Multiple sequence alignment - TraesCS1A01G326300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G326300 chr1A 100.000 2866 0 0 1 2866 516654039 516651174 0.000000e+00 5293.0
1 TraesCS1A01G326300 chr1A 82.803 314 32 11 2497 2807 541435596 541435890 7.880000e-66 261.0
2 TraesCS1A01G326300 chr6A 97.538 1625 33 2 899 2517 85352319 85353942 0.000000e+00 2772.0
3 TraesCS1A01G326300 chr6A 96.320 1549 32 4 988 2512 31024602 31026149 0.000000e+00 2521.0
4 TraesCS1A01G326300 chr6A 98.624 436 6 0 410 845 85351884 85352319 0.000000e+00 773.0
5 TraesCS1A01G326300 chr6A 97.821 413 9 0 1 413 85351219 85351631 0.000000e+00 713.0
6 TraesCS1A01G326300 chr3D 96.170 1201 40 4 877 2073 50895938 50897136 0.000000e+00 1958.0
7 TraesCS1A01G326300 chr3D 95.726 468 20 0 2040 2507 50897141 50897608 0.000000e+00 754.0
8 TraesCS1A01G326300 chr3D 95.896 463 17 2 410 872 50895509 50895969 0.000000e+00 749.0
9 TraesCS1A01G326300 chr3D 97.579 413 10 0 1 413 50894844 50895256 0.000000e+00 708.0
10 TraesCS1A01G326300 chr7B 94.959 1210 50 6 877 2076 471225891 471224683 0.000000e+00 1886.0
11 TraesCS1A01G326300 chr7B 95.662 461 19 1 410 870 471226319 471225860 0.000000e+00 739.0
12 TraesCS1A01G326300 chr7B 95.400 413 19 0 1 413 471226984 471226572 0.000000e+00 658.0
13 TraesCS1A01G326300 chr4A 92.182 1164 82 7 895 2052 44650989 44652149 0.000000e+00 1637.0
14 TraesCS1A01G326300 chr4A 91.801 1183 78 9 885 2052 44782467 44783645 0.000000e+00 1629.0
15 TraesCS1A01G326300 chr4A 92.344 849 59 4 1208 2052 44645359 44644513 0.000000e+00 1203.0
16 TraesCS1A01G326300 chr4A 94.940 415 19 1 1 413 44649916 44650330 0.000000e+00 649.0
17 TraesCS1A01G326300 chr4A 94.458 415 21 1 1 413 44646551 44646137 3.110000e-179 638.0
18 TraesCS1A01G326300 chr4A 93.976 415 23 1 1 413 44781390 44781804 6.740000e-176 627.0
19 TraesCS1A01G326300 chr4A 91.170 453 36 3 2058 2507 44644362 44643911 1.890000e-171 612.0
20 TraesCS1A01G326300 chr4A 90.549 455 39 3 2058 2509 44783796 44784249 1.470000e-167 599.0
21 TraesCS1A01G326300 chr4A 90.132 456 39 5 2058 2509 44652300 44652753 3.180000e-164 588.0
22 TraesCS1A01G326300 chr4A 89.425 435 21 13 410 843 44782057 44782467 2.530000e-145 525.0
23 TraesCS1A01G326300 chr4A 89.327 431 21 13 410 839 44645884 44645478 4.230000e-143 518.0
24 TraesCS1A01G326300 chr4A 95.185 270 13 0 2597 2866 608156847 608156578 7.340000e-116 427.0
25 TraesCS1A01G326300 chr3A 90.702 1183 78 12 873 2046 264036389 264037548 0.000000e+00 1546.0
26 TraesCS1A01G326300 chr3A 95.581 430 18 1 410 839 70484936 70484508 0.000000e+00 688.0
27 TraesCS1A01G326300 chr3A 95.181 415 18 1 1 413 688613635 688613221 0.000000e+00 654.0
28 TraesCS1A01G326300 chr3A 90.989 455 37 3 2058 2509 688611227 688610774 6.790000e-171 610.0
29 TraesCS1A01G326300 chr3A 89.376 433 21 13 410 841 688612968 688612560 3.270000e-144 521.0
30 TraesCS1A01G326300 chr3A 97.561 41 1 0 2036 2076 70483274 70483234 1.420000e-08 71.3
31 TraesCS1A01G326300 chr1D 91.684 962 67 8 1099 2052 202978686 202979642 0.000000e+00 1321.0
32 TraesCS1A01G326300 chr1D 96.098 615 18 2 879 1487 456810716 456811330 0.000000e+00 998.0
33 TraesCS1A01G326300 chr1D 98.598 428 5 1 410 837 456810290 456810716 0.000000e+00 756.0
34 TraesCS1A01G326300 chr1D 96.852 413 12 1 1 413 456809626 456810037 0.000000e+00 689.0
35 TraesCS1A01G326300 chr1D 91.630 454 34 3 2058 2509 202979790 202980241 2.420000e-175 625.0
36 TraesCS1A01G326300 chr6D 95.175 829 29 6 1258 2076 28691870 28691043 0.000000e+00 1299.0
37 TraesCS1A01G326300 chr6D 96.280 457 16 1 2058 2514 28691023 28690568 0.000000e+00 749.0
38 TraesCS1A01G326300 chr6B 91.905 803 60 4 899 1700 708192097 708192895 0.000000e+00 1118.0
39 TraesCS1A01G326300 chr6B 95.631 412 18 0 2 413 708191032 708191443 0.000000e+00 662.0
40 TraesCS1A01G326300 chr6B 88.318 428 25 13 410 835 708191697 708192101 9.230000e-135 490.0
41 TraesCS1A01G326300 chr2B 93.897 426 21 2 410 835 730526226 730526646 3.110000e-179 638.0
42 TraesCS1A01G326300 chr5D 88.649 370 34 4 2497 2866 504534347 504533986 7.290000e-121 444.0
43 TraesCS1A01G326300 chr7A 94.465 271 14 1 2597 2866 125693243 125692973 1.590000e-112 416.0
44 TraesCS1A01G326300 chr5A 86.364 374 41 6 2495 2866 34518526 34518891 1.600000e-107 399.0
45 TraesCS1A01G326300 chr2A 86.981 361 35 6 2507 2866 712974794 712974445 2.070000e-106 396.0
46 TraesCS1A01G326300 chr2D 87.032 347 34 8 2522 2866 361411124 361411461 5.790000e-102 381.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G326300 chr1A 516651174 516654039 2865 True 5293.000000 5293 100.000000 1 2866 1 chr1A.!!$R1 2865
1 TraesCS1A01G326300 chr6A 31024602 31026149 1547 False 2521.000000 2521 96.320000 988 2512 1 chr6A.!!$F1 1524
2 TraesCS1A01G326300 chr6A 85351219 85353942 2723 False 1419.333333 2772 97.994333 1 2517 3 chr6A.!!$F2 2516
3 TraesCS1A01G326300 chr3D 50894844 50897608 2764 False 1042.250000 1958 96.342750 1 2507 4 chr3D.!!$F1 2506
4 TraesCS1A01G326300 chr7B 471224683 471226984 2301 True 1094.333333 1886 95.340333 1 2076 3 chr7B.!!$R1 2075
5 TraesCS1A01G326300 chr4A 44649916 44652753 2837 False 958.000000 1637 92.418000 1 2509 3 chr4A.!!$F1 2508
6 TraesCS1A01G326300 chr4A 44781390 44784249 2859 False 845.000000 1629 91.437750 1 2509 4 chr4A.!!$F2 2508
7 TraesCS1A01G326300 chr4A 44643911 44646551 2640 True 742.750000 1203 91.824750 1 2507 4 chr4A.!!$R2 2506
8 TraesCS1A01G326300 chr3A 264036389 264037548 1159 False 1546.000000 1546 90.702000 873 2046 1 chr3A.!!$F1 1173
9 TraesCS1A01G326300 chr3A 688610774 688613635 2861 True 595.000000 654 91.848667 1 2509 3 chr3A.!!$R2 2508
10 TraesCS1A01G326300 chr3A 70483234 70484936 1702 True 379.650000 688 96.571000 410 2076 2 chr3A.!!$R1 1666
11 TraesCS1A01G326300 chr1D 202978686 202980241 1555 False 973.000000 1321 91.657000 1099 2509 2 chr1D.!!$F1 1410
12 TraesCS1A01G326300 chr1D 456809626 456811330 1704 False 814.333333 998 97.182667 1 1487 3 chr1D.!!$F2 1486
