Multiple sequence alignment - TraesCS1A01G323900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G323900 chr1A 100.000 4778 0 0 1 4778 514554873 514550096 0.000000e+00 8824
1 TraesCS1A01G323900 chr1A 80.570 386 47 19 4377 4753 566590190 566590556 6.090000e-69 272
2 TraesCS1A01G323900 chr1A 87.500 88 11 0 1015 1102 521331968 521332055 8.460000e-18 102
3 TraesCS1A01G323900 chr1B 92.031 4392 168 71 472 4778 564166046 564161752 0.000000e+00 6004
4 TraesCS1A01G323900 chr1B 90.476 210 19 1 229 438 680225373 680225581 4.710000e-70 276
5 TraesCS1A01G323900 chr1D 91.663 2603 98 54 435 2985 417577400 417574865 0.000000e+00 3494
6 TraesCS1A01G323900 chr1D 92.665 1227 52 21 3024 4246 417574866 417573674 0.000000e+00 1733
7 TraesCS1A01G323900 chr1D 97.137 489 14 0 4290 4778 417573667 417573179 0.000000e+00 826
8 TraesCS1A01G323900 chr2D 79.669 846 109 36 2961 3767 493195450 493194629 6.990000e-153 551
9 TraesCS1A01G323900 chr2D 80.965 373 48 12 2961 3332 87414390 87414040 1.690000e-69 274
10 TraesCS1A01G323900 chr2D 92.135 89 7 0 149 237 595752422 595752334 5.020000e-25 126
11 TraesCS1A01G323900 chr2B 78.723 846 116 34 2961 3767 581584960 581584140 1.530000e-139 507
12 TraesCS1A01G323900 chr2B 88.701 354 24 10 3914 4266 77877104 77876766 7.400000e-113 418
13 TraesCS1A01G323900 chr2B 90.588 85 6 2 4439 4521 331027275 331027359 1.410000e-20 111
14 TraesCS1A01G323900 chrUn 88.701 354 24 10 3914 4266 240128728 240128390 7.400000e-113 418
15 TraesCS1A01G323900 chrUn 88.857 350 24 9 3917 4266 435744926 435744592 2.660000e-112 416
16 TraesCS1A01G323900 chr4B 88.418 354 25 10 3914 4266 517726313 517726651 3.440000e-111 412
17 TraesCS1A01G323900 chr4B 91.765 85 6 1 149 233 643298113 643298196 3.020000e-22 117
18 TraesCS1A01G323900 chr3B 88.136 354 26 8 3914 4266 170507271 170507609 1.600000e-109 407
19 TraesCS1A01G323900 chr5B 87.853 354 27 10 3914 4266 140517300 140516962 7.450000e-108 401
20 TraesCS1A01G323900 chr5A 87.853 354 27 10 3914 4266 88286341 88286003 7.450000e-108 401
21 TraesCS1A01G323900 chr5A 95.062 81 4 0 149 229 272546426 272546346 1.400000e-25 128
22 TraesCS1A01G323900 chr5A 87.255 102 13 0 4444 4545 66049294 66049193 3.020000e-22 117
23 TraesCS1A01G323900 chr6B 87.571 354 28 9 3914 4266 407595427 407595089 3.470000e-106 396
24 TraesCS1A01G323900 chr6B 87.571 354 28 10 3914 4266 418246684 418246346 3.470000e-106 396
25 TraesCS1A01G323900 chr6B 87.006 354 30 8 3914 4266 91904824 91905162 7.500000e-103 385
26 TraesCS1A01G323900 chr6B 91.262 103 9 0 1000 1102 71148075 71148177 1.790000e-29 141
27 TraesCS1A01G323900 chr4A 92.991 214 14 1 228 441 27113971 27113759 1.290000e-80 311
28 TraesCS1A01G323900 chr4A 93.827 81 5 0 149 229 393982925 393983005 6.490000e-24 122
29 TraesCS1A01G323900 chr2A 77.547 579 71 28 3233 3767 733431486 733432049 1.300000e-75 294
30 TraesCS1A01G323900 chr2A 82.069 290 33 9 2961 3247 733429734 733430007 3.720000e-56 230
31 TraesCS1A01G323900 chr2A 88.542 96 10 1 149 243 120109181 120109086 1.090000e-21 115
32 TraesCS1A01G323900 chr7B 93.367 196 12 1 238 433 354396448 354396254 6.050000e-74 289
33 TraesCS1A01G323900 chr7A 93.333 195 12 1 236 430 118103508 118103701 2.180000e-73 287
34 TraesCS1A01G323900 chr7A 86.800 250 27 6 229 473 19903142 19902894 1.690000e-69 274
35 TraesCS1A01G323900 chr7A 89.862 217 17 5 228 443 105834841 105834629 1.690000e-69 274
36 TraesCS1A01G323900 chr7A 92.222 90 5 2 149 236 533566811 533566722 5.020000e-25 126
37 TraesCS1A01G323900 chr6A 91.429 210 17 1 231 440 38766544 38766752 2.180000e-73 287
38 TraesCS1A01G323900 chr6A 87.903 124 14 1 1000 1123 38550579 38550701 1.390000e-30 145
39 TraesCS1A01G323900 chr3A 90.783 217 16 4 224 439 42955495 42955282 2.180000e-73 287
40 TraesCS1A01G323900 chr3A 92.771 83 5 1 149 230 674263321 674263403 8.400000e-23 119
41 TraesCS1A01G323900 chr3D 90.610 213 18 2 228 439 392897615 392897404 1.010000e-71 281
42 TraesCS1A01G323900 chr6D 91.262 103 9 0 1000 1102 34394980 34395082 1.790000e-29 141
43 TraesCS1A01G323900 chr6D 93.750 80 5 0 148 227 160229512 160229433 2.340000e-23 121
44 TraesCS1A01G323900 chr5D 92.857 84 5 1 153 236 502582576 502582494 2.340000e-23 121
45 TraesCS1A01G323900 chr7D 91.139 79 7 0 4444 4522 326034705 326034627 1.820000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G323900 chr1A 514550096 514554873 4777 True 8824.000000 8824 100.000000 1 4778 1 chr1A.!!$R1 4777
1 TraesCS1A01G323900 chr1B 564161752 564166046 4294 True 6004.000000 6004 92.031000 472 4778 1 chr1B.!!$R1 4306
2 TraesCS1A01G323900 chr1D 417573179 417577400 4221 True 2017.666667 3494 93.821667 435 4778 3 chr1D.!!$R1 4343
3 TraesCS1A01G323900 chr2D 493194629 493195450 821 True 551.000000 551 79.669000 2961 3767 1 chr2D.!!$R2 806
4 TraesCS1A01G323900 chr2B 581584140 581584960 820 True 507.000000 507 78.723000 2961 3767 1 chr2B.!!$R2 806
5 TraesCS1A01G323900 chr2A 733429734 733432049 2315 False 262.000000 294 79.808000 2961 3767 2 chr2A.!!$F1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 667 0.036577 GCCATCTCCATCTCCATCGG 60.037 60.0 0.0 0.0 0.0 4.18 F
652 668 0.036577 CCATCTCCATCTCCATCGGC 60.037 60.0 0.0 0.0 0.0 5.54 F
2086 2202 0.107945 ATGTCTTCCTGCTCGCCTTC 60.108 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 1548 0.404426 TCCTCACTTGGAGTCGGAGA 59.596 55.0 0.0 0.0 42.4 3.71 R
2385 2501 1.305219 GCACGCCAAGCATAGTTCCA 61.305 55.0 0.0 0.0 0.0 3.53 R
4016 5699 1.009829 GCACTCCATGTTCATCGTCC 58.990 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.452078 TGTAAGCATTTCCTCCAAAACTG 57.548 39.130 0.00 0.00 0.00 3.16
23 24 5.136828 TGTAAGCATTTCCTCCAAAACTGA 58.863 37.500 0.00 0.00 0.00 3.41
24 25 4.590850 AAGCATTTCCTCCAAAACTGAC 57.409 40.909 0.00 0.00 0.00 3.51
25 26 3.837355 AGCATTTCCTCCAAAACTGACT 58.163 40.909 0.00 0.00 0.00 3.41
26 27 3.571401 AGCATTTCCTCCAAAACTGACTG 59.429 43.478 0.00 0.00 0.00 3.51
27 28 3.305608 GCATTTCCTCCAAAACTGACTGG 60.306 47.826 0.00 0.00 0.00 4.00
28 29 2.656947 TTCCTCCAAAACTGACTGGG 57.343 50.000 0.00 0.00 33.19 4.45
29 30 1.814429 TCCTCCAAAACTGACTGGGA 58.186 50.000 0.00 0.00 33.19 4.37
30 31 2.348472 TCCTCCAAAACTGACTGGGAT 58.652 47.619 0.00 0.00 33.19 3.85
31 32 2.040278 TCCTCCAAAACTGACTGGGATG 59.960 50.000 0.00 0.00 33.19 3.51
32 33 2.440409 CTCCAAAACTGACTGGGATGG 58.560 52.381 0.00 0.00 33.19 3.51
33 34 0.890683 CCAAAACTGACTGGGATGGC 59.109 55.000 0.00 0.00 0.00 4.40
34 35 0.890683 CAAAACTGACTGGGATGGCC 59.109 55.000 0.00 0.00 0.00 5.36
35 36 0.779997 AAAACTGACTGGGATGGCCT 59.220 50.000 3.32 0.00 0.00 5.19
36 37 0.038744 AAACTGACTGGGATGGCCTG 59.961 55.000 3.32 0.00 0.00 4.85
37 38 1.136329 AACTGACTGGGATGGCCTGT 61.136 55.000 3.32 0.00 0.00 4.00
38 39 1.222936 CTGACTGGGATGGCCTGTC 59.777 63.158 3.32 1.67 37.77 3.51
39 40 1.229625 TGACTGGGATGGCCTGTCT 60.230 57.895 3.32 0.00 37.96 3.41
40 41 1.222936 GACTGGGATGGCCTGTCTG 59.777 63.158 3.32 0.00 35.92 3.51
41 42 1.539869 ACTGGGATGGCCTGTCTGT 60.540 57.895 3.32 0.00 0.00 3.41
42 43 1.222936 CTGGGATGGCCTGTCTGTC 59.777 63.158 3.32 0.00 0.00 3.51
43 44 2.187946 GGGATGGCCTGTCTGTCG 59.812 66.667 3.32 0.00 0.00 4.35
44 45 2.187946 GGATGGCCTGTCTGTCGG 59.812 66.667 3.32 0.00 0.00 4.79
45 46 2.187946 GATGGCCTGTCTGTCGGG 59.812 66.667 3.32 0.00 45.06 5.14
46 47 2.607750 ATGGCCTGTCTGTCGGGT 60.608 61.111 3.32 0.00 44.16 5.28
47 48 2.185310 GATGGCCTGTCTGTCGGGTT 62.185 60.000 3.32 0.00 44.16 4.11
48 49 1.779061 ATGGCCTGTCTGTCGGGTTT 61.779 55.000 3.32 0.00 44.16 3.27
49 50 1.671379 GGCCTGTCTGTCGGGTTTC 60.671 63.158 0.00 0.00 44.16 2.78
50 51 1.371558 GCCTGTCTGTCGGGTTTCT 59.628 57.895 1.82 0.00 44.16 2.52
51 52 0.951040 GCCTGTCTGTCGGGTTTCTG 60.951 60.000 1.82 0.00 44.16 3.02
52 53 0.679505 CCTGTCTGTCGGGTTTCTGA 59.320 55.000 0.00 0.00 37.78 3.27
53 54 1.276421 CCTGTCTGTCGGGTTTCTGAT 59.724 52.381 0.00 0.00 37.78 2.90
54 55 2.341257 CTGTCTGTCGGGTTTCTGATG 58.659 52.381 0.00 0.00 0.00 3.07
55 56 1.691976 TGTCTGTCGGGTTTCTGATGT 59.308 47.619 0.00 0.00 0.00 3.06
56 57 2.894765 TGTCTGTCGGGTTTCTGATGTA 59.105 45.455 0.00 0.00 0.00 2.29
57 58 3.251571 GTCTGTCGGGTTTCTGATGTAC 58.748 50.000 0.00 0.00 0.00 2.90
58 59 2.894765 TCTGTCGGGTTTCTGATGTACA 59.105 45.455 0.00 0.00 0.00 2.90
59 60 3.322541 TCTGTCGGGTTTCTGATGTACAA 59.677 43.478 0.00 0.00 0.00 2.41
