Multiple sequence alignment - TraesCS1A01G325100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G325100 chr1A 100.000 2537 0 0 1 2537 516042316 516039780 0.000000e+00 4686.0
1 TraesCS1A01G325100 chr1A 91.045 134 9 3 525 657 294516496 294516627 7.210000e-41 178.0
2 TraesCS1A01G325100 chr1D 89.648 1391 102 20 1080 2459 418661721 418660362 0.000000e+00 1733.0
3 TraesCS1A01G325100 chr1D 92.432 370 25 2 715 1084 418667656 418667290 2.240000e-145 525.0
4 TraesCS1A01G325100 chr1D 77.885 312 34 23 846 1147 418880329 418880043 7.260000e-36 161.0
5 TraesCS1A01G325100 chr1D 73.123 506 69 42 679 1147 418670710 418670235 4.430000e-23 119.0
6 TraesCS1A01G325100 chr1D 81.690 142 14 5 669 798 418756327 418756186 9.600000e-20 108.0
7 TraesCS1A01G325100 chr1D 96.774 62 2 0 737 798 419296821 419296760 1.240000e-18 104.0
8 TraesCS1A01G325100 chr1D 80.000 115 12 4 679 782 419172878 419172764 9.730000e-10 75.0
9 TraesCS1A01G325100 chr1B 93.042 1121 55 13 658 1762 566184565 566183452 0.000000e+00 1616.0
10 TraesCS1A01G325100 chr1B 87.467 758 66 14 1759 2508 566181827 566181091 0.000000e+00 846.0
11 TraesCS1A01G325100 chr1B 92.237 541 40 2 12 552 566185100 566184562 0.000000e+00 765.0
12 TraesCS1A01G325100 chr1B 79.600 250 25 17 846 1091 566251300 566251073 3.380000e-34 156.0
13 TraesCS1A01G325100 chr1B 93.750 48 3 0 1349 1396 566388656 566388609 3.500000e-09 73.1
14 TraesCS1A01G325100 chr2A 89.950 199 11 6 2340 2537 756926549 756926739 5.420000e-62 248.0
15 TraesCS1A01G325100 chr2A 92.913 127 6 3 540 665 16796703 16796579 5.580000e-42 182.0
16 TraesCS1A01G325100 chr3D 97.273 110 3 0 547 656 26258807 26258698 1.200000e-43 187.0
17 TraesCS1A01G325100 chr5A 95.652 115 5 0 543 657 362173350 362173236 4.310000e-43 185.0
18 TraesCS1A01G325100 chr7A 93.496 123 8 0 534 656 27059444 27059566 1.550000e-42 183.0
19 TraesCS1A01G325100 chr4A 94.915 118 5 1 543 660 625546199 625546315 1.550000e-42 183.0
20 TraesCS1A01G325100 chr4A 94.872 117 5 1 545 661 593739019 593739134 5.580000e-42 182.0
21 TraesCS1A01G325100 chr4A 93.443 122 7 1 536 656 416231516 416231395 2.010000e-41 180.0
22 TraesCS1A01G325100 chr5B 92.126 127 9 1 530 656 502097178 502097303 7.210000e-41 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G325100 chr1A 516039780 516042316 2536 True 4686.000000 4686 100.000000 1 2537 1 chr1A.!!$R1 2536
1 TraesCS1A01G325100 chr1D 418660362 418661721 1359 True 1733.000000 1733 89.648000 1080 2459 1 chr1D.!!$R1 1379
2 TraesCS1A01G325100 chr1D 418667290 418670710 3420 True 322.000000 525 82.777500 679 1147 2 chr1D.!!$R6 468
3 TraesCS1A01G325100 chr1B 566181091 566185100 4009 True 1075.666667 1616 90.915333 12 2508 3 chr1B.!!$R3 2496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 644 0.458889 CCCGCGACAAGTAATTCGGA 60.459 55.0 8.23 0.0 39.23 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 6740 0.668535 GTTGAAGGTGAGGCAACCAC 59.331 55.0 11.43 4.45 43.2 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.664082 TTTGTAATAACACATGCAATTTGGG 57.336 32.000 0.00 0.00 34.61 4.12
63 64 3.801594 ACAACCAAAAGCATAAACAAGCG 59.198 39.130 0.00 0.00 35.48 4.68
83 84 7.444183 ACAAGCGCACATAAGTGGTTATATATT 59.556 33.333 11.47 0.00 45.98 1.28
152 153 6.389830 TTTTCTGTCAAAATTGCTAGCAGA 57.610 33.333 18.45 8.55 0.00 4.26
156 157 3.119388 TGTCAAAATTGCTAGCAGATGCC 60.119 43.478 18.45 6.39 43.38 4.40
197 198 3.256631 GCCATGACCTGAAGATGTTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
199 200 4.763793 CCATGACCTGAAGATGTTTGTTCT 59.236 41.667 0.00 0.00 0.00 3.01
200 201 5.335426 CCATGACCTGAAGATGTTTGTTCTG 60.335 44.000 0.00 0.00 0.00 3.02
201 202 3.565482 TGACCTGAAGATGTTTGTTCTGC 59.435 43.478 0.00 0.00 0.00 4.26
209 210 2.638480 TGTTTGTTCTGCAGTAGCCT 57.362 45.000 14.67 0.00 41.13 4.58
216 217 1.352083 TCTGCAGTAGCCTCCTTGTT 58.648 50.000 14.67 0.00 41.13 2.83
250 251 4.287766 AGTGCTTCGGAAAGATTTACCT 57.712 40.909 0.00 0.00 34.14 3.08
