Multiple sequence alignment - TraesCS1A01G326200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G326200 chr1A 100.000 5762 0 0 1 5762 516622344 516628105 0.000000e+00 10641.0
1 TraesCS1A01G326200 chr1A 88.394 629 48 13 4265 4887 516714364 516714973 0.000000e+00 734.0
2 TraesCS1A01G326200 chr1A 92.675 314 19 3 2236 2547 516712745 516713056 3.170000e-122 449.0
3 TraesCS1A01G326200 chr1A 86.610 351 28 9 980 1321 516698267 516698607 2.540000e-98 370.0
4 TraesCS1A01G326200 chr1A 87.413 286 28 3 2765 3050 516714026 516714303 7.200000e-84 322.0
5 TraesCS1A01G326200 chr1A 81.272 283 46 6 1434 1712 516701851 516702130 7.510000e-54 222.0
6 TraesCS1A01G326200 chr1A 79.461 297 30 18 2255 2541 517891843 517892118 1.280000e-41 182.0
7 TraesCS1A01G326200 chr1A 95.833 72 3 0 5559 5630 518861587 518861516 3.650000e-22 117.0
8 TraesCS1A01G326200 chr1A 92.500 80 6 0 5553 5632 518668068 518667989 1.310000e-21 115.0
9 TraesCS1A01G326200 chr1A 86.735 98 10 3 3595 3691 516625873 516625968 7.900000e-19 106.0
10 TraesCS1A01G326200 chr1A 86.735 98 10 3 3530 3625 516625938 516626034 7.900000e-19 106.0
11 TraesCS1A01G326200 chr1A 94.286 70 3 1 3051 3119 587934200 587934269 7.900000e-19 106.0
12 TraesCS1A01G326200 chr1A 90.123 81 7 1 3051 3130 577503136 577503056 2.840000e-18 104.0
13 TraesCS1A01G326200 chr1A 96.610 59 1 1 3953 4011 445657503 445657446 4.750000e-16 97.1
14 TraesCS1A01G326200 chr1A 84.000 75 10 2 4962 5036 518953931 518953859 2.880000e-08 71.3
15 TraesCS1A01G326200 chr1B 91.472 985 60 9 2079 3054 567114402 567115371 0.000000e+00 1332.0
16 TraesCS1A01G326200 chr1B 87.962 1055 64 24 861 1885 567113354 567114375 0.000000e+00 1186.0
17 TraesCS1A01G326200 chr1B 93.353 677 38 4 4007 4678 567115359 567116033 0.000000e+00 994.0
18 TraesCS1A01G326200 chr1B 91.939 459 28 6 4561 5014 567116031 567116485 8.150000e-178 634.0
19 TraesCS1A01G326200 chr1B 91.087 460 21 5 861 1318 567854771 567855212 6.390000e-169 604.0
20 TraesCS1A01G326200 chr1B 86.703 549 56 7 4286 4828 567212668 567213205 1.380000e-165 593.0
21 TraesCS1A01G326200 chr1B 88.613 483 38 14 2071 2547 567856069 567856540 6.480000e-159 571.0
22 TraesCS1A01G326200 chr1B 89.135 451 32 12 5192 5632 567119722 567120165 3.930000e-151 545.0
23 TraesCS1A01G326200 chr1B 92.623 366 25 2 1 366 567110740 567111103 5.110000e-145 525.0
24 TraesCS1A01G326200 chr1B 85.425 494 56 9 366 857 567853884 567854363 3.100000e-137 499.0
25 TraesCS1A01G326200 chr1B 88.804 393 43 1 366 757 567111143 567111535 1.120000e-131 481.0
26 TraesCS1A01G326200 chr1B 88.189 381 32 7 4801 5180 567119276 567119644 5.300000e-120 442.0
27 TraesCS1A01G326200 chr1B 84.106 453 57 9 4472 4910 567964531 567964982 1.920000e-114 424.0
28 TraesCS1A01G326200 chr1B 91.554 296 21 3 2254 2547 567211832 567212125 6.950000e-109 405.0
29 TraesCS1A01G326200 chr1B 92.473 279 14 1 88 366 567786564 567786835 5.410000e-105 392.0
30 TraesCS1A01G326200 chr1B 85.286 367 44 5 2684 3050 567212263 567212619 2.540000e-98 370.0
31 TraesCS1A01G326200 chr1B 86.875 320 28 8 5192 5506 567116668 567116978 4.270000e-91 346.0
32 TraesCS1A01G326200 chr1B 87.500 272 17 8 1041 1312 567211525 567211779 1.210000e-76 298.0
33 TraesCS1A01G326200 chr1B 78.033 478 59 27 3172 3626 681051735 681052189 5.730000e-65 259.0
34 TraesCS1A01G326200 chr1B 94.118 170 8 2 1162 1331 567210795 567210962 2.060000e-64 257.0
35 TraesCS1A01G326200 chr1B 80.597 268 26 10 3596 3837 681052092 681052359 3.550000e-42 183.0
36 TraesCS1A01G326200 chr1B 83.251 203 25 8 5546 5741 567117095 567117295 1.650000e-40 178.0
37 TraesCS1A01G326200 chr1B 84.615 156 18 3 2680 2835 567856761 567856910 3.600000e-32 150.0
38 TraesCS1A01G326200 chr1B 96.053 76 3 0 5553 5628 571497267 571497192 2.180000e-24 124.0
39 TraesCS1A01G326200 chr1B 95.946 74 2 1 5555 5628 571695412 571695340 1.010000e-22 119.0
40 TraesCS1A01G326200 chr1B 78.218 202 22 12 2170 2351 570704521 570704720 6.100000e-20 110.0
41 TraesCS1A01G326200 chr1B 98.361 61 1 0 5630 5690 567120210 567120270 2.200000e-19 108.0
42 TraesCS1A01G326200 chr1B 96.667 60 2 0 2 61 567786506 567786565 3.670000e-17 100.0
43 TraesCS1A01G326200 chr1B 85.000 80 10 2 4957 5036 572288445 572288368 4.790000e-11 80.5
44 TraesCS1A01G326200 chr1B 90.741 54 4 1 3129 3182 473823940 473823888 2.880000e-08 71.3
45 TraesCS1A01G326200 chr1B 88.525 61 3 4 861 919 570703054 570703112 2.880000e-08 71.3
46 TraesCS1A01G326200 chr1D 90.928 948 45 12 1638 2547 420076104 420077048 0.000000e+00 1236.0
47 TraesCS1A01G326200 chr1D 90.821 719 44 7 934 1643 420075279 420075984 0.000000e+00 942.0
48 TraesCS1A01G326200 chr1D 89.410 661 53 9 4522 5180 420077884 420078529 0.000000e+00 817.0
49 TraesCS1A01G326200 chr1D 88.391 491 43 10 2064 2547 420204350 420204833 3.870000e-161 579.0
50 TraesCS1A01G326200 chr1D 88.511 470 48 6 366 831 420074673 420075140 1.080000e-156 564.0
51 TraesCS1A01G326200 chr1D 90.330 424 25 11 5192 5610 420078608 420079020 5.080000e-150 542.0
52 TraesCS1A01G326200 chr1D 86.929 482 52 2 4291 4771 420205450 420205921 1.100000e-146 531.0
53 TraesCS1A01G326200 chr1D 91.468 293 25 0 2758 3050 420077331 420077623 2.500000e-108 403.0
54 TraesCS1A01G326200 chr1D 88.650 326 31 6 4590 4910 420080144 420080468 5.410000e-105 392.0
55 TraesCS1A01G326200 chr1D 87.009 331 37 5 3621 3949 201469825 201470151 9.120000e-98 368.0
56 TraesCS1A01G326200 chr1D 86.834 319 32 4 2684 3002 420205048 420205356 1.190000e-91 348.0
57 TraesCS1A01G326200 chr1D 84.273 337 35 12 983 1317 420203545 420203865 4.330000e-81 313.0
58 TraesCS1A01G326200 chr1D 87.149 249 22 6 2285 2531 420077646 420077886 2.050000e-69 274.0
59 TraesCS1A01G326200 chr1D 93.805 113 6 1 5630 5741 420079080 420079192 9.930000e-38 169.0
60 TraesCS1A01G326200 chr1D 85.135 148 13 7 4754 4895 420205938 420206082 6.020000e-30 143.0
61 TraesCS1A01G326200 chr1D 88.136 118 5 1 249 366 420074526 420074634 1.300000e-26 132.0
62 TraesCS1A01G326200 chr1D 85.366 123 17 1 731 852 432218207 432218085 6.060000e-25 126.0
63 TraesCS1A01G326200 chr1D 97.297 74 1 1 5553 5626 423030992 423030920 2.180000e-24 124.0
64 TraesCS1A01G326200 chr1D 92.500 80 6 0 5553 5632 422837416 422837337 1.310000e-21 115.0
65 TraesCS1A01G326200 chr1D 94.595 74 2 1 5559 5632 422838992 422838921 4.720000e-21 113.0
66 TraesCS1A01G326200 chr1D 88.889 81 8 1 3051 3130 377798775 377798695 1.320000e-16 99.0
67 TraesCS1A01G326200 chr1D 92.424 66 4 1 3947 4011 80006369 80006304 6.150000e-15 93.5
68 TraesCS1A01G326200 chr1D 86.250 80 9 2 4957 5036 423035644 423035567 1.030000e-12 86.1
69 TraesCS1A01G326200 chr1D 88.333 60 4 3 3129 3187 494465750 494465807 1.040000e-07 69.4
70 TraesCS1A01G326200 chr2D 89.252 856 46 18 3172 4014 499231222 499230400 0.000000e+00 1029.0
