Multiple sequence alignment - TraesCS1A01G323600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G323600 chr1A 100.000 4852 0 0 1 4852 514134811 514139662 0.000000e+00 8961.0
1 TraesCS1A01G323600 chr1A 89.326 356 34 3 3980 4334 425711023 425710671 1.240000e-120 444.0
2 TraesCS1A01G323600 chr1A 97.030 101 3 0 4752 4852 354523971 354524071 2.320000e-38 171.0
3 TraesCS1A01G323600 chr1A 97.030 101 3 0 4752 4852 365966594 365966694 2.320000e-38 171.0
4 TraesCS1A01G323600 chr1A 97.030 101 3 0 4752 4852 372284433 372284333 2.320000e-38 171.0
5 TraesCS1A01G323600 chr1D 95.820 4474 133 17 282 4750 416841216 416845640 0.000000e+00 7177.0
6 TraesCS1A01G323600 chr1D 89.607 356 34 2 3980 4334 328875935 328875582 2.660000e-122 449.0
7 TraesCS1A01G323600 chr1D 88.757 169 9 3 6 165 416806968 416807135 1.070000e-46 198.0
8 TraesCS1A01G323600 chr1D 96.491 114 4 0 6 119 416805654 416805767 6.410000e-44 189.0
9 TraesCS1A01G323600 chr1B 94.890 3405 158 8 575 3978 563673000 563676389 0.000000e+00 5310.0
10 TraesCS1A01G323600 chr1B 90.521 422 33 5 4332 4751 563676385 563676801 7.100000e-153 551.0
11 TraesCS1A01G323600 chr1B 90.054 372 28 4 190 561 563672651 563673013 1.580000e-129 473.0
12 TraesCS1A01G323600 chr7B 81.214 1565 280 10 1025 2582 750172387 750173944 0.000000e+00 1249.0
13 TraesCS1A01G323600 chr7B 81.202 1564 279 13 1025 2582 750246464 750248018 0.000000e+00 1245.0
14 TraesCS1A01G323600 chr7B 78.264 1601 327 19 1001 2591 750322042 750320453 0.000000e+00 1009.0
15 TraesCS1A01G323600 chr7B 76.425 1561 334 30 1046 2593 750122026 750123565 0.000000e+00 813.0
16 TraesCS1A01G323600 chr7B 74.508 863 182 28 2845 3682 750319919 750319070 1.670000e-89 340.0
17 TraesCS1A01G323600 chr7A 77.181 1582 344 15 1001 2575 733274066 733275637 0.000000e+00 905.0
18 TraesCS1A01G323600 chr7A 80.783 869 159 7 1718 2582 732922568 732921704 0.000000e+00 673.0
19 TraesCS1A01G323600 chr7A 76.357 774 160 15 1025 1794 732923318 732922564 1.270000e-105 394.0
20 TraesCS1A01G323600 chr7A 98.039 102 2 0 4751 4852 220632730 220632629 1.390000e-40 178.0
21 TraesCS1A01G323600 chr7A 97.030 101 3 0 4752 4852 213819095 213819195 2.320000e-38 171.0
22 TraesCS1A01G323600 chr7A 97.030 101 3 0 4752 4852 444043263 444043363 2.320000e-38 171.0
23 TraesCS1A01G323600 chr7D 81.404 812 147 4 1775 2584 617932201 617933010 0.000000e+00 660.0
24 TraesCS1A01G323600 chr4D 91.854 356 28 1 3979 4334 310115918 310115564 3.370000e-136 496.0
25 TraesCS1A01G323600 chr4D 86.607 112 7 6 60 164 95284292 95284182 3.070000e-22 117.0