255 256 5.411669 TGCTTCGGAAAGATTTACCTTTCTC 59.588 40.000 13.81 5.88 46.78 2.87
257 258 6.183360 GCTTCGGAAAGATTTACCTTTCTCTC 60.183 42.308 13.81 0.70 46.78 3.20
259 260 7.005709 TCGGAAAGATTTACCTTTCTCTCTT 57.994 36.000 13.81 0.00 46.78 2.85
262 263 8.231161 CGGAAAGATTTACCTTTCTCTCTTTTC 58.769 37.037 13.81 0.00 46.78 2.29
284 285 6.046290 TCTGAATGTCTCACATGATGTCTT 57.954 37.500 0.00 0.00 37.97 3.01
290 291 3.055530 GTCTCACATGATGTCTTCAGGGT 60.056 47.826 0.00 0.00 40.46 4.34
291 292 3.055602 TCTCACATGATGTCTTCAGGGTG 60.056 47.826 0.00 13.12 40.46 4.61
318 319 9.726438 AGTACATAAAAATCAGCTCTTGTTACT 57.274 29.630 0.00 0.00 0.00 2.24
378 379 2.071778 TCTTCCAAAACAAGGCAGCT 57.928 45.000 0.00 0.00 0.00 4.24
405 406 2.596419 GACTCAAAGACAATCTCGAGCG 59.404 50.000 7.81 0.85 0.00 5.03
411 412 3.510388 AGACAATCTCGAGCGATTCAA 57.490 42.857 7.81 0.00 31.52 2.69
419 420 3.993736 TCTCGAGCGATTCAATTTTGTCA 59.006 39.130 7.81 0.00 0.00 3.58
427 428 5.149273 CGATTCAATTTTGTCACTCCACTG 58.851 41.667 0.00 0.00 0.00 3.66
428 429 5.049474 CGATTCAATTTTGTCACTCCACTGA 60.049 40.000 0.00 0.00 0.00 3.41
461 462 0.535335 GTGCCGGGTCAAGATGAGTA 59.465 55.000 2.18 0.00 0.00 2.59
552 553 7.948447 TGGTGCAATGTATACCTAGATAGTACT 59.052 37.037 0.00 0.00 35.51 2.73
553 554 8.460428 GGTGCAATGTATACCTAGATAGTACTC 58.540 40.741 0.00 0.00 0.00 2.59
554 555 8.460428 GTGCAATGTATACCTAGATAGTACTCC 58.540 40.741 0.00 0.00 0.00 3.85
555 556 7.614583 TGCAATGTATACCTAGATAGTACTCCC 59.385 40.741 0.00 0.00 0.00 4.30
556 557 7.835181 GCAATGTATACCTAGATAGTACTCCCT 59.165 40.741 0.00 0.00 0.00 4.20
557 558 9.398538 CAATGTATACCTAGATAGTACTCCCTC 57.601 40.741 0.00 0.00 0.00 4.30
558 559 7.507797 TGTATACCTAGATAGTACTCCCTCC 57.492 44.000 0.00 0.00 0.00 4.30
559 560 5.697082 ATACCTAGATAGTACTCCCTCCG 57.303 47.826 0.00 0.00 0.00 4.63
560 561 3.325605 ACCTAGATAGTACTCCCTCCGT 58.674 50.000 0.00 0.00 0.00 4.69
561 562 3.721050 ACCTAGATAGTACTCCCTCCGTT 59.279 47.826 0.00 0.00 0.00 4.44
562 563 4.202451 ACCTAGATAGTACTCCCTCCGTTC 60.202 50.000 0.00 0.00 0.00 3.95
563 564 3.226682 AGATAGTACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
564 565 2.512896 AGATAGTACTCCCTCCGTTCCA 59.487 50.000 0.00 0.00 0.00 3.53
565 566 2.905415 TAGTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
566 567 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
567 568 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
568 569 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
569 570 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
570 571 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
571 572 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
572 573 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
573 574 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
574 575 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
575 576 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
576 577 3.581755 CTCCGTTCCAAATTACTCGTCA 58.418 45.455 0.00 0.00 0.00 4.35
577 578 3.319755 TCCGTTCCAAATTACTCGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
578 579 3.061322 CCGTTCCAAATTACTCGTCACA 58.939 45.455 0.00 0.00 0.00 3.58
579 580 3.122948 CCGTTCCAAATTACTCGTCACAG 59.877 47.826 0.00 0.00 0.00 3.66
580 581 3.985279 CGTTCCAAATTACTCGTCACAGA 59.015 43.478 0.00 0.00 0.00 3.41
581 582 4.446385 CGTTCCAAATTACTCGTCACAGAA 59.554 41.667 0.00 0.00 0.00 3.02
582 583 5.050634 CGTTCCAAATTACTCGTCACAGAAA 60.051 40.000 0.00 0.00 0.00 2.52
583 584 6.347402 CGTTCCAAATTACTCGTCACAGAAAT 60.347 38.462 0.00 0.00 0.00 2.17
584 585 6.480524 TCCAAATTACTCGTCACAGAAATG 57.519 37.500 0.00 0.00 0.00 2.32
585 586 5.411361 TCCAAATTACTCGTCACAGAAATGG 59.589 40.000 0.00 0.00 0.00 3.16
586 587 5.411361 CCAAATTACTCGTCACAGAAATGGA 59.589 40.000 0.00 0.00 0.00 3.41
587 588 6.094048 CCAAATTACTCGTCACAGAAATGGAT 59.906 38.462 0.00 0.00 0.00 3.41
588 589 6.668541 AATTACTCGTCACAGAAATGGATG 57.331 37.500 0.00 0.00 0.00 3.51