71 TraesCS1A01G326200 chr2D 90.968 465 31 9 3172 3625 620787351 620786887 2.950000e-172 616.0
72 TraesCS1A01G326200 chr2D 90.838 382 24 5 3595 3973 620786984 620786611 8.620000e-138 501.0
73 TraesCS1A01G326200 chr2D 82.326 215 34 4 622 835 637975020 637974809 3.550000e-42 183.0
74 TraesCS1A01G326200 chr2D 81.043 211 35 5 626 835 622490761 622490967 4.620000e-36 163.0
75 TraesCS1A01G326200 chr2D 92.500 80 5 1 3530 3609 499230813 499230735 4.720000e-21 113.0
76 TraesCS1A01G326200 chr5B 88.221 849 58 23 3172 4007 441810033 441809214 0.000000e+00 976.0
77 TraesCS1A01G326200 chr5B 82.723 191 33 0 636 826 345470825 345471015 2.760000e-38 171.0
78 TraesCS1A01G326200 chr5B 89.796 98 7 2 3530 3625 441809618 441809522 7.840000e-24 122.0
79 TraesCS1A01G326200 chr5B 85.714 98 11 3 3595 3691 441809683 441809588 3.670000e-17 100.0
80 TraesCS1A01G326200 chr5B 87.654 81 8 2 3052 3130 432991987 432991907 6.150000e-15 93.5
81 TraesCS1A01G326200 chr7D 88.291 632 56 8 4286 4910 386513683 386513063 0.000000e+00 741.0
82 TraesCS1A01G326200 chr7D 89.002 491 42 9 2064 2547 386514790 386514305 1.070000e-166 597.0
83 TraesCS1A01G326200 chr7D 87.842 329 30 6 3623 3949 37578202 37578522 1.520000e-100 377.0
84 TraesCS1A01G326200 chr7D 85.757 337 33 7 2687 3020 386514080 386513756 5.530000e-90 342.0
85 TraesCS1A01G326200 chr7D 80.119 337 48 13 1387 1713 386515164 386514837 3.470000e-57 233.0
86 TraesCS1A01G326200 chr7D 90.909 55 4 1 3128 3182 414289311 414289258 8.010000e-09 73.1
87 TraesCS1A01G326200 chr3D 90.168 417 26 10 3595 4007 561175922 561175517 3.950000e-146 529.0
88 TraesCS1A01G326200 chr3D 86.301 438 31 13 3207 3625 561176249 561175822 3.170000e-122 449.0
89 TraesCS1A01G326200 chr3D 80.930 215 38 3 623 835 539556967 539557180 3.570000e-37 167.0
90 TraesCS1A01G326200 chr3D 79.375 160 21 8 3337 3488 615100862 615100707 1.020000e-17 102.0
91 TraesCS1A01G326200 chr3B 93.567 342 16 3 3667 4008 396624503 396624838 6.660000e-139 505.0
92 TraesCS1A01G326200 chr3B 89.174 351 24 4 3229 3573 396624160 396624502 5.340000e-115 425.0
93 TraesCS1A01G326200 chr3B 84.496 129 20 0 632 760 104721111 104720983 1.690000e-25 128.0
94 TraesCS1A01G326200 chr3B 96.154 78 2 1 3052 3128 396624079 396624156 6.060000e-25 126.0
95 TraesCS1A01G326200 chr3A 83.333 546 41 19 3320 3859 723650208 723649707 5.260000e-125 459.0
96 TraesCS1A01G326200 chr3A 91.566 83 5 2 3050 3130 637457079 637457161 4.720000e-21 113.0
97 TraesCS1A01G326200 chr3A 77.914 163 28 7 693 852 524755973 524756130 1.710000e-15 95.3
98 TraesCS1A01G326200 chr5D 89.058 329 31 4 3623 3949 107623440 107623115 2.500000e-108 403.0
99 TraesCS1A01G326200 chr2A 87.195 328 33 7 3623 3949 644086449 644086130 1.180000e-96 364.0
100 TraesCS1A01G326200 chr2A 87.209 86 10 1 3345 3430 681462808 681462724 4.750000e-16 97.1
101 TraesCS1A01G326200 chr2A 75.000 220 42 11 4957 5168 780743445 780743231 7.950000e-14 89.8
102 TraesCS1A01G326200 chr2A 82.979 94 15 1 3337 3430 767628876 767628968 3.700000e-12 84.2
103 TraesCS1A01G326200 chr2A 97.778 45 1 0 3125 3169 120719745 120719789 1.720000e-10 78.7
104 TraesCS1A01G326200 chr2A 95.745 47 2 0 3123 3169 507071275 507071229 6.190000e-10 76.8
105 TraesCS1A01G326200 chr6B 81.857 237 41 2 632 867 585331163 585330928 1.270000e-46 198.0
106 TraesCS1A01G326200 chr6B 86.310 168 20 2 3290 3455 670013526 670013360 4.590000e-41 180.0
107 TraesCS1A01G326200 chr4D 86.131 137 18 1 622 757 503614681 503614817 4.650000e-31 147.0
108 TraesCS1A01G326200 chr4D 97.778 45 1 0 3125 3169 415293004 415293048 1.720000e-10 78.7
109 TraesCS1A01G326200 chr7A 89.412 85 7 2 3048 3130 11662462 11662378 7.900000e-19 106.0
110 TraesCS1A01G326200 chr7A 88.889 81 8 1 3051 3130 491200655 491200575 1.320000e-16 99.0
111 TraesCS1A01G326200 chr7A 96.610 59 1 1 3953 4010 554398861 554398803 4.750000e-16 97.1
112 TraesCS1A01G326200 chr7A 100.000 43 0 0 3127 3169 125498203 125498161 4.790000e-11 80.5
113 TraesCS1A01G326200 chr4A 96.721 61 2 0 3947 4007 616975780 616975840 1.020000e-17 102.0
114 TraesCS1A01G326200 chr7B 81.203 133 18 7 699 828 706247092 706247220 3.670000e-17 100.0
115 TraesCS1A01G326200 chr6D 98.182 55 1 0 3953 4007 454962892 454962838 4.750000e-16 97.1
116 TraesCS1A01G326200 chr6A 98.182 55 1 0 3954 4008 567160139 567160193 4.750000e-16 97.1
117 TraesCS1A01G326200 chr2B 89.333 75 7 1 3058 3131 768092954 768092880 6.150000e-15 93.5
118 TraesCS1A01G326200 chr5A 95.918 49 1 1 3121 3169 363850785 363850832 1.720000e-10 78.7
119 TraesCS1A01G326200 chr4B 97.778 45 1 0 3125 3169 54037928 54037972 1.720000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G326200 chr1A 516622344 516628105 5761 False 3617.666667 10641 91.156667 1 5762 3 chr1A.!!$F3 5761
1 TraesCS1A01G326200 chr1A 516712745 516714973 2228 False 501.666667 734 89.494000 2236 4887 3 chr1A.!!$F5 2651
2 TraesCS1A01G326200 chr1A 516698267 516702130 3863 False 296.000000 370 83.941000 980 1712 2 chr1A.!!$F4 732
3 TraesCS1A01G326200 chr1B 567110740 567120270 9530 False 615.545455 1332 90.178545 1 5741 11 chr1B.!!$F2 5740
4 TraesCS1A01G326200 chr1B 567853884 567856910 3026 False 456.000000 604 87.435000 366 2835 4 chr1B.!!$F5 2469
5 TraesCS1A01G326200 chr1B 567210795 567213205 2410 False 384.600000 593 89.032200 1041 4828 5 chr1B.!!$F3 3787
6 TraesCS1A01G326200 chr1B 681051735 681052359 624 False 221.000000 259 79.315000 3172 3837 2 chr1B.!!$F7 665
7 TraesCS1A01G326200 chr1D 420074526 420080468 5942 False 547.100000 1236 89.920800 249 5741 10 chr1D.!!$F3 5492
8 TraesCS1A01G326200 chr1D 420203545 420206082 2537 False 382.800000 579 86.312400 983 4895 5 chr1D.!!$F4 3912
9 TraesCS1A01G326200 chr2D 499230400 499231222 822 True 571.000000 1029 90.876000 3172 4014 2 chr2D.!!$R2 842
10 TraesCS1A01G326200 chr2D 620786611 620787351 740 True 558.500000 616 90.903000 3172 3973 2 chr2D.!!$R3 801
11 TraesCS1A01G326200 chr5B 441809214 441810033 819 True 399.333333 976 87.910333 3172 4007 3 chr5B.!!$R2 835
12 TraesCS1A01G326200 chr7D 386513063 386515164 2101 True 478.250000 741 85.792250 1387 4910 4 chr7D.!!$R2 3523
13 TraesCS1A01G326200 chr3D 561175517 561176249 732 True 489.000000 529 88.234500 3207 4007 2 chr3D.!!$R2 800
14 TraesCS1A01G326200 chr3B 396624079 396624838 759 False 352.000000 505 92.965000 3052 4008 3 chr3B.!!$F1 956
15 TraesCS1A01G326200 chr3A 723649707 723650208 501 True 459.000000 459 83.333000 3320 3859 1 chr3A.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 536 0.037160 TCGCCCCCTTGTTTAGAACC 59.963 55.0 0.0 0.0 0.0 3.62 F
2002 7964 0.104304 GATAGCACACCCCGTCGATT 59.896 55.0 0.0 0.0 0.0 3.34 F
2861 9645 0.325860 TAGTGGGGGAATAGGTGCGT 60.326 55.0 0.0 0.0 0.0 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 8005 0.165944 CAAACCGAACGCTAGCTTGG 59.834 55.0 13.93 10.81 0.0 3.61 R