60 61 4.062293 CTGTCGGGTTTCTGATGTACAAA 58.938 43.478 0.00 0.00 0.00 2.83
61 62 4.647611 TGTCGGGTTTCTGATGTACAAAT 58.352 39.130 0.00 0.00 0.00 2.32
62 63 5.795972 TGTCGGGTTTCTGATGTACAAATA 58.204 37.500 0.00 0.00 0.00 1.40
63 64 6.231951 TGTCGGGTTTCTGATGTACAAATAA 58.768 36.000 0.00 0.00 0.00 1.40
64 65 6.882140 TGTCGGGTTTCTGATGTACAAATAAT 59.118 34.615 0.00 0.00 0.00 1.28
65 66 7.065324 TGTCGGGTTTCTGATGTACAAATAATC 59.935 37.037 0.00 0.00 0.00 1.75
66 67 6.540914 TCGGGTTTCTGATGTACAAATAATCC 59.459 38.462 0.00 0.00 0.00 3.01
67 68 6.238648 CGGGTTTCTGATGTACAAATAATCCC 60.239 42.308 0.00 9.14 0.00 3.85
68 69 6.605594 GGGTTTCTGATGTACAAATAATCCCA 59.394 38.462 16.90 2.06 31.75 4.37
69 70 7.287696 GGGTTTCTGATGTACAAATAATCCCAT 59.712 37.037 16.90 0.00 31.75 4.00
70 71 8.695456 GGTTTCTGATGTACAAATAATCCCATT 58.305 33.333 0.00 0.00 0.00 3.16
71 72 9.520204 GTTTCTGATGTACAAATAATCCCATTG 57.480 33.333 0.00 0.00 0.00 2.82
72 73 9.473007 TTTCTGATGTACAAATAATCCCATTGA 57.527 29.630 0.00 0.00 0.00 2.57
73 74 8.681486 TCTGATGTACAAATAATCCCATTGAG 57.319 34.615 0.00 0.00 0.00 3.02
74 75 7.229306 TCTGATGTACAAATAATCCCATTGAGC 59.771 37.037 0.00 0.00 0.00 4.26
75 76 7.062322 TGATGTACAAATAATCCCATTGAGCT 58.938 34.615 0.00 0.00 0.00 4.09
76 77 8.217111 TGATGTACAAATAATCCCATTGAGCTA 58.783 33.333 0.00 0.00 0.00 3.32
77 78 8.995027 ATGTACAAATAATCCCATTGAGCTAA 57.005 30.769 0.00 0.00 0.00 3.09
78 79 8.450578 TGTACAAATAATCCCATTGAGCTAAG 57.549 34.615 0.00 0.00 0.00 2.18
79 80 8.052748 TGTACAAATAATCCCATTGAGCTAAGT 58.947 33.333 0.00 0.00 0.00 2.24
80 81 7.338800 ACAAATAATCCCATTGAGCTAAGTG 57.661 36.000 0.00 0.00 0.00 3.16
81 82 6.322201 ACAAATAATCCCATTGAGCTAAGTGG 59.678 38.462 5.59 5.59 0.00 4.00
82 83 5.653255 ATAATCCCATTGAGCTAAGTGGT 57.347 39.130 11.56 0.00 0.00 4.16
83 84 4.322057 AATCCCATTGAGCTAAGTGGTT 57.678 40.909 11.56 0.00 0.00 3.67
84 85 5.450818 AATCCCATTGAGCTAAGTGGTTA 57.549 39.130 11.56 0.05 0.00 2.85
85 86 4.487714 TCCCATTGAGCTAAGTGGTTAG 57.512 45.455 11.56 0.00 39.04 2.34
100 101 9.216117 CTAAGTGGTTAGCATTAGTAGTTTTGT 57.784 33.333 0.00 0.00 29.44 2.83
101 102 8.459911 AAGTGGTTAGCATTAGTAGTTTTGTT 57.540 30.769 0.00 0.00 0.00 2.83
102 103 8.459911 AGTGGTTAGCATTAGTAGTTTTGTTT 57.540 30.769 0.00 0.00 0.00 2.83
103 104 8.909923 AGTGGTTAGCATTAGTAGTTTTGTTTT 58.090 29.630 0.00 0.00 0.00 2.43
104 105 9.177304 GTGGTTAGCATTAGTAGTTTTGTTTTC 57.823 33.333 0.00 0.00 0.00 2.29
105 106 9.127277 TGGTTAGCATTAGTAGTTTTGTTTTCT 57.873 29.630 0.00 0.00 0.00 2.52
106 107 9.394477 GGTTAGCATTAGTAGTTTTGTTTTCTG 57.606 33.333 0.00 0.00 0.00 3.02
107 108 8.902735 GTTAGCATTAGTAGTTTTGTTTTCTGC 58.097 33.333 0.00 0.00 0.00 4.26
108 109 7.277174 AGCATTAGTAGTTTTGTTTTCTGCT 57.723 32.000 0.00 0.00 0.00 4.24
109 110 8.391075 AGCATTAGTAGTTTTGTTTTCTGCTA 57.609 30.769 0.00 0.00 33.66 3.49
110 111 8.846211 AGCATTAGTAGTTTTGTTTTCTGCTAA 58.154 29.630 0.00 0.00 39.34 3.09
111 112 9.458374 GCATTAGTAGTTTTGTTTTCTGCTAAA 57.542 29.630 0.00 0.00 38.84 1.85
119 120 9.952188 AGTTTTGTTTTCTGCTAAATAAGAGTC 57.048 29.630 0.00 0.00 0.00 3.36
120 121 9.181805 GTTTTGTTTTCTGCTAAATAAGAGTCC 57.818 33.333 0.00 0.00 0.00 3.85
121 122 8.458573 TTTGTTTTCTGCTAAATAAGAGTCCA 57.541 30.769 0.00 0.00 0.00 4.02
122 123 8.458573 TTGTTTTCTGCTAAATAAGAGTCCAA 57.541 30.769 0.00 0.00 0.00 3.53
123 124 7.871853 TGTTTTCTGCTAAATAAGAGTCCAAC 58.128 34.615 0.00 0.00 0.00 3.77
124 125 7.719633 TGTTTTCTGCTAAATAAGAGTCCAACT 59.280 33.333 0.00 0.00 0.00 3.16
125 126 9.216117 GTTTTCTGCTAAATAAGAGTCCAACTA 57.784 33.333 0.00 0.00 0.00 2.24
126 127 9.787435 TTTTCTGCTAAATAAGAGTCCAACTAA 57.213 29.630 0.00 0.00 0.00 2.24
127 128 8.773404 TTCTGCTAAATAAGAGTCCAACTAAC 57.227 34.615 0.00 0.00 0.00 2.34
128 129 7.033791 TCTGCTAAATAAGAGTCCAACTAACG 58.966 38.462 0.00 0.00 0.00 3.18
129 130 6.694447 TGCTAAATAAGAGTCCAACTAACGT 58.306 36.000 0.00 0.00 0.00 3.99
130 131 6.588756 TGCTAAATAAGAGTCCAACTAACGTG 59.411 38.462 0.00 0.00 0.00 4.49
131 132 6.589139 GCTAAATAAGAGTCCAACTAACGTGT 59.411 38.462 0.00 0.00 0.00 4.49
132 133 6.780706 AAATAAGAGTCCAACTAACGTGTG 57.219 37.500 0.00 0.00 0.00 3.82
133 134 3.814005 AAGAGTCCAACTAACGTGTGT 57.186 42.857 0.00 0.00 0.00 3.72
134 135 4.924305 AAGAGTCCAACTAACGTGTGTA 57.076 40.909 0.00 0.00 0.00 2.90
135 136 5.464030 AAGAGTCCAACTAACGTGTGTAT 57.536 39.130 0.00 0.00 0.00 2.29
136 137 4.806330 AGAGTCCAACTAACGTGTGTATG 58.194 43.478 0.00 0.00 0.00 2.39
137 138 4.280174 AGAGTCCAACTAACGTGTGTATGT 59.720 41.667 0.00 0.00 0.00 2.29
138 139 4.553323 AGTCCAACTAACGTGTGTATGTC 58.447 43.478 0.00 0.00 0.00 3.06
139 140 3.676646 GTCCAACTAACGTGTGTATGTCC 59.323 47.826 0.00 0.00 0.00 4.02
140 141 3.321396 TCCAACTAACGTGTGTATGTCCA 59.679 43.478 0.00 0.00 0.00 4.02
141 142 3.430895 CCAACTAACGTGTGTATGTCCAC 59.569 47.826 0.00 0.00 35.86 4.02
145 146 3.786809 CGTGTGTATGTCCACGTCT 57.213 52.632 4.17 0.00 46.87 4.18
146 147 2.060326 CGTGTGTATGTCCACGTCTT 57.940 50.000 4.17 0.00 46.87 3.01
147 148 3.206034 CGTGTGTATGTCCACGTCTTA 57.794 47.619 4.17 0.00 46.87 2.10
148 149 3.168963 CGTGTGTATGTCCACGTCTTAG 58.831 50.000 4.17 0.00 46.87 2.18
149 150 2.921754 GTGTGTATGTCCACGTCTTAGC 59.078 50.000 0.00 0.00 38.20 3.09
150 151 2.559231 TGTGTATGTCCACGTCTTAGCA 59.441 45.455 0.00 0.00 38.20 3.49
151 152 3.006003 TGTGTATGTCCACGTCTTAGCAA 59.994 43.478 0.00 0.00 38.20 3.91
152 153 3.991773 GTGTATGTCCACGTCTTAGCAAA 59.008 43.478 0.00 0.00 0.00 3.68
153 154 4.449743 GTGTATGTCCACGTCTTAGCAAAA 59.550 41.667 0.00 0.00 0.00 2.44
154 155 4.688879 TGTATGTCCACGTCTTAGCAAAAG 59.311 41.667 0.00 0.00 0.00 2.27
155 156 3.188159 TGTCCACGTCTTAGCAAAAGT 57.812 42.857 0.00 0.00 0.00 2.66
156 157 4.325028 TGTCCACGTCTTAGCAAAAGTA 57.675 40.909 0.00 0.00 0.00 2.24
157 158 4.695396 TGTCCACGTCTTAGCAAAAGTAA 58.305 39.130 0.00 0.00 0.00 2.24
158 159 5.117584 TGTCCACGTCTTAGCAAAAGTAAA 58.882 37.500 0.00 0.00 0.00 2.01
159 160 5.585445 TGTCCACGTCTTAGCAAAAGTAAAA 59.415 36.000 0.00 0.00 0.00 1.52
160 161 6.261381 TGTCCACGTCTTAGCAAAAGTAAAAT 59.739 34.615 0.00 0.00 0.00 1.82
161 162 6.577427 GTCCACGTCTTAGCAAAAGTAAAATG 59.423 38.462 0.00 0.00 0.00 2.32
162 163 6.261381 TCCACGTCTTAGCAAAAGTAAAATGT 59.739 34.615 0.00 0.00 0.00 2.71
163 164 6.577427 CCACGTCTTAGCAAAAGTAAAATGTC 59.423 38.462 0.00 0.00 0.00 3.06
164 165 7.129622 CACGTCTTAGCAAAAGTAAAATGTCA 58.870 34.615 0.00 0.00 0.00 3.58
165 166 7.642194 CACGTCTTAGCAAAAGTAAAATGTCAA 59.358 33.333 0.00 0.00 0.00 3.18
166 167 8.185505 ACGTCTTAGCAAAAGTAAAATGTCAAA 58.814 29.630 0.00 0.00 0.00 2.69
167 168 9.180678 CGTCTTAGCAAAAGTAAAATGTCAAAT 57.819 29.630 0.00 0.00 0.00 2.32
179 180 9.995003 AGTAAAATGTCAAATTCTAAAATGGCA 57.005 25.926 0.00 0.00 0.00 4.92
184 185 8.652810 ATGTCAAATTCTAAAATGGCATAAGC 57.347 30.769 0.00 0.00 41.10 3.09
185 186 7.609960 TGTCAAATTCTAAAATGGCATAAGCA 58.390 30.769 0.00 0.00 44.61 3.91
186 187 8.093307 TGTCAAATTCTAAAATGGCATAAGCAA 58.907 29.630 0.00 0.00 44.61 3.91
187 188 8.934825 GTCAAATTCTAAAATGGCATAAGCAAA 58.065 29.630 0.00 0.00 44.61 3.68
188 189 9.153721 TCAAATTCTAAAATGGCATAAGCAAAG 57.846 29.630 0.00 0.00 44.61 2.77
189 190 8.938906 CAAATTCTAAAATGGCATAAGCAAAGT 58.061 29.630 0.00 0.00 44.61 2.66
190 191 8.483307 AATTCTAAAATGGCATAAGCAAAGTG 57.517 30.769 0.00 0.00 44.61 3.16
191 192 5.964758 TCTAAAATGGCATAAGCAAAGTGG 58.035 37.500 0.00 0.00 44.61 4.00
192 193 4.622260 AAAATGGCATAAGCAAAGTGGT 57.378 36.364 0.00 0.00 44.61 4.16
193 194 3.874392 AATGGCATAAGCAAAGTGGTC 57.126 42.857 0.00 0.00 44.61 4.02
194 195 2.284754 TGGCATAAGCAAAGTGGTCA 57.715 45.000 0.00 0.00 44.61 4.02
195 196 2.591923 TGGCATAAGCAAAGTGGTCAA 58.408 42.857 0.00 0.00 44.61 3.18
196 197 2.961741 TGGCATAAGCAAAGTGGTCAAA 59.038 40.909 0.00 0.00 44.61 2.69
197 198 3.386078 TGGCATAAGCAAAGTGGTCAAAA 59.614 39.130 0.00 0.00 44.61 2.44
198 199 3.989817 GGCATAAGCAAAGTGGTCAAAAG 59.010 43.478 0.00 0.00 44.61 2.27
199 200 3.429881 GCATAAGCAAAGTGGTCAAAAGC 59.570 43.478 0.00 0.00 41.58 3.51
200 201 4.797275 GCATAAGCAAAGTGGTCAAAAGCT 60.797 41.667 0.00 0.00 41.58 3.74
201 202 5.564651 GCATAAGCAAAGTGGTCAAAAGCTA 60.565 40.000 0.00 0.00 41.58 3.32
202 203 4.574599 AAGCAAAGTGGTCAAAAGCTAG 57.425 40.909 0.00 0.00 0.00 3.42
203 204 3.820557 AGCAAAGTGGTCAAAAGCTAGA 58.179 40.909 0.00 0.00 0.00 2.43