589 590 3.685139 ACTCGTCACAGAAATGGATGT 57.315 42.857 0.00 0.00 0.00 3.06
590 591 4.801330 ACTCGTCACAGAAATGGATGTA 57.199 40.909 0.00 0.00 0.00 2.29
591 592 5.344743 ACTCGTCACAGAAATGGATGTAT 57.655 39.130 0.00 0.00 0.00 2.29
592 593 5.352284 ACTCGTCACAGAAATGGATGTATC 58.648 41.667 0.00 0.00 0.00 2.24
593 594 5.127845 ACTCGTCACAGAAATGGATGTATCT 59.872 40.000 0.00 0.00 0.00 1.98
594 595 6.321435 ACTCGTCACAGAAATGGATGTATCTA 59.679 38.462 0.00 0.00 0.00 1.98
595 596 6.739112 TCGTCACAGAAATGGATGTATCTAG 58.261 40.000 0.00 0.00 0.00 2.43
596 597 6.546034 TCGTCACAGAAATGGATGTATCTAGA 59.454 38.462 0.00 0.00 0.00 2.43
597 598 7.068226 TCGTCACAGAAATGGATGTATCTAGAA 59.932 37.037 0.00 0.00 0.00 2.10
598 599 7.168302 CGTCACAGAAATGGATGTATCTAGAAC 59.832 40.741 0.00 0.00 0.00 3.01
599 600 8.200792 GTCACAGAAATGGATGTATCTAGAACT 58.799 37.037 0.00 0.00 0.00 3.01
600 601 9.421399 TCACAGAAATGGATGTATCTAGAACTA 57.579 33.333 0.00 0.00 0.00 2.24
628 629 5.978814 ACATCTAGATAAATCCATACCCGC 58.021 41.667 4.54 0.00 0.00 6.13
629 630 4.713824 TCTAGATAAATCCATACCCGCG 57.286 45.455 0.00 0.00 0.00 6.46
630 631 4.338012 TCTAGATAAATCCATACCCGCGA 58.662 43.478 8.23 0.00 0.00 5.87
631 632 3.314541 AGATAAATCCATACCCGCGAC 57.685 47.619 8.23 0.00 0.00 5.19
632 633 2.631062 AGATAAATCCATACCCGCGACA 59.369 45.455 8.23 0.00 0.00 4.35
633 634 2.983907 TAAATCCATACCCGCGACAA 57.016 45.000 8.23 0.00 0.00 3.18
634 635 1.663695 AAATCCATACCCGCGACAAG 58.336 50.000 8.23 0.00 0.00 3.16
635 636 0.539986 AATCCATACCCGCGACAAGT 59.460 50.000 8.23 1.45 0.00 3.16
636 637 1.405872 ATCCATACCCGCGACAAGTA 58.594 50.000 8.23 4.04 0.00 2.24
637 638 1.184431 TCCATACCCGCGACAAGTAA 58.816 50.000 8.23 0.00 0.00 2.24
638 639 1.758280 TCCATACCCGCGACAAGTAAT 59.242 47.619 8.23 0.00 0.00 1.89
639 640 2.168936 TCCATACCCGCGACAAGTAATT 59.831 45.455 8.23 0.00 0.00 1.40
640 641 2.542595 CCATACCCGCGACAAGTAATTC 59.457 50.000 8.23 0.00 0.00 2.17
641 642 1.912001 TACCCGCGACAAGTAATTCG 58.088 50.000 8.23 0.00 38.31 3.34
642 643 0.738412 ACCCGCGACAAGTAATTCGG 60.738 55.000 8.23 0.00 35.73 4.30
643 644 0.458889 CCCGCGACAAGTAATTCGGA 60.459 55.000 8.23 0.00 39.23 4.55
644 645 1.352114 CCGCGACAAGTAATTCGGAA 58.648 50.000 8.23 0.00 39.23 4.30
645 646 1.060122 CCGCGACAAGTAATTCGGAAC 59.940 52.381 8.23 0.00 39.23 3.62
708 709 5.300286 CCACTGAGATTATCCAACCCAAATC 59.700 44.000 0.00 0.00 0.00 2.17
896 3915 7.626999 TCTTGGGTGCCTGTATATAAATAGT 57.373 36.000 0.00 0.00 0.00 2.12
897 3916 8.730093 TCTTGGGTGCCTGTATATAAATAGTA 57.270 34.615 0.00 0.00 0.00 1.82
898 3917 8.591072 TCTTGGGTGCCTGTATATAAATAGTAC 58.409 37.037 0.00 0.00 0.00 2.73
952 3971 1.489481 AATCTCATCCTGCGTCTCCA 58.511 50.000 0.00 0.00 0.00 3.86
954 3973 1.035923 TCTCATCCTGCGTCTCCATC 58.964 55.000 0.00 0.00 0.00 3.51
958 3977 1.459455 ATCCTGCGTCTCCATCCTCG 61.459 60.000 0.00 0.00 0.00 4.63
983 4002 4.080919 TCTCTCTTAGCCTTGCATTGCTTA 60.081 41.667 14.76 6.22 39.00 3.09
1042 4061 4.020617 CTCTCAAGGTGGCCGCCA 62.021 66.667 36.17 15.94 0.00 5.69
1069 4088 0.894835 TGTTCTCGCCATGCTAGTCA 59.105 50.000 0.00 0.00 0.00 3.41
1125 4159 1.150536 GCCACCAACTCCAACTCCA 59.849 57.895 0.00 0.00 0.00 3.86
1127 4161 1.318576 CCACCAACTCCAACTCCAAC 58.681 55.000 0.00 0.00 0.00 3.77
1128 4162 1.409521 CCACCAACTCCAACTCCAACA 60.410 52.381 0.00 0.00 0.00 3.33
1129 4163 1.676006 CACCAACTCCAACTCCAACAC 59.324 52.381 0.00 0.00 0.00 3.32
1190 4224 3.982241 GGTGCTGCTGCCACCAAC 61.982 66.667 22.82 11.66 38.95 3.77
1288 4328 0.025001 CGTTACCTCGAAATGCAGCG 59.975 55.000 0.00 0.00 0.00 5.18
1431 4471 1.448365 CATCAGCGCCTGCACTACA 60.448 57.895 2.29 0.00 46.23 2.74
1437 4477 0.597637 GCGCCTGCACTACACGATAT 60.598 55.000 0.00 0.00 42.15 1.63
1539 4579 2.687935 CTGGAGTCCTCAGAACTAGCTC 59.312 54.545 11.33 0.00 34.36 4.09
1572 4612 6.644347 ACTCTAGCTAGTATGTGTTGCATTT 58.356 36.000 20.10 0.00 38.94 2.32
1574 4614 7.607991 ACTCTAGCTAGTATGTGTTGCATTTTT 59.392 33.333 20.10 0.00 38.94 1.94