13 TraesCS1A01G326300 chr6D 28690568 28691870 1302 True 1024.000000 1299 95.727500 1258 2514 2 chr6D.!!$R1 1256
14 TraesCS1A01G326300 chr6B 708191032 708192895 1863 False 756.666667 1118 91.951333 2 1700 3 chr6B.!!$F1 1698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 1150 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2615 3102 0.4546 CTTCATGCATGGCACCACTC 59.545 55.0 25.97 0.0 43.04 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.828273 CCACCTGATGATTACAAATGGAAGTA 59.172 38.462 0.00 0.00 0.00 2.24
79 80 3.741075 GCTCGATGGGTGTCATGTTGATA 60.741 47.826 0.00 0.00 35.97 2.15
87 88 6.241645 TGGGTGTCATGTTGATATTTGTGTA 58.758 36.000 0.00 0.00 0.00 2.90
142 143 4.508662 GAAGCAAGCTATCACCACTAACT 58.491 43.478 0.00 0.00 0.00 2.24
398 401 2.552155 CCAACGGTCCTGGATTTCTTGA 60.552 50.000 0.00 0.00 35.85 3.02
622 882 7.066284 GCTAATGACATGTTTGATGAGTACCTT 59.934 37.037 0.00 0.00 0.00 3.50
881 1150 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
882 1151 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
883 1152 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
884 1153 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
885 1154 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
886 1155 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
887 1156 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
888 1157 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
889 1158 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
890 1159 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
891 1160 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
892 1161 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
893 1162 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
894 1163 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
895 1164 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
896 1165 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
897 1166 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
898 1167 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
916 1204 3.991121 TGTGTGTGTGTGTGATATTACCG 59.009 43.478 0.00 0.00 0.00 4.02
921 1209 4.082136 TGTGTGTGTGATATTACCGTGCTA 60.082 41.667 0.00 0.00 0.00 3.49
1004 1292 3.763897 GCATTTTCTTGTAGGACCATGGT 59.236 43.478 19.89 19.89 0.00 3.55
1049 1338 6.575244 TGGTAGAAATTACCTCACATGGAT 57.425 37.500 0.00 0.00 38.39 3.41
1147 1443 2.260822 AGTCCCATGTCTACAGTGCTT 58.739 47.619 0.00 0.00 0.00 3.91
1162 1458 8.755028 TCTACAGTGCTTTTATAGGTAATGTGA 58.245 33.333 0.00 0.00 30.36 3.58
1315 1611 8.043113 ACAAGCTGTCAATTGATAGTGAAGATA 58.957 33.333 26.86 0.00 35.94 1.98
1319 1615 8.494347 GCTGTCAATTGATAGTGAAGATATGTC 58.506 37.037 26.86 7.81 35.94 3.06
1426 1759 0.445829 TCTTTGTGTGTGTGTGTGCG 59.554 50.000 0.00 0.00 0.00 5.34
1539 1872 1.121407 AGGTGCTGTCACAGGTGCTA 61.121 55.000 7.00 0.00 44.87 3.49
1629 1964 2.475466 GGTGATGCCATCCTGTGCG 61.475 63.158 1.49 0.00 37.17 5.34
1639 1974 2.536997 ATCCTGTGCGTACTTGGGGC 62.537 60.000 4.97 0.00 0.00 5.80
1663 1998 7.040201 GGCTATGAAAGGCTCATTTAATGATGA 60.040 37.037 8.17 0.00 42.46 2.92
1856 2191 4.335416 TCAGGAAGGAATGGTTGTTGATC 58.665 43.478 0.00 0.00 0.00 2.92
2022 2357 8.559536 GTGAGACATGTTATAATGTGTAATGGG 58.440 37.037 0.00 0.00 40.87 4.00
2146 2630 4.330074 CCTGTTGCCTATCTACACTTTTCG 59.670 45.833 0.00 0.00 0.00 3.46
2170 2654 7.069331 TCGGCCTATTTTTCATGTATTTTGGAT 59.931 33.333 0.00 0.00 0.00 3.41
2512 2999 7.277098 GTCTACATCCAAACATAGCGTAAAAGA 59.723 37.037 0.00 0.00 0.00 2.52
2513 3000 7.985184 TCTACATCCAAACATAGCGTAAAAGAT 59.015 33.333 0.00 0.00 0.00 2.40
2514 3001 9.256477 CTACATCCAAACATAGCGTAAAAGATA 57.744 33.333 0.00 0.00 0.00 1.98
2515 3002 8.142994 ACATCCAAACATAGCGTAAAAGATAG 57.857 34.615 0.00 0.00 0.00 2.08
2516 3003 7.769044 ACATCCAAACATAGCGTAAAAGATAGT 59.231 33.333 0.00 0.00 0.00 2.12
2517 3004 9.256477 CATCCAAACATAGCGTAAAAGATAGTA 57.744 33.333 0.00 0.00 0.00 1.82
2518 3005 9.998106 ATCCAAACATAGCGTAAAAGATAGTAT 57.002 29.630 0.00 0.00 0.00 2.12
2519 3006 9.472361 TCCAAACATAGCGTAAAAGATAGTATC 57.528 33.333 1.55 1.55 0.00 2.24
2520 3007 9.256477 CCAAACATAGCGTAAAAGATAGTATCA 57.744 33.333 12.66 0.00 0.00 2.15
2523 3010 8.522178 ACATAGCGTAAAAGATAGTATCAAGC 57.478 34.615 12.66 5.63 0.00 4.01
2524 3011 8.141909 ACATAGCGTAAAAGATAGTATCAAGCA 58.858 33.333 12.66 0.00 0.00 3.91
2525 3012 8.642885 CATAGCGTAAAAGATAGTATCAAGCAG 58.357 37.037 12.66 1.03 0.00 4.24
2526 3013 6.574350 AGCGTAAAAGATAGTATCAAGCAGT 58.426 36.000 12.66 0.00 0.00 4.40
2527 3014 7.713750 AGCGTAAAAGATAGTATCAAGCAGTA 58.286 34.615 12.66 0.00 0.00 2.74
2528 3015 7.648510 AGCGTAAAAGATAGTATCAAGCAGTAC 59.351 37.037 12.66 5.12 0.00 2.73
2529 3016 7.434307 GCGTAAAAGATAGTATCAAGCAGTACA 59.566 37.037 12.66 0.00 0.00 2.90
2530 3017 8.959058 CGTAAAAGATAGTATCAAGCAGTACAG 58.041 37.037 12.66 0.00 0.00 2.74
2531 3018 7.778470 AAAAGATAGTATCAAGCAGTACAGC 57.222 36.000 12.66 1.29 0.00 4.40
2533 3020 6.083098 AGATAGTATCAAGCAGTACAGCTG 57.917 41.667 14.06 13.48 45.89 4.24
2534 3021 5.596361 AGATAGTATCAAGCAGTACAGCTGT 59.404 40.000 25.12 25.12 45.89 4.40
2535 3022 6.773200 AGATAGTATCAAGCAGTACAGCTGTA 59.227 38.462 22.67 22.67 45.89 2.74
2536 3023 5.255710 AGTATCAAGCAGTACAGCTGTAG 57.744 43.478 26.70 16.78 45.89 2.74
2537 3024 4.707448 AGTATCAAGCAGTACAGCTGTAGT 59.293 41.667 26.70 26.04 45.89 2.73
2538 3025 4.543590 ATCAAGCAGTACAGCTGTAGTT 57.456 40.909 27.96 16.53 45.89 2.24
2539 3026 4.336889 TCAAGCAGTACAGCTGTAGTTT 57.663 40.909 27.96 19.13 45.89 2.66
2540 3027 4.703897 TCAAGCAGTACAGCTGTAGTTTT 58.296 39.130 27.96 21.68 45.89 2.43
2541 3028 5.849510 TCAAGCAGTACAGCTGTAGTTTTA 58.150 37.500 27.96 12.34 45.89 1.52
2542 3029 5.926542 TCAAGCAGTACAGCTGTAGTTTTAG 59.073 40.000 27.96 18.72 45.89 1.85
2543 3030 5.723672 AGCAGTACAGCTGTAGTTTTAGA 57.276 39.130 27.96 4.50 46.64 2.10
2544 3031 6.097915 AGCAGTACAGCTGTAGTTTTAGAA 57.902 37.500 27.96 3.73 46.64 2.10
2545 3032 6.159988 AGCAGTACAGCTGTAGTTTTAGAAG 58.840 40.000 27.96 17.16 46.64 2.85