204 205 3.817647 AGCAAAGTGGTCAAAAGCTAGAG 59.182 43.478 0.00 0.00 0.00 2.43
205 206 3.610349 GCAAAGTGGTCAAAAGCTAGAGC 60.610 47.826 0.00 6.12 42.49 4.09
217 218 2.415697 GCTAGAGCGGCAAAAACAAA 57.584 45.000 1.45 0.00 0.00 2.83
218 219 2.738135 GCTAGAGCGGCAAAAACAAAA 58.262 42.857 1.45 0.00 0.00 2.44
219 220 3.317150 GCTAGAGCGGCAAAAACAAAAT 58.683 40.909 1.45 0.00 0.00 1.82
220 221 3.740832 GCTAGAGCGGCAAAAACAAAATT 59.259 39.130 1.45 0.00 0.00 1.82
221 222 4.211164 GCTAGAGCGGCAAAAACAAAATTT 59.789 37.500 1.45 0.00 0.00 1.82
222 223 5.277297 GCTAGAGCGGCAAAAACAAAATTTT 60.277 36.000 1.45 0.00 32.89 1.82
223 224 5.155509 AGAGCGGCAAAAACAAAATTTTC 57.844 34.783 1.45 0.00 30.31 2.29
224 225 4.035091 AGAGCGGCAAAAACAAAATTTTCC 59.965 37.500 1.45 0.00 30.31 3.13
225 226 3.066064 AGCGGCAAAAACAAAATTTTCCC 59.934 39.130 1.45 0.00 30.31 3.97
226 227 3.066064 GCGGCAAAAACAAAATTTTCCCT 59.934 39.130 0.00 0.00 29.51 4.20
227 228 4.439426 GCGGCAAAAACAAAATTTTCCCTT 60.439 37.500 0.00 0.00 29.51 3.95
228 229 5.645624 CGGCAAAAACAAAATTTTCCCTTT 58.354 33.333 0.00 0.00 29.51 3.11
229 230 6.678164 GCGGCAAAAACAAAATTTTCCCTTTA 60.678 34.615 0.00 0.00 29.51 1.85
230 231 7.421599 CGGCAAAAACAAAATTTTCCCTTTAT 58.578 30.769 0.00 0.00 29.51 1.40
231 232 7.918033 CGGCAAAAACAAAATTTTCCCTTTATT 59.082 29.630 0.00 0.00 29.51 1.40
259 260 6.249035 TCATTGTTGAGGAAATCGTTAACC 57.751 37.500 0.00 0.00 31.81 2.85
260 261 4.735662 TTGTTGAGGAAATCGTTAACCG 57.264 40.909 0.00 0.00 31.81 4.44
261 262 3.068560 TGTTGAGGAAATCGTTAACCGG 58.931 45.455 0.00 0.00 37.11 5.28
262 263 3.069289 GTTGAGGAAATCGTTAACCGGT 58.931 45.455 0.00 0.00 37.11 5.28
263 264 4.244862 GTTGAGGAAATCGTTAACCGGTA 58.755 43.478 8.00 0.00 37.11 4.02
264 265 4.114058 TGAGGAAATCGTTAACCGGTAG 57.886 45.455 8.00 0.00 37.11 3.18
265 266 3.511146 TGAGGAAATCGTTAACCGGTAGT 59.489 43.478 8.00 0.00 37.11 2.73
266 267 4.021192 TGAGGAAATCGTTAACCGGTAGTT 60.021 41.667 8.00 0.00 42.83 2.24
267 268 4.248058 AGGAAATCGTTAACCGGTAGTTG 58.752 43.478 8.00 0.00 39.67 3.16
268 269 3.181517 GGAAATCGTTAACCGGTAGTTGC 60.182 47.826 8.00 0.00 39.67 4.17
269 270 3.323751 AATCGTTAACCGGTAGTTGCT 57.676 42.857 8.00 0.00 39.67 3.91
270 271 2.352503 TCGTTAACCGGTAGTTGCTC 57.647 50.000 8.00 0.00 39.67 4.26
271 272 0.986992 CGTTAACCGGTAGTTGCTCG 59.013 55.000 8.00 2.62 39.67 5.03
275 276 3.870606 CCGGTAGTTGCTCGGTTG 58.129 61.111 0.00 0.00 39.04 3.77
276 277 1.740296 CCGGTAGTTGCTCGGTTGG 60.740 63.158 0.00 0.00 39.04 3.77
277 278 2.388232 CGGTAGTTGCTCGGTTGGC 61.388 63.158 0.00 0.00 0.00 4.52
278 279 1.003718 GGTAGTTGCTCGGTTGGCT 60.004 57.895 0.00 0.00 0.00 4.75
279 280 1.298859 GGTAGTTGCTCGGTTGGCTG 61.299 60.000 0.00 0.00 0.00 4.85
280 281 1.003839 TAGTTGCTCGGTTGGCTGG 60.004 57.895 0.00 0.00 0.00 4.85
281 282 4.043200 GTTGCTCGGTTGGCTGGC 62.043 66.667 0.00 0.00 0.00 4.85
285 286 4.379243 CTCGGTTGGCTGGCGAGT 62.379 66.667 0.00 0.00 0.00 4.18
286 287 4.680237 TCGGTTGGCTGGCGAGTG 62.680 66.667 0.00 0.00 0.00 3.51
292 293 4.115199 GGCTGGCGAGTGGGGAAT 62.115 66.667 0.00 0.00 0.00 3.01
293 294 2.044946 GCTGGCGAGTGGGGAATT 60.045 61.111 0.00 0.00 0.00 2.17
294 295 1.223487 GCTGGCGAGTGGGGAATTA 59.777 57.895 0.00 0.00 0.00 1.40
295 296 0.393808 GCTGGCGAGTGGGGAATTAA 60.394 55.000 0.00 0.00 0.00 1.40
296 297 1.750682 GCTGGCGAGTGGGGAATTAAT 60.751 52.381 0.00 0.00 0.00 1.40
297 298 2.486548 GCTGGCGAGTGGGGAATTAATA 60.487 50.000 0.00 0.00 0.00 0.98
298 299 3.403038 CTGGCGAGTGGGGAATTAATAG 58.597 50.000 0.00 0.00 0.00 1.73
299 300 2.105821 TGGCGAGTGGGGAATTAATAGG 59.894 50.000 0.00 0.00 0.00 2.57
300 301 2.152016 GCGAGTGGGGAATTAATAGGC 58.848 52.381 0.00 0.00 0.00 3.93
301 302 2.224548 GCGAGTGGGGAATTAATAGGCT 60.225 50.000 0.00 0.00 0.00 4.58
302 303 3.007614 GCGAGTGGGGAATTAATAGGCTA 59.992 47.826 0.00 0.00 0.00 3.93
303 304 4.504340 GCGAGTGGGGAATTAATAGGCTAA 60.504 45.833 0.00 0.00 0.00 3.09
304 305 5.803470 GCGAGTGGGGAATTAATAGGCTAAT 60.803 44.000 0.00 0.00 0.00 1.73
305 306 6.238648 CGAGTGGGGAATTAATAGGCTAATT 58.761 40.000 0.00 0.00 34.81 1.40
306 307 6.149474 CGAGTGGGGAATTAATAGGCTAATTG 59.851 42.308 0.00 0.00 32.77 2.32
307 308 6.314917 AGTGGGGAATTAATAGGCTAATTGG 58.685 40.000 0.00 0.00 32.77 3.16
308 309 5.047306 GTGGGGAATTAATAGGCTAATTGGC 60.047 44.000 5.01 5.01 42.15 4.52
309 310 5.083821 GGGGAATTAATAGGCTAATTGGCA 58.916 41.667 16.20 0.00 44.55 4.92
310 311 5.542251 GGGGAATTAATAGGCTAATTGGCAA 59.458 40.000 16.20 0.68 44.55 4.52
311 312 6.295292 GGGGAATTAATAGGCTAATTGGCAAG 60.295 42.308 16.20 0.00 44.55 4.01
312 313 6.267699 GGGAATTAATAGGCTAATTGGCAAGT 59.732 38.462 16.20 5.58 44.55 3.16
313 314 7.202001 GGGAATTAATAGGCTAATTGGCAAGTT 60.202 37.037 16.20 8.71 44.55 2.66
314 315 8.856103 GGAATTAATAGGCTAATTGGCAAGTTA 58.144 33.333 16.20 7.80 44.55 2.24
318 319 4.900635 AGGCTAATTGGCAAGTTAATCG 57.099 40.909 16.20 0.00 44.55 3.34
319 320 3.632145 AGGCTAATTGGCAAGTTAATCGG 59.368 43.478 16.20 0.00 44.55 4.18
320 321 3.372060 GCTAATTGGCAAGTTAATCGGC 58.628 45.455 5.17 1.56 0.00 5.54
321 322 2.959507 AATTGGCAAGTTAATCGGCC 57.040 45.000 5.96 0.00 46.58 6.13
325 326 2.959507 GGCAAGTTAATCGGCCATTT 57.040 45.000 2.24 0.00 45.70 2.32
327 328 4.379339 GGCAAGTTAATCGGCCATTTAA 57.621 40.909 2.24 3.07 45.70 1.52
328 329 4.944048 GGCAAGTTAATCGGCCATTTAAT 58.056 39.130 2.24 0.00 45.70 1.40
329 330 4.982295 GGCAAGTTAATCGGCCATTTAATC 59.018 41.667 2.24 1.98 45.70 1.75
330 331 5.451242 GGCAAGTTAATCGGCCATTTAATCA 60.451 40.000 2.24 0.00 45.70 2.57
331 332 6.039616 GCAAGTTAATCGGCCATTTAATCAA 58.960 36.000 2.24 0.00 0.00 2.57
332 333 6.701400 GCAAGTTAATCGGCCATTTAATCAAT 59.299 34.615 2.24 0.00 0.00 2.57
333 334 7.224557 GCAAGTTAATCGGCCATTTAATCAATT 59.775 33.333 2.24 0.00 0.00 2.32
334 335 9.743057 CAAGTTAATCGGCCATTTAATCAATTA 57.257 29.630 2.24 0.00 0.00 1.40
338 339 9.619316 TTAATCGGCCATTTAATCAATTAATCG 57.381 29.630 2.24 0.00 32.78 3.34
339 340 6.007936 TCGGCCATTTAATCAATTAATCGG 57.992 37.500 2.24 2.40 32.78 4.18
340 341 5.765677 TCGGCCATTTAATCAATTAATCGGA 59.234 36.000 2.24 0.00 32.78 4.55
341 342 6.432783 TCGGCCATTTAATCAATTAATCGGAT 59.567 34.615 2.24 0.00 32.78 4.18
342 343 6.527722 CGGCCATTTAATCAATTAATCGGATG 59.472 38.462 2.24 6.47 32.78 3.51
343 344 7.574779 CGGCCATTTAATCAATTAATCGGATGA 60.575 37.037 2.24 0.00 32.78 2.92
344 345 8.253113 GGCCATTTAATCAATTAATCGGATGAT 58.747 33.333 0.00 0.16 35.98 2.45
345 346 9.643693 GCCATTTAATCAATTAATCGGATGATT 57.356 29.630 14.45 14.45 46.41 2.57
352 353 8.792830 ATCAATTAATCGGATGATTTATCGGT 57.207 30.769 0.00 0.00 42.14 4.69
353 354 8.615878 TCAATTAATCGGATGATTTATCGGTT 57.384 30.769 0.00 0.00 42.14 4.44
354 355 9.062524 TCAATTAATCGGATGATTTATCGGTTT 57.937 29.630 0.00 0.00 42.14 3.27
358 359 6.887376 ATCGGATGATTTATCGGTTTATCG 57.113 37.500 0.00 0.00 37.39 2.92
359 360 5.165676 TCGGATGATTTATCGGTTTATCGG 58.834 41.667 0.00 0.00 37.39 4.18
360 361 4.201685 CGGATGATTTATCGGTTTATCGGC 60.202 45.833 0.00 0.00 36.62 5.54
361 362 4.935808 GGATGATTTATCGGTTTATCGGCT 59.064 41.667 0.00 0.00 36.62 5.52
362 363 6.103997 GGATGATTTATCGGTTTATCGGCTA 58.896 40.000 0.00 0.00 36.62 3.93
363 364 6.035758 GGATGATTTATCGGTTTATCGGCTAC 59.964 42.308 0.00 0.00 36.62 3.58
364 365 6.092955 TGATTTATCGGTTTATCGGCTACT 57.907 37.500 0.00 0.00 0.00 2.57
365 366 6.154445 TGATTTATCGGTTTATCGGCTACTC 58.846 40.000 0.00 0.00 0.00 2.59
366 367 5.518848 TTTATCGGTTTATCGGCTACTCA 57.481 39.130 0.00 0.00 0.00 3.41
367 368 3.644884 ATCGGTTTATCGGCTACTCAG 57.355 47.619 0.00 0.00 0.00 3.35
368 369 2.372264 TCGGTTTATCGGCTACTCAGT 58.628 47.619 0.00 0.00 0.00 3.41
369 370 2.098607 TCGGTTTATCGGCTACTCAGTG 59.901 50.000 0.00 0.00 0.00 3.66
370 371 2.098607 CGGTTTATCGGCTACTCAGTGA 59.901 50.000 0.00 0.00 0.00 3.41
371 372 3.243434 CGGTTTATCGGCTACTCAGTGAT 60.243 47.826 0.00 0.00 0.00 3.06
372 373 4.299978 GGTTTATCGGCTACTCAGTGATC 58.700 47.826 0.00 0.00 0.00 2.92
373 374 4.299978 GTTTATCGGCTACTCAGTGATCC 58.700 47.826 0.00 0.00 0.00 3.36
374 375 2.373335 ATCGGCTACTCAGTGATCCT 57.627 50.000 0.00 0.00 0.00 3.24
375 376 3.510531 ATCGGCTACTCAGTGATCCTA 57.489 47.619 0.00 0.00 0.00 2.94
376 377 2.573369 TCGGCTACTCAGTGATCCTAC 58.427 52.381 0.00 0.00 0.00 3.18
377 378 1.264557 CGGCTACTCAGTGATCCTACG 59.735 57.143 0.00 0.00 0.00 3.51
378 379 2.573369 GGCTACTCAGTGATCCTACGA 58.427 52.381 0.00 0.00 0.00 3.43
379 380 2.550606 GGCTACTCAGTGATCCTACGAG 59.449 54.545 0.00 0.00 0.00 4.18