1593 4633 1.013596 TTGGTCAAACGTGTCTGCTG 58.986 50.000 0.00 0.00 0.00 4.41
1688 4731 1.153147 GTCCTTGGGCCCGATCTTC 60.153 63.158 19.37 1.81 0.00 2.87
1713 4756 5.104374 CACAATGGTTTGATGCTACAATCC 58.896 41.667 12.96 12.96 39.01 3.01
1714 4757 5.018809 ACAATGGTTTGATGCTACAATCCT 58.981 37.500 17.49 7.07 39.19 3.24
1735 4778 1.339610 CGAAATGTGCTTTGGGTCCAA 59.660 47.619 0.00 0.00 0.00 3.53
1739 4782 1.337118 TGTGCTTTGGGTCCAAATCC 58.663 50.000 14.67 9.96 43.78 3.01
1740 4783 1.337118 GTGCTTTGGGTCCAAATCCA 58.663 50.000 14.67 12.05 43.78 3.41
1751 4794 3.489738 GGTCCAAATCCATGAAGCAATCG 60.490 47.826 0.00 0.00 0.00 3.34
1825 6503 7.009550 TGTCCATAGCATCTCTCTTCTCTATT 58.990 38.462 0.00 0.00 0.00 1.73
1834 6512 9.900710 GCATCTCTCTTCTCTATTACGAAAATA 57.099 33.333 0.00 0.00 0.00 1.40
1862 6540 7.356089 TCTACGACACATATCCCTTGTAATT 57.644 36.000 0.00 0.00 0.00 1.40
1902 6580 5.085390 GCACTTTTGTTTTTGCATTCGTTT 58.915 33.333 0.00 0.00 34.97 3.60
1924 6602 4.635473 TCATGATCTTACTTTCTCCCCCT 58.365 43.478 0.00 0.00 0.00 4.79
1925 6603 4.656112 TCATGATCTTACTTTCTCCCCCTC 59.344 45.833 0.00 0.00 0.00 4.30
1936 6614 0.544357 CTCCCCCTCGCCCATATACA 60.544 60.000 0.00 0.00 0.00 2.29
1938 6616 0.768622 CCCCCTCGCCCATATACAAA 59.231 55.000 0.00 0.00 0.00 2.83
1939 6617 1.544759 CCCCCTCGCCCATATACAAAC 60.545 57.143 0.00 0.00 0.00 2.93
1968 6646 4.277672 TCACTCTGACTAAGCGTGTAAAGT 59.722 41.667 0.00 0.00 41.50 2.66
1972 6650 5.161358 TCTGACTAAGCGTGTAAAGTCATG 58.839 41.667 4.64 0.00 45.26 3.07
1973 6651 3.678072 TGACTAAGCGTGTAAAGTCATGC 59.322 43.478 0.10 3.13 42.46 4.06
1982 6660 4.475944 GTGTAAAGTCATGCGATTTTGCT 58.524 39.130 0.00 0.00 35.44 3.91
1988 6666 1.401552 TCATGCGATTTTGCTAGTGGC 59.598 47.619 0.00 0.00 42.22 5.01
1989 6667 1.402968 CATGCGATTTTGCTAGTGGCT 59.597 47.619 0.00 0.00 42.39 4.75
1996 6674 3.947910 TTTTGCTAGTGGCTAGTACGT 57.052 42.857 0.00 0.00 42.39 3.57
1999 6677 3.272574 TGCTAGTGGCTAGTACGTACT 57.727 47.619 29.62 29.62 42.39 2.73
2000 6678 3.201290 TGCTAGTGGCTAGTACGTACTC 58.799 50.000 30.53 17.52 42.39 2.59
2001 6679 3.201290 GCTAGTGGCTAGTACGTACTCA 58.799 50.000 30.53 19.74 36.53 3.41
2002 6680 3.814283 GCTAGTGGCTAGTACGTACTCAT 59.186 47.826 30.53 11.22 36.53 2.90
2003 6681 4.083908 GCTAGTGGCTAGTACGTACTCATC 60.084 50.000 30.53 19.84 36.53 2.92
2004 6682 3.882444 AGTGGCTAGTACGTACTCATCA 58.118 45.455 30.53 21.90 37.73 3.07
2005 6683 4.267536 AGTGGCTAGTACGTACTCATCAA 58.732 43.478 30.53 12.84 37.73 2.57
2018 6696 3.646946 ACTCATCAATCATCATCGACGG 58.353 45.455 0.00 0.00 0.00 4.79
2050 6728 3.282021 GGTACCTGCATGTGATGACATT 58.718 45.455 4.06 0.00 41.12 2.71
2057 6735 7.056006 ACCTGCATGTGATGACATTTTCTATA 58.944 34.615 0.00 0.00 41.12 1.31
2058 6736 7.722728 ACCTGCATGTGATGACATTTTCTATAT 59.277 33.333 0.00 0.00 41.12 0.86
2062 6740 8.235226 GCATGTGATGACATTTTCTATATCAGG 58.765 37.037 0.00 0.00 41.12 3.86
2081 6759 0.668535 GTGGTTGCCTCACCTTCAAC 59.331 55.000 0.00 0.00 37.75 3.18
2107 6785 2.367241 GGTAAAACAAGGCAACATGGGT 59.633 45.455 0.00 0.00 40.32 4.51
2118 6796 3.192633 GGCAACATGGGTTTACTTACCAG 59.807 47.826 0.00 0.00 40.09 4.00
2119 6797 3.192633 GCAACATGGGTTTACTTACCAGG 59.807 47.826 0.00 0.00 41.50 4.45
2122 6800 5.846528 ACATGGGTTTACTTACCAGGTTA 57.153 39.130 0.00 0.00 45.91 2.85
2126 6804 7.731235 ACATGGGTTTACTTACCAGGTTAAATT 59.269 33.333 0.00 0.00 45.91 1.82
2157 6835 1.448922 GATAGGCAGCTCGGACGAGT 61.449 60.000 21.14 7.19 43.70 4.18
2158 6836 1.038130 ATAGGCAGCTCGGACGAGTT 61.038 55.000 21.14 13.87 43.70 3.01
2198 6876 2.359230 GCAAGGAACGGCAGAGCT 60.359 61.111 0.00 0.00 33.90 4.09
2199 6877 1.968540 GCAAGGAACGGCAGAGCTT 60.969 57.895 0.00 0.00 33.90 3.74
2207 6885 0.101399 ACGGCAGAGCTTCTACGATG 59.899 55.000 8.46 0.00 32.64 3.84
2210 6888 1.678627 GGCAGAGCTTCTACGATGAGA 59.321 52.381 0.00 0.00 0.00 3.27
2211 6889 2.099921 GGCAGAGCTTCTACGATGAGAA 59.900 50.000 0.00 0.00 34.30 2.87