2546 3033 6.015350 AGCAGTACAGCTGTAGTTTTAGAAGA 60.015 38.462 27.96 2.42 46.64 2.87
2547 3034 6.645415 GCAGTACAGCTGTAGTTTTAGAAGAA 59.355 38.462 27.96 2.20 46.64 2.52
2548 3035 7.170998 GCAGTACAGCTGTAGTTTTAGAAGAAA 59.829 37.037 27.96 1.74 46.64 2.52
2549 3036 9.042008 CAGTACAGCTGTAGTTTTAGAAGAAAA 57.958 33.333 27.96 1.06 40.27 2.29
2550 3037 9.609346 AGTACAGCTGTAGTTTTAGAAGAAAAA 57.391 29.630 26.70 0.00 30.42 1.94
2574 3061 9.638239 AAAACTAAATACAAATGCACCACTATG 57.362 29.630 0.00 0.00 0.00 2.23
2575 3062 6.795399 ACTAAATACAAATGCACCACTATGC 58.205 36.000 0.00 0.00 46.32 3.14
2581 3068 3.190878 GCACCACTATGCACCAGC 58.809 61.111 0.00 0.00 45.39 4.85
2591 3078 4.675404 GCACCAGCAACTACGAGT 57.325 55.556 0.00 0.00 41.58 4.18
2592 3079 3.806591 GCACCAGCAACTACGAGTA 57.193 52.632 0.00 0.00 41.58 2.59
2593 3080 2.074547 GCACCAGCAACTACGAGTAA 57.925 50.000 0.00 0.00 41.58 2.24
2594 3081 1.725164 GCACCAGCAACTACGAGTAAC 59.275 52.381 0.00 0.00 41.58 2.50
2595 3082 2.864882 GCACCAGCAACTACGAGTAACA 60.865 50.000 0.00 0.00 41.58 2.41
2596 3083 3.386486 CACCAGCAACTACGAGTAACAA 58.614 45.455 0.00 0.00 0.00 2.83
2597 3084 3.805422 CACCAGCAACTACGAGTAACAAA 59.195 43.478 0.00 0.00 0.00 2.83
2598 3085 4.056050 ACCAGCAACTACGAGTAACAAAG 58.944 43.478 0.00 0.00 0.00 2.77
2599 3086 3.120649 CCAGCAACTACGAGTAACAAAGC 60.121 47.826 0.00 0.00 0.00 3.51
2600 3087 3.741344 CAGCAACTACGAGTAACAAAGCT 59.259 43.478 0.00 0.00 0.00 3.74
2601 3088 3.741344 AGCAACTACGAGTAACAAAGCTG 59.259 43.478 0.00 0.00 0.00 4.24
2602 3089 3.739300 GCAACTACGAGTAACAAAGCTGA 59.261 43.478 0.00 0.00 0.00 4.26
2603 3090 4.210537 GCAACTACGAGTAACAAAGCTGAA 59.789 41.667 0.00 0.00 0.00 3.02
2604 3091 5.612709 GCAACTACGAGTAACAAAGCTGAAG 60.613 44.000 0.00 0.00 0.00 3.02
2605 3092 3.988517 ACTACGAGTAACAAAGCTGAAGC 59.011 43.478 0.00 0.00 42.49 3.86
2615 3102 3.123620 GCTGAAGCTGCGGAGTGG 61.124 66.667 4.05 0.00 38.21 4.00
2616 3103 2.659016 CTGAAGCTGCGGAGTGGA 59.341 61.111 5.62 0.00 0.00 4.02
2617 3104 1.447489 CTGAAGCTGCGGAGTGGAG 60.447 63.158 5.62 0.00 39.42 3.86
2618 3105 2.164865 CTGAAGCTGCGGAGTGGAGT 62.165 60.000 5.62 0.00 38.50 3.85
2619 3106 1.739562 GAAGCTGCGGAGTGGAGTG 60.740 63.158 5.62 0.00 38.50 3.51
2620 3107 3.245668 AAGCTGCGGAGTGGAGTGG 62.246 63.158 5.62 0.00 38.50 4.00
2621 3108 4.008933 GCTGCGGAGTGGAGTGGT 62.009 66.667 5.62 0.00 38.50 4.16
2622 3109 2.047844 CTGCGGAGTGGAGTGGTG 60.048 66.667 0.00 0.00 0.00 4.17
2623 3110 4.314440 TGCGGAGTGGAGTGGTGC 62.314 66.667 0.00 0.00 0.00 5.01
2625 3112 3.625897 CGGAGTGGAGTGGTGCCA 61.626 66.667 0.00 0.00 0.00 4.92
2626 3113 2.959484 CGGAGTGGAGTGGTGCCAT 61.959 63.158 0.00 0.00 37.81 4.40
2627 3114 1.377725 GGAGTGGAGTGGTGCCATG 60.378 63.158 0.00 0.00 37.81 3.66
2628 3115 2.034687 AGTGGAGTGGTGCCATGC 59.965 61.111 0.00 0.00 37.81 4.06
2629 3116 2.282391 GTGGAGTGGTGCCATGCA 60.282 61.111 0.00 0.00 37.81 3.96
2630 3117 1.679977 GTGGAGTGGTGCCATGCAT 60.680 57.895 0.00 0.00 41.91 3.96
2631 3118 1.679641 TGGAGTGGTGCCATGCATG 60.680 57.895 20.19 20.19 41.91 4.06
2632 3119 1.378911 GGAGTGGTGCCATGCATGA 60.379 57.895 28.31 6.08 41.91 3.07
2633 3120 0.966875 GGAGTGGTGCCATGCATGAA 60.967 55.000 28.31 12.90 41.91 2.57
2634 3121 0.454600 GAGTGGTGCCATGCATGAAG 59.545 55.000 28.31 13.23 41.91 3.02
2635 3122 1.153706 GTGGTGCCATGCATGAAGC 60.154 57.895 28.31 22.48 41.91 3.86
2645 3132 3.165606 GCATGAAGCAGGCTACACT 57.834 52.632 0.00 0.00 44.79 3.55
2646 3133 1.012841 GCATGAAGCAGGCTACACTC 58.987 55.000 0.00 0.00 44.79 3.51
2647 3134 1.676916 GCATGAAGCAGGCTACACTCA 60.677 52.381 0.00 0.00 44.79 3.41
2648 3135 2.703416 CATGAAGCAGGCTACACTCAA 58.297 47.619 0.00 0.00 0.00 3.02
2649 3136 2.462456 TGAAGCAGGCTACACTCAAG 57.538 50.000 0.00 0.00 0.00 3.02
2650 3137 1.970640 TGAAGCAGGCTACACTCAAGA 59.029 47.619 0.00 0.00 0.00 3.02
2651 3138 2.568956 TGAAGCAGGCTACACTCAAGAT 59.431 45.455 0.00 0.00 0.00 2.40
2652 3139 3.008375 TGAAGCAGGCTACACTCAAGATT 59.992 43.478 0.00 0.00 0.00 2.40
2653 3140 3.258971 AGCAGGCTACACTCAAGATTC 57.741 47.619 0.00 0.00 0.00 2.52
2654 3141 2.568956 AGCAGGCTACACTCAAGATTCA 59.431 45.455 0.00 0.00 0.00 2.57
2655 3142 3.199508 AGCAGGCTACACTCAAGATTCAT 59.800 43.478 0.00 0.00 0.00 2.57
2656 3143 3.559242 GCAGGCTACACTCAAGATTCATC 59.441 47.826 0.00 0.00 0.00 2.92
2657 3144 4.763073 CAGGCTACACTCAAGATTCATCA 58.237 43.478 0.00 0.00 0.00 3.07
2658 3145 5.181009 CAGGCTACACTCAAGATTCATCAA 58.819 41.667 0.00 0.00 0.00 2.57
2659 3146 5.821470 CAGGCTACACTCAAGATTCATCAAT 59.179 40.000 0.00 0.00 0.00 2.57
2660 3147 6.988580 CAGGCTACACTCAAGATTCATCAATA 59.011 38.462 0.00 0.00 0.00 1.90
2661 3148 6.989169 AGGCTACACTCAAGATTCATCAATAC 59.011 38.462 0.00 0.00 0.00 1.89
2662 3149 6.989169 GGCTACACTCAAGATTCATCAATACT 59.011 38.462 0.00 0.00 0.00 2.12
2663 3150 7.042187 GGCTACACTCAAGATTCATCAATACTG 60.042 40.741 0.00 0.00 0.00 2.74
2664 3151 6.674694 ACACTCAAGATTCATCAATACTGC 57.325 37.500 0.00 0.00 0.00 4.40
2665 3152 6.413052 ACACTCAAGATTCATCAATACTGCT 58.587 36.000 0.00 0.00 0.00 4.24
2666 3153 6.315642 ACACTCAAGATTCATCAATACTGCTG 59.684 38.462 0.00 0.00 0.00 4.41
2667 3154 5.296283 ACTCAAGATTCATCAATACTGCTGC 59.704 40.000 0.00 0.00 0.00 5.25
2668 3155 4.577693 TCAAGATTCATCAATACTGCTGCC 59.422 41.667 0.00 0.00 0.00 4.85
2669 3156 3.484407 AGATTCATCAATACTGCTGCCC 58.516 45.455 0.00 0.00 0.00 5.36
2670 3157 3.137913 AGATTCATCAATACTGCTGCCCT 59.862 43.478 0.00 0.00 0.00 5.19
2671 3158 4.349048 AGATTCATCAATACTGCTGCCCTA 59.651 41.667 0.00 0.00 0.00 3.53
2672 3159 3.758755 TCATCAATACTGCTGCCCTAG 57.241 47.619 0.00 0.00 0.00 3.02
2673 3160 3.041211 TCATCAATACTGCTGCCCTAGT 58.959 45.455 0.00 0.00 0.00 2.57
2674 3161 3.455910 TCATCAATACTGCTGCCCTAGTT 59.544 43.478 0.00 0.00 0.00 2.24
2675 3162 4.653801 TCATCAATACTGCTGCCCTAGTTA 59.346 41.667 0.00 0.00 0.00 2.24
2676 3163 4.402056 TCAATACTGCTGCCCTAGTTAC 57.598 45.455 0.00 0.00 0.00 2.50
2677 3164 3.772572 TCAATACTGCTGCCCTAGTTACA 59.227 43.478 0.00 0.00 0.00 2.41
2678 3165 4.408921 TCAATACTGCTGCCCTAGTTACAT 59.591 41.667 0.00 0.00 0.00 2.29
