AutoCloner

Multiple sequence alignment - TraesCS1A01G326100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G326100	chr1A	100.000	2746	0	0	1	2746	516585158	516587903	0.000000e+00	5072.0
1	TraesCS1A01G326100	chr1A	88.966	290	27	4	367	655	517503157	517503442	1.210000e-93	353.0
2	TraesCS1A01G326100	chr1A	88.444	225	23	3	1907	2130	290653250	290653472	4.510000e-68	268.0
3	TraesCS1A01G326100	chr1A	78.947	152	17	8	1573	1724	516692621	516692757	3.770000e-14	89.8
4	TraesCS1A01G326100	chr1B	87.271	1964	140	40	1	1914	566979812	566981715	0.000000e+00	2141.0
5	TraesCS1A01G326100	chr1B	84.211	361	52	3	305	662	570482512	570482870	2.020000e-91	346.0
6	TraesCS1A01G326100	chr1B	87.719	171	17	2	2367	2534	602548730	602548899	2.160000e-46	196.0
7	TraesCS1A01G326100	chr1B	76.558	337	42	26	1412	1734	571445288	571444975	1.700000e-32	150.0
8	TraesCS1A01G326100	chr1B	79.429	175	16	12	1568	1734	571497624	571497462	3.740000e-19	106.0
9	TraesCS1A01G326100	chr1D	90.638	1207	53	22	724	1914	419993843	419995005	0.000000e+00	1548.0
10	TraesCS1A01G326100	chr1D	87.908	521	49	8	1	512	419986851	419987366	3.910000e-168	601.0
11	TraesCS1A01G326100	chr1D	82.258	496	66	13	169	651	421075613	421076099	2.550000e-110	409.0
12	TraesCS1A01G326100	chr1D	95.556	225	10	0	535	759	419993618	419993842	7.230000e-96	361.0
13	TraesCS1A01G326100	chr1D	84.663	163	15	5	2370	2524	487168049	487167889	1.320000e-33	154.0
14	TraesCS1A01G326100	chr1D	77.907	172	26	6	1561	1732	422933595	422933436	2.250000e-16	97.1
15	TraesCS1A01G326100	chr6A	97.236	832	5	2	1915	2746	498011469	498010656	0.000000e+00	1393.0
16	TraesCS1A01G326100	chr6A	86.164	159	19	2	2369	2524	553942081	553941923	4.700000e-38	169.0
17	TraesCS1A01G326100	chr2B	96.902	581	10	3	2166	2746	162520426	162519854	0.000000e+00	966.0
18	TraesCS1A01G326100	chr2B	98.370	184	3	0	1915	2098	162520782	162520599	9.480000e-85	324.0
19	TraesCS1A01G326100	chr2B	90.625	128	10	2	2412	2538	388695125	388695251	4.700000e-38	169.0
20	TraesCS1A01G326100	chr2B	84.177	158	21	2	2367	2524	726704575	726704728	1.700000e-32	150.0
21	TraesCS1A01G326100	chr3A	85.867	467	46	13	1911	2371	707351730	707352182	1.910000e-131	479.0
22	TraesCS1A01G326100	chr3A	94.714	227	9	3	2523	2746	38995290	38995064	1.560000e-92	350.0
23	TraesCS1A01G326100	chr3A	92.920	226	13	3	2523	2746	707352181	707352405	2.640000e-85	326.0
24	TraesCS1A01G326100	chr3A	83.041	342	39	17	1413	1748	565464499	565464827	2.670000e-75	292.0
25	TraesCS1A01G326100	chr7B	85.961	463	45	13	1915	2371	748666130	748665682	6.880000e-131	477.0
26	TraesCS1A01G326100	chr7B	93.722	223	12	2	2526	2746	748665680	748665458	1.580000e-87	333.0