2212 6890 3.243704 GGCAGAGCTTCTACGATGAGAAT 60.244 47.826 0.00 0.00 34.95 2.40
2213 6891 3.735240 GCAGAGCTTCTACGATGAGAATG 59.265 47.826 0.00 0.00 34.95 2.67
2214 6892 4.498850 GCAGAGCTTCTACGATGAGAATGA 60.499 45.833 0.00 0.00 34.95 2.57
2215 6893 5.771469 CAGAGCTTCTACGATGAGAATGAT 58.229 41.667 0.00 0.00 34.95 2.45
2216 6894 5.858049 CAGAGCTTCTACGATGAGAATGATC 59.142 44.000 0.00 0.00 34.95 2.92
2217 6895 5.048083 AGAGCTTCTACGATGAGAATGATCC 60.048 44.000 0.00 0.00 34.95 3.36
2218 6896 4.021544 AGCTTCTACGATGAGAATGATCCC 60.022 45.833 0.00 0.00 34.95 3.85
2219 6897 4.262207 GCTTCTACGATGAGAATGATCCCA 60.262 45.833 0.00 0.00 34.95 4.37
2254 6932 2.469826 TCGATTCGATGCATGGTGTAC 58.530 47.619 2.46 0.00 0.00 2.90
2270 6948 0.731417 GTACGACCTGAGCGCTAAGA 59.269 55.000 24.20 0.00 0.00 2.10
2288 6966 3.259930 AAAAACGTCCCGGCATCG 58.740 55.556 0.00 2.39 0.00 3.84
2400 7078 6.829985 TTTTCTCTCCATGGGATCAATCTA 57.170 37.500 13.02 0.00 0.00 1.98
2420 7099 9.829507 CAATCTAAATCTAAGTGAATGGTCTCT 57.170 33.333 0.00 0.00 0.00 3.10
2443 7122 6.881065 TCTTGAAGACCGATGAAATCTTGATT 59.119 34.615 0.00 0.00 42.58 2.57
2459 7138 9.730705 AAATCTTGATTCTCTCTGTGAATGTAA 57.269 29.630 0.00 0.00 34.67 2.41
2463 7142 9.381033 CTTGATTCTCTCTGTGAATGTAATCTT 57.619 33.333 0.00 0.00 34.67 2.40
2514 7193 6.918067 GCTAAAGCCCCTAAAATTCCATAT 57.082 37.500 0.00 0.00 34.31 1.78
2516 7195 8.417273 GCTAAAGCCCCTAAAATTCCATATAA 57.583 34.615 0.00 0.00 34.31 0.98
2517 7196 9.035890 GCTAAAGCCCCTAAAATTCCATATAAT 57.964 33.333 0.00 0.00 34.31 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 5.174395 GTGCCCAAATTGCATGTGTTATTA 58.826 37.500 0.00 0.00 41.46 0.98
39 40 4.552572 GCTTGTTTATGCTTTTGGTTGTGC 60.553 41.667 0.00 0.00 0.00 4.57
125 126 6.697019 TGCTAGCAATTTTGACAGAAAAACTC 59.303 34.615 16.84 0.00 32.12 3.01
152 153 3.756082 TTGGTTCCTCCTTATTGGCAT 57.244 42.857 0.00 0.00 37.07 4.40
156 157 2.618709 GGCGATTGGTTCCTCCTTATTG 59.381 50.000 0.00 0.00 37.07 1.90
197 198 1.002430 CAACAAGGAGGCTACTGCAGA 59.998 52.381 23.35 2.95 41.91 4.26
199 200 0.036732 CCAACAAGGAGGCTACTGCA 59.963 55.000 0.00 0.00 41.22 4.41
200 201 2.859992 CCAACAAGGAGGCTACTGC 58.140 57.895 0.00 0.00 41.22 4.40
209 210 2.112297 GGTCGTGGCCAACAAGGA 59.888 61.111 7.24 0.00 41.22 3.36
216 217 4.980805 GCACTTCGGTCGTGGCCA 62.981 66.667 0.00 0.00 33.10 5.36
244 245 8.980481 ACATTCAGAAAAGAGAGAAAGGTAAA 57.020 30.769 0.00 0.00 0.00 2.01
248 249 6.933521 TGAGACATTCAGAAAAGAGAGAAAGG 59.066 38.462 0.00 0.00 0.00 3.11
250 251 7.275183 TGTGAGACATTCAGAAAAGAGAGAAA 58.725 34.615 0.00 0.00 36.21 2.52
255 256 7.119407 ACATCATGTGAGACATTCAGAAAAGAG 59.881 37.037 0.00 0.00 36.53 2.85
257 258 7.119407 AGACATCATGTGAGACATTCAGAAAAG 59.881 37.037 0.00 0.00 36.53 2.27
259 260 6.470278 AGACATCATGTGAGACATTCAGAAA 58.530 36.000 0.00 0.00 36.53 2.52
262 263 5.873164 TGAAGACATCATGTGAGACATTCAG 59.127 40.000 0.00 0.00 36.53 3.02
284 285 5.880332 GCTGATTTTTATGTACTCACCCTGA 59.120 40.000 0.00 0.00 0.00 3.86
290 291 8.621532 AACAAGAGCTGATTTTTATGTACTCA 57.378 30.769 0.00 0.00 0.00 3.41
291 292 9.974750 GTAACAAGAGCTGATTTTTATGTACTC 57.025 33.333 0.00 0.00 0.00 2.59
378 379 4.067896 GAGATTGTCTTTGAGTCTTGGCA 58.932 43.478 0.00 0.00 0.00 4.92
386 387 2.868662 TCGCTCGAGATTGTCTTTGAG 58.131 47.619 18.75 6.05 34.44 3.02
405 406 6.205464 TCTCAGTGGAGTGACAAAATTGAATC 59.795 38.462 0.00 0.00 42.05 2.52
411 412 4.042062 TGGATCTCAGTGGAGTGACAAAAT 59.958 41.667 0.00 0.00 42.05 1.82
419 420 1.280457 GGGTTGGATCTCAGTGGAGT 58.720 55.000 0.00 0.00 42.05 3.85
427 428 1.177401 GGCACTTTGGGTTGGATCTC 58.823 55.000 0.00 0.00 0.00 2.75
428 429 0.609131 CGGCACTTTGGGTTGGATCT 60.609 55.000 0.00 0.00 0.00 2.75
499 500 1.741770 GTTTGGATCTGCGCCGACT 60.742 57.895 4.18 0.00 0.00 4.18
530 531 7.835181 AGGGAGTACTATCTAGGTATACATTGC 59.165 40.741 5.01 0.00 0.00 3.56
552 553 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
553 554 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