2679 3166 2.990066 ACTGCTGCCCTAGTTACATC 57.010 50.000 0.00 0.00 0.00 3.06
2680 3167 2.187958 ACTGCTGCCCTAGTTACATCA 58.812 47.619 0.00 0.00 0.00 3.07
2681 3168 2.571653 ACTGCTGCCCTAGTTACATCAA 59.428 45.455 0.00 0.00 0.00 2.57
2682 3169 3.200825 ACTGCTGCCCTAGTTACATCAAT 59.799 43.478 0.00 0.00 0.00 2.57
2683 3170 4.408921 ACTGCTGCCCTAGTTACATCAATA 59.591 41.667 0.00 0.00 0.00 1.90
2684 3171 5.104527 ACTGCTGCCCTAGTTACATCAATAA 60.105 40.000 0.00 0.00 0.00 1.40
2685 3172 5.750524 TGCTGCCCTAGTTACATCAATAAA 58.249 37.500 0.00 0.00 0.00 1.40
2686 3173 5.588648 TGCTGCCCTAGTTACATCAATAAAC 59.411 40.000 0.00 0.00 0.00 2.01
2687 3174 5.588648 GCTGCCCTAGTTACATCAATAAACA 59.411 40.000 0.00 0.00 0.00 2.83
2688 3175 6.094881 GCTGCCCTAGTTACATCAATAAACAA 59.905 38.462 0.00 0.00 0.00 2.83
2689 3176 7.385778 TGCCCTAGTTACATCAATAAACAAC 57.614 36.000 0.00 0.00 0.00 3.32
2690 3177 6.943146 TGCCCTAGTTACATCAATAAACAACA 59.057 34.615 0.00 0.00 0.00 3.33
2691 3178 7.094549 TGCCCTAGTTACATCAATAAACAACAC 60.095 37.037 0.00 0.00 0.00 3.32
2692 3179 7.094549 GCCCTAGTTACATCAATAAACAACACA 60.095 37.037 0.00 0.00 0.00 3.72
2693 3180 8.956426 CCCTAGTTACATCAATAAACAACACAT 58.044 33.333 0.00 0.00 0.00 3.21
2694 3181 9.988350 CCTAGTTACATCAATAAACAACACATC 57.012 33.333 0.00 0.00 0.00 3.06
2695 3182 9.689075 CTAGTTACATCAATAAACAACACATCG 57.311 33.333 0.00 0.00 0.00 3.84
2696 3183 8.317891 AGTTACATCAATAAACAACACATCGA 57.682 30.769 0.00 0.00 0.00 3.59
2697 3184 8.946085 AGTTACATCAATAAACAACACATCGAT 58.054 29.630 0.00 0.00 0.00 3.59
2698 3185 9.210426 GTTACATCAATAAACAACACATCGATC 57.790 33.333 0.00 0.00 0.00 3.69
2699 3186 6.477742 ACATCAATAAACAACACATCGATCG 58.522 36.000 9.36 9.36 0.00 3.69
2700 3187 6.312672 ACATCAATAAACAACACATCGATCGA 59.687 34.615 21.86 21.86 0.00 3.59
2701 3188 6.902224 TCAATAAACAACACATCGATCGAT 57.098 33.333 24.60 24.60 34.81 3.59
2702 3189 6.933130 TCAATAAACAACACATCGATCGATC 58.067 36.000 27.20 15.68 31.62 3.69
2703 3190 6.756542 TCAATAAACAACACATCGATCGATCT 59.243 34.615 27.20 14.09 31.62 2.75
2704 3191 6.755461 ATAAACAACACATCGATCGATCTC 57.245 37.500 27.20 0.00 31.62 2.75
2705 3192 3.782889 ACAACACATCGATCGATCTCA 57.217 42.857 27.20 9.86 31.62 3.27
2706 3193 3.439293 ACAACACATCGATCGATCTCAC 58.561 45.455 27.20 0.00 31.62 3.51
2707 3194 3.129462 ACAACACATCGATCGATCTCACT 59.871 43.478 27.20 4.02 31.62 3.41
2708 3195 4.335594 ACAACACATCGATCGATCTCACTA 59.664 41.667 27.20 0.00 31.62 2.74
2709 3196 5.163652 ACAACACATCGATCGATCTCACTAA 60.164 40.000 27.20 0.00 31.62 2.24
2710 3197 5.697473 ACACATCGATCGATCTCACTAAT 57.303 39.130 27.20 1.58 31.62 1.73
2711 3198 6.078202 ACACATCGATCGATCTCACTAATT 57.922 37.500 27.20 0.76 31.62 1.40
2712 3199 6.507900 ACACATCGATCGATCTCACTAATTT 58.492 36.000 27.20 0.19 31.62 1.82
2713 3200 6.638873 ACACATCGATCGATCTCACTAATTTC 59.361 38.462 27.20 0.00 31.62 2.17
2714 3201 6.638468 CACATCGATCGATCTCACTAATTTCA 59.362 38.462 27.20 0.00 31.62 2.69
2715 3202 6.860539 ACATCGATCGATCTCACTAATTTCAG 59.139 38.462 27.20 13.18 31.62 3.02
2716 3203 6.619801 TCGATCGATCTCACTAATTTCAGA 57.380 37.500 22.43 5.40 0.00 3.27
2717 3204 6.431278 TCGATCGATCTCACTAATTTCAGAC 58.569 40.000 22.43 0.00 0.00 3.51
2718 3205 5.627367 CGATCGATCTCACTAATTTCAGACC 59.373 44.000 22.43 0.00 0.00 3.85
2719 3206 5.914898 TCGATCTCACTAATTTCAGACCA 57.085 39.130 0.00 0.00 0.00 4.02
2720 3207 6.471233 TCGATCTCACTAATTTCAGACCAT 57.529 37.500 0.00 0.00 0.00 3.55
2721 3208 7.582667 TCGATCTCACTAATTTCAGACCATA 57.417 36.000 0.00 0.00 0.00 2.74
2722 3209 7.652727 TCGATCTCACTAATTTCAGACCATAG 58.347 38.462 0.00 0.00 0.00 2.23
2723 3210 7.285629 TCGATCTCACTAATTTCAGACCATAGT 59.714 37.037 0.00 0.00 0.00 2.12
2724 3211 7.593273 CGATCTCACTAATTTCAGACCATAGTC 59.407 40.741 0.00 0.00 43.89 2.59
2725 3212 7.113658 TCTCACTAATTTCAGACCATAGTCC 57.886 40.000 0.00 0.00 44.72 3.85
2726 3213 6.667848 TCTCACTAATTTCAGACCATAGTCCA 59.332 38.462 0.00 0.00 44.72 4.02
2727 3214 7.345653 TCTCACTAATTTCAGACCATAGTCCAT 59.654 37.037 0.00 0.00 44.72 3.41
2728 3215 7.275183 TCACTAATTTCAGACCATAGTCCATG 58.725 38.462 0.00 0.00 44.72 3.66
2729 3216 6.017605 CACTAATTTCAGACCATAGTCCATGC 60.018 42.308 0.00 0.00 44.72 4.06
2730 3217 3.998913 TTTCAGACCATAGTCCATGCA 57.001 42.857 0.00 0.00 44.72 3.96
2731 3218 4.508551 TTTCAGACCATAGTCCATGCAT 57.491 40.909 0.00 0.00 44.72 3.96
2732 3219 4.508551 TTCAGACCATAGTCCATGCATT 57.491 40.909 0.00 0.00 44.72 3.56
2733 3220 4.508551 TCAGACCATAGTCCATGCATTT 57.491 40.909 0.00 0.00 44.72 2.32
2734 3221 4.454678 TCAGACCATAGTCCATGCATTTC 58.545 43.478 0.00 0.00 44.72 2.17
2735 3222 4.080413 TCAGACCATAGTCCATGCATTTCA 60.080 41.667 0.00 0.00 44.72 2.69
2736 3223 4.641541 CAGACCATAGTCCATGCATTTCAA 59.358 41.667 0.00 0.00 44.72 2.69
2737 3224 4.641989 AGACCATAGTCCATGCATTTCAAC 59.358 41.667 0.00 0.00 44.72 3.18
2738 3225 4.343231 ACCATAGTCCATGCATTTCAACA 58.657 39.130 0.00 0.00 32.84 3.33
2739 3226 4.400251 ACCATAGTCCATGCATTTCAACAG 59.600 41.667 0.00 0.00 32.84 3.16
2740 3227 4.202080 CCATAGTCCATGCATTTCAACAGG 60.202 45.833 0.00 0.00 32.84 4.00
2741 3228 2.880443 AGTCCATGCATTTCAACAGGT 58.120 42.857 0.00 0.00 0.00 4.00
2742 3229 2.821969 AGTCCATGCATTTCAACAGGTC 59.178 45.455 0.00 0.00 0.00 3.85
2743 3230 2.094545 GTCCATGCATTTCAACAGGTCC 60.095 50.000 0.00 0.00 0.00 4.46
2744 3231 1.894466 CCATGCATTTCAACAGGTCCA 59.106 47.619 0.00 0.00 0.00 4.02
2745 3232 2.498481 CCATGCATTTCAACAGGTCCAT 59.502 45.455 0.00 0.00 0.00 3.41
2746 3233 3.055675 CCATGCATTTCAACAGGTCCATT 60.056 43.478 0.00 0.00 0.00 3.16
2747 3234 4.563993 CCATGCATTTCAACAGGTCCATTT 60.564 41.667 0.00 0.00 0.00 2.32
2748 3235 4.686191 TGCATTTCAACAGGTCCATTTT 57.314 36.364 0.00 0.00 0.00 1.82
2749 3236 4.630111 TGCATTTCAACAGGTCCATTTTC 58.370 39.130 0.00 0.00 0.00 2.29
2750 3237 4.100653 TGCATTTCAACAGGTCCATTTTCA 59.899 37.500 0.00 0.00 0.00 2.69
2751 3238 4.448732 GCATTTCAACAGGTCCATTTTCAC 59.551 41.667 0.00 0.00 0.00 3.18
2752 3239 5.599732 CATTTCAACAGGTCCATTTTCACA 58.400 37.500 0.00 0.00 0.00 3.58