380 381 3.207778 GCTACTCAGTGATCCTACGAGT 58.792 50.000 0.00 12.05 37.78 4.18
381 382 4.378774 GCTACTCAGTGATCCTACGAGTA 58.621 47.826 0.00 12.66 36.54 2.59
382 383 4.449743 GCTACTCAGTGATCCTACGAGTAG 59.550 50.000 23.00 23.00 45.11 2.57
396 397 7.756395 CCTACGAGTAGGGATTAATCAGTAA 57.244 40.000 18.99 0.00 46.96 2.24
397 398 7.818642 CCTACGAGTAGGGATTAATCAGTAAG 58.181 42.308 18.99 4.80 46.96 2.34
398 399 7.447853 CCTACGAGTAGGGATTAATCAGTAAGT 59.552 40.741 18.99 9.71 46.96 2.24
399 400 7.657023 ACGAGTAGGGATTAATCAGTAAGTT 57.343 36.000 17.07 0.00 0.00 2.66
400 401 8.075761 ACGAGTAGGGATTAATCAGTAAGTTT 57.924 34.615 17.07 0.00 0.00 2.66
401 402 9.193806 ACGAGTAGGGATTAATCAGTAAGTTTA 57.806 33.333 17.07 0.00 0.00 2.01
406 407 8.507524 AGGGATTAATCAGTAAGTTTAACTGC 57.492 34.615 17.07 0.00 43.30 4.40
407 408 8.329502 AGGGATTAATCAGTAAGTTTAACTGCT 58.670 33.333 17.07 0.00 43.30 4.24
408 409 8.957466 GGGATTAATCAGTAAGTTTAACTGCTT 58.043 33.333 17.07 1.59 43.30 3.91
414 415 7.591006 TCAGTAAGTTTAACTGCTTAATCGG 57.409 36.000 0.00 0.00 43.30 4.18
415 416 7.380536 TCAGTAAGTTTAACTGCTTAATCGGA 58.619 34.615 0.00 0.00 43.30 4.55
416 417 7.330208 TCAGTAAGTTTAACTGCTTAATCGGAC 59.670 37.037 0.00 0.00 43.30 4.79
417 418 5.526010 AAGTTTAACTGCTTAATCGGACG 57.474 39.130 0.00 0.00 0.00 4.79
418 419 4.813027 AGTTTAACTGCTTAATCGGACGA 58.187 39.130 0.00 0.00 0.00 4.20
419 420 5.232463 AGTTTAACTGCTTAATCGGACGAA 58.768 37.500 0.00 0.00 0.00 3.85
420 421 5.873164 AGTTTAACTGCTTAATCGGACGAAT 59.127 36.000 0.00 0.00 0.00 3.34
421 422 6.370718 AGTTTAACTGCTTAATCGGACGAATT 59.629 34.615 0.00 0.00 0.00 2.17
422 423 4.859629 AACTGCTTAATCGGACGAATTC 57.140 40.909 0.00 0.00 0.00 2.17
423 424 4.124851 ACTGCTTAATCGGACGAATTCT 57.875 40.909 3.52 0.00 0.00 2.40
424 425 4.504858 ACTGCTTAATCGGACGAATTCTT 58.495 39.130 3.52 0.00 0.00 2.52
425 426 4.330074 ACTGCTTAATCGGACGAATTCTTG 59.670 41.667 3.52 0.00 0.00 3.02
426 427 4.500127 TGCTTAATCGGACGAATTCTTGA 58.500 39.130 3.52 0.00 0.00 3.02
427 428 4.932799 TGCTTAATCGGACGAATTCTTGAA 59.067 37.500 3.52 0.00 0.00 2.69
428 429 5.163893 TGCTTAATCGGACGAATTCTTGAAC 60.164 40.000 3.52 0.00 0.00 3.18
429 430 5.163893 GCTTAATCGGACGAATTCTTGAACA 60.164 40.000 3.52 0.00 0.00 3.18
430 431 6.456988 GCTTAATCGGACGAATTCTTGAACAT 60.457 38.462 3.52 0.00 0.00 2.71
431 432 4.864916 ATCGGACGAATTCTTGAACATG 57.135 40.909 3.52 0.00 0.00 3.21
432 433 3.000041 TCGGACGAATTCTTGAACATGG 59.000 45.455 3.52 0.00 0.00 3.66
433 434 3.000041 CGGACGAATTCTTGAACATGGA 59.000 45.455 3.52 0.00 0.00 3.41
434 435 3.623060 CGGACGAATTCTTGAACATGGAT 59.377 43.478 3.52 0.00 0.00 3.41
435 436 4.094887 CGGACGAATTCTTGAACATGGATT 59.905 41.667 3.52 0.00 0.00 3.01
436 437 5.293324 CGGACGAATTCTTGAACATGGATTA 59.707 40.000 3.52 0.00 0.00 1.75
437 438 6.017934 CGGACGAATTCTTGAACATGGATTAT 60.018 38.462 3.52 0.00 0.00 1.28
438 439 7.467267 CGGACGAATTCTTGAACATGGATTATT 60.467 37.037 3.52 0.00 0.00 1.40
439 440 8.836413 GGACGAATTCTTGAACATGGATTATTA 58.164 33.333 3.52 0.00 0.00 0.98
556 568 7.321745 AGTGACACCAAAAGTAAAGAAAGAG 57.678 36.000 0.84 0.00 0.00 2.85
650 666 0.975135 AGCCATCTCCATCTCCATCG 59.025 55.000 0.00 0.00 0.00 3.84
651 667 0.036577 GCCATCTCCATCTCCATCGG 60.037 60.000 0.00 0.00 0.00 4.18
652 668 0.036577 CCATCTCCATCTCCATCGGC 60.037 60.000 0.00 0.00 0.00 5.54
653 669 0.975135 CATCTCCATCTCCATCGGCT 59.025 55.000 0.00 0.00 0.00 5.52
654 670 0.975135 ATCTCCATCTCCATCGGCTG 59.025 55.000 0.00 0.00 0.00 4.85
680 715 1.135460 GTGAGCGAGTGGTAGTGGTAC 60.135 57.143 0.00 0.00 0.00 3.34
729 764 1.632409 TGCAAATCCTCCTCTGCTCTT 59.368 47.619 0.00 0.00 35.78 2.85
738 773 1.005805 TCCTCTGCTCTTCTCTGCTCT 59.994 52.381 0.00 0.00 0.00 4.09
740 775 1.820519 CTCTGCTCTTCTCTGCTCTGT 59.179 52.381 0.00 0.00 0.00 3.41
742 777 2.230992 TCTGCTCTTCTCTGCTCTGTTC 59.769 50.000 0.00 0.00 0.00 3.18
752 787 0.598419 TGCTCTGTTCGCTGTCTGTG 60.598 55.000 0.00 0.00 0.00 3.66
757 792 1.595382 GTTCGCTGTCTGTGGCTGT 60.595 57.895 0.00 0.00 0.00 4.40
758 793 1.146041 TTCGCTGTCTGTGGCTGTT 59.854 52.632 0.00 0.00 0.00 3.16
759 794 1.159713 TTCGCTGTCTGTGGCTGTTG 61.160 55.000 0.00 0.00 0.00 3.33
760 795 1.595109 CGCTGTCTGTGGCTGTTGA 60.595 57.895 0.00 0.00 0.00 3.18
761 796 1.563435 CGCTGTCTGTGGCTGTTGAG 61.563 60.000 0.00 0.00 0.00 3.02
865 905 2.286502 GGAGCCCCTTCCCTTCCT 60.287 66.667 0.00 0.00 0.00 3.36
974 1027 5.213891 TGAATTCAAGAAAGAAAAGGGCC 57.786 39.130 5.45 0.00 0.00 5.80
1108 1161 3.599285 TTCCCCACCGTAAGCTGCG 62.599 63.158 4.20 4.20 0.00 5.18
1132 1194 4.286291 TCCTTCCCTTCCTTCTTCAACTAC 59.714 45.833 0.00 0.00 0.00 2.73
1179 1241 7.423844 TGTACATGGATGGATGGATAGATAC 57.576 40.000 0.00 0.00 0.00 2.24
1217 1282 7.147655 CCCTTCTTAGAACAAGACAGATGGATA 60.148 40.741 0.00 0.00 32.83 2.59
1218 1283 8.428063 CCTTCTTAGAACAAGACAGATGGATAT 58.572 37.037 0.00 0.00 32.83 1.63
1245 1310 3.773560 TGGATTCCCCACTTTTACAAGG 58.226 45.455 0.00 0.00 40.82 3.61
1312 1377 5.510430 AGCCTTCCAAATACTAGGGAAAAG 58.490 41.667 0.00 0.00 40.00 2.27
1507 1588 5.567138 GAGTTTATCTCCACCCAACAATG 57.433 43.478 0.00 0.00 37.22 2.82
1508 1589 5.253330 GAGTTTATCTCCACCCAACAATGA 58.747 41.667 0.00 0.00 37.22 2.57
1509 1590 5.640147 AGTTTATCTCCACCCAACAATGAA 58.360 37.500 0.00 0.00 0.00 2.57
1510 1591 5.476945 AGTTTATCTCCACCCAACAATGAAC 59.523 40.000 0.00 0.00 0.00 3.18
1511 1592 2.286365 TCTCCACCCAACAATGAACC 57.714 50.000 0.00 0.00 0.00 3.62
1512 1593 1.496857 TCTCCACCCAACAATGAACCA 59.503 47.619 0.00 0.00 0.00 3.67
1513 1594 2.091610 TCTCCACCCAACAATGAACCAA 60.092 45.455 0.00 0.00 0.00 3.67
1514 1595 2.697751 CTCCACCCAACAATGAACCAAA 59.302 45.455 0.00 0.00 0.00 3.28
1515 1596 3.312890 TCCACCCAACAATGAACCAAAT 58.687 40.909 0.00 0.00 0.00 2.32
1527 1608 9.563748 AACAATGAACCAAATCAAATCAAATCT 57.436 25.926 0.00 0.00 32.06 2.40
1599 1703 3.860125 ACACACGCACACGCACAC 61.860 61.111 0.00 0.00 45.53 3.82
1614 1718 5.008613 ACACGCACACAATGACTTTTAGATT 59.991 36.000 0.00 0.00 0.00 2.40
1616 1720 7.094805 ACACGCACACAATGACTTTTAGATTAT 60.095 33.333 0.00 0.00 0.00 1.28
1617 1721 7.750458 CACGCACACAATGACTTTTAGATTATT 59.250 33.333 0.00 0.00 0.00 1.40
1671 1782 5.014018 TGCCACCCAATATGATGAATAGCTA 59.986 40.000 0.00 0.00 0.00 3.32
1758 1869 2.874701 CGTGCCTTATCCTCCATTTCTG 59.125 50.000 0.00 0.00 0.00 3.02
1863 1974 4.729868 GGATTATGGGATACTGCAGGTTT 58.270 43.478 19.93 1.31 0.00 3.27
1933 2049 5.878406 ACATCCTCGTTTCCATCTTCTAT 57.122 39.130 0.00 0.00 0.00 1.98
1941 2057 6.565234 TCGTTTCCATCTTCTATTCTCTGTC 58.435 40.000 0.00 0.00 0.00 3.51
1951 2067 6.715264 TCTTCTATTCTCTGTCTGTGTGTGTA 59.285 38.462 0.00 0.00 0.00 2.90
1992 2108 7.587037 ATCACACCCACCAGAATAATTAATG 57.413 36.000 0.00 0.00 0.00 1.90
2086 2202 0.107945 ATGTCTTCCTGCTCGCCTTC 60.108 55.000 0.00 0.00 0.00 3.46
2122 2238 1.661112 GCAAGCTACGAGAATGTCACC 59.339 52.381 0.00 0.00 0.00 4.02
2164 2280 5.785423 TCCTTTGATCCTCTCTGTTTCCTTA 59.215 40.000 0.00 0.00 0.00 2.69
2328 2444 1.355720 AGCTTGGTATATGCCCCCATC 59.644 52.381 7.44 0.00 32.85 3.51
2335 2451 1.544825 ATATGCCCCCATCCGTCTCG 61.545 60.000 0.00 0.00 32.85 4.04
2341 2457 1.271762 CCCCCATCCGTCTCGTATCTA 60.272 57.143 0.00 0.00 0.00 1.98
2376 2492 6.369890 TCTGCAAAGTATCACATTTCTCTGTC 59.630 38.462 0.00 0.00 0.00 3.51
2385 2501 5.311265 TCACATTTCTCTGTCATTCTTGCT 58.689 37.500 0.00 0.00 0.00 3.91
2479 2595 6.538742 TGTCTAAGTATAGGCATCTTTGTTGC 59.461 38.462 0.00 0.00 38.80 4.17
2846 2973 6.884295 CCCTGGTGTGAAATTAAGACTTGATA 59.116 38.462 0.00 0.00 0.00 2.15
2969 3096 5.985530 CAGTGACTAGACATCAGTTTGAACA 59.014 40.000 0.00 0.00 0.00 3.18
3045 3175 4.411256 ACCGAGGTCTGTTTTCTTTACA 57.589 40.909 0.00 0.00 0.00 2.41
3129 3259 4.730613 GCACACGTTCTTGTCAAATTCACT 60.731 41.667 0.00 0.00 0.00 3.41
3285 4907 1.139256 TCCGCATGTTTCGGCCTATTA 59.861 47.619 0.00 0.00 46.05 0.98
3295 4917 3.454371 TCGGCCTATTACTGCTTTCTC 57.546 47.619 0.00 0.00 0.00 2.87
3342 4982 8.251750 TGTTGTATAACTCAGCAACTATGTTC 57.748 34.615 3.89 0.00 41.04 3.18
3443 5086 6.242508 ACTCGGAAGCTTTATCTGTTTTTC 57.757 37.500 0.00 0.00 0.00 2.29
3486 5130 5.740569 GCATATGTGTATGTTCTGTTGCTTG 59.259 40.000 4.29 0.00 39.90 4.01
3611 5264 2.554032 ACAGCAGGTAAAATGAGTGCAC 59.446 45.455 9.40 9.40 36.57 4.57
3668 5342 2.625790 TGGGTTAGTGATTTGGTTGCAC 59.374 45.455 0.00 0.00 0.00 4.57