27	TraesCS1A01G326100	chrUn	85.776	464	47	10	1915	2371	27337427	27336976	8.900000e-130	473.0
28	TraesCS1A01G326100	chrUn	95.067	223	9	2	2526	2746	27336974	27336752	1.560000e-92	350.0
29	TraesCS1A01G326100	chrUn	86.207	232	29	3	1907	2137	27335780	27336009	5.870000e-62	248.0
30	TraesCS1A01G326100	chr5D	83.974	468	50	15	1915	2377	385982070	385981623	2.530000e-115	425.0
31	TraesCS1A01G326100	chr5D	95.023	221	9	2	2528	2746	385981577	385981357	2.020000e-91	346.0
32	TraesCS1A01G326100	chr5D	81.146	419	59	11	1914	2329	124207003	124207404	4.410000e-83	318.0
33	TraesCS1A01G326100	chr5D	87.054	224	28	1	1914	2137	124208462	124208240	4.540000e-63	252.0
34	TraesCS1A01G326100	chr3B	83.382	343	36	18	1413	1748	553570757	553571085	5.750000e-77	298.0
35	TraesCS1A01G326100	chr3D	82.456	342	41	17	1413	1748	423389909	423389581	5.790000e-72	281.0
36	TraesCS1A01G326100	chr2D	93.210	162	10	1	2586	2746	33927632	33927471	1.270000e-58	237.0
37	TraesCS1A01G326100	chr4D	86.503	163	13	4	2370	2524	386984829	386984668	1.310000e-38	171.0
38	TraesCS1A01G326100	chr7A	85.366	164	14	8	2369	2524	247071196	247071357	7.870000e-36	161.0
39	TraesCS1A01G326100	chr6D	84.524	168	16	6	2365	2524	16510007	16509842	1.020000e-34	158.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G326100	chr1A	516585158	516587903	2745	False	5072.0	5072	100.0000	1	2746	1	chr1A.!!$F2	2745
1	TraesCS1A01G326100	chr1B	566979812	566981715	1903	False	2141.0	2141	87.2710	1	1914	1	chr1B.!!$F1	1913
2	TraesCS1A01G326100	chr1D	419993618	419995005	1387	False	954.5	1548	93.0970	535	1914	2	chr1D.!!$F3	1379
3	TraesCS1A01G326100	chr1D	419986851	419987366	515	False	601.0	601	87.9080	1	512	1	chr1D.!!$F1	511
4	TraesCS1A01G326100	chr6A	498010656	498011469	813	True	1393.0	1393	97.2360	1915	2746	1	chr6A.!!$R1	831
5	TraesCS1A01G326100	chr2B	162519854	162520782	928	True	645.0	966	97.6360	1915	2746	2	chr2B.!!$R1	831
6	TraesCS1A01G326100	chr3A	707351730	707352405	675	False	402.5	479	89.3935	1911	2746	2	chr3A.!!$F2	835
7	TraesCS1A01G326100	chr7B	748665458	748666130	672	True	405.0	477	89.8415	1915	2746	2	chr7B.!!$R1	831
8	TraesCS1A01G326100	chrUn	27336752	27337427	675	True	411.5	473	90.4215	1915	2746	2	chrUn.!!$R1	831
9	TraesCS1A01G326100	chr5D	385981357	385982070	713	True	385.5	425	89.4985	1915	2746	2	chr5D.!!$R2	831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
719	729	0.389426	GGAGTGAACGCCGTGTATGT	60.389	55.0	0.0	0.0	0.0	2.29	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1765	1870	0.618968	GGGCAGGAGGAAGAGGAAGA	60.619	60.0	0.0	0.0	0.0	2.87	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	7.291566	ACTCACTAGATGGCTGTATAGTAGTT	58.708	38.462	0.00	0.00	0.00	2.24