2753 3240 4.647424 TTCAACAGGTCCATTTTCACAC 57.353 40.909 0.00 0.00 0.00 3.82
2754 3241 3.625853 TCAACAGGTCCATTTTCACACA 58.374 40.909 0.00 0.00 0.00 3.72
2755 3242 4.019858 TCAACAGGTCCATTTTCACACAA 58.980 39.130 0.00 0.00 0.00 3.33
2756 3243 4.097741 TCAACAGGTCCATTTTCACACAAG 59.902 41.667 0.00 0.00 0.00 3.16
2757 3244 2.362077 ACAGGTCCATTTTCACACAAGC 59.638 45.455 0.00 0.00 0.00 4.01
2758 3245 2.361757 CAGGTCCATTTTCACACAAGCA 59.638 45.455 0.00 0.00 0.00 3.91
2759 3246 3.030291 AGGTCCATTTTCACACAAGCAA 58.970 40.909 0.00 0.00 0.00 3.91
2760 3247 3.450457 AGGTCCATTTTCACACAAGCAAA 59.550 39.130 0.00 0.00 0.00 3.68
2761 3248 4.081198 AGGTCCATTTTCACACAAGCAAAA 60.081 37.500 0.00 0.00 0.00 2.44
2762 3249 4.633565 GGTCCATTTTCACACAAGCAAAAA 59.366 37.500 0.00 0.00 0.00 1.94
2795 3282 3.902881 AAAAACAATGTGGCTCCAACA 57.097 38.095 0.00 0.00 0.00 3.33
2796 3283 3.902881 AAAACAATGTGGCTCCAACAA 57.097 38.095 0.00 0.00 0.00 2.83
2797 3284 3.902881 AAACAATGTGGCTCCAACAAA 57.097 38.095 0.00 0.00 0.00 2.83
2798 3285 3.902881 AACAATGTGGCTCCAACAAAA 57.097 38.095 0.00 0.00 0.00 2.44
2799 3286 3.902881 ACAATGTGGCTCCAACAAAAA 57.097 38.095 0.00 0.00 0.00 1.94
2822 3309 9.715121 AAAAACACATAATTCATGATTTGAGCT 57.285 25.926 12.10 0.00 38.10 4.09
2823 3310 9.715121 AAAACACATAATTCATGATTTGAGCTT 57.285 25.926 12.10 0.00 38.10 3.74
2824 3311 8.697846 AACACATAATTCATGATTTGAGCTTG 57.302 30.769 12.10 5.75 38.10 4.01
2825 3312 7.262772 ACACATAATTCATGATTTGAGCTTGG 58.737 34.615 12.10 0.50 38.10 3.61
2826 3313 6.700081 CACATAATTCATGATTTGAGCTTGGG 59.300 38.462 12.10 1.76 38.10 4.12
2827 3314 6.381994 ACATAATTCATGATTTGAGCTTGGGT 59.618 34.615 12.10 0.00 38.10 4.51
2828 3315 4.730949 ATTCATGATTTGAGCTTGGGTG 57.269 40.909 0.00 0.00 35.27 4.61
2829 3316 3.159213 TCATGATTTGAGCTTGGGTGT 57.841 42.857 0.00 0.00 0.00 4.16
2830 3317 4.299586 TCATGATTTGAGCTTGGGTGTA 57.700 40.909 0.00 0.00 0.00 2.90
2831 3318 4.661222 TCATGATTTGAGCTTGGGTGTAA 58.339 39.130 0.00 0.00 0.00 2.41
2832 3319 4.458989 TCATGATTTGAGCTTGGGTGTAAC 59.541 41.667 0.00 0.00 0.00 2.50
2833 3320 3.826524 TGATTTGAGCTTGGGTGTAACA 58.173 40.909 0.00 0.00 39.98 2.41
2834 3321 4.211125 TGATTTGAGCTTGGGTGTAACAA 58.789 39.130 0.00 0.00 39.98 2.83
2835 3322 4.646945 TGATTTGAGCTTGGGTGTAACAAA 59.353 37.500 0.00 0.00 39.98 2.83
2836 3323 5.127845 TGATTTGAGCTTGGGTGTAACAAAA 59.872 36.000 0.00 0.00 39.98 2.44
2837 3324 5.407407 TTTGAGCTTGGGTGTAACAAAAA 57.593 34.783 0.00 0.00 39.98 1.94
2838 3325 4.379339 TGAGCTTGGGTGTAACAAAAAC 57.621 40.909 0.00 0.00 39.98 2.43
2839 3326 3.131400 TGAGCTTGGGTGTAACAAAAACC 59.869 43.478 0.00 0.00 39.98 3.27
2840 3327 3.100671 AGCTTGGGTGTAACAAAAACCA 58.899 40.909 0.00 0.00 39.98 3.67
2841 3328 3.118920 AGCTTGGGTGTAACAAAAACCAC 60.119 43.478 0.00 0.00 39.98 4.16
2842 3329 3.368531 GCTTGGGTGTAACAAAAACCACA 60.369 43.478 0.00 0.00 39.98 4.17
2843 3330 3.870633 TGGGTGTAACAAAAACCACAC 57.129 42.857 0.00 0.00 39.98 3.82
2844 3331 3.162666 TGGGTGTAACAAAAACCACACA 58.837 40.909 6.10 0.00 42.40 3.72
2845 3332 3.769844 TGGGTGTAACAAAAACCACACAT 59.230 39.130 6.10 0.00 42.40 3.21
2846 3333 4.116238 GGGTGTAACAAAAACCACACATG 58.884 43.478 6.10 0.00 42.40 3.21
2847 3334 4.142138 GGGTGTAACAAAAACCACACATGA 60.142 41.667 0.00 0.00 42.40 3.07
2848 3335 4.801516 GGTGTAACAAAAACCACACATGAC 59.198 41.667 0.00 0.00 42.40 3.06
2849 3336 4.801516 GTGTAACAAAAACCACACATGACC 59.198 41.667 0.00 0.00 40.74 4.02
2850 3337 4.707448 TGTAACAAAAACCACACATGACCT 59.293 37.500 0.00 0.00 0.00 3.85
2851 3338 5.886474 TGTAACAAAAACCACACATGACCTA 59.114 36.000 0.00 0.00 0.00 3.08
2852 3339 4.911514 ACAAAAACCACACATGACCTAC 57.088 40.909 0.00 0.00 0.00 3.18
2853 3340 4.274147 ACAAAAACCACACATGACCTACA 58.726 39.130 0.00 0.00 0.00 2.74
2854 3341 4.707448 ACAAAAACCACACATGACCTACAA 59.293 37.500 0.00 0.00 0.00 2.41
2855 3342 5.163561 ACAAAAACCACACATGACCTACAAG 60.164 40.000 0.00 0.00 0.00 3.16
2856 3343 3.857157 AACCACACATGACCTACAAGT 57.143 42.857 0.00 0.00 0.00 3.16
2857 3344 3.402628 ACCACACATGACCTACAAGTC 57.597 47.619 0.00 0.00 37.28 3.01
2858 3345 2.288825 ACCACACATGACCTACAAGTCG 60.289 50.000 0.00 0.00 39.77 4.18
2859 3346 2.288825 CCACACATGACCTACAAGTCGT 60.289 50.000 0.00 0.00 39.77 4.34
2860 3347 3.390135 CACACATGACCTACAAGTCGTT 58.610 45.455 0.00 0.00 39.77 3.85
2861 3348 3.428870 CACACATGACCTACAAGTCGTTC 59.571 47.826 0.00 0.00 39.77 3.95
2862 3349 2.661675 CACATGACCTACAAGTCGTTCG 59.338 50.000 0.00 0.00 39.77 3.95
2863 3350 2.555325 ACATGACCTACAAGTCGTTCGA 59.445 45.455 0.00 0.00 39.77 3.71
2864 3351 3.005050 ACATGACCTACAAGTCGTTCGAA 59.995 43.478 0.00 0.00 39.77 3.71
2865 3352 3.928727 TGACCTACAAGTCGTTCGAAT 57.071 42.857 0.00 0.00 39.77 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.558359 GCTCCAAGTGCATTACCAAACT 59.442 45.455 0.00 0.00 0.00 2.66
79 80 3.211045 GGTCACACACAGGTACACAAAT 58.789 45.455 0.00 0.00 0.00 2.32
87 88 0.986019 TCCCTTGGTCACACACAGGT 60.986 55.000 0.00 0.00 0.00 4.00
142 143 1.411977 CCAATCAACCACACCAAGCAA 59.588 47.619 0.00 0.00 0.00 3.91
370 373 2.823959 TCCAGGACCGTTGGTATAACT 58.176 47.619 0.00 0.00 35.25 2.24
398 401 9.458727 AGCATTAATAATTCGATCTGAATGGAT 57.541 29.630 11.71 7.42 46.65 3.41
622 882 3.829026 ACTCTAGTTCAGCATGTCTCACA 59.171 43.478 0.00 0.00 37.40 3.58
881 1150 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
882 1151 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
883 1152 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
884 1153 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
885 1154 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
886 1155 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
887 1156 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
888 1157 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
889 1158 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
890 1159 2.106477 ATCACACACACACACACACA 57.894 45.000 0.00 0.00 0.00 3.72
891 1160 4.811555 AATATCACACACACACACACAC 57.188 40.909 0.00 0.00 0.00 3.82