554 555 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
555 556 3.367025 GTGACGAGTAATTTGGAACGGAG 59.633 47.826 0.00 0.00 0.00 4.63
556 557 3.243805 TGTGACGAGTAATTTGGAACGGA 60.244 43.478 0.00 0.00 0.00 4.69
557 558 3.061322 TGTGACGAGTAATTTGGAACGG 58.939 45.455 0.00 0.00 0.00 4.44
558 559 3.985279 TCTGTGACGAGTAATTTGGAACG 59.015 43.478 0.00 0.00 0.00 3.95
559 560 5.917541 TTCTGTGACGAGTAATTTGGAAC 57.082 39.130 0.00 0.00 0.00 3.62
560 561 6.072728 CCATTTCTGTGACGAGTAATTTGGAA 60.073 38.462 0.00 0.00 0.00 3.53
561 562 5.411361 CCATTTCTGTGACGAGTAATTTGGA 59.589 40.000 0.00 0.00 0.00 3.53
562 563 5.411361 TCCATTTCTGTGACGAGTAATTTGG 59.589 40.000 0.00 0.00 0.00 3.28
563 564 6.480524 TCCATTTCTGTGACGAGTAATTTG 57.519 37.500 0.00 0.00 0.00 2.32
564 565 6.655003 ACATCCATTTCTGTGACGAGTAATTT 59.345 34.615 0.00 0.00 0.00 1.82
565 566 6.173339 ACATCCATTTCTGTGACGAGTAATT 58.827 36.000 0.00 0.00 0.00 1.40
566 567 5.734720 ACATCCATTTCTGTGACGAGTAAT 58.265 37.500 0.00 0.00 0.00 1.89
567 568 5.147330 ACATCCATTTCTGTGACGAGTAA 57.853 39.130 0.00 0.00 0.00 2.24
568 569 4.801330 ACATCCATTTCTGTGACGAGTA 57.199 40.909 0.00 0.00 0.00 2.59
569 570 3.685139 ACATCCATTTCTGTGACGAGT 57.315 42.857 0.00 0.00 0.00 4.18
570 571 5.595885 AGATACATCCATTTCTGTGACGAG 58.404 41.667 0.00 0.00 0.00 4.18
571 572 5.598416 AGATACATCCATTTCTGTGACGA 57.402 39.130 0.00 0.00 0.00 4.20
572 573 6.739112 TCTAGATACATCCATTTCTGTGACG 58.261 40.000 0.00 0.00 0.00 4.35
573 574 8.200792 AGTTCTAGATACATCCATTTCTGTGAC 58.799 37.037 0.00 0.00 0.00 3.67
574 575 8.311395 AGTTCTAGATACATCCATTTCTGTGA 57.689 34.615 0.00 0.00 0.00 3.58
602 603 8.204836 GCGGGTATGGATTTATCTAGATGTATT 58.795 37.037 15.79 0.28 0.00 1.89
603 604 7.470147 CGCGGGTATGGATTTATCTAGATGTAT 60.470 40.741 15.79 8.15 0.00 2.29
604 605 6.183360 CGCGGGTATGGATTTATCTAGATGTA 60.183 42.308 15.79 3.39 0.00 2.29
605 606 5.394224 CGCGGGTATGGATTTATCTAGATGT 60.394 44.000 15.79 1.25 0.00 3.06
606 607 5.043903 CGCGGGTATGGATTTATCTAGATG 58.956 45.833 15.79 0.00 0.00 2.90
607 608 4.954202 TCGCGGGTATGGATTTATCTAGAT 59.046 41.667 10.73 10.73 0.00 1.98
608 609 4.157289 GTCGCGGGTATGGATTTATCTAGA 59.843 45.833 6.13 0.00 0.00 2.43
609 610 4.082408 TGTCGCGGGTATGGATTTATCTAG 60.082 45.833 6.13 0.00 0.00 2.43
610 611 3.827876 TGTCGCGGGTATGGATTTATCTA 59.172 43.478 6.13 0.00 0.00 1.98
611 612 2.631062 TGTCGCGGGTATGGATTTATCT 59.369 45.455 6.13 0.00 0.00 1.98
612 613 3.034721 TGTCGCGGGTATGGATTTATC 57.965 47.619 6.13 0.00 0.00 1.75
613 614 3.181458 ACTTGTCGCGGGTATGGATTTAT 60.181 43.478 6.13 0.00 0.00 1.40
614 615 2.168936 ACTTGTCGCGGGTATGGATTTA 59.831 45.455 6.13 0.00 0.00 1.40
615 616 1.065709 ACTTGTCGCGGGTATGGATTT 60.066 47.619 6.13 0.00 0.00 2.17
616 617 0.539986 ACTTGTCGCGGGTATGGATT 59.460 50.000 6.13 0.00 0.00 3.01
617 618 1.405872 TACTTGTCGCGGGTATGGAT 58.594 50.000 6.13 0.00 0.00 3.41
618 619 1.184431 TTACTTGTCGCGGGTATGGA 58.816 50.000 6.13 0.00 0.00 3.41
619 620 2.234300 ATTACTTGTCGCGGGTATGG 57.766 50.000 6.13 0.00 0.00 2.74
620 621 2.217847 CGAATTACTTGTCGCGGGTATG 59.782 50.000 6.13 0.00 0.00 2.39
621 622 2.466846 CGAATTACTTGTCGCGGGTAT 58.533 47.619 6.13 0.00 0.00 2.73
622 623 1.469595 CCGAATTACTTGTCGCGGGTA 60.470 52.381 6.13 2.12 35.93 3.69
623 624 0.738412 CCGAATTACTTGTCGCGGGT 60.738 55.000 6.13 3.16 35.93 5.28
624 625 0.458889 TCCGAATTACTTGTCGCGGG 60.459 55.000 6.13 0.00 39.24 6.13
625 626 1.060122 GTTCCGAATTACTTGTCGCGG 59.940 52.381 6.13 0.00 40.06 6.46
626 627 1.266211 CGTTCCGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 35.93 5.87
627 628 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
628 629 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
629 630 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
630 631 2.564062 TCCTCCGTTCCGAATTACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
631 632 3.241067 TCCTCCGTTCCGAATTACTTG 57.759 47.619 0.00 0.00 0.00 3.16