2958 9742 0.310854 GTGCCGAACAAAGTCAAGGG 59.689 55.0 0.00 0.00 0.0 3.95 R
4769 11919 0.109342 ACTTGTGGAGCTTCAGTGGG 59.891 55.0 0.00 0.00 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.754406 TGTGCAGAAATCATTGGTTTTTGAG 59.246 36.000 15.09 0.19 0.00 3.02
48 49 2.956132 TCATTGGTTTTTGAGGGCTCA 58.044 42.857 0.00 0.00 37.91 4.26
92 93 7.017645 GTGAGCCTATAATGCAAACATAATCG 58.982 38.462 0.00 0.00 34.62 3.34
105 106 7.697710 TGCAAACATAATCGAAATGAAGATCAC 59.302 33.333 15.72 0.00 0.00 3.06
117 118 4.790765 TGAAGATCACTGTACAGGTCAG 57.209 45.455 26.12 13.05 38.68 3.51
162 163 0.404040 TTGGAACTTGGGCCCTACTG 59.596 55.000 25.70 12.60 0.00 2.74
166 167 1.427072 AACTTGGGCCCTACTGCAGT 61.427 55.000 25.12 25.12 0.00 4.40
188 189 7.658525 AGTCATACTGAGACAATCTTCATCT 57.341 36.000 0.00 0.00 38.46 2.90
193 194 9.761504 CATACTGAGACAATCTTCATCTATGTT 57.238 33.333 0.00 0.00 0.00 2.71
200 201 9.491675 AGACAATCTTCATCTATGTTCATGATC 57.508 33.333 0.00 0.00 0.00 2.92
208 209 7.567458 TCATCTATGTTCATGATCCTCAAACA 58.433 34.615 0.00 0.00 33.33 2.83
218 219 4.984295 TGATCCTCAAACAAACATCCAGA 58.016 39.130 0.00 0.00 0.00 3.86
226 227 4.460948 AACAAACATCCAGATTCATGCC 57.539 40.909 0.00 0.00 0.00 4.40
227 228 2.424601 ACAAACATCCAGATTCATGCCG 59.575 45.455 0.00 0.00 0.00 5.69
303 304 2.840651 CCCTTCAACCATAGTGGAGACT 59.159 50.000 2.45 0.00 40.96 3.24
324 325 3.851976 AGGTGTCTACTTCACATCGAC 57.148 47.619 0.00 0.00 37.52 4.20
341 342 1.504359 GACCAAATGTGTCGGTCGAA 58.496 50.000 0.00 0.00 39.86 3.71
412 491 3.330267 AGCACAGGAAGATTTCGAAGTC 58.670 45.455 12.38 12.38 0.00 3.01
433 512 0.615331 ACATCATCAACTCCCGCACT 59.385 50.000 0.00 0.00 0.00 4.40
457 536 0.037160 TCGCCCCCTTGTTTAGAACC 59.963 55.000 0.00 0.00 0.00 3.62
526 605 4.003788 CGAGGTCACCAGGCCGTT 62.004 66.667 0.00 0.00 0.00 4.44
564 644 3.227792 GATGGACGCCCCCTCGATC 62.228 68.421 0.00 0.00 0.00 3.69
605 685 1.313812 CCGTCTAGGTCTGCTCGGTT 61.314 60.000 0.00 0.00 34.38 4.44
609 689 1.303888 TAGGTCTGCTCGGTTCCGT 60.304 57.895 11.04 0.00 0.00 4.69
627 707 1.071642 TTGCCGGATCAACGACCAA 59.928 52.632 5.05 0.00 35.47 3.67
672 753 2.351276 GTCGAACATGGCCAGGGT 59.649 61.111 23.35 17.14 0.00 4.34
675 756 2.362889 GAACATGGCCAGGGTGGG 60.363 66.667 23.35 4.11 38.19 4.61
729 811 6.694447 AGCTACGTTTAGATTAGGTTTCACA 58.306 36.000 0.00 0.00 0.00 3.58
747 829 9.964303 GGTTTCACATTGCATGTAATAATATGA 57.036 29.630 8.81 7.96 42.70 2.15
845 947 4.454717 GCGGGCGTTTTAGGCGTG 62.455 66.667 0.00 0.00 37.59 5.34
852 954 1.068125 GCGTTTTAGGCGTGGGATTTT 60.068 47.619 0.00 0.00 0.00 1.82
908 3050 2.896685 CAAGTCTGAACCTGGTCTCTCT 59.103 50.000 0.00 0.00 0.00 3.10
909 3051 2.802719 AGTCTGAACCTGGTCTCTCTC 58.197 52.381 0.00 0.00 0.00 3.20
910 3052 2.378547 AGTCTGAACCTGGTCTCTCTCT 59.621 50.000 0.00 0.00 0.00 3.10
911 3053 2.752903 GTCTGAACCTGGTCTCTCTCTC 59.247 54.545 0.00 0.00 0.00 3.20
912 3054 2.647299 TCTGAACCTGGTCTCTCTCTCT 59.353 50.000 0.00 0.00 0.00 3.10
913 3055 3.075283 TCTGAACCTGGTCTCTCTCTCTT 59.925 47.826 0.00 0.00 0.00 2.85
914 3056 3.831911 CTGAACCTGGTCTCTCTCTCTTT 59.168 47.826 0.00 0.00 0.00 2.52
915 3057 4.227197 TGAACCTGGTCTCTCTCTCTTTT 58.773 43.478 0.00 0.00 0.00 2.27
916 3058 4.656112 TGAACCTGGTCTCTCTCTCTTTTT 59.344 41.667 0.00 0.00 0.00 1.94
964 3117 0.252284 ACCAATCCTCACGGTCTCCT 60.252 55.000 0.00 0.00 0.00 3.69
965 3118 0.461961 CCAATCCTCACGGTCTCCTC 59.538 60.000 0.00 0.00 0.00 3.71
966 3119 0.461961 CAATCCTCACGGTCTCCTCC 59.538 60.000 0.00 0.00 0.00 4.30
967 3120 0.336737 AATCCTCACGGTCTCCTCCT 59.663 55.000 0.00 0.00 0.00 3.69
968 3121 0.106419 ATCCTCACGGTCTCCTCCTC 60.106 60.000 0.00 0.00 0.00 3.71
969 3122 1.755008 CCTCACGGTCTCCTCCTCC 60.755 68.421 0.00 0.00 0.00 4.30
970 3123 1.304952 CTCACGGTCTCCTCCTCCT 59.695 63.158 0.00 0.00 0.00 3.69
971 3124 0.750182 CTCACGGTCTCCTCCTCCTC 60.750 65.000 0.00 0.00 0.00 3.71
972 3125 1.755008 CACGGTCTCCTCCTCCTCC 60.755 68.421 0.00 0.00 0.00 4.30
1112 3265 4.144727 ATCCCCTCCGCTCGTCCT 62.145 66.667 0.00 0.00 0.00 3.85
1245 3409 3.451894 CGGGATTGGTTGCAGGGC 61.452 66.667 0.00 0.00 0.00 5.19
1353 6561 6.346518 CGTTGCTGAAATTAAACACATTTCCC 60.347 38.462 3.55 0.00 39.12 3.97
1459 7042 3.017442 TGTGGAGGAGTATCGTTCAGAG 58.983 50.000 0.00 0.00 39.52 3.35
1517 7105 3.242543 GGAATGATACGTTTGCTCTGCTG 60.243 47.826 0.00 0.00 0.00 4.41
1542 7130 3.307108 TGTCCGATGACACCGGCA 61.307 61.111 2.28 1.95 46.40 5.69
1593 7182 0.240145 TTCCGCGATAGATAGCACCG 59.760 55.000 8.23 0.00 39.76 4.94
1676 7390 0.954452 GTTGCTGGTCTGTTTGAGGG 59.046 55.000 0.00 0.00 0.00 4.30
1759 7477 8.290325 AGACGAAAGATGAAGAAACATAAAACC 58.710 33.333 0.00 0.00 0.00 3.27
1772 7701 9.221933 AGAAACATAAAACCGTGTACATGATTA 57.778 29.630 16.87 12.13 0.00 1.75
1783 7716 8.952278 ACCGTGTACATGATTAAATATGTTGTT 58.048 29.630 16.87 0.00 38.41 2.83
1914 7853 6.350110 CCCACCACGACATTCTAATTGAAAAT 60.350 38.462 0.00 0.00 38.29 1.82
1916 7855 7.273381 CCACCACGACATTCTAATTGAAAATTC 59.727 37.037 0.00 0.00 38.29 2.17
1918 7857 6.751888 CCACGACATTCTAATTGAAAATTCCC 59.248 38.462 0.00 0.00 38.29 3.97
1919 7858 7.362920 CCACGACATTCTAATTGAAAATTCCCT 60.363 37.037 0.00 0.00 38.29 4.20
1920 7859 7.698130 CACGACATTCTAATTGAAAATTCCCTC 59.302 37.037 0.00 0.00 38.29 4.30
1974 7936 5.558818 AGAACTTGAGTCATCTCTGCAAAT 58.441 37.500 0.00 0.00 40.98 2.32
1978 7940 6.705302 ACTTGAGTCATCTCTGCAAATCTAA 58.295 36.000 0.00 0.00 40.98 2.10
1979 7941 7.337167 ACTTGAGTCATCTCTGCAAATCTAAT 58.663 34.615 0.00 0.00 40.98 1.73
1998 7960 1.521681 GCAGATAGCACACCCCGTC 60.522 63.158 0.00 0.00 44.79 4.79
2002 7964 0.104304 GATAGCACACCCCGTCGATT 59.896 55.000 0.00 0.00 0.00 3.34
2043 8005 1.907255 ACCCCAGTAAACTCTAGCCAC 59.093 52.381 0.00 0.00 0.00 5.01
2045 8007 1.906574 CCCAGTAAACTCTAGCCACCA 59.093 52.381 0.00 0.00 0.00 4.17
2146 8115 4.377839 TTTCTTCAGATGGAGCTAGTCG 57.622 45.455 0.00 0.00 0.00 4.18
2296 8276 9.599322 GTTCAAGTAACTGTGATCTTAAACATG 57.401 33.333 0.00 0.00 35.05 3.21
2515 8497 5.207768 GTGTCAGTGATTGCTAGTTTGTTG 58.792 41.667 0.00 0.00 0.00 3.33
2575 8619 1.071385 CTGAAATAGATGGCCGAGGCT 59.929 52.381 14.33 0.00 41.60 4.58
2685 8795 3.554692 CACGGAAGGTGCGCGATC 61.555 66.667 12.10 0.28 40.33 3.69
2762 8872 4.404640 TGCTGTTAGAGGTATATAGGCGT 58.595 43.478 0.00 0.00 0.00 5.68
2763 9544 4.458295 TGCTGTTAGAGGTATATAGGCGTC 59.542 45.833 0.00 0.00 0.00 5.19
2820 9602 1.623811 AGATTGACACCTAGGCGTTGT 59.376 47.619 9.30 5.87 0.00 3.32
2848 9632 1.304134 GTGGCAAAGGGGTAGTGGG 60.304 63.158 0.00 0.00 0.00 4.61
2861 9645 0.325860 TAGTGGGGGAATAGGTGCGT 60.326 55.000 0.00 0.00 0.00 5.24
2958 9742 2.615912 CAGAATAGTAGCCAGCCAAAGC 59.384 50.000 0.00 0.00 40.32 3.51
3002 9786 0.829602 TTTCCCAAATTGAGGCGGCA 60.830 50.000 13.08 0.00 0.00 5.69