892 1161 4.752604 GGTAATATCACACACACACACACA 59.247 41.667 0.00 0.00 0.00 3.72
893 1162 4.143200 CGGTAATATCACACACACACACAC 60.143 45.833 0.00 0.00 0.00 3.82
894 1163 3.991121 CGGTAATATCACACACACACACA 59.009 43.478 0.00 0.00 0.00 3.72
895 1164 3.991773 ACGGTAATATCACACACACACAC 59.008 43.478 0.00 0.00 0.00 3.82
896 1165 3.991121 CACGGTAATATCACACACACACA 59.009 43.478 0.00 0.00 0.00 3.72
897 1166 3.181524 GCACGGTAATATCACACACACAC 60.182 47.826 0.00 0.00 0.00 3.82
898 1167 2.997303 GCACGGTAATATCACACACACA 59.003 45.455 0.00 0.00 0.00 3.72
916 1204 8.795786 TGTAAATTGAAACACAAAGATAGCAC 57.204 30.769 0.00 0.00 42.03 4.40
921 1209 8.836268 ATGCATGTAAATTGAAACACAAAGAT 57.164 26.923 0.00 0.00 42.03 2.40
1049 1338 6.539826 CAGTAGTGCAATGTCCATTTCATCTA 59.460 38.462 0.00 0.00 0.00 1.98
1147 1443 7.764443 GCACTTCTCACTCACATTACCTATAAA 59.236 37.037 0.00 0.00 0.00 1.40
1162 1458 2.158769 TGGTCACATTGCACTTCTCACT 60.159 45.455 0.00 0.00 0.00 3.41
1315 1611 8.139350 TCTTACCGTGACATATTTAATCGACAT 58.861 33.333 0.00 0.00 0.00 3.06
1426 1759 2.579410 TCCCACTTTCTTGTTAGCCC 57.421 50.000 0.00 0.00 0.00 5.19
1539 1872 9.802039 TTCCATAGTTGGTTCTACAATAGTTTT 57.198 29.630 0.00 0.00 44.06 2.43
1629 1964 2.092375 AGCCTTTCATAGCCCCAAGTAC 60.092 50.000 0.00 0.00 0.00 2.73
1663 1998 5.241728 GGTAAAGGCTCAAGTGACTTCAAAT 59.758 40.000 0.00 0.00 0.00 2.32
1856 2191 6.586344 TCAAGAGCCATTCTACTATTCCAAG 58.414 40.000 0.00 0.00 34.14 3.61
2022 2357 5.393461 GCATATTATGATAGCCTTGCCAACC 60.393 44.000 7.87 0.00 0.00 3.77
2524 3011 9.609346 TTTTTCTTCTAAAACTACAGCTGTACT 57.391 29.630 22.67 11.21 0.00 2.73
2548 3035 9.638239 CATAGTGGTGCATTTGTATTTAGTTTT 57.362 29.630 0.00 0.00 0.00 2.43
2549 3036 7.759433 GCATAGTGGTGCATTTGTATTTAGTTT 59.241 33.333 0.00 0.00 44.43 2.66
2550 3037 7.257722 GCATAGTGGTGCATTTGTATTTAGTT 58.742 34.615 0.00 0.00 44.43 2.24
2551 3038 6.795399 GCATAGTGGTGCATTTGTATTTAGT 58.205 36.000 0.00 0.00 44.43 2.24
2564 3051 1.675310 TGCTGGTGCATAGTGGTGC 60.675 57.895 0.00 0.00 45.31 5.01
2565 3052 4.720127 TGCTGGTGCATAGTGGTG 57.280 55.556 0.00 0.00 45.31 4.17
2574 3061 1.725164 GTTACTCGTAGTTGCTGGTGC 59.275 52.381 0.00 0.00 40.20 5.01
2575 3062 3.021269 TGTTACTCGTAGTTGCTGGTG 57.979 47.619 0.00 0.00 0.00 4.17
2576 3063 3.738830 TTGTTACTCGTAGTTGCTGGT 57.261 42.857 0.00 0.00 0.00 4.00
2577 3064 3.120649 GCTTTGTTACTCGTAGTTGCTGG 60.121 47.826 0.00 0.00 0.00 4.85
2578 3065 3.741344 AGCTTTGTTACTCGTAGTTGCTG 59.259 43.478 0.00 0.00 0.00 4.41
2579 3066 3.741344 CAGCTTTGTTACTCGTAGTTGCT 59.259 43.478 0.00 0.00 0.00 3.91
2580 3067 3.739300 TCAGCTTTGTTACTCGTAGTTGC 59.261 43.478 0.00 0.00 0.00 4.17
2581 3068 5.612709 GCTTCAGCTTTGTTACTCGTAGTTG 60.613 44.000 0.00 0.00 38.21 3.16
2582 3069 4.448060 GCTTCAGCTTTGTTACTCGTAGTT 59.552 41.667 0.00 0.00 38.21 2.24
2583 3070 3.988517 GCTTCAGCTTTGTTACTCGTAGT 59.011 43.478 0.00 0.00 38.21 2.73
2584 3071 4.569801 GCTTCAGCTTTGTTACTCGTAG 57.430 45.455 0.00 0.00 38.21 3.51
2598 3085 3.123620 CCACTCCGCAGCTTCAGC 61.124 66.667 0.00 0.00 42.49 4.26
2599 3086 1.447489 CTCCACTCCGCAGCTTCAG 60.447 63.158 0.00 0.00 0.00 3.02
2600 3087 2.210013 ACTCCACTCCGCAGCTTCA 61.210 57.895 0.00 0.00 0.00 3.02
2601 3088 1.739562 CACTCCACTCCGCAGCTTC 60.740 63.158 0.00 0.00 0.00 3.86
2602 3089 2.345244 CACTCCACTCCGCAGCTT 59.655 61.111 0.00 0.00 0.00 3.74
2603 3090 3.699894 CCACTCCACTCCGCAGCT 61.700 66.667 0.00 0.00 0.00 4.24
2604 3091 4.008933 ACCACTCCACTCCGCAGC 62.009 66.667 0.00 0.00 0.00 5.25
2605 3092 2.047844 CACCACTCCACTCCGCAG 60.048 66.667 0.00 0.00 0.00 5.18
2606 3093 4.314440 GCACCACTCCACTCCGCA 62.314 66.667 0.00 0.00 0.00 5.69
2608 3095 2.959484 ATGGCACCACTCCACTCCG 61.959 63.158 0.00 0.00 36.26 4.63
2609 3096 1.377725 CATGGCACCACTCCACTCC 60.378 63.158 0.00 0.00 36.26 3.85
2610 3097 2.042831 GCATGGCACCACTCCACTC 61.043 63.158 0.00 0.00 36.26 3.51
2611 3098 2.034687 GCATGGCACCACTCCACT 59.965 61.111 0.00 0.00 36.26 4.00
2612 3099 1.679977 ATGCATGGCACCACTCCAC 60.680 57.895 0.00 0.00 43.04 4.02
2613 3100 1.679641 CATGCATGGCACCACTCCA 60.680 57.895 19.40 0.00 43.04 3.86
2614 3101 0.966875 TTCATGCATGGCACCACTCC 60.967 55.000 25.97 0.00 43.04 3.85
2615 3102 0.454600 CTTCATGCATGGCACCACTC 59.545 55.000 25.97 0.00 43.04 3.51
2616 3103 1.601419 GCTTCATGCATGGCACCACT 61.601 55.000 25.97 0.00 43.04 4.00
2617 3104 1.153706 GCTTCATGCATGGCACCAC 60.154 57.895 25.97 7.02 43.04 4.16
2618 3105 3.290567 GCTTCATGCATGGCACCA 58.709 55.556 25.97 3.72 43.04 4.17
2627 3114 1.012841 GAGTGTAGCCTGCTTCATGC 58.987 55.000 0.00 0.00 43.25 4.06
2628 3115 2.391616 TGAGTGTAGCCTGCTTCATG 57.608 50.000 0.00 0.00 0.00 3.07
2629 3116 2.568956 TCTTGAGTGTAGCCTGCTTCAT 59.431 45.455 0.00 0.00 0.00 2.57
2630 3117 1.970640 TCTTGAGTGTAGCCTGCTTCA 59.029 47.619 0.00 0.00 0.00 3.02
2631 3118 2.751166 TCTTGAGTGTAGCCTGCTTC 57.249 50.000 0.00 0.00 0.00 3.86
2632 3119 3.008375 TGAATCTTGAGTGTAGCCTGCTT 59.992 43.478 0.00 0.00 0.00 3.91
2633 3120 2.568956 TGAATCTTGAGTGTAGCCTGCT 59.431 45.455 0.00 0.00 0.00 4.24
2634 3121 2.977914 TGAATCTTGAGTGTAGCCTGC 58.022 47.619 0.00 0.00 0.00 4.85
2635 3122 4.763073 TGATGAATCTTGAGTGTAGCCTG 58.237 43.478 0.00 0.00 0.00 4.85
2636 3123 5.426689 TTGATGAATCTTGAGTGTAGCCT 57.573 39.130 0.00 0.00 0.00 4.58
2637 3124 6.989169 AGTATTGATGAATCTTGAGTGTAGCC 59.011 38.462 0.00 0.00 0.00 3.93
2638 3125 7.518052 GCAGTATTGATGAATCTTGAGTGTAGC 60.518 40.741 0.00 0.00 0.00 3.58
2639 3126 7.710044 AGCAGTATTGATGAATCTTGAGTGTAG 59.290 37.037 0.00 0.00 0.00 2.74
2640 3127 7.493645 CAGCAGTATTGATGAATCTTGAGTGTA 59.506 37.037 0.00 0.00 43.30 2.90
2641 3128 6.315642 CAGCAGTATTGATGAATCTTGAGTGT 59.684 38.462 0.00 0.00 43.30 3.55
2642 3129 6.716438 CAGCAGTATTGATGAATCTTGAGTG 58.284 40.000 0.00 0.00 43.30 3.51
2643 3130 5.296283 GCAGCAGTATTGATGAATCTTGAGT 59.704 40.000 7.76 0.00 43.30 3.41
2644 3131 5.277876 GGCAGCAGTATTGATGAATCTTGAG 60.278 44.000 7.76 0.00 43.30 3.02
2645 3132 4.577693 GGCAGCAGTATTGATGAATCTTGA 59.422 41.667 7.76 0.00 43.30 3.02
2646 3133 4.261489 GGGCAGCAGTATTGATGAATCTTG 60.261 45.833 7.76 0.00 43.30 3.02