3795 5469 7.648142 TCTTGTAAAACTAGCTCAAAATGGTG 58.352 34.615 0.00 0.00 0.00 4.17
3842 5516 0.939577 TTGCAGTGTCTCGCTTCGAC 60.940 55.000 0.00 0.00 0.00 4.20
3878 5552 3.144193 CTCGCCTCGCCTCTCCTT 61.144 66.667 0.00 0.00 0.00 3.36
3879 5553 3.423162 CTCGCCTCGCCTCTCCTTG 62.423 68.421 0.00 0.00 0.00 3.61
3880 5554 3.764466 CGCCTCGCCTCTCCTTGT 61.764 66.667 0.00 0.00 0.00 3.16
3881 5555 2.665603 GCCTCGCCTCTCCTTGTT 59.334 61.111 0.00 0.00 0.00 2.83
3882 5556 1.743252 GCCTCGCCTCTCCTTGTTG 60.743 63.158 0.00 0.00 0.00 3.33
3883 5557 1.674057 CCTCGCCTCTCCTTGTTGT 59.326 57.895 0.00 0.00 0.00 3.32
3884 5558 0.035458 CCTCGCCTCTCCTTGTTGTT 59.965 55.000 0.00 0.00 0.00 2.83
3885 5559 1.151668 CTCGCCTCTCCTTGTTGTTG 58.848 55.000 0.00 0.00 0.00 3.33
3886 5560 0.468226 TCGCCTCTCCTTGTTGTTGT 59.532 50.000 0.00 0.00 0.00 3.32
3887 5561 1.134220 TCGCCTCTCCTTGTTGTTGTT 60.134 47.619 0.00 0.00 0.00 2.83
3888 5562 1.002468 CGCCTCTCCTTGTTGTTGTTG 60.002 52.381 0.00 0.00 0.00 3.33
3889 5563 2.024414 GCCTCTCCTTGTTGTTGTTGT 58.976 47.619 0.00 0.00 0.00 3.32
3890 5564 2.427095 GCCTCTCCTTGTTGTTGTTGTT 59.573 45.455 0.00 0.00 0.00 2.83
3891 5565 3.734902 GCCTCTCCTTGTTGTTGTTGTTG 60.735 47.826 0.00 0.00 0.00 3.33
3892 5566 3.443681 CCTCTCCTTGTTGTTGTTGTTGT 59.556 43.478 0.00 0.00 0.00 3.32
3893 5567 4.082245 CCTCTCCTTGTTGTTGTTGTTGTT 60.082 41.667 0.00 0.00 0.00 2.83
3894 5568 4.804108 TCTCCTTGTTGTTGTTGTTGTTG 58.196 39.130 0.00 0.00 0.00 3.33
3895 5569 4.279671 TCTCCTTGTTGTTGTTGTTGTTGT 59.720 37.500 0.00 0.00 0.00 3.32
3896 5570 4.950050 TCCTTGTTGTTGTTGTTGTTGTT 58.050 34.783 0.00 0.00 0.00 2.83
3897 5571 4.747108 TCCTTGTTGTTGTTGTTGTTGTTG 59.253 37.500 0.00 0.00 0.00 3.33
3898 5572 4.509600 CCTTGTTGTTGTTGTTGTTGTTGT 59.490 37.500 0.00 0.00 0.00 3.32
3899 5573 5.007136 CCTTGTTGTTGTTGTTGTTGTTGTT 59.993 36.000 0.00 0.00 0.00 2.83
3900 5574 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3944 5627 5.877564 GGCTTGATAAGGAAGATATGTAGGC 59.122 44.000 0.00 0.00 0.00 3.93
4032 5715 2.385013 TGTGGACGATGAACATGGAG 57.615 50.000 0.00 0.00 0.00 3.86
4133 5818 3.234386 GCAGTGGCAAATTTAGACGAAC 58.766 45.455 0.00 0.00 40.72 3.95
4153 5838 7.048512 ACGAACCCCAAATGTTTTGAAAAATA 58.951 30.769 1.65 0.00 0.00 1.40
4176 5861 3.225940 TCACACTCATCACTGACTGACT 58.774 45.455 0.00 0.00 0.00 3.41
4225 5910 9.959749 CAAGTCTGAGTAATACTAGAATCTTCC 57.040 37.037 0.00 0.00 0.00 3.46
4241 5926 1.255667 TTCCGGGGTGTCTCTGCTAC 61.256 60.000 0.00 0.00 0.00 3.58
4266 5951 6.710744 CCTTAACAATTCAGTTGGTACAGACT 59.289 38.462 0.00 0.00 39.64 3.24
4267 5952 7.876068 CCTTAACAATTCAGTTGGTACAGACTA 59.124 37.037 0.00 0.00 39.64 2.59
4268 5953 8.827177 TTAACAATTCAGTTGGTACAGACTAG 57.173 34.615 0.00 0.00 39.64 2.57
4269 5954 6.665992 ACAATTCAGTTGGTACAGACTAGA 57.334 37.500 0.00 0.00 42.39 2.43
4270 5955 6.456501 ACAATTCAGTTGGTACAGACTAGAC 58.543 40.000 0.00 0.00 42.39 2.59
4271 5956 6.267928 ACAATTCAGTTGGTACAGACTAGACT 59.732 38.462 0.00 0.00 42.39 3.24
4272 5957 7.450634 ACAATTCAGTTGGTACAGACTAGACTA 59.549 37.037 0.00 0.00 42.39 2.59
4273 5958 7.633193 ATTCAGTTGGTACAGACTAGACTAG 57.367 40.000 8.00 8.00 42.39 2.57
4302 5991 6.097839 AGACTAGACTAGACTAGACTGGACTG 59.902 46.154 28.46 12.44 41.24 3.51
4309 5998 2.240160 GACTAGACTGGACTGGAGGAGA 59.760 54.545 0.00 0.00 0.00 3.71
4328 6017 3.290710 AGAAAAAGCAGAGTGGAAGCAA 58.709 40.909 0.00 0.00 0.00 3.91
4356 6045 3.458163 GGATGTGTCTCCGGCGGA 61.458 66.667 29.14 29.14 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.241728 AGTCAGTTTTGGAGGAAATGCTTAC 59.758 40.000 0.00 0.00 0.00 2.34
2 3 5.241506 CAGTCAGTTTTGGAGGAAATGCTTA 59.758 40.000 0.00 0.00 0.00 3.09
4 5 3.571401 CAGTCAGTTTTGGAGGAAATGCT 59.429 43.478 0.00 0.00 0.00 3.79
5 6 3.305608 CCAGTCAGTTTTGGAGGAAATGC 60.306 47.826 0.00 0.00 36.55 3.56
6 7 3.256631 CCCAGTCAGTTTTGGAGGAAATG 59.743 47.826 0.00 0.00 36.55 2.32
7 8 3.140144 TCCCAGTCAGTTTTGGAGGAAAT 59.860 43.478 0.00 0.00 36.55 2.17
8 9 2.512056 TCCCAGTCAGTTTTGGAGGAAA 59.488 45.455 0.00 0.00 36.55 3.13
11 12 2.440409 CATCCCAGTCAGTTTTGGAGG 58.560 52.381 0.00 0.00 36.55 4.30
12 13 2.440409 CCATCCCAGTCAGTTTTGGAG 58.560 52.381 0.00 0.00 36.55 3.86
13 14 1.547675 GCCATCCCAGTCAGTTTTGGA 60.548 52.381 0.00 0.00 36.55 3.53
14 15 0.890683 GCCATCCCAGTCAGTTTTGG 59.109 55.000 0.00 0.00 0.00 3.28
15 16 0.890683 GGCCATCCCAGTCAGTTTTG 59.109 55.000 0.00 0.00 0.00 2.44
16 17 0.779997 AGGCCATCCCAGTCAGTTTT 59.220 50.000 5.01 0.00 35.39 2.43
18 19 1.136329 ACAGGCCATCCCAGTCAGTT 61.136 55.000 5.01 0.00 35.39 3.16
19 20 1.539869 ACAGGCCATCCCAGTCAGT 60.540 57.895 5.01 0.00 35.39 3.41
20 21 1.222936 GACAGGCCATCCCAGTCAG 59.777 63.158 5.01 0.00 46.35 3.51
21 22 3.403624 GACAGGCCATCCCAGTCA 58.596 61.111 5.01 0.00 46.35 3.41
23 24 1.539869 ACAGACAGGCCATCCCAGT 60.540 57.895 5.01 0.00 35.80 4.00
24 25 1.222936 GACAGACAGGCCATCCCAG 59.777 63.158 5.01 0.00 35.39 4.45
25 26 2.659063 CGACAGACAGGCCATCCCA 61.659 63.158 5.01 0.00 35.39 4.37
26 27 2.187946 CGACAGACAGGCCATCCC 59.812 66.667 5.01 0.00 0.00 3.85
27 28 2.187946 CCGACAGACAGGCCATCC 59.812 66.667 5.01 0.00 0.00 3.51
28 29 2.185310 AACCCGACAGACAGGCCATC 62.185 60.000 5.01 1.26 0.00 3.51
29 30 1.779061 AAACCCGACAGACAGGCCAT 61.779 55.000 5.01 0.00 0.00 4.40
30 31 2.391724 GAAACCCGACAGACAGGCCA 62.392 60.000 5.01 0.00 0.00 5.36
31 32 1.671379 GAAACCCGACAGACAGGCC 60.671 63.158 0.00 0.00 0.00 5.19
32 33 0.951040 CAGAAACCCGACAGACAGGC 60.951 60.000 0.00 0.00 0.00 4.85
33 34 0.679505 TCAGAAACCCGACAGACAGG 59.320 55.000 0.00 0.00 0.00 4.00
34 35 2.289072 ACATCAGAAACCCGACAGACAG 60.289 50.000 0.00 0.00 0.00 3.51
35 36 1.691976 ACATCAGAAACCCGACAGACA 59.308 47.619 0.00 0.00 0.00 3.41
36 37 2.457366 ACATCAGAAACCCGACAGAC 57.543 50.000 0.00 0.00 0.00 3.51
37 38 2.894765 TGTACATCAGAAACCCGACAGA 59.105 45.455 0.00 0.00 0.00 3.41
38 39 3.313012 TGTACATCAGAAACCCGACAG 57.687 47.619 0.00 0.00 0.00 3.51
39 40 3.755112 TTGTACATCAGAAACCCGACA 57.245 42.857 0.00 0.00 0.00 4.35
40 41 6.730960 TTATTTGTACATCAGAAACCCGAC 57.269 37.500 0.00 0.00 0.00 4.79
41 42 6.540914 GGATTATTTGTACATCAGAAACCCGA 59.459 38.462 0.00 0.00 0.00 5.14
42 43 6.238648 GGGATTATTTGTACATCAGAAACCCG 60.239 42.308 10.64 0.00 0.00 5.28
43 44 6.605594 TGGGATTATTTGTACATCAGAAACCC 59.394 38.462 15.90 15.90 32.71 4.11
44 45 7.639113 TGGGATTATTTGTACATCAGAAACC 57.361 36.000 0.00 0.00 0.00 3.27
45 46 9.520204 CAATGGGATTATTTGTACATCAGAAAC 57.480 33.333 0.00 0.00 0.00 2.78
46 47 9.473007 TCAATGGGATTATTTGTACATCAGAAA 57.527 29.630 0.00 0.00 0.00 2.52
47 48 9.123902 CTCAATGGGATTATTTGTACATCAGAA 57.876 33.333 0.00 0.00 0.00 3.02
48 49 7.229306 GCTCAATGGGATTATTTGTACATCAGA 59.771 37.037 0.00 0.00 0.00 3.27
49 50 7.230108 AGCTCAATGGGATTATTTGTACATCAG 59.770 37.037 0.00 0.00 0.00 2.90
50 51 7.062322 AGCTCAATGGGATTATTTGTACATCA 58.938 34.615 0.00 0.00 0.00 3.07
51 52 7.516198 AGCTCAATGGGATTATTTGTACATC 57.484 36.000 0.00 0.00 0.00 3.06
52 53 8.995027 TTAGCTCAATGGGATTATTTGTACAT 57.005 30.769 0.00 0.00 0.00 2.29
53 54 8.052748 ACTTAGCTCAATGGGATTATTTGTACA 58.947 33.333 0.00 0.00 0.00 2.90
54 55 8.345565 CACTTAGCTCAATGGGATTATTTGTAC 58.654 37.037 0.00 0.00 0.00 2.90
55 56 7.502226 CCACTTAGCTCAATGGGATTATTTGTA 59.498 37.037 0.00 0.00 0.00 2.41
56 57 6.322201 CCACTTAGCTCAATGGGATTATTTGT 59.678 38.462 0.00 0.00 0.00 2.83
57 58 6.322201 ACCACTTAGCTCAATGGGATTATTTG 59.678 38.462 13.11 0.00 36.47 2.32
58 59 6.435164 ACCACTTAGCTCAATGGGATTATTT 58.565 36.000 13.11 0.00 36.47 1.40
59 60 6.018433 ACCACTTAGCTCAATGGGATTATT 57.982 37.500 13.11 0.00 36.47 1.40
60 61 5.653255 ACCACTTAGCTCAATGGGATTAT 57.347 39.130 13.11 0.00 36.47 1.28
61 62 5.450818 AACCACTTAGCTCAATGGGATTA 57.549 39.130 13.11 0.00 36.47 1.75
62 63 4.322057 AACCACTTAGCTCAATGGGATT 57.678 40.909 13.11 0.00 36.47 3.01
63 64 5.041191 CTAACCACTTAGCTCAATGGGAT 57.959 43.478 13.11 5.74 36.47 3.85
64 65 4.487714 CTAACCACTTAGCTCAATGGGA 57.512 45.455 13.11 2.25 36.47 4.37
74 75 9.216117 ACAAAACTACTAATGCTAACCACTTAG 57.784 33.333 0.00 0.00 33.58 2.18
75 76 9.563748 AACAAAACTACTAATGCTAACCACTTA 57.436 29.630 0.00 0.00 0.00 2.24
76 77 8.459911 AACAAAACTACTAATGCTAACCACTT 57.540 30.769 0.00 0.00 0.00 3.16
77 78 8.459911 AAACAAAACTACTAATGCTAACCACT 57.540 30.769 0.00 0.00 0.00 4.00
78 79 9.177304 GAAAACAAAACTACTAATGCTAACCAC 57.823 33.333 0.00 0.00 0.00 4.16