632 633 3.260128 ACTTCCTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
633 634 2.830321 ACTTCCTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
634 635 3.242549 ACTTCCTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
635 636 3.181497 CGTACTTCCTCCGTTCCGAATTA 60.181 47.826 0.00 0.00 0.00 1.40
636 637 2.416431 CGTACTTCCTCCGTTCCGAATT 60.416 50.000 0.00 0.00 0.00 2.17
637 638 1.133790 CGTACTTCCTCCGTTCCGAAT 59.866 52.381 0.00 0.00 0.00 3.34
638 639 0.523072 CGTACTTCCTCCGTTCCGAA 59.477 55.000 0.00 0.00 0.00 4.30
639 640 0.606401 ACGTACTTCCTCCGTTCCGA 60.606 55.000 0.00 0.00 0.00 4.55
640 641 1.086696 TACGTACTTCCTCCGTTCCG 58.913 55.000 0.00 0.00 36.12 4.30
641 642 1.202076 CGTACGTACTTCCTCCGTTCC 60.202 57.143 22.55 0.00 36.12 3.62
642 643 1.464997 ACGTACGTACTTCCTCCGTTC 59.535 52.381 21.41 0.00 36.12 3.95
643 644 1.523758 ACGTACGTACTTCCTCCGTT 58.476 50.000 21.41 0.00 36.12 4.44
644 645 2.000447 GTACGTACGTACTTCCTCCGT 59.000 52.381 38.40 15.61 45.30 4.69
645 646 2.721129 GTACGTACGTACTTCCTCCG 57.279 55.000 38.40 10.64 45.30 4.63
666 667 6.179040 TCAGTGGAGGAGAACTAACTAGTAC 58.821 44.000 0.00 0.00 34.99 2.73
667 668 6.215023 TCTCAGTGGAGGAGAACTAACTAGTA 59.785 42.308 0.00 0.00 41.69 1.82
668 669 5.014333 TCTCAGTGGAGGAGAACTAACTAGT 59.986 44.000 0.00 0.00 41.69 2.57
669 670 5.502079 TCTCAGTGGAGGAGAACTAACTAG 58.498 45.833 0.00 0.00 41.69 2.57
675 676 4.898861 GGATAATCTCAGTGGAGGAGAACT 59.101 45.833 0.00 0.00 44.01 3.01
676 677 4.651503 TGGATAATCTCAGTGGAGGAGAAC 59.348 45.833 0.00 0.00 44.01 3.01
677 678 4.883759 TGGATAATCTCAGTGGAGGAGAA 58.116 43.478 0.00 0.00 44.01 2.87
708 709 2.271800 GTTACTCATCTTGACCAGGCG 58.728 52.381 0.00 0.00 0.00 5.52
896 3915 4.245845 TGCTTGTTCACATACGACAGTA 57.754 40.909 0.00 0.00 37.24 2.74
897 3916 3.106242 TGCTTGTTCACATACGACAGT 57.894 42.857 0.00 0.00 0.00 3.55
898 3917 3.494626 ACTTGCTTGTTCACATACGACAG 59.505 43.478 0.00 0.00 0.00 3.51
910 3929 4.454678 TGAGATGTGAAGACTTGCTTGTT 58.545 39.130 0.00 0.00 36.83 2.83
913 3932 6.002704 AGATTTGAGATGTGAAGACTTGCTT 58.997 36.000 0.00 0.00 40.25 3.91
952 3971 3.306472 AGGCTAAGAGAGAACGAGGAT 57.694 47.619 0.00 0.00 0.00 3.24
954 3973 2.737039 GCAAGGCTAAGAGAGAACGAGG 60.737 54.545 0.00 0.00 0.00 4.63
958 3977 3.181502 GCAATGCAAGGCTAAGAGAGAAC 60.182 47.826 0.00 0.00 0.00 3.01
983 4002 2.870435 GCCATTGTGTTACGGAGACAGT 60.870 50.000 0.00 0.00 32.55 3.55
1042 4061 0.391661 ATGGCGAGAACAGCAACGAT 60.392 50.000 0.00 0.00 36.08 3.73
1125 4159 2.277404 GGTGGTGGTGGTGGTGTT 59.723 61.111 0.00 0.00 0.00 3.32
1217 4257 1.290324 CAGGATATCACCGGCCTCG 59.710 63.158 0.00 0.00 34.73 4.63
1218 4258 1.004440 GCAGGATATCACCGGCCTC 60.004 63.158 0.00 0.00 43.33 4.70
1219 4259 3.151906 GCAGGATATCACCGGCCT 58.848 61.111 0.00 0.00 43.33 5.19
1276 4316 3.430862 GGCACCGCTGCATTTCGA 61.431 61.111 4.88 0.00 46.28 3.71
1293 4333 1.498865 AAGGTTCAACAGCGTCGCAG 61.499 55.000 21.09 14.65 0.00 5.18
1302 4342 2.297701 GAGTTGCAGGAAGGTTCAACA 58.702 47.619 6.71 0.00 40.71 3.33
1431 4471 0.108377 TGCAGGCGTCACAATATCGT 60.108 50.000 0.00 0.00 0.00 3.73
1437 4477 2.661537 CTCGTGCAGGCGTCACAA 60.662 61.111 0.35 0.00 34.27 3.33
1500 4540 2.270850 GGTATGCAGTTGGGCGGA 59.729 61.111 0.00 0.00 36.28 5.54
1506 4546 1.407437 GGACTCCAGGGTATGCAGTTG 60.407 57.143 0.00 0.00 0.00 3.16
1548 4588 5.860941 ATGCAACACATACTAGCTAGAGT 57.139 39.130 27.45 17.89 37.17 3.24
1572 4612 2.088423 AGCAGACACGTTTGACCAAAA 58.912 42.857 0.00 0.00 31.33 2.44
1574 4614 1.013596 CAGCAGACACGTTTGACCAA 58.986 50.000 0.00 0.00 0.00 3.67
1673 4716 2.897350 GCGAAGATCGGGCCCAAG 60.897 66.667 24.92 6.44 40.84 3.61
1688 4731 2.095314 TGTAGCATCAAACCATTGTGCG 60.095 45.455 0.00 0.00 42.83 5.34
1713 4756 1.200020 GGACCCAAAGCACATTTCGAG 59.800 52.381 0.00 0.00 0.00 4.04
1714 4757 1.243902 GGACCCAAAGCACATTTCGA 58.756 50.000 0.00 0.00 0.00 3.71
1735 4778 1.942657 CCGTCGATTGCTTCATGGATT 59.057 47.619 0.00 0.00 0.00 3.01