53	54	3.039011	AGTAGTTCTGAACAGTGGTGGT	58.961	45.455	21.50	2.02	0.00	4.16
122	123	3.684305	TGCTGTGACGAGTATCCATTTTG	59.316	43.478	0.00	0.00	0.00	2.44
139	140	5.762218	CCATTTTGTTATTGTGGCAGGAAAA	59.238	36.000	0.00	0.00	0.00	2.29
215	216	4.143094	GCTCTTTGATAGGTGTTGAACGAC	60.143	45.833	0.00	0.00	0.00	4.34
236	237	8.320396	ACGACGTGATCTGTATTACTGTATAT	57.680	34.615	0.00	0.00	0.00	0.86
239	240	9.331106	GACGTGATCTGTATTACTGTATATGTG	57.669	37.037	0.00	0.00	0.00	3.21
253	255	8.621532	ACTGTATATGTGTTGATTTGAGTGTT	57.378	30.769	0.00	0.00	0.00	3.32
256	258	9.891828	TGTATATGTGTTGATTTGAGTGTTTTC	57.108	29.630	0.00	0.00	0.00	2.29
265	267	8.490355	GTTGATTTGAGTGTTTTCATCATTTCC	58.510	33.333	0.00	0.00	0.00	3.13
269	271	6.713762	TGAGTGTTTTCATCATTTCCAAGT	57.286	33.333	0.00	0.00	0.00	3.16
271	273	7.555087	TGAGTGTTTTCATCATTTCCAAGTTT	58.445	30.769	0.00	0.00	0.00	2.66
298	308	3.869246	CGTGACACCAAGTTCTAACAGTT	59.131	43.478	0.00	0.00	0.00	3.16
324	334	6.089016	CACTGCTAATGCTGTTTTGATTTGAG	59.911	38.462	0.00	0.00	46.76	3.02
334	344	6.591062	GCTGTTTTGATTTGAGCCATCAATTA	59.409	34.615	0.00	0.00	44.75	1.40
355	365	8.905702	CAATTATATTGCTTTATTGGTTCGAGC	58.094	33.333	0.00	0.00	0.00	5.03
365	375	0.884704	TGGTTCGAGCTCAAGCAACC	60.885	55.000	20.79	20.29	45.16	3.77
376	386	1.806542	TCAAGCAACCGAAGCTCATTC	59.193	47.619	0.00	0.00	42.53	2.67
446	456	1.302033	CCAGCGCCTGTGAAGACTT	60.302	57.895	2.29	0.00	0.00	3.01
512	522	5.743636	AATTGCAGTGTACAATGGGAAAT	57.256	34.783	23.42	3.43	37.78	2.17
513	523	6.849085	AATTGCAGTGTACAATGGGAAATA	57.151	33.333	23.42	0.00	37.78	1.40
514	524	7.422465	AATTGCAGTGTACAATGGGAAATAT	57.578	32.000	23.42	2.70	37.78	1.28
521	531	6.882140	AGTGTACAATGGGAAATATTTCGTCA	59.118	34.615	19.41	19.00	38.06	4.35
719	729	0.389426	GGAGTGAACGCCGTGTATGT	60.389	55.000	0.00	0.00	0.00	2.29
732	778	2.798283	CGTGTATGTCCGTTTTGTCTGT	59.202	45.455	0.00	0.00	0.00	3.41
733	779	3.362596	CGTGTATGTCCGTTTTGTCTGTG	60.363	47.826	0.00	0.00	0.00	3.66
799	845	8.062536	AGGTGGAACTTCTAGTATGTCTATCTT	58.937	37.037	0.00	0.00	36.74	2.40
812	879	5.843673	TGTCTATCTTTCTAGTGGAGCTG	57.156	43.478	0.00	0.00	0.00	4.24
847	921	7.466746	TGTATGGAAAATTGGGAGAAGAAAG	57.533	36.000	0.00	0.00	0.00	2.62
848	922	4.871933	TGGAAAATTGGGAGAAGAAAGC	57.128	40.909	0.00	0.00	0.00	3.51
882	956	4.278310	TCTATCTGTGTGGCTGTAGCTAA	58.722	43.478	0.00	0.00	41.70	3.09
901	975	1.620822	ATGCCCACTTGGTTTGTCTC	58.379	50.000	0.00	0.00	36.04	3.36
982	1056	5.431765	ACCTTCTGATACTTATGGCACTTG	58.568	41.667	0.00	0.00	0.00	3.16