3050 9835 1.065126 AGGAGGTTGTAGGCATGCTTC 60.065 52.381 18.92 8.84 0.00 3.86
3128 9914 3.073062 GGGGGCTATGATGAAGTACACAT 59.927 47.826 5.48 5.48 0.00 3.21
3129 9915 4.286032 GGGGGCTATGATGAAGTACACATA 59.714 45.833 0.00 0.00 0.00 2.29
3130 9916 5.238583 GGGGCTATGATGAAGTACACATAC 58.761 45.833 0.00 0.00 0.00 2.39
3131 9917 5.012148 GGGGCTATGATGAAGTACACATACT 59.988 44.000 0.00 0.00 43.91 2.12
3132 9918 6.159988 GGGCTATGATGAAGTACACATACTC 58.840 44.000 0.00 0.00 41.00 2.59
3133 9919 6.159988 GGCTATGATGAAGTACACATACTCC 58.840 44.000 0.00 0.00 41.00 3.85
3134 9920 6.015010 GGCTATGATGAAGTACACATACTCCT 60.015 42.308 0.00 0.00 41.00 3.69
3135 9921 7.437748 GCTATGATGAAGTACACATACTCCTT 58.562 38.462 0.00 0.00 41.00 3.36
3136 9922 7.596995 GCTATGATGAAGTACACATACTCCTTC 59.403 40.741 0.00 0.00 41.00 3.46
3137 9923 6.222038 TGATGAAGTACACATACTCCTTCC 57.778 41.667 0.00 0.00 41.00 3.46
3138 9924 4.713824 TGAAGTACACATACTCCTTCCG 57.286 45.455 0.00 0.00 41.00 4.30
3139 9925 4.084287 TGAAGTACACATACTCCTTCCGT 58.916 43.478 0.00 0.00 41.00 4.69
3140 9926 4.525487 TGAAGTACACATACTCCTTCCGTT 59.475 41.667 0.00 0.00 41.00 4.44
3141 9927 4.715527 AGTACACATACTCCTTCCGTTC 57.284 45.455 0.00 0.00 36.97 3.95
3142 9928 3.446516 AGTACACATACTCCTTCCGTTCC 59.553 47.826 0.00 0.00 36.97 3.62
3143 9929 1.203994 ACACATACTCCTTCCGTTCCG 59.796 52.381 0.00 0.00 0.00 4.30
3144 9930 1.475280 CACATACTCCTTCCGTTCCGA 59.525 52.381 0.00 0.00 0.00 4.55
3145 9931 2.094390 CACATACTCCTTCCGTTCCGAA 60.094 50.000 0.00 0.00 0.00 4.30
3146 9932 2.764572 ACATACTCCTTCCGTTCCGAAT 59.235 45.455 0.00 0.00 0.00 3.34
3147 9933 3.197116 ACATACTCCTTCCGTTCCGAATT 59.803 43.478 0.00 0.00 0.00 2.17
3148 9934 4.403432 ACATACTCCTTCCGTTCCGAATTA 59.597 41.667 0.00 0.00 0.00 1.40
3149 9935 3.242549 ACTCCTTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
3150 9936 2.830321 ACTCCTTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
3151 9937 3.260128 ACTCCTTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
3152 9938 3.592059 TCCTTCCGTTCCGAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
3153 9939 3.007182 TCCTTCCGTTCCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
3154 9940 3.370061 CCTTCCGTTCCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
3155 9941 2.598589 TCCGTTCCGAATTACTTGTCG 58.401 47.619 0.00 0.00 37.01 4.35
3156 9942 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
3157 9943 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
3158 9944 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
3159 9945 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
3160 9946 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
3161 9947 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
3162 9948 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
3163 9949 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
3164 9950 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
3165 9951 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
3166 9952 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
3167 9953 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
3168 9954 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
3169 9955 2.027192 ACTTGTCGCAGGTATGGATGTT 60.027 45.455 0.00 0.00 0.00 2.71
3170 9956 3.196901 ACTTGTCGCAGGTATGGATGTTA 59.803 43.478 0.00 0.00 0.00 2.41
3262 10051 4.037446 GTCCTTCAGATCACTAGGTAGCTG 59.963 50.000 4.27 5.71 0.00 4.24
3349 10145 8.503458 AATCGATCAATTGATCTGTCTTTTCT 57.497 30.769 34.33 12.65 46.58 2.52
3364 10160 3.307782 TCTTTTCTTTTTCGTCGCTCGTT 59.692 39.130 0.00 0.00 40.80 3.85
3377 10173 1.149148 GCTCGTTGGTTCTGTCTTCC 58.851 55.000 0.00 0.00 0.00 3.46
3391 10187 1.066587 CTTCCTCGTCTCATCGGCC 59.933 63.158 0.00 0.00 0.00 6.13
3392 10188 2.356818 CTTCCTCGTCTCATCGGCCC 62.357 65.000 0.00 0.00 0.00 5.80
3393 10189 4.271816 CCTCGTCTCATCGGCCCG 62.272 72.222 0.00 0.00 0.00 6.13
3394 10190 3.518998 CTCGTCTCATCGGCCCGT 61.519 66.667 1.63 0.00 0.00 5.28
3395 10191 3.471244 CTCGTCTCATCGGCCCGTC 62.471 68.421 1.63 0.00 0.00 4.79
3396 10192 4.570663 CGTCTCATCGGCCCGTCC 62.571 72.222 1.63 0.00 0.00 4.79
3397 10193 4.222847 GTCTCATCGGCCCGTCCC 62.223 72.222 1.63 0.00 0.00 4.46
3398 10194 4.458829 TCTCATCGGCCCGTCCCT 62.459 66.667 1.63 0.00 0.00 4.20
3535 10363 3.243336 GCCGATTCAGTACGTATCCATC 58.757 50.000 0.00 0.00 0.00 3.51
3598 10558 8.234136 AGTACGTCTATTCAACTATTCATCCA 57.766 34.615 0.00 0.00 0.00 3.41
3599 10559 8.861086 AGTACGTCTATTCAACTATTCATCCAT 58.139 33.333 0.00 0.00 0.00 3.41
3600 10560 7.953158 ACGTCTATTCAACTATTCATCCATG 57.047 36.000 0.00 0.00 0.00 3.66
3601 10561 7.726216 ACGTCTATTCAACTATTCATCCATGA 58.274 34.615 0.00 0.00 34.44 3.07
3602 10562 8.370940 ACGTCTATTCAACTATTCATCCATGAT 58.629 33.333 0.00 0.00 36.56 2.45
3603 10563 8.867935 CGTCTATTCAACTATTCATCCATGATC 58.132 37.037 0.00 0.00 36.56 2.92
3604 10564 9.160496 GTCTATTCAACTATTCATCCATGATCC 57.840 37.037 0.00 0.00 36.56 3.36
3605 10565 8.883302 TCTATTCAACTATTCATCCATGATCCA 58.117 33.333 0.00 0.00 36.56 3.41
3606 10566 9.682465 CTATTCAACTATTCATCCATGATCCAT 57.318 33.333 0.00 0.00 36.56 3.41
3607 10567 7.991084 TTCAACTATTCATCCATGATCCATC 57.009 36.000 0.00 0.00 36.56 3.51
3608 10568 6.479006 TCAACTATTCATCCATGATCCATCC 58.521 40.000 0.00 0.00 36.56 3.51
3609 10569 5.447778 ACTATTCATCCATGATCCATCCC 57.552 43.478 0.00 0.00 36.56 3.85
3610 10570 3.752359 ATTCATCCATGATCCATCCCC 57.248 47.619 0.00 0.00 36.56 4.81
3611 10571 1.375610 TCATCCATGATCCATCCCCC 58.624 55.000 0.00 0.00 0.00 5.40
3612 10572 1.078115 CATCCATGATCCATCCCCCA 58.922 55.000 0.00 0.00 0.00 4.96
3613 10573 1.430075 CATCCATGATCCATCCCCCAA 59.570 52.381 0.00 0.00 0.00 4.12
3614 10574 1.850923 TCCATGATCCATCCCCCAAT 58.149 50.000 0.00 0.00 0.00 3.16
3615 10575 2.154701 TCCATGATCCATCCCCCAATT 58.845 47.619 0.00 0.00 0.00 2.32
3616 10576 2.523571 TCCATGATCCATCCCCCAATTT 59.476 45.455 0.00 0.00 0.00 1.82
3617 10577 2.901839 CCATGATCCATCCCCCAATTTC 59.098 50.000 0.00 0.00 0.00 2.17
3618 10578 3.578978 CATGATCCATCCCCCAATTTCA 58.421 45.455 0.00 0.00 0.00 2.69
3619 10579 3.317455 TGATCCATCCCCCAATTTCAG 57.683 47.619 0.00 0.00 0.00 3.02
3620 10580 2.858133 TGATCCATCCCCCAATTTCAGA 59.142 45.455 0.00 0.00 0.00 3.27
3621 10581 3.468244 TGATCCATCCCCCAATTTCAGAT 59.532 43.478 0.00 0.00 0.00 2.90
3622 10582 4.078454 TGATCCATCCCCCAATTTCAGATT 60.078 41.667 0.00 0.00 0.00 2.40
3623 10583 4.351110 TCCATCCCCCAATTTCAGATTT 57.649 40.909 0.00 0.00 0.00 2.17
3624 10584 4.697798 TCCATCCCCCAATTTCAGATTTT 58.302 39.130 0.00 0.00 0.00 1.82
3625 10585 4.716287 TCCATCCCCCAATTTCAGATTTTC 59.284 41.667 0.00 0.00 0.00 2.29
3626 10586 4.470664 CCATCCCCCAATTTCAGATTTTCA 59.529 41.667 0.00 0.00 0.00 2.69
3627 10587 5.395990 CCATCCCCCAATTTCAGATTTTCAG 60.396 44.000 0.00 0.00 0.00 3.02