2647 3134 3.887716 GGGCAGCAGTATTGATGAATCTT 59.112 43.478 7.76 0.00 43.30 2.40
2648 3135 3.137913 AGGGCAGCAGTATTGATGAATCT 59.862 43.478 7.76 0.00 43.30 2.40
2649 3136 3.484407 AGGGCAGCAGTATTGATGAATC 58.516 45.455 7.76 0.00 43.30 2.52
2650 3137 3.589951 AGGGCAGCAGTATTGATGAAT 57.410 42.857 7.76 0.00 43.30 2.57
2651 3138 3.455910 ACTAGGGCAGCAGTATTGATGAA 59.544 43.478 7.76 0.00 43.30 2.57
2652 3139 3.041211 ACTAGGGCAGCAGTATTGATGA 58.959 45.455 7.76 0.00 43.30 2.92
2653 3140 3.482156 ACTAGGGCAGCAGTATTGATG 57.518 47.619 0.00 0.00 43.47 3.07
2654 3141 4.408921 TGTAACTAGGGCAGCAGTATTGAT 59.591 41.667 0.00 0.00 0.00 2.57
2655 3142 3.772572 TGTAACTAGGGCAGCAGTATTGA 59.227 43.478 0.00 0.00 0.00 2.57
2656 3143 4.137116 TGTAACTAGGGCAGCAGTATTG 57.863 45.455 0.00 0.00 0.00 1.90
2657 3144 4.408921 TGATGTAACTAGGGCAGCAGTATT 59.591 41.667 0.00 0.00 0.00 1.89
2658 3145 3.967326 TGATGTAACTAGGGCAGCAGTAT 59.033 43.478 0.00 0.00 0.00 2.12
2659 3146 3.371034 TGATGTAACTAGGGCAGCAGTA 58.629 45.455 0.00 0.00 0.00 2.74
2660 3147 2.187958 TGATGTAACTAGGGCAGCAGT 58.812 47.619 0.00 0.00 0.00 4.40
2661 3148 2.988010 TGATGTAACTAGGGCAGCAG 57.012 50.000 0.00 0.00 0.00 4.24
2662 3149 3.931907 ATTGATGTAACTAGGGCAGCA 57.068 42.857 0.00 0.00 0.00 4.41
2663 3150 5.588648 TGTTTATTGATGTAACTAGGGCAGC 59.411 40.000 0.00 0.00 0.00 5.25
2664 3151 7.120579 TGTTGTTTATTGATGTAACTAGGGCAG 59.879 37.037 0.00 0.00 0.00 4.85
2665 3152 6.943146 TGTTGTTTATTGATGTAACTAGGGCA 59.057 34.615 0.00 0.00 0.00 5.36
2666 3153 7.094549 TGTGTTGTTTATTGATGTAACTAGGGC 60.095 37.037 0.00 0.00 0.00 5.19
2667 3154 8.330466 TGTGTTGTTTATTGATGTAACTAGGG 57.670 34.615 0.00 0.00 0.00 3.53
2668 3155 9.988350 GATGTGTTGTTTATTGATGTAACTAGG 57.012 33.333 0.00 0.00 0.00 3.02
2669 3156 9.689075 CGATGTGTTGTTTATTGATGTAACTAG 57.311 33.333 0.00 0.00 0.00 2.57
2670 3157 9.425577 TCGATGTGTTGTTTATTGATGTAACTA 57.574 29.630 0.00 0.00 0.00 2.24
2671 3158 8.317891 TCGATGTGTTGTTTATTGATGTAACT 57.682 30.769 0.00 0.00 0.00 2.24
2672 3159 9.210426 GATCGATGTGTTGTTTATTGATGTAAC 57.790 33.333 0.54 0.00 0.00 2.50
2673 3160 8.113675 CGATCGATGTGTTGTTTATTGATGTAA 58.886 33.333 10.26 0.00 0.00 2.41
2674 3161 7.489757 TCGATCGATGTGTTGTTTATTGATGTA 59.510 33.333 15.15 0.00 0.00 2.29
2675 3162 6.312672 TCGATCGATGTGTTGTTTATTGATGT 59.687 34.615 15.15 0.00 0.00 3.06
2676 3163 6.704819 TCGATCGATGTGTTGTTTATTGATG 58.295 36.000 15.15 0.00 0.00 3.07
2677 3164 6.902224 TCGATCGATGTGTTGTTTATTGAT 57.098 33.333 15.15 0.00 0.00 2.57
2678 3165 6.756542 AGATCGATCGATGTGTTGTTTATTGA 59.243 34.615 33.86 0.00 34.60 2.57
2679 3166 6.937457 AGATCGATCGATGTGTTGTTTATTG 58.063 36.000 33.86 0.00 34.60 1.90
2680 3167 6.756542 TGAGATCGATCGATGTGTTGTTTATT 59.243 34.615 33.86 7.05 34.60 1.40
2681 3168 6.199154 GTGAGATCGATCGATGTGTTGTTTAT 59.801 38.462 33.86 7.27 34.60 1.40
2682 3169 5.515270 GTGAGATCGATCGATGTGTTGTTTA 59.485 40.000 33.86 7.90 34.60 2.01
2683 3170 4.327357 GTGAGATCGATCGATGTGTTGTTT 59.673 41.667 33.86 8.66 34.60 2.83
2684 3171 3.859961 GTGAGATCGATCGATGTGTTGTT 59.140 43.478 33.86 9.47 34.60 2.83
2685 3172 3.129462 AGTGAGATCGATCGATGTGTTGT 59.871 43.478 33.86 10.30 34.60 3.32
2686 3173 3.700154 AGTGAGATCGATCGATGTGTTG 58.300 45.455 33.86 0.00 34.60 3.33
2687 3174 5.500645 TTAGTGAGATCGATCGATGTGTT 57.499 39.130 33.86 18.60 34.60 3.32
2688 3175 5.697473 ATTAGTGAGATCGATCGATGTGT 57.303 39.130 33.86 18.24 34.60 3.72
2689 3176 6.638468 TGAAATTAGTGAGATCGATCGATGTG 59.362 38.462 33.86 0.00 34.60 3.21
2690 3177 6.739112 TGAAATTAGTGAGATCGATCGATGT 58.261 36.000 33.86 29.85 34.60 3.06
2691 3178 7.060518 GTCTGAAATTAGTGAGATCGATCGATG 59.939 40.741 33.86 14.51 34.60 3.84
2692 3179 7.081349 GTCTGAAATTAGTGAGATCGATCGAT 58.919 38.462 29.76 29.76 37.59 3.59
2693 3180 6.431278 GTCTGAAATTAGTGAGATCGATCGA 58.569 40.000 21.86 21.86 0.00 3.59
2694 3181 5.627367 GGTCTGAAATTAGTGAGATCGATCG 59.373 44.000 19.33 9.36 0.00 3.69
2695 3182 6.507900 TGGTCTGAAATTAGTGAGATCGATC 58.492 40.000 17.91 17.91 0.00 3.69
2696 3183 6.471233 TGGTCTGAAATTAGTGAGATCGAT 57.529 37.500 0.00 0.00 0.00 3.59
2697 3184 5.914898 TGGTCTGAAATTAGTGAGATCGA 57.085 39.130 0.00 0.00 0.00 3.59
2698 3185 7.429633 ACTATGGTCTGAAATTAGTGAGATCG 58.570 38.462 0.00 0.00 0.00 3.69
2699 3186 7.870445 GGACTATGGTCTGAAATTAGTGAGATC 59.130 40.741 9.27 0.00 41.82 2.75
2700 3187 7.345653 TGGACTATGGTCTGAAATTAGTGAGAT 59.654 37.037 9.27 0.00 41.82 2.75
2701 3188 6.667848 TGGACTATGGTCTGAAATTAGTGAGA 59.332 38.462 9.27 0.00 41.82 3.27
2702 3189 6.878317 TGGACTATGGTCTGAAATTAGTGAG 58.122 40.000 9.27 0.00 41.82 3.51
2703 3190 6.867519 TGGACTATGGTCTGAAATTAGTGA 57.132 37.500 9.27 0.00 41.82 3.41
2704 3191 6.017605 GCATGGACTATGGTCTGAAATTAGTG 60.018 42.308 9.27 0.00 41.82 2.74
2705 3192 6.058183 GCATGGACTATGGTCTGAAATTAGT 58.942 40.000 9.27 0.00 41.82 2.24
2706 3193 6.057533 TGCATGGACTATGGTCTGAAATTAG 58.942 40.000 9.27 0.00 41.82 1.73
2707 3194 6.000246 TGCATGGACTATGGTCTGAAATTA 58.000 37.500 9.27 0.00 41.82 1.40
2708 3195 4.858850 TGCATGGACTATGGTCTGAAATT 58.141 39.130 9.27 0.00 41.82 1.82
2709 3196 4.508551 TGCATGGACTATGGTCTGAAAT 57.491 40.909 9.27 0.00 41.82 2.17
2710 3197 3.998913 TGCATGGACTATGGTCTGAAA 57.001 42.857 9.27 0.00 41.82 2.69
2711 3198 4.508551 AATGCATGGACTATGGTCTGAA 57.491 40.909 9.27 0.00 41.82 3.02
2712 3199 4.080413 TGAAATGCATGGACTATGGTCTGA 60.080 41.667 9.27 0.00 41.82 3.27
2713 3200 4.201657 TGAAATGCATGGACTATGGTCTG 58.798 43.478 9.27 1.75 41.82 3.51
2714 3201 4.508551 TGAAATGCATGGACTATGGTCT 57.491 40.909 9.27 0.00 41.82 3.85
2715 3202 4.398988 TGTTGAAATGCATGGACTATGGTC 59.601 41.667 0.00 0.00 41.43 4.02
2716 3203 4.343231 TGTTGAAATGCATGGACTATGGT 58.657 39.130 0.00 0.00 37.26 3.55
2717 3204 4.202080 CCTGTTGAAATGCATGGACTATGG 60.202 45.833 0.00 0.00 37.26 2.74
2718 3205 4.400251 ACCTGTTGAAATGCATGGACTATG 59.600 41.667 0.00 0.00 39.88 2.23
2719 3206 4.603131 ACCTGTTGAAATGCATGGACTAT 58.397 39.130 0.00 0.00 0.00 2.12
2720 3207 4.009675 GACCTGTTGAAATGCATGGACTA 58.990 43.478 0.00 0.00 0.00 2.59