994	1068	4.789012	ATGGCACTTGTAGATGGTTTTG	57.211	40.909	0.00	0.00	0.00	2.44
1013	1102	5.471556	TTTGCTTTGATGATGTGTTGGAT	57.528	34.783	0.00	0.00	0.00	3.41
1017	1106	4.157289	GCTTTGATGATGTGTTGGATCTGT	59.843	41.667	0.00	0.00	0.00	3.41
1041	1130	2.162681	CCACCATTCCAACCTCAACTC	58.837	52.381	0.00	0.00	0.00	3.01
1055	1144	0.754957	CAACTCTGGTGGGGTTTGCA	60.755	55.000	0.00	0.00	0.00	4.08
1057	1146	0.188342	ACTCTGGTGGGGTTTGCATT	59.812	50.000	0.00	0.00	0.00	3.56
1064	1153	1.139853	GTGGGGTTTGCATTGTTGGAA	59.860	47.619	0.00	0.00	0.00	3.53
1066	1155	2.224475	TGGGGTTTGCATTGTTGGAATG	60.224	45.455	0.00	0.00	32.82	2.67
1068	1157	3.066380	GGGTTTGCATTGTTGGAATGTC	58.934	45.455	0.00	0.00	32.82	3.06
1083	1172	0.586319	ATGTCGTTTCACCGTGCAAG	59.414	50.000	0.00	0.00	0.00	4.01
1108	1197	4.634199	TCTGGTTACTTTTCCGTTAGGTG	58.366	43.478	0.00	0.00	39.05	4.00
1133	1223	0.318120	GGTGTCCAGTTGGCAAATGG	59.682	55.000	34.40	34.40	35.30	3.16
1169	1259	1.749634	GGATAGGACATATACGGCGCT	59.250	52.381	6.90	0.00	0.00	5.92
1170	1260	2.479730	GGATAGGACATATACGGCGCTG	60.480	54.545	16.39	16.39	0.00	5.18
1196	1286	2.108952	ACCCAGAGAATTTGCTCACCTT	59.891	45.455	0.00	0.00	37.37	3.50
1202	1292	4.759183	AGAGAATTTGCTCACCTTCACTTC	59.241	41.667	0.00	0.00	37.37	3.01
1235	1325	1.008329	GCTCTCACTTGCTGCATCTC	58.992	55.000	1.84	0.00	0.00	2.75
1348	1439	3.256631	GCAACCTTGTCAATTGTCATCCT	59.743	43.478	6.21	0.00	0.00	3.24
1462	1561	2.047844	TGAGAAGCTGAGGTGCGC	60.048	61.111	0.00	0.00	38.13	6.09
1486	1585	2.592993	CCAAGGACGGCAAGGAGGA	61.593	63.158	0.00	0.00	0.00	3.71
1487	1586	1.078848	CAAGGACGGCAAGGAGGAG	60.079	63.158	0.00	0.00	0.00	3.69
1488	1587	2.294078	AAGGACGGCAAGGAGGAGG	61.294	63.158	0.00	0.00	0.00	4.30
1517	1616	3.562779	GACTCCGGCGGTCGTGAAA	62.563	63.158	27.32	2.99	37.11	2.69
1750	1855	1.334384	GGCCTCTCCCTCTGAAGTCC	61.334	65.000	0.00	0.00	0.00	3.85
1751	1856	1.334384	GCCTCTCCCTCTGAAGTCCC	61.334	65.000	0.00	0.00	0.00	4.46
1752	1857	1.040339	CCTCTCCCTCTGAAGTCCCG	61.040	65.000	0.00	0.00	0.00	5.14
1767	1872	4.033776	CCGCCACCACCACCATCT	62.034	66.667	0.00	0.00	0.00	2.90
1770	1875	1.678970	GCCACCACCACCATCTTCC	60.679	63.158	0.00	0.00	0.00	3.46
1784	1889	0.618968	TCTTCCTCTTCCTCCTGCCC	60.619	60.000	0.00	0.00	0.00	5.36
1788	1894	4.722535	TCTTCCTCCTGCCCGCCT	62.723	66.667	0.00	0.00	0.00	5.52
1868	1975	7.627939	GCTGAGTTACTGATTACGTAGGAGAAA	60.628	40.741	0.00	0.00	0.00	2.52
1907	2016	3.440872	TCAGTGTTAAACCGTTGCAGTTT	59.559	39.130	7.59	7.59	40.43	2.66
2395	2669	8.087303	ACTCCCTCCGTTTCTAAATATAAGTT	57.913	34.615	0.00	0.00	0.00	2.66

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