3628 10588 4.750941 TCCCCCAATTTCAGATTTTCAGT 58.249 39.130 0.00 0.00 0.00 3.41
3629 10589 5.898120 TCCCCCAATTTCAGATTTTCAGTA 58.102 37.500 0.00 0.00 0.00 2.74
3630 10590 5.951747 TCCCCCAATTTCAGATTTTCAGTAG 59.048 40.000 0.00 0.00 0.00 2.57
3631 10591 5.716703 CCCCCAATTTCAGATTTTCAGTAGT 59.283 40.000 0.00 0.00 0.00 2.73
3632 10592 6.211384 CCCCCAATTTCAGATTTTCAGTAGTT 59.789 38.462 0.00 0.00 0.00 2.24
3633 10593 7.256296 CCCCCAATTTCAGATTTTCAGTAGTTT 60.256 37.037 0.00 0.00 0.00 2.66
3634 10594 8.150296 CCCCAATTTCAGATTTTCAGTAGTTTT 58.850 33.333 0.00 0.00 0.00 2.43
3635 10595 9.546428 CCCAATTTCAGATTTTCAGTAGTTTTT 57.454 29.630 0.00 0.00 0.00 1.94
3800 10788 8.383619 GTTCCGATCATCCGATCTATAAATTTG 58.616 37.037 0.00 0.00 45.11 2.32
3907 10896 8.595362 AAAGGGAGAAGAAAGAAAGAAAGAAA 57.405 30.769 0.00 0.00 0.00 2.52
3908 10897 7.815840 AGGGAGAAGAAAGAAAGAAAGAAAG 57.184 36.000 0.00 0.00 0.00 2.62
3909 10898 7.578203 AGGGAGAAGAAAGAAAGAAAGAAAGA 58.422 34.615 0.00 0.00 0.00 2.52
3910 10899 8.055790 AGGGAGAAGAAAGAAAGAAAGAAAGAA 58.944 33.333 0.00 0.00 0.00 2.52
4031 11024 2.907910 CTTGAGGAAGCATTTGTCGG 57.092 50.000 0.00 0.00 0.00 4.79
4034 11027 2.972625 TGAGGAAGCATTTGTCGGTAG 58.027 47.619 0.00 0.00 0.00 3.18
4080 11073 4.522971 GGAACGCATCCTCAGGAC 57.477 61.111 0.00 0.00 45.56 3.85
4127 11120 1.531149 GTTGCACGTTCTACTGCACAT 59.469 47.619 0.00 0.00 43.07 3.21
4148 11141 4.991153 TGATCTGCACCTTAGTCTGTAG 57.009 45.455 0.00 0.00 0.00 2.74
4189 11185 3.887110 AGCCAAGGTTGTTAGTGGTTAAC 59.113 43.478 0.00 0.00 41.68 2.01
4215 11213 3.416156 TGCATGCCTTGTTGTATGTACA 58.584 40.909 16.68 0.00 0.00 2.90
4233 11231 5.407502 TGTACACTGTCAACGGATGAATAG 58.592 41.667 0.00 0.00 40.50 1.73
4251 11249 9.118300 GATGAATAGAACTGTCAATTCTTCCAT 57.882 33.333 1.25 4.04 37.57 3.41
4254 11252 9.171877 GAATAGAACTGTCAATTCTTCCATTCT 57.828 33.333 1.25 0.00 37.57 2.40
4293 11291 5.008415 ACAAAGACAAGAGAGACTGCAATTG 59.992 40.000 0.00 0.00 0.00 2.32
4306 11304 1.397390 GCAATTGGAGGGAGGCCATG 61.397 60.000 5.01 0.00 34.90 3.66
4310 11308 2.153898 TTGGAGGGAGGCCATGTTGG 62.154 60.000 5.01 0.00 41.55 3.77
4314 11312 1.215423 GAGGGAGGCCATGTTGGTTAT 59.785 52.381 5.01 0.00 40.46 1.89
4572 11571 8.929827 TGCCATCAGAATATTGTTGTTTAATG 57.070 30.769 0.00 0.00 0.00 1.90
4612 11611 9.606631 AACTATCACTTAAGACTGAATCCATTC 57.393 33.333 10.09 0.00 37.31 2.67
4687 11803 0.170561 GTCAAGCTTGCCTGCTGATG 59.829 55.000 21.99 0.00 43.24 3.07
4769 11919 2.160219 TGCACAAGAAATGATCGCAGTC 59.840 45.455 0.00 0.00 31.80 3.51
4773 11923 2.029838 AGAAATGATCGCAGTCCCAC 57.970 50.000 0.00 0.00 0.00 4.61
4784 11934 2.062070 AGTCCCACTGAAGCTCCAC 58.938 57.895 0.00 0.00 0.00 4.02
4835 11985 0.984109 GAATGAAATGCCACAACGCG 59.016 50.000 3.53 3.53 0.00 6.01
4857 12007 2.636830 ACTGCGATCCTGAATTTCTGG 58.363 47.619 14.43 14.43 36.89 3.86
4869 12019 6.833416 TCCTGAATTTCTGGTTATGGTTATGG 59.167 38.462 18.52 0.00 36.89 2.74
5034 12184 1.499056 CGTCTGGCTGTTCATGTGC 59.501 57.895 0.00 0.00 0.00 4.57
5037 12187 0.953727 TCTGGCTGTTCATGTGCAAC 59.046 50.000 0.00 0.00 37.35 4.17
5103 12253 3.119602 CCTGAACCTTGATGCAATGTCTG 60.120 47.826 0.00 0.00 0.00 3.51
5105 12255 3.253921 TGAACCTTGATGCAATGTCTGTG 59.746 43.478 0.00 0.00 0.00 3.66
5114 12264 4.717233 TGCAATGTCTGTGAAGTTTTGT 57.283 36.364 0.00 0.00 0.00 2.83
5115 12265 4.422840 TGCAATGTCTGTGAAGTTTTGTG 58.577 39.130 0.00 0.00 0.00 3.33
5122 12272 2.923020 CTGTGAAGTTTTGTGGTGTTGC 59.077 45.455 0.00 0.00 0.00 4.17
5136 12286 3.243941 TGGTGTTGCGTAACTGTATGTCT 60.244 43.478 17.37 0.00 37.68 3.41
5137 12287 4.022155 TGGTGTTGCGTAACTGTATGTCTA 60.022 41.667 17.37 0.00 37.68 2.59
5163 12313 3.245284 CCTGAATATTGACACGCCGTAAG 59.755 47.826 0.00 0.00 0.00 2.34
5180 12330 0.251077 AAGCCTGCAGTCCTTGGAAG 60.251 55.000 13.81 0.00 0.00 3.46
5181 12331 1.073897 GCCTGCAGTCCTTGGAAGT 59.926 57.895 13.81 0.00 0.00 3.01
5182 12332 0.538287 GCCTGCAGTCCTTGGAAGTT 60.538 55.000 13.81 0.00 0.00 2.66
5183 12333 1.242076 CCTGCAGTCCTTGGAAGTTG 58.758 55.000 13.81 0.00 0.00 3.16
5187 12337 2.306847 GCAGTCCTTGGAAGTTGGAAA 58.693 47.619 0.00 0.00 0.00 3.13
5237 12454 4.722346 GCGCTCGTGTTCTTCTTTTATCTG 60.722 45.833 0.00 0.00 0.00 2.90
5334 12556 2.948979 TGATCGGCATCCATGGTTAAAC 59.051 45.455 12.58 0.00 0.00 2.01
5357 12579 6.053005 ACTGAACTTTGACTCCAATACGAAA 58.947 36.000 0.00 0.00 31.46 3.46
5365 12587 4.041198 TGACTCCAATACGAAAAAGTCCCT 59.959 41.667 0.00 0.00 33.79 4.20
5366 12588 4.576879 ACTCCAATACGAAAAAGTCCCTC 58.423 43.478 0.00 0.00 0.00 4.30
5367 12589 4.286291 ACTCCAATACGAAAAAGTCCCTCT 59.714 41.667 0.00 0.00 0.00 3.69
5368 12590 5.482878 ACTCCAATACGAAAAAGTCCCTCTA 59.517 40.000 0.00 0.00 0.00 2.43
5369 12591 6.156429 ACTCCAATACGAAAAAGTCCCTCTAT 59.844 38.462 0.00 0.00 0.00 1.98
5372 12594 8.711170 TCCAATACGAAAAAGTCCCTCTATAAT 58.289 33.333 0.00 0.00 0.00 1.28
5376 12598 7.845066 ACGAAAAAGTCCCTCTATAATTCAC 57.155 36.000 0.00 0.00 0.00 3.18
5378 12600 6.821665 CGAAAAAGTCCCTCTATAATTCACCA 59.178 38.462 0.00 0.00 0.00 4.17
5379 12601 7.499232 CGAAAAAGTCCCTCTATAATTCACCAT 59.501 37.037 0.00 0.00 0.00 3.55
5380 12602 8.525290 AAAAAGTCCCTCTATAATTCACCATG 57.475 34.615 0.00 0.00 0.00 3.66
5381 12603 5.234466 AGTCCCTCTATAATTCACCATGC 57.766 43.478 0.00 0.00 0.00 4.06
5382 12604 4.660303 AGTCCCTCTATAATTCACCATGCA 59.340 41.667 0.00 0.00 0.00 3.96
5383 12605 4.757149 GTCCCTCTATAATTCACCATGCAC 59.243 45.833 0.00 0.00 0.00 4.57
5384 12606 3.748048 CCCTCTATAATTCACCATGCACG 59.252 47.826 0.00 0.00 0.00 5.34
5385 12607 3.748048 CCTCTATAATTCACCATGCACGG 59.252 47.826 0.00 0.00 0.00 4.94
5386 12608 4.380531 CTCTATAATTCACCATGCACGGT 58.619 43.478 0.00 0.00 41.07 4.83
5387 12609 4.377021 TCTATAATTCACCATGCACGGTC 58.623 43.478 0.00 0.00 37.07 4.79
5388 12610 1.364721 TAATTCACCATGCACGGTCG 58.635 50.000 0.00 0.00 37.07 4.79
5389 12611 0.321210 AATTCACCATGCACGGTCGA 60.321 50.000 0.00 0.08 37.07 4.20
5396 12618 1.403647 CCATGCACGGTCGAAGAACTA 60.404 52.381 0.00 0.00 45.87 2.24
5397 12619 1.920574 CATGCACGGTCGAAGAACTAG 59.079 52.381 0.00 0.00 45.87 2.57
5398 12620 0.956633 TGCACGGTCGAAGAACTAGT 59.043 50.000 0.00 0.00 45.87 2.57
5399 12621 2.153645 TGCACGGTCGAAGAACTAGTA 58.846 47.619 0.00 0.00 45.87 1.82
5400 12622 2.161012 TGCACGGTCGAAGAACTAGTAG 59.839 50.000 0.00 0.00 45.87 2.57
5466 12688 7.085116 AGTATTTAAATCGATGTAGCTCTCGG 58.915 38.462 3.39 0.00 35.64 4.63
5531 12756 5.473039 ACAGAAACAAGAGCAAAATATGGC 58.527 37.500 0.00 0.00 0.00 4.40
5570 12888 6.653320 TCTGTATAAGGATGTTTGTTTCGCTT 59.347 34.615 0.00 0.00 0.00 4.68
5571 12889 6.837992 TGTATAAGGATGTTTGTTTCGCTTC 58.162 36.000 0.00 0.00 0.00 3.86
5572 12890 3.643159 AAGGATGTTTGTTTCGCTTCC 57.357 42.857 0.00 0.00 0.00 3.46
5574 12892 2.554032 AGGATGTTTGTTTCGCTTCCAG 59.446 45.455 0.00 0.00 0.00 3.86
5575 12893 2.351738 GGATGTTTGTTTCGCTTCCAGG 60.352 50.000 0.00 0.00 0.00 4.45