2721 3208 2.821969 GACCTGTTGAAATGCATGGACT 59.178 45.455 0.00 0.00 0.00 3.85
2722 3209 2.094545 GGACCTGTTGAAATGCATGGAC 60.095 50.000 0.00 0.00 0.00 4.02
2723 3210 2.170166 GGACCTGTTGAAATGCATGGA 58.830 47.619 0.00 0.00 0.00 3.41
2724 3211 1.894466 TGGACCTGTTGAAATGCATGG 59.106 47.619 0.00 0.00 0.00 3.66
2725 3212 3.880047 ATGGACCTGTTGAAATGCATG 57.120 42.857 0.00 0.00 0.00 4.06
2726 3213 4.895668 AAATGGACCTGTTGAAATGCAT 57.104 36.364 0.00 0.00 0.00 3.96
2727 3214 4.100653 TGAAAATGGACCTGTTGAAATGCA 59.899 37.500 0.00 0.00 0.00 3.96
2728 3215 4.448732 GTGAAAATGGACCTGTTGAAATGC 59.551 41.667 0.00 0.00 0.00 3.56
2729 3216 5.463061 GTGTGAAAATGGACCTGTTGAAATG 59.537 40.000 0.00 0.00 0.00 2.32
2730 3217 5.128499 TGTGTGAAAATGGACCTGTTGAAAT 59.872 36.000 0.00 0.00 0.00 2.17
2731 3218 4.464244 TGTGTGAAAATGGACCTGTTGAAA 59.536 37.500 0.00 0.00 0.00 2.69
2732 3219 4.019858 TGTGTGAAAATGGACCTGTTGAA 58.980 39.130 0.00 0.00 0.00 2.69
2733 3220 3.625853 TGTGTGAAAATGGACCTGTTGA 58.374 40.909 0.00 0.00 0.00 3.18
2734 3221 4.362279 CTTGTGTGAAAATGGACCTGTTG 58.638 43.478 0.00 0.00 0.00 3.33
2735 3222 3.181476 GCTTGTGTGAAAATGGACCTGTT 60.181 43.478 0.00 0.00 0.00 3.16
2736 3223 2.362077 GCTTGTGTGAAAATGGACCTGT 59.638 45.455 0.00 0.00 0.00 4.00
2737 3224 2.361757 TGCTTGTGTGAAAATGGACCTG 59.638 45.455 0.00 0.00 0.00 4.00
2738 3225 2.665165 TGCTTGTGTGAAAATGGACCT 58.335 42.857 0.00 0.00 0.00 3.85
2739 3226 3.451141 TTGCTTGTGTGAAAATGGACC 57.549 42.857 0.00 0.00 0.00 4.46
2740 3227 5.793026 TTTTTGCTTGTGTGAAAATGGAC 57.207 34.783 0.00 0.00 0.00 4.02
2775 3262 3.902881 TGTTGGAGCCACATTGTTTTT 57.097 38.095 0.00 0.00 0.00 1.94
2776 3263 3.902881 TTGTTGGAGCCACATTGTTTT 57.097 38.095 0.00 0.00 0.00 2.43
2777 3264 3.902881 TTTGTTGGAGCCACATTGTTT 57.097 38.095 0.00 0.00 0.00 2.83
2778 3265 3.902881 TTTTGTTGGAGCCACATTGTT 57.097 38.095 0.00 0.00 0.00 2.83
2779 3266 3.902881 TTTTTGTTGGAGCCACATTGT 57.097 38.095 0.00 0.00 0.00 2.71
2796 3283 9.715121 AGCTCAAATCATGAATTATGTGTTTTT 57.285 25.926 0.00 0.00 37.67 1.94
2797 3284 9.715121 AAGCTCAAATCATGAATTATGTGTTTT 57.285 25.926 0.00 0.00 37.67 2.43
2798 3285 9.146984 CAAGCTCAAATCATGAATTATGTGTTT 57.853 29.630 0.00 0.00 37.67 2.83
2799 3286 7.762615 CCAAGCTCAAATCATGAATTATGTGTT 59.237 33.333 0.00 0.00 37.67 3.32
2800 3287 7.262772 CCAAGCTCAAATCATGAATTATGTGT 58.737 34.615 0.00 0.00 37.67 3.72
2801 3288 6.700081 CCCAAGCTCAAATCATGAATTATGTG 59.300 38.462 0.00 0.00 37.67 3.21
2802 3289 6.381994 ACCCAAGCTCAAATCATGAATTATGT 59.618 34.615 0.00 0.00 37.67 2.29
2803 3290 6.700081 CACCCAAGCTCAAATCATGAATTATG 59.300 38.462 0.00 0.00 37.67 1.90
2804 3291 6.381994 ACACCCAAGCTCAAATCATGAATTAT 59.618 34.615 0.00 0.00 37.67 1.28
2805 3292 5.716228 ACACCCAAGCTCAAATCATGAATTA 59.284 36.000 0.00 0.00 37.67 1.40
2806 3293 4.529377 ACACCCAAGCTCAAATCATGAATT 59.471 37.500 0.00 0.00 37.67 2.17
2807 3294 4.091549 ACACCCAAGCTCAAATCATGAAT 58.908 39.130 0.00 0.00 37.67 2.57
2808 3295 3.499338 ACACCCAAGCTCAAATCATGAA 58.501 40.909 0.00 0.00 37.67 2.57
2809 3296 3.159213 ACACCCAAGCTCAAATCATGA 57.841 42.857 0.00 0.00 36.38 3.07
2810 3297 4.218200 TGTTACACCCAAGCTCAAATCATG 59.782 41.667 0.00 0.00 0.00 3.07
2811 3298 4.406456 TGTTACACCCAAGCTCAAATCAT 58.594 39.130 0.00 0.00 0.00 2.45
2812 3299 3.826524 TGTTACACCCAAGCTCAAATCA 58.173 40.909 0.00 0.00 0.00 2.57
2813 3300 4.846779 TTGTTACACCCAAGCTCAAATC 57.153 40.909 0.00 0.00 0.00 2.17
2814 3301 5.606348 TTTTGTTACACCCAAGCTCAAAT 57.394 34.783 0.00 0.00 0.00 2.32
2815 3302 5.172205 GTTTTTGTTACACCCAAGCTCAAA 58.828 37.500 0.00 0.00 0.00 2.69
2816 3303 4.382147 GGTTTTTGTTACACCCAAGCTCAA 60.382 41.667 0.00 0.00 0.00 3.02
2817 3304 3.131400 GGTTTTTGTTACACCCAAGCTCA 59.869 43.478 0.00 0.00 0.00 4.26
2818 3305 3.131400 TGGTTTTTGTTACACCCAAGCTC 59.869 43.478 0.00 0.00 0.00 4.09
2819 3306 3.100671 TGGTTTTTGTTACACCCAAGCT 58.899 40.909 0.00 0.00 0.00 3.74
2820 3307 3.191669 GTGGTTTTTGTTACACCCAAGC 58.808 45.455 0.00 0.00 0.00 4.01
2821 3308 4.177783 GTGTGGTTTTTGTTACACCCAAG 58.822 43.478 0.00 0.00 37.92 3.61
2822 3309 3.576982 TGTGTGGTTTTTGTTACACCCAA 59.423 39.130 0.00 0.00 41.94 4.12
2823 3310 3.162666 TGTGTGGTTTTTGTTACACCCA 58.837 40.909 0.00 0.00 41.94 4.51
2824 3311 3.870633 TGTGTGGTTTTTGTTACACCC 57.129 42.857 0.00 0.00 41.94 4.61
2825 3312 4.801516 GTCATGTGTGGTTTTTGTTACACC 59.198 41.667 0.00 0.00 41.94 4.16
2826 3313 4.801516 GGTCATGTGTGGTTTTTGTTACAC 59.198 41.667 0.00 0.00 42.70 2.90
2827 3314 4.707448 AGGTCATGTGTGGTTTTTGTTACA 59.293 37.500 0.00 0.00 0.00 2.41
2828 3315 5.257082 AGGTCATGTGTGGTTTTTGTTAC 57.743 39.130 0.00 0.00 0.00 2.50
2829 3316 5.886474 TGTAGGTCATGTGTGGTTTTTGTTA 59.114 36.000 0.00 0.00 0.00 2.41
2830 3317 4.707448 TGTAGGTCATGTGTGGTTTTTGTT 59.293 37.500 0.00 0.00 0.00 2.83
2831 3318 4.274147 TGTAGGTCATGTGTGGTTTTTGT 58.726 39.130 0.00 0.00 0.00 2.83
2832 3319 4.909696 TGTAGGTCATGTGTGGTTTTTG 57.090 40.909 0.00 0.00 0.00 2.44
2833 3320 4.953579 ACTTGTAGGTCATGTGTGGTTTTT 59.046 37.500 0.00 0.00 33.98 1.94
2834 3321 4.532834 ACTTGTAGGTCATGTGTGGTTTT 58.467 39.130 0.00 0.00 33.98 2.43
2835 3322 4.134563 GACTTGTAGGTCATGTGTGGTTT 58.865 43.478 0.00 0.00 35.12 3.27
2836 3323 3.740115 GACTTGTAGGTCATGTGTGGTT 58.260 45.455 0.00 0.00 35.12 3.67
2837 3324 2.288825 CGACTTGTAGGTCATGTGTGGT 60.289 50.000 0.00 0.00 35.12 4.16
2838 3325 2.288825 ACGACTTGTAGGTCATGTGTGG 60.289 50.000 0.00 0.00 35.12 4.17
2839 3326 3.026630 ACGACTTGTAGGTCATGTGTG 57.973 47.619 0.00 0.00 35.12 3.82
2840 3327 3.650139 GAACGACTTGTAGGTCATGTGT 58.350 45.455 0.00 0.00 35.12 3.72
2841 3328 2.661675 CGAACGACTTGTAGGTCATGTG 59.338 50.000 0.00 0.00 35.12 3.21
2842 3329 2.555325 TCGAACGACTTGTAGGTCATGT 59.445 45.455 0.00 0.00 37.18 3.21
2843 3330 3.211803 TCGAACGACTTGTAGGTCATG 57.788 47.619 0.00 0.00 36.12 3.07
2844 3331 3.928727 TTCGAACGACTTGTAGGTCAT 57.071 42.857 0.00 0.00 36.12 3.06
2845 3332 3.928727 ATTCGAACGACTTGTAGGTCA 57.071 42.857 0.00 0.00 36.12 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.