79 80 9.127277 AGAAAACAAAACTACTAATGCTAACCA 57.873 29.630 0.00 0.00 0.00 3.67
80 81 9.394477 CAGAAAACAAAACTACTAATGCTAACC 57.606 33.333 0.00 0.00 0.00 2.85
81 82 8.902735 GCAGAAAACAAAACTACTAATGCTAAC 58.097 33.333 0.00 0.00 0.00 2.34
82 83 8.846211 AGCAGAAAACAAAACTACTAATGCTAA 58.154 29.630 0.00 0.00 37.36 3.09
83 84 8.391075 AGCAGAAAACAAAACTACTAATGCTA 57.609 30.769 0.00 0.00 37.36 3.49
84 85 7.277174 AGCAGAAAACAAAACTACTAATGCT 57.723 32.000 0.00 0.00 34.50 3.79
85 86 9.458374 TTTAGCAGAAAACAAAACTACTAATGC 57.542 29.630 0.00 0.00 0.00 3.56
93 94 9.952188 GACTCTTATTTAGCAGAAAACAAAACT 57.048 29.630 0.00 0.00 0.00 2.66
94 95 9.181805 GGACTCTTATTTAGCAGAAAACAAAAC 57.818 33.333 0.00 0.00 0.00 2.43
95 96 8.908903 TGGACTCTTATTTAGCAGAAAACAAAA 58.091 29.630 0.00 0.00 0.00 2.44
96 97 8.458573 TGGACTCTTATTTAGCAGAAAACAAA 57.541 30.769 0.00 0.00 0.00 2.83
97 98 8.349983 GTTGGACTCTTATTTAGCAGAAAACAA 58.650 33.333 0.00 0.00 0.00 2.83
98 99 7.719633 AGTTGGACTCTTATTTAGCAGAAAACA 59.280 33.333 0.00 0.00 0.00 2.83
99 100 8.100508 AGTTGGACTCTTATTTAGCAGAAAAC 57.899 34.615 0.00 0.00 0.00 2.43
100 101 9.787435 TTAGTTGGACTCTTATTTAGCAGAAAA 57.213 29.630 0.00 0.00 0.00 2.29
101 102 9.216117 GTTAGTTGGACTCTTATTTAGCAGAAA 57.784 33.333 0.00 0.00 0.00 2.52
102 103 7.544566 CGTTAGTTGGACTCTTATTTAGCAGAA 59.455 37.037 0.00 0.00 0.00 3.02
103 104 7.033791 CGTTAGTTGGACTCTTATTTAGCAGA 58.966 38.462 0.00 0.00 0.00 4.26
104 105 6.812160 ACGTTAGTTGGACTCTTATTTAGCAG 59.188 38.462 0.00 0.00 0.00 4.24
105 106 6.588756 CACGTTAGTTGGACTCTTATTTAGCA 59.411 38.462 0.00 0.00 0.00 3.49
106 107 6.589139 ACACGTTAGTTGGACTCTTATTTAGC 59.411 38.462 0.00 0.00 0.00 3.09
107 108 7.597743 ACACACGTTAGTTGGACTCTTATTTAG 59.402 37.037 0.00 0.00 0.00 1.85
108 109 7.436118 ACACACGTTAGTTGGACTCTTATTTA 58.564 34.615 0.00 0.00 0.00 1.40
109 110 6.285990 ACACACGTTAGTTGGACTCTTATTT 58.714 36.000 0.00 0.00 0.00 1.40
110 111 5.850614 ACACACGTTAGTTGGACTCTTATT 58.149 37.500 0.00 0.00 0.00 1.40
111 112 5.464030 ACACACGTTAGTTGGACTCTTAT 57.536 39.130 0.00 0.00 0.00 1.73
112 113 4.924305 ACACACGTTAGTTGGACTCTTA 57.076 40.909 0.00 0.00 0.00 2.10
113 114 3.814005 ACACACGTTAGTTGGACTCTT 57.186 42.857 0.00 0.00 0.00 2.85
114 115 4.280174 ACATACACACGTTAGTTGGACTCT 59.720 41.667 0.00 0.00 0.00 3.24
115 116 4.553323 ACATACACACGTTAGTTGGACTC 58.447 43.478 0.00 0.00 0.00 3.36
116 117 4.553323 GACATACACACGTTAGTTGGACT 58.447 43.478 0.00 0.00 0.00 3.85
117 118 3.676646 GGACATACACACGTTAGTTGGAC 59.323 47.826 0.00 0.00 0.00 4.02
118 119 3.321396 TGGACATACACACGTTAGTTGGA 59.679 43.478 0.00 0.00 0.00 3.53
119 120 3.430895 GTGGACATACACACGTTAGTTGG 59.569 47.826 0.00 0.00 40.99 3.77
120 121 4.640805 GTGGACATACACACGTTAGTTG 57.359 45.455 0.00 0.00 40.99 3.16
128 129 2.921754 GCTAAGACGTGGACATACACAC 59.078 50.000 0.00 0.00 41.38 3.82
129 130 2.559231 TGCTAAGACGTGGACATACACA 59.441 45.455 0.00 0.00 41.38 3.72
130 131 3.226346 TGCTAAGACGTGGACATACAC 57.774 47.619 0.00 0.00 37.99 2.90
131 132 3.945981 TTGCTAAGACGTGGACATACA 57.054 42.857 0.00 0.00 0.00 2.29
132 133 4.689345 ACTTTTGCTAAGACGTGGACATAC 59.311 41.667 0.00 0.00 0.00 2.39
133 134 4.890088 ACTTTTGCTAAGACGTGGACATA 58.110 39.130 0.00 0.00 0.00 2.29
134 135 3.740115 ACTTTTGCTAAGACGTGGACAT 58.260 40.909 0.00 0.00 0.00 3.06
135 136 3.188159 ACTTTTGCTAAGACGTGGACA 57.812 42.857 0.00 0.00 0.00 4.02
136 137 5.662211 TTTACTTTTGCTAAGACGTGGAC 57.338 39.130 0.00 0.00 0.00 4.02
137 138 6.261381 ACATTTTACTTTTGCTAAGACGTGGA 59.739 34.615 0.00 0.00 0.00 4.02
138 139 6.435428 ACATTTTACTTTTGCTAAGACGTGG 58.565 36.000 0.00 0.00 0.00 4.94
139 140 7.129622 TGACATTTTACTTTTGCTAAGACGTG 58.870 34.615 0.00 0.00 0.00 4.49
140 141 7.254227 TGACATTTTACTTTTGCTAAGACGT 57.746 32.000 6.22 0.00 0.00 4.34
141 142 8.555166 TTTGACATTTTACTTTTGCTAAGACG 57.445 30.769 6.22 0.00 0.00 4.18
153 154 9.995003 TGCCATTTTAGAATTTGACATTTTACT 57.005 25.926 0.00 0.00 0.00 2.24
158 159 9.101655 GCTTATGCCATTTTAGAATTTGACATT 57.898 29.630 0.00 0.00 0.00 2.71
159 160 8.259411 TGCTTATGCCATTTTAGAATTTGACAT 58.741 29.630 0.00 0.00 38.71 3.06
160 161 7.609960 TGCTTATGCCATTTTAGAATTTGACA 58.390 30.769 0.00 0.00 38.71 3.58
161 162 8.477984 TTGCTTATGCCATTTTAGAATTTGAC 57.522 30.769 0.00 0.00 38.71 3.18
162 163 9.153721 CTTTGCTTATGCCATTTTAGAATTTGA 57.846 29.630 0.00 0.00 38.71 2.69
163 164 8.938906 ACTTTGCTTATGCCATTTTAGAATTTG 58.061 29.630 0.00 0.00 38.71 2.32
164 165 8.938906 CACTTTGCTTATGCCATTTTAGAATTT 58.061 29.630 0.00 0.00 38.71 1.82
165 166 7.550196 CCACTTTGCTTATGCCATTTTAGAATT 59.450 33.333 0.00 0.00 38.71 2.17
166 167 7.043565 CCACTTTGCTTATGCCATTTTAGAAT 58.956 34.615 0.00 0.00 38.71 2.40
167 168 6.014669 ACCACTTTGCTTATGCCATTTTAGAA 60.015 34.615 0.00 0.00 38.71 2.10
168 169 5.480073 ACCACTTTGCTTATGCCATTTTAGA 59.520 36.000 0.00 0.00 38.71 2.10
169 170 5.723295 ACCACTTTGCTTATGCCATTTTAG 58.277 37.500 0.00 0.00 38.71 1.85
170 171 5.244851 TGACCACTTTGCTTATGCCATTTTA 59.755 36.000 0.00 0.00 38.71 1.52
171 172 4.040217 TGACCACTTTGCTTATGCCATTTT 59.960 37.500 0.00 0.00 38.71 1.82
172 173 3.577848 TGACCACTTTGCTTATGCCATTT 59.422 39.130 0.00 0.00 38.71 2.32
173 174 3.164268 TGACCACTTTGCTTATGCCATT 58.836 40.909 0.00 0.00 38.71 3.16
174 175 2.806434 TGACCACTTTGCTTATGCCAT 58.194 42.857 0.00 0.00 38.71 4.40
175 176 2.284754 TGACCACTTTGCTTATGCCA 57.715 45.000 0.00 0.00 38.71 4.92
176 177 3.658757 TTTGACCACTTTGCTTATGCC 57.341 42.857 0.00 0.00 38.71 4.40
177 178 3.429881 GCTTTTGACCACTTTGCTTATGC 59.570 43.478 0.00 0.00 40.20 3.14
178 179 4.874970 AGCTTTTGACCACTTTGCTTATG 58.125 39.130 0.00 0.00 0.00 1.90
179 180 6.003950 TCTAGCTTTTGACCACTTTGCTTAT 58.996 36.000 0.00 0.00 0.00 1.73
180 181 5.373222 TCTAGCTTTTGACCACTTTGCTTA 58.627 37.500 0.00 0.00 0.00 3.09
181 182 4.207165 TCTAGCTTTTGACCACTTTGCTT 58.793 39.130 0.00 0.00 0.00 3.91
182 183 3.817647 CTCTAGCTTTTGACCACTTTGCT 59.182 43.478 0.00 0.00 0.00 3.91
183 184 3.610349 GCTCTAGCTTTTGACCACTTTGC 60.610 47.826 0.00 0.00 38.21 3.68
184 185 3.364366 CGCTCTAGCTTTTGACCACTTTG 60.364 47.826 0.00 0.00 39.32 2.77
185 186 2.808543 CGCTCTAGCTTTTGACCACTTT 59.191 45.455 0.00 0.00 39.32 2.66
186 187 2.417719 CGCTCTAGCTTTTGACCACTT 58.582 47.619 0.00 0.00 39.32 3.16
187 188 1.338200 CCGCTCTAGCTTTTGACCACT 60.338 52.381 0.00 0.00 39.32 4.00
188 189 1.079503 CCGCTCTAGCTTTTGACCAC 58.920 55.000 0.00 0.00 39.32 4.16
189 190 0.673644 GCCGCTCTAGCTTTTGACCA 60.674 55.000 0.00 0.00 39.32 4.02
190 191 0.673644 TGCCGCTCTAGCTTTTGACC 60.674 55.000 0.00 0.00 39.32 4.02
191 192 1.156736 TTGCCGCTCTAGCTTTTGAC 58.843 50.000 0.00 0.00 39.32 3.18
192 193 1.890876 TTTGCCGCTCTAGCTTTTGA 58.109 45.000 0.00 0.00 39.32 2.69
193 194 2.704725 TTTTGCCGCTCTAGCTTTTG 57.295 45.000 0.00 0.00 39.32 2.44
194 195 2.360801 TGTTTTTGCCGCTCTAGCTTTT 59.639 40.909 0.00 0.00 39.32 2.27
195 196 1.953686 TGTTTTTGCCGCTCTAGCTTT 59.046 42.857 0.00 0.00 39.32 3.51
196 197 1.604604 TGTTTTTGCCGCTCTAGCTT 58.395 45.000 0.00 0.00 39.32 3.74
197 198 1.604604 TTGTTTTTGCCGCTCTAGCT 58.395 45.000 0.00 0.00 39.32 3.32
198 199 2.415697 TTTGTTTTTGCCGCTCTAGC 57.584 45.000 0.00 0.00 37.78 3.42
199 200 5.905480 AAATTTTGTTTTTGCCGCTCTAG 57.095 34.783 0.00 0.00 0.00 2.43
200 201 5.235401 GGAAAATTTTGTTTTTGCCGCTCTA 59.765 36.000 8.47 0.00 32.62 2.43
201 202 4.035091 GGAAAATTTTGTTTTTGCCGCTCT 59.965 37.500 8.47 0.00 32.62 4.09
202 203 4.278858 GGAAAATTTTGTTTTTGCCGCTC 58.721 39.130 8.47 0.00 32.62 5.03
203 204 3.066064 GGGAAAATTTTGTTTTTGCCGCT 59.934 39.130 8.47 0.00 43.94 5.52
204 205 3.367607 GGGAAAATTTTGTTTTTGCCGC 58.632 40.909 8.47 0.00 43.94 6.53
233 234 8.455682 GGTTAACGATTTCCTCAACAATGATAA 58.544 33.333 0.00 0.00 34.37 1.75
234 235 7.981142 GGTTAACGATTTCCTCAACAATGATA 58.019 34.615 0.00 0.00 34.37 2.15
235 236 6.852664 GGTTAACGATTTCCTCAACAATGAT 58.147 36.000 0.00 0.00 34.37 2.45
236 237 6.249035 GGTTAACGATTTCCTCAACAATGA 57.751 37.500 0.00 0.00 0.00 2.57
252 253 0.986992 CGAGCAACTACCGGTTAACG 59.013 55.000 15.04 6.02 43.80 3.18
253 254 1.353076 CCGAGCAACTACCGGTTAAC 58.647 55.000 15.04 0.00 38.55 2.01
254 255 3.818586 CCGAGCAACTACCGGTTAA 57.181 52.632 15.04 0.00 38.55 2.01
259 260 2.388232 GCCAACCGAGCAACTACCG 61.388 63.158 0.00 0.00 0.00 4.02
260 261 1.003718 AGCCAACCGAGCAACTACC 60.004 57.895 0.00 0.00 0.00 3.18
261 262 1.298859 CCAGCCAACCGAGCAACTAC 61.299 60.000 0.00 0.00 0.00 2.73
