTGTTGGAATGTACTC 57.846 43.478 0.00 0.00 36.38 2.59
7550 8151 6.875972 ATAGGAGAGTTGTTGGAATGTACT 57.124 37.500 0.00 0.00 0.00 2.73
7551 8152 9.614792 AAATATAGGAGAGTTGTTGGAATGTAC 57.385 33.333 0.00 0.00 0.00 2.90
7553 8154 9.178758 GAAAATATAGGAGAGTTGTTGGAATGT 57.821 33.333 0.00 0.00 0.00 2.71
7554 8155 9.177608 TGAAAATATAGGAGAGTTGTTGGAATG 57.822 33.333 0.00 0.00 0.00 2.67
7555 8156 9.927081 ATGAAAATATAGGAGAGTTGTTGGAAT 57.073 29.630 0.00 0.00 0.00 3.01
7570 8171 6.013379 TCTGGCAGGGTCCTATGAAAATATAG 60.013 42.308 15.73 0.00 0.00 1.31
7571 8172 5.849475 TCTGGCAGGGTCCTATGAAAATATA 59.151 40.000 15.73 0.00 0.00 0.86
7572 8173 4.665009 TCTGGCAGGGTCCTATGAAAATAT 59.335 41.667 15.73 0.00 0.00 1.28
7573 8174 4.044308 TCTGGCAGGGTCCTATGAAAATA 58.956 43.478 15.73 0.00 0.00 1.40
7574 8175 2.852449 TCTGGCAGGGTCCTATGAAAAT 59.148 45.455 15.73 0.00 0.00 1.82
7575 8176 2.026262 GTCTGGCAGGGTCCTATGAAAA 60.026 50.000 15.73 0.00 0.00 2.29
7576 8177 1.559682 GTCTGGCAGGGTCCTATGAAA 59.440 52.381 15.73 0.00 0.00 2.69
7577 8178 1.204146 GTCTGGCAGGGTCCTATGAA 58.796 55.000 15.73 0.00 0.00 2.57
7578 8179 0.691078 GGTCTGGCAGGGTCCTATGA 60.691 60.000 15.73 0.00 0.00 2.15
7579 8180 0.982852 TGGTCTGGCAGGGTCCTATG 60.983 60.000 15.73 0.00 0.00 2.23
7580 8181 0.983378 GTGGTCTGGCAGGGTCCTAT 60.983 60.000 15.73 0.00 0.00 2.57
7593 8194 4.475345 AGCTAGGAATATTCTCGTGGTCT 58.525 43.478 14.95 4.68 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.