5613 12931 2.508439 GCAGTTGGCTAGCGCGTA 60.508 61.111 8.43 0.00 40.25 4.42
5614 12932 2.517450 GCAGTTGGCTAGCGCGTAG 61.517 63.158 8.43 9.57 40.25 3.51
5615 12933 1.878522 CAGTTGGCTAGCGCGTAGG 60.879 63.158 8.43 0.00 36.88 3.18
5616 12934 2.183555 GTTGGCTAGCGCGTAGGT 59.816 61.111 8.43 0.00 36.88 3.08
5617 12935 1.877165 GTTGGCTAGCGCGTAGGTC 60.877 63.158 8.43 0.00 36.88 3.85
5618 12936 2.050350 TTGGCTAGCGCGTAGGTCT 61.050 57.895 8.43 0.00 36.88 3.85
5619 12937 2.001361 TTGGCTAGCGCGTAGGTCTC 62.001 60.000 8.43 0.00 36.88 3.36
5620 12938 2.478890 GGCTAGCGCGTAGGTCTCA 61.479 63.158 8.43 0.00 36.88 3.27
5621 12939 1.655329 GCTAGCGCGTAGGTCTCAT 59.345 57.895 8.43 0.00 0.00 2.90
5623 12941 1.135916 GCTAGCGCGTAGGTCTCATAG 60.136 57.143 8.43 0.00 0.00 2.23
5626 12944 0.661780 GCGCGTAGGTCTCATAGCTG 60.662 60.000 8.43 0.00 37.13 4.24
5627 12945 0.945099 CGCGTAGGTCTCATAGCTGA 59.055 55.000 0.00 0.00 37.13 4.26
5628 12946 1.333931 CGCGTAGGTCTCATAGCTGAA 59.666 52.381 0.00 0.00 37.13 3.02
5669 13027 2.578495 CGTTGTGATGAAAAGCTCAGC 58.422 47.619 0.00 0.00 41.07 4.26
5733 13091 2.099141 TCCGAGCAAATCTGAACCTG 57.901 50.000 0.00 0.00 0.00 4.00
5735 13093 1.611673 CCGAGCAAATCTGAACCTGGT 60.612 52.381 0.00 0.00 0.00 4.00
5736 13094 1.734465 CGAGCAAATCTGAACCTGGTC 59.266 52.381 0.00 0.00 33.91 4.02
5737 13095 2.613977 CGAGCAAATCTGAACCTGGTCT 60.614 50.000 0.00 0.00 34.84 3.85
5738 13096 3.006247 GAGCAAATCTGAACCTGGTCTC 58.994 50.000 0.00 0.88 34.32 3.36
5739 13097 2.641815 AGCAAATCTGAACCTGGTCTCT 59.358 45.455 0.00 0.00 0.00 3.10
5740 13098 3.006247 GCAAATCTGAACCTGGTCTCTC 58.994 50.000 0.00 0.00 0.00 3.20
5741 13099 3.307339 GCAAATCTGAACCTGGTCTCTCT 60.307 47.826 0.00 0.00 0.00 3.10
5744 13102 3.080300 TCTGAACCTGGTCTCTCTCTC 57.920 52.381 0.00 0.00 0.00 3.20
5746 13104 3.016736 CTGAACCTGGTCTCTCTCTCTC 58.983 54.545 0.00 0.00 0.00 3.20
5748 13106 3.279434 GAACCTGGTCTCTCTCTCTCTC 58.721 54.545 0.00 0.00 0.00 3.20
5750 13108 2.505819 ACCTGGTCTCTCTCTCTCTCTC 59.494 54.545 0.00 0.00 0.00 3.20
5751 13109 2.774234 CCTGGTCTCTCTCTCTCTCTCT 59.226 54.545 0.00 0.00 0.00 3.10
5752 13110 3.181461 CCTGGTCTCTCTCTCTCTCTCTC 60.181 56.522 0.00 0.00 0.00 3.20
5753 13111 3.708631 CTGGTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
5754 13112 3.706594 TGGTCTCTCTCTCTCTCTCTCTC 59.293 52.174 0.00 0.00 0.00 3.20
5756 13114 5.141182 GGTCTCTCTCTCTCTCTCTCTCTA 58.859 50.000 0.00 0.00 0.00 2.43
5758 13116 6.071616 GGTCTCTCTCTCTCTCTCTCTCTATC 60.072 50.000 0.00 0.00 0.00 2.08
5759 13117 6.719370 GTCTCTCTCTCTCTCTCTCTCTATCT 59.281 46.154 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.573009 TCTGCACAGAATTCCATGAGGA 59.427 45.455 10.07 4.88 36.95 3.71
42 43 5.257082 TCACTAACAAAAGTTTTGAGCCC 57.743 39.130 30.20 0.00 0.00 5.19
48 49 6.273071 GCTCACCATCACTAACAAAAGTTTT 58.727 36.000 0.00 0.00 0.00 2.43
92 93 6.166279 TGACCTGTACAGTGATCTTCATTTC 58.834 40.000 21.18 4.57 0.00 2.17
105 106 1.800805 CACCAAGCTGACCTGTACAG 58.199 55.000 16.34 16.34 38.27 2.74
117 118 4.497473 TTAAGTTGTATGTGCACCAAGC 57.503 40.909 15.69 6.59 45.96 4.01
162 163 5.414360 TGAAGATTGTCTCAGTATGACTGC 58.586 41.667 1.60 0.00 45.54 4.40
173 174 8.883954 TCATGAACATAGATGAAGATTGTCTC 57.116 34.615 0.00 0.00 0.00 3.36
200 201 5.710513 TGAATCTGGATGTTTGTTTGAGG 57.289 39.130 0.00 0.00 0.00 3.86
208 209 2.026641 CCGGCATGAATCTGGATGTTT 58.973 47.619 0.00 0.00 31.56 2.83
218 219 1.272425 TGGTTTCTTCCCGGCATGAAT 60.272 47.619 0.00 0.00 0.00 2.57
246 247 7.606456 AGAACTTGGACATGATACGTGTAAAAT 59.394 33.333 0.00 0.00 0.00 1.82
247 248 6.932400 AGAACTTGGACATGATACGTGTAAAA 59.068 34.615 0.00 0.00 0.00 1.52
254 255 7.258441 TCTTAGAAGAACTTGGACATGATACG 58.742 38.462 0.00 0.00 30.73 3.06
303 304 3.693085 GGTCGATGTGAAGTAGACACCTA 59.307 47.826 0.00 0.00 37.45 3.08
324 325 0.515564 GGTTCGACCGACACATTTGG 59.484 55.000 0.00 0.00 34.29 3.28
341 342 7.170965 AGATGAACAAGTCTTATGTTGATGGT 58.829 34.615 0.00 0.00 40.90 3.55
398 477 7.065216 TGATGATGTTGACTTCGAAATCTTC 57.935 36.000 8.23 10.20 0.00 2.87
412 491 1.131126 GTGCGGGAGTTGATGATGTTG 59.869 52.381 0.00 0.00 0.00 3.33
433 512 3.042682 TCTAAACAAGGGGGCGATGATA 58.957 45.455 0.00 0.00 0.00 2.15
457 536 5.428253 TCAATCCCCTTTCTCTATTCGTTG 58.572 41.667 0.00 0.00 0.00 4.10
525 604 3.594453 GATGGCCCCATCTTGACAA 57.406 52.632 17.90 0.00 46.67 3.18
609 689 0.535328 TTTGGTCGTTGATCCGGCAA 60.535 50.000 0.00 0.00 33.17 4.52
627 707 1.160137 GCGCTTCTCAGAATGTGGTT 58.840 50.000 0.00 0.00 37.40 3.67
652 733 2.047274 CTGGCCATGTTCGACGGT 60.047 61.111 5.51 0.00 0.00 4.83
656 737 2.350895 CACCCTGGCCATGTTCGA 59.649 61.111 5.51 0.00 0.00 3.71
709 791 6.205853 TGCAATGTGAAACCTAATCTAAACGT 59.794 34.615 0.00 0.00 34.36 3.99
838 940 1.173043 CTTGCAAAATCCCACGCCTA 58.827 50.000 0.00 0.00 0.00 3.93
842 944 1.336440 TGTGACTTGCAAAATCCCACG 59.664 47.619 0.00 0.00 0.00 4.94
845 947 3.507233 TCAGATGTGACTTGCAAAATCCC 59.493 43.478 0.00 0.00 0.00 3.85
852 954 4.581868 TGATGATTCAGATGTGACTTGCA 58.418 39.130 0.00 0.00 30.10 4.08
1185 3344 1.014352 CGCGTTATTGAAGGGGGAAG 58.986 55.000 0.00 0.00 31.67 3.46
1362 6571 2.161486 GCTGCTAGAACGCCACTCG 61.161 63.158 0.00 0.00 45.38 4.18
1367 6576 2.512515 CCCTGCTGCTAGAACGCC 60.513 66.667 0.00 0.00 0.00 5.68
1370 6579 1.451028 CCTGCCCTGCTGCTAGAAC 60.451 63.158 0.00 0.00 0.00 3.01
1459 7042 1.313812 ATCGACCACCGTGTCTCCTC 61.314 60.000 0.00 0.00 39.75 3.71
1496 7079 3.618594 TCAGCAGAGCAAACGTATCATTC 59.381 43.478 0.00 0.00 0.00 2.67
1541 7129 1.740296 CCCGTAAACACGCCCTCTG 60.740 63.158 0.00 0.00 0.00 3.35
1542 7130 1.262640 ATCCCGTAAACACGCCCTCT 61.263 55.000 0.00 0.00 0.00 3.69
1593 7182 2.672195 CGGCCATTTTCAGAAAAGAGGC 60.672 50.000 29.82 29.82 46.40 4.70
1676 7390 2.704572 AGAGAAGCCACATTGTGTAGC 58.295 47.619 15.34 12.09 0.00 3.58
1783 7716 5.047847 GCTTGGCGAACTTATGTGAGTATA 58.952 41.667 0.00 0.00 0.00 1.47
1850 7783 6.789268 TCTTCTTCCAAATGGTAAGATCCAA 58.211 36.000 12.17 1.95 41.09 3.53
1890 7829 5.621197 TTTCAATTAGAATGTCGTGGTGG 57.379 39.130 0.00 0.00 35.83 4.61
1896 7835 7.196331 GGAGGGAATTTTCAATTAGAATGTCG 58.804 38.462 0.00 0.00 35.83 4.35
1914 7853 6.086775 ACAGTTAACTAGTTAAGGGAGGGAA 58.913 40.000 24.97 3.22 35.90 3.97
1916 7855 7.125356 ACATACAGTTAACTAGTTAAGGGAGGG 59.875 40.741 24.97 16.45 35.90 4.30
1998 7960 1.302192 ACCCACCCGTGTTCAATCG 60.302 57.895 0.00 0.00 0.00 3.34
2002 7964 1.628238 AACTCACCCACCCGTGTTCA 61.628 55.000 0.00 0.00 35.18 3.18
2043 8005 0.165944 CAAACCGAACGCTAGCTTGG 59.834 55.000 13.93 10.81 0.00 3.61
2045 8007 0.882927 TGCAAACCGAACGCTAGCTT 60.883 50.000 13.93 0.00 0.00 3.74
2103 8072 5.552870 AAGAAAACTAGAGTTCAGCCAGA 57.447 39.130 0.00 0.00 37.25 3.86
2146 8115 3.768406 TGTGACACATTGCAAACAACTC 58.232 40.909 1.71 0.00 38.99 3.01