14	15	7.663905	AGAACTACTATACAGCCATCTAGTGAG	59.336	40.741	0.00	0.00	0.00	3.51
38	39	2.958818	AGACTACCACCACTGTTCAGA	58.041	47.619	6.83	0.00	0.00	3.27
53	54	7.344612	TCCCAGTAGAAGATGCAAAATAGACTA	59.655	37.037	0.00	0.00	0.00	2.59
181	182	7.071196	ACACCTATCAAAGAGCATATACTTGGA	59.929	37.037	0.00	0.00	31.81	3.53
184	185	8.486210	TCAACACCTATCAAAGAGCATATACTT	58.514	33.333	0.00	0.00	0.00	2.24
193	194	4.090066	CGTCGTTCAACACCTATCAAAGAG	59.910	45.833	0.00	0.00	0.00	2.85
194	195	3.985279	CGTCGTTCAACACCTATCAAAGA	59.015	43.478	0.00	0.00	0.00	2.52
196	197	3.491639	CACGTCGTTCAACACCTATCAAA	59.508	43.478	0.00	0.00	0.00	2.69
215	216	9.678941	AACACATATACAGTAATACAGATCACG	57.321	33.333	0.00	0.00	0.00	4.35
236	237	6.861144	TGATGAAAACACTCAAATCAACACA	58.139	32.000	0.00	0.00	0.00	3.72
239	240	8.490355	GGAAATGATGAAAACACTCAAATCAAC	58.510	33.333	0.00	0.00	0.00	3.18
243	244	8.206189	ACTTGGAAATGATGAAAACACTCAAAT	58.794	29.630	0.00	0.00	0.00	2.32
271	273	2.088423	AGAACTTGGTGTCACGCAAAA	58.912	42.857	0.00	0.00	0.00	2.44
274	276	2.206750	GTTAGAACTTGGTGTCACGCA	58.793	47.619	0.00	0.00	0.00	5.24
276	278	3.454375	ACTGTTAGAACTTGGTGTCACG	58.546	45.455	0.00	0.00	0.00	4.35
283	293	4.130118	AGCAGTGAACTGTTAGAACTTGG	58.870	43.478	11.87	0.00	45.45	3.61
298	308	5.710513	AATCAAAACAGCATTAGCAGTGA	57.289	34.783	0.00	0.00	45.49	3.41
303	313	4.328169	GGCTCAAATCAAAACAGCATTAGC	59.672	41.667	0.00	0.00	42.56	3.09
324	334	9.492973	AACCAATAAAGCAATATAATTGATGGC	57.507	29.630	3.86	0.00	30.77	4.40
334	344	5.822519	TGAGCTCGAACCAATAAAGCAATAT	59.177	36.000	9.64	0.00	35.42	1.28
355	365	1.446907	ATGAGCTTCGGTTGCTTGAG	58.553	50.000	0.00	0.00	41.30	3.02
365	375	3.373439	CAGAGAAAAGGGAATGAGCTTCG	59.627	47.826	0.00	0.00	34.45	3.79
446	456	2.061028	GATGATCATGTCGCGCACATA	58.939	47.619	14.30	9.36	44.60	2.29
512	522	7.173218	GGGCTTGATCTCATTTATGACGAAATA	59.827	37.037	0.00	0.00	32.50	1.40
513	523	6.016777	GGGCTTGATCTCATTTATGACGAAAT	60.017	38.462	0.00	0.00	32.50	2.17
514	524	5.296780	GGGCTTGATCTCATTTATGACGAAA	59.703	40.000	0.00	0.00	32.50	3.46
521	531	4.963318	TCTCGGGCTTGATCTCATTTAT	57.037	40.909	0.00	0.00	0.00	1.40
550	560	4.681978	AACTCGGCGAGGTGGTGC	62.682	66.667	36.81	0.00	33.35	5.01
554	564	1.949847	ATGGAGAACTCGGCGAGGTG	61.950	60.000	36.81	17.01	33.35	4.00
719	729	0.542333	TCCACCACAGACAAAACGGA	59.458	50.000	0.00	0.00	0.00	4.69
799	845	1.623811	GTTCCCACAGCTCCACTAGAA	59.376	52.381	0.00	0.00	0.00	2.10
809	876	1.392589	CATACATGGGTTCCCACAGC	58.607	55.000	13.19	0.00	39.13	4.40
839	906	5.743117	AGATAACAGATGCTGCTTTCTTCT	58.257	37.500	0.00	1.00	34.37	2.85
847	921	5.177142	CACACAGATAGATAACAGATGCTGC	59.823	44.000	0.00	0.00	34.37	5.25