1739 4782 1.464608 ACAACCGTCGATTGCTTCATG 59.535 47.619 0.00 0.00 0.00 3.07
1740 4783 1.808411 ACAACCGTCGATTGCTTCAT 58.192 45.000 0.00 0.00 0.00 2.57
1834 6512 5.540337 ACAAGGGATATGTGTCGTAGATGAT 59.460 40.000 0.00 0.00 40.67 2.45
1836 6514 5.201713 ACAAGGGATATGTGTCGTAGATG 57.798 43.478 0.00 0.00 40.67 2.90
1880 6558 6.302615 TGAAACGAATGCAAAAACAAAAGTG 58.697 32.000 0.00 0.00 0.00 3.16
1891 6569 6.741992 AGTAAGATCATGAAACGAATGCAA 57.258 33.333 0.00 0.00 0.00 4.08
1902 6580 4.635473 AGGGGGAGAAAGTAAGATCATGA 58.365 43.478 0.00 0.00 0.00 3.07
1960 6638 4.475944 AGCAAAATCGCATGACTTTACAC 58.524 39.130 0.00 0.00 0.00 2.90
1962 6640 5.734498 CACTAGCAAAATCGCATGACTTTAC 59.266 40.000 0.00 0.00 0.00 2.01
1968 6646 1.401552 GCCACTAGCAAAATCGCATGA 59.598 47.619 0.00 0.00 42.97 3.07
1974 6652 8.410735 GAGTACGTACTAGCCACTAGCAAAATC 61.411 44.444 27.44 6.11 39.61 2.17
1982 6660 5.027293 TGATGAGTACGTACTAGCCACTA 57.973 43.478 27.44 11.36 36.50 2.74
1988 6666 7.690224 CGATGATGATTGATGAGTACGTACTAG 59.310 40.741 27.44 0.00 36.50 2.57
1989 6667 7.386848 TCGATGATGATTGATGAGTACGTACTA 59.613 37.037 27.44 15.94 36.50 1.82
1996 6674 4.321230 CCCGTCGATGATGATTGATGAGTA 60.321 45.833 6.11 0.00 32.41 2.59
1999 6677 2.365293 ACCCGTCGATGATGATTGATGA 59.635 45.455 6.11 0.00 32.41 2.92
2000 6678 2.759191 ACCCGTCGATGATGATTGATG 58.241 47.619 6.11 0.00 0.00 3.07
2001 6679 3.306088 GGTACCCGTCGATGATGATTGAT 60.306 47.826 6.11 0.00 0.00 2.57
2002 6680 2.035449 GGTACCCGTCGATGATGATTGA 59.965 50.000 6.11 0.00 0.00 2.57
2003 6681 2.035961 AGGTACCCGTCGATGATGATTG 59.964 50.000 8.74 0.00 0.00 2.67
2004 6682 2.317040 AGGTACCCGTCGATGATGATT 58.683 47.619 8.74 0.00 0.00 2.57
2005 6683 1.996798 AGGTACCCGTCGATGATGAT 58.003 50.000 8.74 0.00 0.00 2.45
2026 6704 2.434336 GTCATCACATGCAGGTACCCTA 59.566 50.000 8.74 0.00 29.64 3.53
2047 6725 5.829924 AGGCAACCACCTGATATAGAAAATG 59.170 40.000 0.00 0.00 39.13 2.32
2050 6728 4.473196 TGAGGCAACCACCTGATATAGAAA 59.527 41.667 0.00 0.00 41.32 2.52
2062 6740 0.668535 GTTGAAGGTGAGGCAACCAC 59.331 55.000 11.43 4.45 43.20 4.16
2081 6759 2.955660 TGTTGCCTTGTTTTACCTCCTG 59.044 45.455 0.00 0.00 0.00 3.86
2096 6774 3.158676 TGGTAAGTAAACCCATGTTGCC 58.841 45.455 0.00 0.00 38.90 4.52
2107 6785 6.015265 GGTGGCAATTTAACCTGGTAAGTAAA 60.015 38.462 0.00 2.02 0.00 2.01
2118 6796 2.490115 TCGTCATGGTGGCAATTTAACC 59.510 45.455 0.00 0.00 34.38 2.85
2119 6797 3.840890 TCGTCATGGTGGCAATTTAAC 57.159 42.857 0.00 0.00 0.00 2.01
2122 6800 2.951642 CCTATCGTCATGGTGGCAATTT 59.048 45.455 0.00 0.00 0.00 1.82
2126 6804 1.146041 GCCTATCGTCATGGTGGCA 59.854 57.895 0.00 0.00 40.04 4.92
2196 6874 4.241681 GGGATCATTCTCATCGTAGAAGC 58.758 47.826 0.00 0.00 43.58 3.86
2198 6876 5.869649 TTGGGATCATTCTCATCGTAGAA 57.130 39.130 0.00 0.00 43.58 2.10
2199 6877 5.869649 TTTGGGATCATTCTCATCGTAGA 57.130 39.130 0.00 0.00 45.75 2.59
2207 6885 7.941238 TCTTTAGGATCATTTGGGATCATTCTC 59.059 37.037 5.63 0.00 44.38 2.87
2254 6932 1.710013 TTTTCTTAGCGCTCAGGTCG 58.290 50.000 16.34 0.00 0.00 4.79
2285 6963 1.395635 ATGACATTGTGGCATGCGAT 58.604 45.000 12.44 0.00 46.11 4.58
2286 6964 2.871021 ATGACATTGTGGCATGCGA 58.129 47.368 12.44 4.51 46.11 5.10
2372 7050 6.581388 TGATCCCATGGAGAGAAAATTAGT 57.419 37.500 15.22 0.00 34.05 2.24
2373 7051 7.943447 AGATTGATCCCATGGAGAGAAAATTAG 59.057 37.037 15.22 0.00 34.05 1.73
2374 7052 7.819500 AGATTGATCCCATGGAGAGAAAATTA 58.180 34.615 15.22 0.00 34.05 1.40
2381 7059 7.018487 AGATTTAGATTGATCCCATGGAGAG 57.982 40.000 15.22 0.00 34.05 3.20
2400 7078 8.378565 TCTTCAAGAGACCATTCACTTAGATTT 58.621 33.333 0.00 0.00 31.54 2.17
2420 7099 6.881065 AGAATCAAGATTTCATCGGTCTTCAA 59.119 34.615 0.00 0.00 30.19 2.69
2459 7138 4.514066 CCGCCGCCTATAAAACTTAAAGAT 59.486 41.667 0.00 0.00 0.00 2.40
2463 7142 1.941975 GCCGCCGCCTATAAAACTTAA 59.058 47.619 0.00 0.00 0.00 1.85
2491 7170 6.918067 ATATGGAATTTTAGGGGCTTTAGC 57.082 37.500 0.00 0.00 41.14 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.