262 263 1.003839 CCAGCCAACCGAGCAACTA 60.004 57.895 0.00 0.00 0.00 2.24
263 264 2.281761 CCAGCCAACCGAGCAACT 60.282 61.111 0.00 0.00 0.00 3.16
264 265 4.043200 GCCAGCCAACCGAGCAAC 62.043 66.667 0.00 0.00 0.00 4.17
269 270 4.680237 CACTCGCCAGCCAACCGA 62.680 66.667 0.00 0.00 0.00 4.69
275 276 2.265467 TAATTCCCCACTCGCCAGCC 62.265 60.000 0.00 0.00 0.00 4.85
276 277 0.393808 TTAATTCCCCACTCGCCAGC 60.394 55.000 0.00 0.00 0.00 4.85
277 278 2.348411 ATTAATTCCCCACTCGCCAG 57.652 50.000 0.00 0.00 0.00 4.85
278 279 2.105821 CCTATTAATTCCCCACTCGCCA 59.894 50.000 0.00 0.00 0.00 5.69
279 280 2.779506 CCTATTAATTCCCCACTCGCC 58.220 52.381 0.00 0.00 0.00 5.54
280 281 2.152016 GCCTATTAATTCCCCACTCGC 58.848 52.381 0.00 0.00 0.00 5.03
281 282 3.771577 AGCCTATTAATTCCCCACTCG 57.228 47.619 0.00 0.00 0.00 4.18
282 283 6.434340 CCAATTAGCCTATTAATTCCCCACTC 59.566 42.308 0.00 0.00 32.38 3.51
283 284 6.314917 CCAATTAGCCTATTAATTCCCCACT 58.685 40.000 0.00 0.00 32.38 4.00
284 285 5.047306 GCCAATTAGCCTATTAATTCCCCAC 60.047 44.000 0.00 0.00 32.38 4.61
285 286 5.083821 GCCAATTAGCCTATTAATTCCCCA 58.916 41.667 0.00 0.00 32.38 4.96
286 287 5.083821 TGCCAATTAGCCTATTAATTCCCC 58.916 41.667 0.00 0.00 32.38 4.81
287 288 6.267699 ACTTGCCAATTAGCCTATTAATTCCC 59.732 38.462 0.00 0.00 32.38 3.97
288 289 7.290110 ACTTGCCAATTAGCCTATTAATTCC 57.710 36.000 0.00 0.00 32.38 3.01
292 293 8.564574 CGATTAACTTGCCAATTAGCCTATTAA 58.435 33.333 0.00 0.00 0.00 1.40
293 294 7.174253 CCGATTAACTTGCCAATTAGCCTATTA 59.826 37.037 0.00 0.00 0.00 0.98
294 295 6.016276 CCGATTAACTTGCCAATTAGCCTATT 60.016 38.462 0.00 0.00 0.00 1.73
295 296 5.473504 CCGATTAACTTGCCAATTAGCCTAT 59.526 40.000 0.00 0.00 0.00 2.57
296 297 4.819630 CCGATTAACTTGCCAATTAGCCTA 59.180 41.667 0.00 0.00 0.00 3.93
297 298 3.632145 CCGATTAACTTGCCAATTAGCCT 59.368 43.478 0.00 0.00 0.00 4.58
298 299 3.795488 GCCGATTAACTTGCCAATTAGCC 60.795 47.826 0.00 0.00 0.00 3.93
299 300 3.372060 GCCGATTAACTTGCCAATTAGC 58.628 45.455 0.00 0.00 0.00 3.09
300 301 3.964909 GGCCGATTAACTTGCCAATTAG 58.035 45.455 6.18 0.00 43.46 1.73
302 303 2.959507 GGCCGATTAACTTGCCAATT 57.040 45.000 6.18 0.00 43.46 2.32
306 307 2.959507 AAATGGCCGATTAACTTGCC 57.040 45.000 0.00 4.44 44.27 4.52
307 308 5.587289 TGATTAAATGGCCGATTAACTTGC 58.413 37.500 13.26 6.21 0.00 4.01
308 309 8.647143 AATTGATTAAATGGCCGATTAACTTG 57.353 30.769 13.26 0.00 0.00 3.16
312 313 9.619316 CGATTAATTGATTAAATGGCCGATTAA 57.381 29.630 13.33 13.33 36.02 1.40
313 314 8.240682 CCGATTAATTGATTAAATGGCCGATTA 58.759 33.333 4.10 0.00 36.02 1.75
314 315 7.040062 TCCGATTAATTGATTAAATGGCCGATT 60.040 33.333 4.10 0.00 36.02 3.34
315 316 6.432783 TCCGATTAATTGATTAAATGGCCGAT 59.567 34.615 4.10 0.00 36.02 4.18
316 317 5.765677 TCCGATTAATTGATTAAATGGCCGA 59.234 36.000 4.10 0.00 36.02 5.54
317 318 6.007936 TCCGATTAATTGATTAAATGGCCG 57.992 37.500 4.10 0.00 36.02 6.13
318 319 7.601856 TCATCCGATTAATTGATTAAATGGCC 58.398 34.615 4.10 0.00 36.02 5.36
319 320 9.643693 AATCATCCGATTAATTGATTAAATGGC 57.356 29.630 10.14 0.00 40.16 4.40
326 327 9.231297 ACCGATAAATCATCCGATTAATTGATT 57.769 29.630 4.10 5.86 41.12 2.57
327 328 8.792830 ACCGATAAATCATCCGATTAATTGAT 57.207 30.769 4.10 0.00 41.12 2.57
328 329 8.615878 AACCGATAAATCATCCGATTAATTGA 57.384 30.769 4.10 0.00 41.12 2.57
332 333 8.865978 CGATAAACCGATAAATCATCCGATTAA 58.134 33.333 0.00 0.00 41.12 1.40
333 334 7.490079 CCGATAAACCGATAAATCATCCGATTA 59.510 37.037 0.00 0.00 41.12 1.75
334 335 6.312918 CCGATAAACCGATAAATCATCCGATT 59.687 38.462 0.00 0.00 43.94 3.34
335 336 5.810587 CCGATAAACCGATAAATCATCCGAT 59.189 40.000 0.00 0.00 0.00 4.18
336 337 5.165676 CCGATAAACCGATAAATCATCCGA 58.834 41.667 0.00 0.00 0.00 4.55
337 338 4.201685 GCCGATAAACCGATAAATCATCCG 60.202 45.833 0.00 0.00 0.00 4.18
338 339 4.935808 AGCCGATAAACCGATAAATCATCC 59.064 41.667 0.00 0.00 0.00 3.51
339 340 6.812160 AGTAGCCGATAAACCGATAAATCATC 59.188 38.462 0.00 0.00 0.00 2.92
340 341 6.698380 AGTAGCCGATAAACCGATAAATCAT 58.302 36.000 0.00 0.00 0.00 2.45
341 342 6.092955 AGTAGCCGATAAACCGATAAATCA 57.907 37.500 0.00 0.00 0.00 2.57
342 343 6.154445 TGAGTAGCCGATAAACCGATAAATC 58.846 40.000 0.00 0.00 0.00 2.17
343 344 6.092955 TGAGTAGCCGATAAACCGATAAAT 57.907 37.500 0.00 0.00 0.00 1.40
344 345 5.068198 ACTGAGTAGCCGATAAACCGATAAA 59.932 40.000 0.00 0.00 0.00 1.40
345 346 4.581824 ACTGAGTAGCCGATAAACCGATAA 59.418 41.667 0.00 0.00 0.00 1.75
346 347 4.023450 CACTGAGTAGCCGATAAACCGATA 60.023 45.833 0.00 0.00 0.00 2.92
347 348 2.957006 ACTGAGTAGCCGATAAACCGAT 59.043 45.455 0.00 0.00 0.00 4.18
348 349 2.098607 CACTGAGTAGCCGATAAACCGA 59.901 50.000 0.00 0.00 0.00 4.69
349 350 2.098607 TCACTGAGTAGCCGATAAACCG 59.901 50.000 0.00 0.00 0.00 4.44
350 351 3.795623 TCACTGAGTAGCCGATAAACC 57.204 47.619 0.00 0.00 0.00 3.27
351 352 4.038162 AGGATCACTGAGTAGCCGATAAAC 59.962 45.833 0.00 0.00 0.00 2.01
352 353 4.215908 AGGATCACTGAGTAGCCGATAAA 58.784 43.478 0.00 0.00 0.00 1.40
353 354 3.833732 AGGATCACTGAGTAGCCGATAA 58.166 45.455 0.00 0.00 0.00 1.75
354 355 3.510531 AGGATCACTGAGTAGCCGATA 57.489 47.619 0.00 0.00 0.00 2.92
355 356 2.373335 AGGATCACTGAGTAGCCGAT 57.627 50.000 0.00 0.00 0.00 4.18
356 357 2.573369 GTAGGATCACTGAGTAGCCGA 58.427 52.381 0.00 0.00 0.00 5.54
357 358 1.264557 CGTAGGATCACTGAGTAGCCG 59.735 57.143 0.00 0.00 0.00 5.52
358 359 2.550606 CTCGTAGGATCACTGAGTAGCC 59.449 54.545 0.00 0.00 0.00 3.93
359 360 3.207778 ACTCGTAGGATCACTGAGTAGC 58.792 50.000 7.19 0.00 38.09 3.58
373 374 8.393671 ACTTACTGATTAATCCCTACTCGTAG 57.606 38.462 12.90 2.99 0.00 3.51
374 375 8.757982 AACTTACTGATTAATCCCTACTCGTA 57.242 34.615 12.90 1.33 0.00 3.43
375 376 7.657023 AACTTACTGATTAATCCCTACTCGT 57.343 36.000 12.90 0.00 0.00 4.18
380 381 9.609346 GCAGTTAAACTTACTGATTAATCCCTA 57.391 33.333 12.90 0.00 44.52 3.53
381 382 8.329502 AGCAGTTAAACTTACTGATTAATCCCT 58.670 33.333 12.90 0.53 44.52 4.20
382 383 8.507524 AGCAGTTAAACTTACTGATTAATCCC 57.492 34.615 12.90 0.00 44.52 3.85
389 390 8.038944 TCCGATTAAGCAGTTAAACTTACTGAT 58.961 33.333 7.15 0.00 44.52 2.90
390 391 7.330208 GTCCGATTAAGCAGTTAAACTTACTGA 59.670 37.037 7.15 0.00 44.52 3.41
391 392 7.453838 GTCCGATTAAGCAGTTAAACTTACTG 58.546 38.462 0.00 0.00 44.55 2.74
392 393 6.309737 CGTCCGATTAAGCAGTTAAACTTACT 59.690 38.462 0.00 0.00 31.81 2.24
393 394 6.308766 TCGTCCGATTAAGCAGTTAAACTTAC 59.691 38.462 0.00 0.00 31.81 2.34
394 395 6.389091 TCGTCCGATTAAGCAGTTAAACTTA 58.611 36.000 0.00 0.00 31.81 2.24
395 396 5.232463 TCGTCCGATTAAGCAGTTAAACTT 58.768 37.500 0.00 0.00 31.81 2.66
396 397 4.813027 TCGTCCGATTAAGCAGTTAAACT 58.187 39.130 0.00 0.00 31.81 2.66
397 398 5.520022 TTCGTCCGATTAAGCAGTTAAAC 57.480 39.130 0.00 0.00 31.81 2.01
398 399 6.592607 AGAATTCGTCCGATTAAGCAGTTAAA 59.407 34.615 0.00 0.00 31.81 1.52
399 400 6.103997 AGAATTCGTCCGATTAAGCAGTTAA 58.896 36.000 0.00 0.00 32.60 2.01
400 401 5.657474 AGAATTCGTCCGATTAAGCAGTTA 58.343 37.500 0.00 0.00 0.00 2.24
401 402 4.504858 AGAATTCGTCCGATTAAGCAGTT 58.495 39.130 0.00 0.00 0.00 3.16
402 403 4.124851 AGAATTCGTCCGATTAAGCAGT 57.875 40.909 0.00 0.00 0.00 4.40
403 404 4.566759 TCAAGAATTCGTCCGATTAAGCAG 59.433 41.667 0.00 0.00 0.00 4.24
404 405 4.500127 TCAAGAATTCGTCCGATTAAGCA 58.500 39.130 0.00 0.00 0.00 3.91
405 406 5.163893 TGTTCAAGAATTCGTCCGATTAAGC 60.164 40.000 0.00 0.00 0.00 3.09
406 407 6.403333 TGTTCAAGAATTCGTCCGATTAAG 57.597 37.500 0.00 0.00 0.00 1.85
407 408 6.183360 CCATGTTCAAGAATTCGTCCGATTAA 60.183 38.462 0.00 0.00 0.00 1.40
408 409 5.293324 CCATGTTCAAGAATTCGTCCGATTA 59.707 40.000 0.00 0.00 0.00 1.75
409 410 4.094887 CCATGTTCAAGAATTCGTCCGATT 59.905 41.667 0.00 0.00 0.00 3.34
410 411 3.623060 CCATGTTCAAGAATTCGTCCGAT 59.377 43.478 0.00 0.00 0.00 4.18
411 412 3.000041 CCATGTTCAAGAATTCGTCCGA 59.000 45.455 0.00 0.00 0.00 4.55
412 413 3.000041 TCCATGTTCAAGAATTCGTCCG 59.000 45.455 0.00 0.00 0.00 4.79
413 414 5.567138 AATCCATGTTCAAGAATTCGTCC 57.433 39.130 0.00 0.00 0.00 4.79
556 568 2.083774 TCACAAAACGCATCCATCCTC 58.916 47.619 0.00 0.00 0.00 3.71
650 666 1.739562 CTCGCTCACTGTTCCAGCC 60.740 63.158 0.00 0.00 34.37 4.85
651 667 1.005630 ACTCGCTCACTGTTCCAGC 60.006 57.895 0.00 0.00 34.37 4.85
652 668 0.668706 CCACTCGCTCACTGTTCCAG 60.669 60.000 0.00 0.00 37.52 3.86
653 669 1.367471 CCACTCGCTCACTGTTCCA 59.633 57.895 0.00 0.00 0.00 3.53