2251 8230 5.559770 TGAACTGCTGATTTCAGGATAACA 58.440 37.500 9.49 4.50 43.35 2.41
2252 8231 6.150140 ACTTGAACTGCTGATTTCAGGATAAC 59.850 38.462 9.49 2.29 43.35 1.89
2282 8262 8.182227 GCCTAAAAGTACCATGTTTAAGATCAC 58.818 37.037 0.00 0.00 0.00 3.06
2290 8270 6.072119 GCTACAAGCCTAAAAGTACCATGTTT 60.072 38.462 0.00 0.00 34.48 2.83
2296 8276 5.646360 TGAATGCTACAAGCCTAAAAGTACC 59.354 40.000 0.00 0.00 41.51 3.34
2575 8619 9.043079 CGTCTACTCTGATGATGTAACTAACTA 57.957 37.037 0.00 0.00 0.00 2.24
2665 8714 3.554692 CGCGCACCTTCCGTGATC 61.555 66.667 8.75 0.00 46.20 2.92
2685 8795 1.758862 GGAAGATTTGGGATGCAAGGG 59.241 52.381 0.00 0.00 0.00 3.95
2762 8872 4.473196 TCAATACTATTTGGGAGGTGCAGA 59.527 41.667 0.00 0.00 0.00 4.26
2763 9544 4.780815 TCAATACTATTTGGGAGGTGCAG 58.219 43.478 0.00 0.00 0.00 4.41
2820 9602 0.958091 CCTTTGCCACACGGATTTGA 59.042 50.000 0.00 0.00 0.00 2.69
2848 9632 1.949465 CCAACTACGCACCTATTCCC 58.051 55.000 0.00 0.00 0.00 3.97
2861 9645 1.522092 CTGCCCGAGATGCCAACTA 59.478 57.895 0.00 0.00 0.00 2.24
2958 9742 0.310854 GTGCCGAACAAAGTCAAGGG 59.689 55.000 0.00 0.00 0.00 3.95
3002 9786 2.304180 CGAGGAGGCCATAGATCCAAAT 59.696 50.000 5.01 0.00 35.45 2.32
3112 9897 7.255486 CGGAAGGAGTATGTGTACTTCATCATA 60.255 40.741 0.00 1.19 41.19 2.15
3138 9924 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
3139 9925 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
3140 9926 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
3141 9927 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
3142 9928 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
3143 9929 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
3144 9930 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
3145 9931 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
3146 9932 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
3147 9933 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
3148 9934 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
3149 9935 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
3150 9936 2.779755 AACATCCATACCTGCGACAA 57.220 45.000 0.00 0.00 0.00 3.18
3151 9937 3.897141 TTAACATCCATACCTGCGACA 57.103 42.857 0.00 0.00 0.00 4.35
3152 9938 9.464714 CTATATATTAACATCCATACCTGCGAC 57.535 37.037 0.00 0.00 0.00 5.19
3153 9939 9.197306 ACTATATATTAACATCCATACCTGCGA 57.803 33.333 0.00 0.00 0.00 5.10
3240 10029 4.079730 TCAGCTACCTAGTGATCTGAAGGA 60.080 45.833 12.83 0.00 33.16 3.36
3285 10074 1.896220 TCAATCAGTCTTTTGCGGCT 58.104 45.000 0.00 0.00 0.00 5.52
3349 10145 1.004715 GAACCAACGAGCGACGAAAAA 60.005 47.619 12.62 0.00 45.77 1.94
3364 10160 1.887198 GAGACGAGGAAGACAGAACCA 59.113 52.381 0.00 0.00 0.00 3.67
3377 10173 3.471244 GACGGGCCGATGAGACGAG 62.471 68.421 35.78 0.00 35.09 4.18
3393 10189 3.519930 GAGGAGCGACGGAGGGAC 61.520 72.222 0.00 0.00 0.00 4.46
3535 10363 4.174704 TCTGAAATTGAGGGATGGATGG 57.825 45.455 0.00 0.00 0.00 3.51
3597 10557 3.576982 CTGAAATTGGGGGATGGATCATG 59.423 47.826 0.00 0.00 0.00 3.07
3598 10558 3.468244 TCTGAAATTGGGGGATGGATCAT 59.532 43.478 0.00 0.00 0.00 2.45
3599 10559 2.858133 TCTGAAATTGGGGGATGGATCA 59.142 45.455 0.00 0.00 0.00 2.92
3600 10560 3.600448 TCTGAAATTGGGGGATGGATC 57.400 47.619 0.00 0.00 0.00 3.36
3601 10561 4.564616 AATCTGAAATTGGGGGATGGAT 57.435 40.909 0.00 0.00 0.00 3.41
3602 10562 4.351110 AAATCTGAAATTGGGGGATGGA 57.649 40.909 0.00 0.00 0.00 3.41
3603 10563 4.470664 TGAAAATCTGAAATTGGGGGATGG 59.529 41.667 0.00 0.00 0.00 3.51
3604 10564 5.188359 ACTGAAAATCTGAAATTGGGGGATG 59.812 40.000 0.00 0.00 0.00 3.51
3605 10565 5.344566 ACTGAAAATCTGAAATTGGGGGAT 58.655 37.500 0.00 0.00 0.00 3.85
3606 10566 4.750941 ACTGAAAATCTGAAATTGGGGGA 58.249 39.130 0.00 0.00 0.00 4.81
3607 10567 5.716703 ACTACTGAAAATCTGAAATTGGGGG 59.283 40.000 0.00 0.00 0.00 5.40
3608 10568 6.840780 ACTACTGAAAATCTGAAATTGGGG 57.159 37.500 0.00 0.00 0.00 4.96
3609 10569 9.546428 AAAAACTACTGAAAATCTGAAATTGGG 57.454 29.630 0.00 0.00 0.00 4.12
3635 10595 9.742144 GGATGGATAGTAGAATAGACAGACTAA 57.258 37.037 0.00 0.00 34.56 2.24
3636 10596 8.891501 TGGATGGATAGTAGAATAGACAGACTA 58.108 37.037 0.00 0.00 35.42 2.59
3637 10597 7.760607 TGGATGGATAGTAGAATAGACAGACT 58.239 38.462 0.00 0.00 0.00 3.24
3638 10598 8.465999 CATGGATGGATAGTAGAATAGACAGAC 58.534 40.741 0.00 0.00 0.00 3.51
3639 10599 8.394040 TCATGGATGGATAGTAGAATAGACAGA 58.606 37.037 0.00 0.00 0.00 3.41
3640 10600 8.586879 TCATGGATGGATAGTAGAATAGACAG 57.413 38.462 0.00 0.00 0.00 3.51
3641 10601 9.552695 AATCATGGATGGATAGTAGAATAGACA 57.447 33.333 0.00 0.00 0.00 3.41
3643 10603 9.774071 TGAATCATGGATGGATAGTAGAATAGA 57.226 33.333 0.00 0.00 0.00 1.98
3646 10606 8.492782 GGATGAATCATGGATGGATAGTAGAAT 58.507 37.037 0.00 0.00 0.00 2.40
3647 10607 7.092712 GGGATGAATCATGGATGGATAGTAGAA 60.093 40.741 0.00 0.00 0.00 2.10
3648 10608 6.385176 GGGATGAATCATGGATGGATAGTAGA 59.615 42.308 0.00 0.00 0.00 2.59
3649 10609 6.157471 TGGGATGAATCATGGATGGATAGTAG 59.843 42.308 0.00 0.00 0.00 2.57
3650 10610 6.031386 TGGGATGAATCATGGATGGATAGTA 58.969 40.000 0.00 0.00 0.00 1.82
3651 10611 4.853856 TGGGATGAATCATGGATGGATAGT 59.146 41.667 0.00 0.00 0.00 2.12
3652 10612 5.446260 TGGGATGAATCATGGATGGATAG 57.554 43.478 0.00 0.00 0.00 2.08
3653 10613 5.493250 TCATGGGATGAATCATGGATGGATA 59.507 40.000 0.00 0.00 40.63 2.59
3654 10614 4.293901 TCATGGGATGAATCATGGATGGAT 59.706 41.667 0.00 0.00 40.63 3.41
3655 10615 3.658705 TCATGGGATGAATCATGGATGGA 59.341 43.478 0.00 0.00 40.63 3.41
3656 10616 4.042271 TCATGGGATGAATCATGGATGG 57.958 45.455 0.00 0.00 40.63 3.51
3907 10896 7.286316 AGTGGTTGAATTTTCAGATCACTTTCT 59.714 33.333 14.07 0.00 38.78 2.52
3908 10897 7.380602 CAGTGGTTGAATTTTCAGATCACTTTC 59.619 37.037 15.81 0.00 39.29 2.62
3909 10898 7.068593 TCAGTGGTTGAATTTTCAGATCACTTT 59.931 33.333 15.81 2.96 39.29 2.66
3910 10899 6.547141 TCAGTGGTTGAATTTTCAGATCACTT 59.453 34.615 15.81 6.10 39.29 3.16
4031 11024 3.142174 ACTTCCAGTTTGAGCTTGCTAC 58.858 45.455 0.00 0.00 0.00 3.58
4034 11027 1.268079 GGACTTCCAGTTTGAGCTTGC 59.732 52.381 0.00 0.00 35.64 4.01
4080 11073 1.066215 TGTGCATGTGGGTGTAGCTAG 60.066 52.381 0.00 0.00 0.00 3.42
4127 11120 3.701542 CCTACAGACTAAGGTGCAGATCA 59.298 47.826 0.00 0.00 0.00 2.92
4148 11141 3.459145 GCTAAACTCTAGCTAACAGCCC 58.541 50.000 0.00 0.00 43.77 5.19
4215 11213 5.171476 CAGTTCTATTCATCCGTTGACAGT 58.829 41.667 0.00 0.00 32.84 3.55
4233 11231 7.446001 AAGAGAATGGAAGAATTGACAGTTC 57.554 36.000 2.59 2.59 0.00 3.01
4251 11249 6.037172 GTCTTTGTTGCAGTGTAGAAAGAGAA 59.963 38.462 15.22 0.00 31.79 2.87
4254 11252 5.182487 TGTCTTTGTTGCAGTGTAGAAAGA 58.818 37.500 12.48 12.48 0.00 2.52
4293 11291 2.155197 AACCAACATGGCCTCCCTCC 62.155 60.000 3.32 0.00 42.67 4.30
4306 11304 3.006940 TGTGAGGAATCGCATAACCAAC 58.993 45.455 0.00 0.00 0.00 3.77
4310 11308 8.709386 ATATCTAATGTGAGGAATCGCATAAC 57.291 34.615 4.84 0.00 39.61 1.89