26 TraesCS1A01G323600 chr4D 86.087 115 6 8 60 165 95283171 95283058 1.100000e-21 115.0
27 TraesCS1A01G323600 chr2D 91.389 360 26 3 3979 4334 540321681 540321323 5.640000e-134 488.0
28 TraesCS1A01G323600 chr2B 89.972 359 34 2 3978 4334 800132634 800132992 3.420000e-126 462.0
29 TraesCS1A01G323600 chr2B 89.607 356 35 2 3980 4334 772373384 772373030 7.410000e-123 451.0
30 TraesCS1A01G323600 chr2B 89.326 356 38 0 3979 4334 587341153 587341508 9.580000e-122 448.0
31 TraesCS1A01G323600 chr6B 88.000 375 35 7 3979 4344 652523761 652523388 7.460000e-118 435.0
32 TraesCS1A01G323600 chr6B 86.842 114 5 7 60 164 151211872 151211760 8.530000e-23 119.0
33 TraesCS1A01G323600 chr6B 85.965 114 6 7 60 164 151210473 151210361 3.970000e-21 113.0
34 TraesCS1A01G323600 chr6B 97.368 38 1 0 299 336 646278088 646278125 1.130000e-06 65.8
35 TraesCS1A01G323600 chr6A 97.030 101 3 0 4752 4852 44872952 44873052 2.320000e-38 171.0
36 TraesCS1A01G323600 chr5A 97.030 101 3 0 4752 4852 162405758 162405658 2.320000e-38 171.0
37 TraesCS1A01G323600 chr3A 97.030 101 3 0 4752 4852 454209955 454209855 2.320000e-38 171.0
38 TraesCS1A01G323600 chr5D 85.470 117 7 8 57 164 484908958 484909073 3.970000e-21 113.0
39 TraesCS1A01G323600 chr3D 85.965 114 6 8 60 164 12755022 12754910 3.970000e-21 113.0
40 TraesCS1A01G323600 chr5B 84.685 111 7 8 63 164 688012683 688012574 8.590000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G323600 chr1A 514134811 514139662 4851 False 8961.000000 8961 100.000000 1 4852 1 chr1A.!!$F3 4851
1 TraesCS1A01G323600 chr1D 416841216 416845640 4424 False 7177.000000 7177 95.820000 282 4750 1 chr1D.!!$F1 4468
2 TraesCS1A01G323600 chr1B 563672651 563676801 4150 False 2111.333333 5310 91.821667 190 4751 3 chr1B.!!$F1 4561
3 TraesCS1A01G323600 chr7B 750172387 750173944 1557 False 1249.000000 1249 81.214000 1025 2582 1 chr7B.!!$F2 1557
4 TraesCS1A01G323600 chr7B 750246464 750248018 1554 False 1245.000000 1245 81.202000 1025 2582 1 chr7B.!!$F3 1557
5 TraesCS1A01G323600 chr7B 750122026 750123565 1539 False 813.000000 813 76.425000 1046 2593 1 chr7B.!!$F1 1547
6 TraesCS1A01G323600 chr7B 750319070 750322042 2972 True 674.500000 1009 76.386000 1001 3682 2 chr7B.!!$R1 2681
7 TraesCS1A01G323600 chr7A 733274066 733275637 1571 False 905.000000 905 77.181000 1001 2575 1 chr7A.!!$F3 1574
8 TraesCS1A01G323600 chr7A 732921704 732923318 1614 True 533.500000 673 78.570000 1025 2582 2 chr7A.!!$R2 1557
9 TraesCS1A01G323600 chr7D 617932201 617933010 809 False 660.000000 660 81.404000 1775 2584 1 chr7D.!!$F1 809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.109153 CCTAGCTACATGCATGCCCA 59.891 55.000 26.53 11.02 45.94 5.36 F