654 670 0.601558 TACCACTCGCTCACTGTTCC 59.398 55.000 0.00 0.00 0.00 3.62
655 671 1.269998 ACTACCACTCGCTCACTGTTC 59.730 52.381 0.00 0.00 0.00 3.18
656 672 1.000163 CACTACCACTCGCTCACTGTT 60.000 52.381 0.00 0.00 0.00 3.16
657 673 0.598562 CACTACCACTCGCTCACTGT 59.401 55.000 0.00 0.00 0.00 3.55
680 715 1.428869 CTCCCTTCCCCCACTATCAG 58.571 60.000 0.00 0.00 0.00 2.90
729 764 0.242286 GACAGCGAACAGAGCAGAGA 59.758 55.000 0.00 0.00 37.01 3.10
738 773 1.595109 CAGCCACAGACAGCGAACA 60.595 57.895 0.00 0.00 0.00 3.18
740 775 1.146041 AACAGCCACAGACAGCGAA 59.854 52.632 0.00 0.00 0.00 4.70
742 777 1.563435 CTCAACAGCCACAGACAGCG 61.563 60.000 0.00 0.00 0.00 5.18
761 796 0.249955 AGGAAGAAGCTCAGCTCAGC 59.750 55.000 0.00 0.00 38.25 4.26
865 905 0.035820 CGATCCGGGACCAAAGGAAA 60.036 55.000 0.00 0.00 37.62 3.13
1108 1161 3.073209 AGTTGAAGAAGGAAGGGAAGGAC 59.927 47.826 0.00 0.00 0.00 3.85
1132 1194 3.964688 TGTACATGTATGTAGGGTGGAGG 59.035 47.826 9.18 0.00 43.32 4.30
1157 1219 9.372189 CTATGTATCTATCCATCCATCCATGTA 57.628 37.037 0.00 0.00 0.00 2.29
1158 1220 8.069979 TCTATGTATCTATCCATCCATCCATGT 58.930 37.037 0.00 0.00 0.00 3.21
1159 1221 8.488308 TCTATGTATCTATCCATCCATCCATG 57.512 38.462 0.00 0.00 0.00 3.66
1161 1223 9.819754 CTATCTATGTATCTATCCATCCATCCA 57.180 37.037 0.00 0.00 0.00 3.41
1166 1228 9.474313 GGGATCTATCTATGTATCTATCCATCC 57.526 40.741 0.00 0.00 34.58 3.51
1179 1241 8.657387 TGTTCTAAGAAGGGGATCTATCTATG 57.343 38.462 0.00 0.00 0.00 2.23
1245 1310 9.696917 AAAACAAAGGAAGTAATCATGATTCAC 57.303 29.630 23.95 18.41 32.50 3.18
1312 1377 6.461110 ACACAATCCATGAATCAATCTTCC 57.539 37.500 0.00 0.00 0.00 3.46
1467 1548 0.404426 TCCTCACTTGGAGTCGGAGA 59.596 55.000 0.00 0.00 42.40 3.71
1507 1588 9.374838 AGCAATAGATTTGATTTGATTTGGTTC 57.625 29.630 0.00 0.00 0.00 3.62
1508 1589 9.158233 CAGCAATAGATTTGATTTGATTTGGTT 57.842 29.630 0.00 0.00 0.00 3.67
1509 1590 8.316214 ACAGCAATAGATTTGATTTGATTTGGT 58.684 29.630 0.00 0.00 0.00 3.67
1510 1591 8.712285 ACAGCAATAGATTTGATTTGATTTGG 57.288 30.769 0.00 0.00 0.00 3.28
1511 1592 9.361315 TGACAGCAATAGATTTGATTTGATTTG 57.639 29.630 0.00 0.00 0.00 2.32
1512 1593 9.362539 GTGACAGCAATAGATTTGATTTGATTT 57.637 29.630 0.00 0.00 0.00 2.17
1513 1594 8.525316 TGTGACAGCAATAGATTTGATTTGATT 58.475 29.630 0.00 0.00 0.00 2.57
1514 1595 8.058667 TGTGACAGCAATAGATTTGATTTGAT 57.941 30.769 0.00 0.00 0.00 2.57
1515 1596 7.451501 TGTGACAGCAATAGATTTGATTTGA 57.548 32.000 0.00 0.00 0.00 2.69
1527 1608 4.910195 AGAGGTTTCATGTGACAGCAATA 58.090 39.130 0.00 0.00 0.00 1.90
1726 1837 4.338682 AGGATAAGGCACGAGTTAGTAGTG 59.661 45.833 0.00 0.00 38.77 2.74
1933 2049 4.099419 ACACATACACACACAGACAGAGAA 59.901 41.667 0.00 0.00 0.00 2.87
1941 2057 3.620821 TGAACACACACATACACACACAG 59.379 43.478 0.00 0.00 0.00 3.66
2086 2202 3.940221 AGCTTGCTTTGCTGATAAGAGAG 59.060 43.478 0.00 0.00 39.56 3.20
2122 2238 1.467920 GAGGATGGGTTGCCTTCTTG 58.532 55.000 0.00 0.00 33.84 3.02
2164 2280 1.821753 CAAGTCATCGAGAGTGGGAGT 59.178 52.381 0.00 0.00 0.00 3.85
2328 2444 5.298197 AGCATAACATAGATACGAGACGG 57.702 43.478 0.00 0.00 0.00 4.79
2376 2492 4.439700 CCAAGCATAGTTCCAGCAAGAATG 60.440 45.833 0.00 0.00 0.00 2.67
2385 2501 1.305219 GCACGCCAAGCATAGTTCCA 61.305 55.000 0.00 0.00 0.00 3.53
2479 2595 4.449068 GTGACAGTACAAGTGAACTCATGG 59.551 45.833 0.00 0.00 0.00 3.66
2690 2806 3.697045 TCTCTCAGCTGGTTCTTAGTAGC 59.303 47.826 15.13 0.00 36.45 3.58
2766 2893 8.500773 GTTTTCGAATTAACACAAGTATCTCCA 58.499 33.333 0.00 0.00 0.00 3.86
2846 2973 7.724490 TCAGAGATAACCCGAATATCATCAT 57.276 36.000 0.00 0.00 33.17 2.45
3129 3259 5.818336 TGTTCTCAAATTGACTAAACCGTCA 59.182 36.000 0.00 0.00 41.82 4.35
3285 4907 2.802816 CAACAAGTAGCGAGAAAGCAGT 59.197 45.455 0.00 0.00 40.15 4.40
3295 4917 4.725556 TTTCTTACAGCAACAAGTAGCG 57.274 40.909 0.00 0.00 35.48 4.26
3342 4982 5.349817 GTCATCCCGCAGATCTATTAACATG 59.650 44.000 0.00 0.00 30.59 3.21
3469 5113 3.550639 GCAAGCAAGCAACAGAACATACA 60.551 43.478 0.00 0.00 0.00 2.29
3486 5130 7.098477 AGATGAGATCACTATCTTATGCAAGC 58.902 38.462 0.00 0.00 42.73 4.01
3611 5264 4.098807 GCCTTCTTCTTCACTACTAGGAGG 59.901 50.000 6.98 0.00 0.00 4.30
3668 5342 1.503542 GCCTTGATGTTCTGCACCG 59.496 57.895 0.00 0.00 0.00 4.94
3842 5516 3.254166 CGAGGCAATTATGATCCCTTTGG 59.746 47.826 0.00 0.00 0.00 3.28
3877 5551 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3878 5552 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
3879 5553 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
3880 5554 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3881 5555 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
3882 5556 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
3883 5557 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3884 5558 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
3885 5559 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
3886 5560 8.812147 TTATACAACAACAACAACAACAACAA 57.188 26.923 0.00 0.00 0.00 2.83
3887 5561 8.988064 ATTATACAACAACAACAACAACAACA 57.012 26.923 0.00 0.00 0.00 3.33
3896 5570 9.250624 GCCAAACTAAATTATACAACAACAACA 57.749 29.630 0.00 0.00 0.00 3.33
3897 5571 9.471084 AGCCAAACTAAATTATACAACAACAAC 57.529 29.630 0.00 0.00 0.00 3.32
3899 5573 9.469807 CAAGCCAAACTAAATTATACAACAACA 57.530 29.630 0.00 0.00 0.00 3.33
3900 5574 9.685828 TCAAGCCAAACTAAATTATACAACAAC 57.314 29.630 0.00 0.00 0.00 3.32
3994 5677 8.623903 CGTCCACAAAATACTACCTACTACATA 58.376 37.037 0.00 0.00 0.00 2.29
3995 5678 7.340232 TCGTCCACAAAATACTACCTACTACAT 59.660 37.037 0.00 0.00 0.00 2.29
3997 5680 7.088589 TCGTCCACAAAATACTACCTACTAC 57.911 40.000 0.00 0.00 0.00 2.73
3999 5682 6.379133 TCATCGTCCACAAAATACTACCTACT 59.621 38.462 0.00 0.00 0.00 2.57
4000 5683 6.567050 TCATCGTCCACAAAATACTACCTAC 58.433 40.000 0.00 0.00 0.00 3.18
4001 5684 6.778834 TCATCGTCCACAAAATACTACCTA 57.221 37.500 0.00 0.00 0.00 3.08
4002 5685 5.670792 TCATCGTCCACAAAATACTACCT 57.329 39.130 0.00 0.00 0.00 3.08
4003 5686 5.640357 TGTTCATCGTCCACAAAATACTACC 59.360 40.000 0.00 0.00 0.00 3.18
4006 5689 5.123820 CCATGTTCATCGTCCACAAAATACT 59.876 40.000 0.00 0.00 0.00 2.12
4007 5690 5.123186 TCCATGTTCATCGTCCACAAAATAC 59.877 40.000 0.00 0.00 0.00 1.89
4011 5694 3.073678 CTCCATGTTCATCGTCCACAAA 58.926 45.455 0.00 0.00 0.00 2.83
4013 5696 1.623311 ACTCCATGTTCATCGTCCACA 59.377 47.619 0.00 0.00 0.00 4.17
4014 5697 2.002586 CACTCCATGTTCATCGTCCAC 58.997 52.381 0.00 0.00 0.00 4.02
4015 5698 1.675714 GCACTCCATGTTCATCGTCCA 60.676 52.381 0.00 0.00 0.00 4.02
4016 5699 1.009829 GCACTCCATGTTCATCGTCC 58.990 55.000 0.00 0.00 0.00 4.79
4017 5700 1.929836 GAGCACTCCATGTTCATCGTC 59.070 52.381 0.00 0.00 38.38 4.20
4032 5715 5.283457 AGTACTAGGATTGGATTGAGCAC 57.717 43.478 0.00 0.00 0.00 4.40
4133 5818 8.844244 TGTGATTATTTTTCAAAACATTTGGGG 58.156 29.630 3.25 0.00 0.00 4.96
4153 5838 4.282957 AGTCAGTCAGTGATGAGTGTGATT 59.717 41.667 11.67 0.00 39.55 2.57
4176 5861 9.462174 CTTGTAATTTTGCTATTCAAACAGTCA 57.538 29.630 0.00 0.00 43.76 3.41
4205 5890 5.773680 CCCCGGAAGATTCTAGTATTACTCA 59.226 44.000 0.73 0.00 0.00 3.41
4218 5903 0.905357 CAGAGACACCCCGGAAGATT 59.095 55.000 0.73 0.00 0.00 2.40
4225 5910 1.258445 AAGGTAGCAGAGACACCCCG 61.258 60.000 0.00 0.00 32.43 5.73
4241 5926 6.710744 AGTCTGTACCAACTGAATTGTTAAGG 59.289 38.462 0.00 0.00 36.47 2.69
4267 5952 9.790344 CTAGTCTAGTCTAGTCTAGTCTAGTCT 57.210 40.741 28.74 26.91 43.37 3.24
4268 5953 9.784531 TCTAGTCTAGTCTAGTCTAGTCTAGTC 57.215 40.741 31.66 23.47 45.51 2.59
4269 5954 9.566432 GTCTAGTCTAGTCTAGTCTAGTCTAGT 57.434 40.741 31.66 18.46 45.51 2.57
4270 5955 9.790344 AGTCTAGTCTAGTCTAGTCTAGTCTAG 57.210 40.741 29.89 29.89 46.00 2.43
4271 5956 9.565090 CAGTCTAGTCTAGTCTAGTCTAGTCTA 57.435 40.741 26.77 20.65 41.87 2.59
4272 5957 7.504911 CCAGTCTAGTCTAGTCTAGTCTAGTCT 59.495 44.444 26.77 24.66 41.87 3.24
4273 5958 7.503566 TCCAGTCTAGTCTAGTCTAGTCTAGTC 59.496 44.444 26.77 23.47 41.87 2.59
4302 5991 2.039084 TCCACTCTGCTTTTTCTCCTCC 59.961 50.000 0.00 0.00 0.00 4.30
4309 5998 2.101415 GGTTGCTTCCACTCTGCTTTTT 59.899 45.455 0.00 0.00 0.00 1.94
4328 6017 1.145738 AGACACATCCTTTGCCTTGGT 59.854 47.619 0.00 0.00 0.00 3.67
4356 6045 1.366366 CACCAAACCGGACGACTCT 59.634 57.895 9.46 0.00 38.63 3.24
4678 6367 2.499685 GAGGTCTACGCCGCCAAT 59.500 61.111 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.