4314 11312 7.039714 AGTGTATATCTAATGTGAGGAATCGCA 60.040 37.037 0.00 0.00 34.42 5.10
4358 11357 6.354130 TCAACTGAGCCTAATATTTGGGTAC 58.646 40.000 18.58 13.10 34.08 3.34
4492 11491 1.202440 CCGCCAAATACCTACGCTACA 60.202 52.381 0.00 0.00 0.00 2.74
4497 11496 6.790285 ATTATTAACCGCCAAATACCTACG 57.210 37.500 0.00 0.00 0.00 3.51
4533 11532 2.424601 TGATGGCATCTTACAAGCAAGC 59.575 45.455 26.49 0.00 0.00 4.01
4572 11571 7.440523 AAGTGATAGTTGATTGGAGTTTGAC 57.559 36.000 0.00 0.00 0.00 3.18
4612 11611 6.841443 ACAGATAAGAAAGCGATGAAGATG 57.159 37.500 0.00 0.00 0.00 2.90
4687 11803 1.530013 AACTTGCAGCTCACCCATGC 61.530 55.000 0.00 0.00 40.40 4.06
4719 11835 0.902531 GTACTGGAGCAACTGGCCTA 59.097 55.000 3.32 0.00 46.50 3.93
4769 11919 0.109342 ACTTGTGGAGCTTCAGTGGG 59.891 55.000 0.00 0.00 0.00 4.61
4773 11923 3.249559 GTCTCAAACTTGTGGAGCTTCAG 59.750 47.826 0.00 0.00 0.00 3.02
4782 11932 3.199880 ACAGGGAGTCTCAAACTTGTG 57.800 47.619 1.47 0.00 38.74 3.33
4784 11934 3.142174 GGAACAGGGAGTCTCAAACTTG 58.858 50.000 1.47 0.00 38.74 3.16
4835 11985 3.557595 CCAGAAATTCAGGATCGCAGTAC 59.442 47.826 0.00 0.00 0.00 2.73
4857 12007 5.756833 CCTTCTCGTAACCCATAACCATAAC 59.243 44.000 0.00 0.00 0.00 1.89
4869 12019 9.931210 CATTTACATAATTTCCTTCTCGTAACC 57.069 33.333 0.00 0.00 0.00 2.85
5034 12184 6.001449 TGAAGATAGTTAATCCAGGGGTTG 57.999 41.667 0.00 0.00 34.90 3.77
5037 12187 5.366768 TCACTGAAGATAGTTAATCCAGGGG 59.633 44.000 0.00 0.00 34.90 4.79
5082 12232 3.504906 ACAGACATTGCATCAAGGTTCAG 59.495 43.478 0.00 0.00 38.49 3.02
5103 12253 1.917303 CGCAACACCACAAAACTTCAC 59.083 47.619 0.00 0.00 0.00 3.18
5105 12255 2.271821 ACGCAACACCACAAAACTTC 57.728 45.000 0.00 0.00 0.00 3.01
5114 12264 3.061322 GACATACAGTTACGCAACACCA 58.939 45.455 0.56 0.00 37.10 4.17
5115 12265 3.323243 AGACATACAGTTACGCAACACC 58.677 45.455 0.56 0.00 37.10 4.16
5136 12286 5.047590 ACGGCGTGTCAATATTCAGGATATA 60.048 40.000 13.76 0.00 30.65 0.86
5137 12287 4.245660 CGGCGTGTCAATATTCAGGATAT 58.754 43.478 0.00 0.00 32.19 1.63
5155 12305 3.188786 GACTGCAGGCTTACGGCG 61.189 66.667 19.93 4.80 43.71 6.46
5163 12313 0.538287 AACTTCCAAGGACTGCAGGC 60.538 55.000 19.93 16.59 0.00 4.85
5180 12330 3.004315 ACCAACATGATCGTGTTTCCAAC 59.996 43.478 27.01 0.00 40.17 3.77
5181 12331 3.218453 ACCAACATGATCGTGTTTCCAA 58.782 40.909 27.01 0.00 40.17 3.53
5182 12332 2.857483 ACCAACATGATCGTGTTTCCA 58.143 42.857 27.01 0.00 40.17 3.53
5183 12333 4.250464 TCTACCAACATGATCGTGTTTCC 58.750 43.478 27.01 0.00 40.17 3.13
5187 12337 4.191544 CCATTCTACCAACATGATCGTGT 58.808 43.478 14.99 14.99 0.00 4.49
5189 12339 3.206150 GCCATTCTACCAACATGATCGT 58.794 45.455 0.00 0.00 0.00 3.73
5190 12340 2.221749 CGCCATTCTACCAACATGATCG 59.778 50.000 0.00 0.00 0.00 3.69
5276 12496 4.643463 TGTACGCAAATACCTTCTTGGAA 58.357 39.130 0.00 0.00 39.71 3.53
5334 12556 6.539649 TTTCGTATTGGAGTCAAAGTTCAG 57.460 37.500 0.00 0.00 36.36 3.02
5357 12579 6.064717 GCATGGTGAATTATAGAGGGACTTT 58.935 40.000 0.00 0.00 41.55 2.66
5365 12587 4.377021 GACCGTGCATGGTGAATTATAGA 58.623 43.478 34.99 0.00 44.01 1.98
5366 12588 3.184379 CGACCGTGCATGGTGAATTATAG 59.816 47.826 34.99 11.27 44.01 1.31
5367 12589 3.127589 CGACCGTGCATGGTGAATTATA 58.872 45.455 34.99 0.00 44.01 0.98
5368 12590 1.939934 CGACCGTGCATGGTGAATTAT 59.060 47.619 34.99 8.67 44.01 1.28
5369 12591 1.066787 TCGACCGTGCATGGTGAATTA 60.067 47.619 34.99 12.24 44.01 1.40
5372 12594 0.948623 CTTCGACCGTGCATGGTGAA 60.949 55.000 34.99 29.92 44.01 3.18
5374 12596 0.948623 TTCTTCGACCGTGCATGGTG 60.949 55.000 34.99 24.37 44.01 4.17
5376 12598 0.670546 AGTTCTTCGACCGTGCATGG 60.671 55.000 23.83 23.83 0.00 3.66
5378 12600 1.544691 ACTAGTTCTTCGACCGTGCAT 59.455 47.619 0.00 0.00 0.00 3.96
5379 12601 0.956633 ACTAGTTCTTCGACCGTGCA 59.043 50.000 0.00 0.00 0.00 4.57
5380 12602 2.417933 TCTACTAGTTCTTCGACCGTGC 59.582 50.000 0.00 0.00 0.00 5.34
5381 12603 4.675190 TTCTACTAGTTCTTCGACCGTG 57.325 45.455 0.00 0.00 0.00 4.94
5382 12604 5.695851 TTTTCTACTAGTTCTTCGACCGT 57.304 39.130 0.00 0.00 0.00 4.83
5383 12605 8.744011 CATAATTTTCTACTAGTTCTTCGACCG 58.256 37.037 0.00 0.00 0.00 4.79
5384 12606 8.541312 GCATAATTTTCTACTAGTTCTTCGACC 58.459 37.037 0.00 0.00 0.00 4.79
5385 12607 9.084164 TGCATAATTTTCTACTAGTTCTTCGAC 57.916 33.333 0.00 0.00 0.00 4.20
5386 12608 9.817809 ATGCATAATTTTCTACTAGTTCTTCGA 57.182 29.630 0.00 0.00 0.00 3.71
5387 12609 9.855361 CATGCATAATTTTCTACTAGTTCTTCG 57.145 33.333 0.00 0.00 0.00 3.79
5445 12667 4.049186 GCCGAGAGCTACATCGATTTAAA 58.951 43.478 14.97 0.00 41.40 1.52
5466 12688 4.360405 TTCCCTTCCAAGGCCGGC 62.360 66.667 21.18 21.18 45.10 6.13
5524 12749 7.696981 ACAGATCTGAGGATAATTGCCATATT 58.303 34.615 29.27 0.00 31.46 1.28
5525 12750 7.268212 ACAGATCTGAGGATAATTGCCATAT 57.732 36.000 29.27 0.00 31.46 1.78
5570 12888 0.991355 ACCCCACTTGTTGTCCTGGA 60.991 55.000 0.00 0.00 0.00 3.86
5571 12889 0.823356 CACCCCACTTGTTGTCCTGG 60.823 60.000 0.00 0.00 0.00 4.45
5572 12890 0.823356 CCACCCCACTTGTTGTCCTG 60.823 60.000 0.00 0.00 0.00 3.86
5574 12892 1.106944 CACCACCCCACTTGTTGTCC 61.107 60.000 0.00 0.00 0.00 4.02
5575 12893 1.106944 CCACCACCCCACTTGTTGTC 61.107 60.000 0.00 0.00 0.00 3.18
5610 12928 4.106197 GTGTTTCAGCTATGAGACCTACG 58.894 47.826 0.00 0.00 39.28 3.51
5613 12931 4.093011 AGAGTGTTTCAGCTATGAGACCT 58.907 43.478 0.00 0.00 39.28 3.85
5614 12932 4.464069 AGAGTGTTTCAGCTATGAGACC 57.536 45.455 0.00 0.00 39.28 3.85
5615 12933 7.891183 TTTTAGAGTGTTTCAGCTATGAGAC 57.109 36.000 0.00 0.00 40.19 3.36
5616 12934 8.367911 TCTTTTTAGAGTGTTTCAGCTATGAGA 58.632 33.333 0.00 0.00 36.61 3.27
5617 12935 8.539770 TCTTTTTAGAGTGTTTCAGCTATGAG 57.460 34.615 0.00 0.00 36.61 2.90
5618 12936 8.367911 TCTCTTTTTAGAGTGTTTCAGCTATGA 58.632 33.333 0.00 0.00 37.23 2.15
5619 12937 8.439286 GTCTCTTTTTAGAGTGTTTCAGCTATG 58.561 37.037 0.00 0.00 37.23 2.23
5620 12938 7.604545 GGTCTCTTTTTAGAGTGTTTCAGCTAT 59.395 37.037 0.00 0.00 37.23 2.97
5621 12939 6.929606 GGTCTCTTTTTAGAGTGTTTCAGCTA 59.070 38.462 0.00 0.00 37.23 3.32
5623 12941 5.527582 TGGTCTCTTTTTAGAGTGTTTCAGC 59.472 40.000 0.00 0.00 37.23 4.26
5626 12944 5.050295 CGGTGGTCTCTTTTTAGAGTGTTTC 60.050 44.000 0.00 0.00 37.23 2.78
5627 12945 4.814771 CGGTGGTCTCTTTTTAGAGTGTTT 59.185 41.667 0.00 0.00 37.23 2.83
5628 12946 4.141779 ACGGTGGTCTCTTTTTAGAGTGTT 60.142 41.667 0.00 0.00 37.23 3.32
5714 13072 1.339055 CCAGGTTCAGATTTGCTCGGA 60.339 52.381 0.00 0.00 0.00 4.55
5733 13091 3.964031 AGAGAGAGAGAGAGAGAGAGACC 59.036 52.174 0.00 0.00 0.00 3.85
5735 13093 6.857848 AGATAGAGAGAGAGAGAGAGAGAGA 58.142 44.000 0.00 0.00 0.00 3.10
5736 13094 6.947733 AGAGATAGAGAGAGAGAGAGAGAGAG 59.052 46.154 0.00 0.00 0.00 3.20
5737 13095 6.857848 AGAGATAGAGAGAGAGAGAGAGAGA 58.142 44.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.