848	922	5.695363	CCACACAGATAGATAACAGATGCTG	59.305	44.000	0.00	0.00	37.52	4.41
882	956	1.145738	AGAGACAAACCAAGTGGGCAT	59.854	47.619	1.69	0.00	42.05	4.40
901	975	1.134461	CAGGAACCAGAGGATGCAGAG	60.134	57.143	0.00	0.00	0.00	3.35
982	1056	6.529125	CACATCATCAAAGCAAAACCATCTAC	59.471	38.462	0.00	0.00	0.00	2.59
994	1068	4.157289	ACAGATCCAACACATCATCAAAGC	59.843	41.667	0.00	0.00	0.00	3.51
1013	1102	1.773856	TTGGAATGGTGGGCGACAGA	61.774	55.000	1.14	0.00	0.00	3.41
1017	1106	2.034999	GGTTGGAATGGTGGGCGA	59.965	61.111	0.00	0.00	0.00	5.54
1041	1130	0.758123	AACAATGCAAACCCCACCAG	59.242	50.000	0.00	0.00	0.00	4.00
1055	1144	3.304391	CGGTGAAACGACATTCCAACAAT	60.304	43.478	0.00	0.00	38.12	2.71
1057	1146	1.600013	CGGTGAAACGACATTCCAACA	59.400	47.619	0.00	0.00	38.12	3.33
1064	1153	0.586319	CTTGCACGGTGAAACGACAT	59.414	50.000	13.29	0.00	38.12	3.06
1066	1155	1.368850	GCTTGCACGGTGAAACGAC	60.369	57.895	13.29	0.00	38.12	4.34
1068	1157	2.051345	GGCTTGCACGGTGAAACG	60.051	61.111	13.29	3.32	38.12	3.60
1083	1172	2.180432	ACGGAAAAGTAACCAGAGGC	57.820	50.000	0.00	0.00	0.00	4.70
1108	1197	1.898574	CCAACTGGACACCACAGGC	60.899	63.158	0.00	0.00	40.23	4.85
1133	1223	2.149973	ATCCTCTTGGGTCCAATTGC	57.850	50.000	0.00	0.00	35.20	3.56
1170	1260	3.117888	TGAGCAAATTCTCTGGGTATCCC	60.118	47.826	0.00	0.00	45.71	3.85
1247	1338	0.618458	TGCCATTGTAGACCTGACCC	59.382	55.000	0.00	0.00	0.00	4.46
1311	1402	1.134371	GGTTGCCTACCTAGAGCTTGG	60.134	57.143	0.00	0.00	44.10	3.61
1348	1439	6.709018	TCATATGGTCGACATTCTTACAGA	57.291	37.500	18.91	1.52	41.03	3.41
1462	1561	0.108138	CTTGCCGTCCTTGGAGTAGG	60.108	60.000	0.00	0.00	36.59	3.18
1501	1600	2.809601	CTTTCACGACCGCCGGAG	60.810	66.667	11.71	0.00	43.93	4.63
1750	1855	3.567579	AAGATGGTGGTGGTGGCGG	62.568	63.158	0.00	0.00	0.00	6.13
1751	1856	2.034066	AAGATGGTGGTGGTGGCG	59.966	61.111	0.00	0.00	0.00	5.69
1752	1857	1.678970	GGAAGATGGTGGTGGTGGC	60.679	63.158	0.00	0.00	0.00	5.01
1765	1870	0.618968	GGGCAGGAGGAAGAGGAAGA	60.619	60.000	0.00	0.00	0.00	2.87
1767	1872	1.990060	CGGGCAGGAGGAAGAGGAA	60.990	63.158	0.00	0.00	0.00	3.36
1770	1875	4.168291	GGCGGGCAGGAGGAAGAG	62.168	72.222	0.00	0.00	0.00	2.85
1784	1889	0.677731	TTTCAAGGATGAGGCAGGCG	60.678	55.000	0.00	0.00	36.78	5.52
1788	1894	2.559668	CAAAGCTTTCAAGGATGAGGCA	59.440	45.455	9.23	0.00	38.06	4.75
1868	1975	5.982356	ACACTGACATACTGCATCTTACAT	58.018	37.500	0.00	0.00	0.00	2.29
1907	2016	7.500892	ACATGTGGTGTAATTGACTCAGTTAAA	59.499	33.333	0.00	0.00	39.91	1.52
2513	2787	4.055710	TGTTAGACATGTACTCCCTCCA	57.944	45.455	0.00	0.00	0.00	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.