92 93 0.240945 CCAACAAACAGCCCACGATC 59.759 55.000 0.00 0.00 0.00 3.69 F
93 94 0.240945 CAACAAACAGCCCACGATCC 59.759 55.000 0.00 0.00 0.00 3.36 F
142 143 0.249447 CCACACACTCGAGTCTTGCA 60.249 55.000 16.96 0.00 0.00 4.08 F
1255 1258 0.381801 CACCGATTACATGGGCAAGC 59.618 55.000 0.00 0.00 0.00 4.01 F
1434 1443 3.703420 AGACAGTAGTGTTGTTGACGAC 58.297 45.455 4.32 0.00 36.88 4.34 F
3249 3643 2.094762 GCGATTAGCCATATCCCGTT 57.905 50.000 0.00 0.00 40.81 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1064 1067 0.462759 GGTGACTCCACATAGCAGGC 60.463 60.000 0.00 0.00 44.93 4.85 R
1199 1202 0.470833 AGCCTCATATGAGACGGCCT 60.471 55.000 30.40 15.97 44.74 5.19 R
1237 1240 1.095228 CGCTTGCCCATGTAATCGGT 61.095 55.000 0.00 0.00 0.00 4.69 R
1281 1284 1.133976 GCATACCTTGAGATGGCACCT 60.134 52.381 0.00 0.00 0.00 4.00 R
2827 3206 1.346395 AGCTGGTTGGACAACGATACA 59.654 47.619 8.89 1.32 42.02 2.29 R
3415 3809 0.679002 CCAGCACCACAAGAGATGGG 60.679 60.000 0.00 0.00 41.97 4.00 R
4751 5148 0.107410 AAACTGAACGCACAGGGTGA 60.107 50.000 12.73 0.00 41.59 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.776173 TGCTCTAACTGATTCCTAGCTAC 57.224 43.478 0.00 0.00 0.00 3.58
24 25 5.201243 TGCTCTAACTGATTCCTAGCTACA 58.799 41.667 0.00 0.00 0.00 2.74
25 26 5.835819 TGCTCTAACTGATTCCTAGCTACAT 59.164 40.000 0.00 0.00 0.00 2.29
26 27 6.155827 GCTCTAACTGATTCCTAGCTACATG 58.844 44.000 0.00 0.00 0.00 3.21
27 28 6.090483 TCTAACTGATTCCTAGCTACATGC 57.910 41.667 0.00 0.00 43.29 4.06
28 29 4.760530 AACTGATTCCTAGCTACATGCA 57.239 40.909 0.00 0.00 45.94 3.96
29 30 4.970860 ACTGATTCCTAGCTACATGCAT 57.029 40.909 0.00 0.00 45.94 3.96
30 31 4.639334 ACTGATTCCTAGCTACATGCATG 58.361 43.478 25.09 25.09 45.94 4.06
31 32 3.405831 TGATTCCTAGCTACATGCATGC 58.594 45.455 26.53 11.82 45.94 4.06
32 33 2.260844 TTCCTAGCTACATGCATGCC 57.739 50.000 26.53 14.67 45.94 4.40
33 34 0.397941 TCCTAGCTACATGCATGCCC 59.602 55.000 26.53 14.32 45.94 5.36
34 35 0.109153 CCTAGCTACATGCATGCCCA 59.891 55.000 26.53 11.02 45.94 5.36
35 36 1.233019 CTAGCTACATGCATGCCCAC 58.767 55.000 26.53 13.35 45.94 4.61
36 37 0.545646 TAGCTACATGCATGCCCACA 59.454 50.000 26.53 6.69 45.94 4.17
37 38 0.323633 AGCTACATGCATGCCCACAA 60.324 50.000 26.53 4.63 45.94 3.33
38 39 0.531657 GCTACATGCATGCCCACAAA 59.468 50.000 26.53 0.00 42.31 2.83
39 40 1.736696 GCTACATGCATGCCCACAAAC 60.737 52.381 26.53 4.15 42.31 2.93
40 41 0.894141 TACATGCATGCCCACAAACC 59.106 50.000 26.53 0.00 0.00 3.27
41 42 1.120184 ACATGCATGCCCACAAACCA 61.120 50.000 26.53 0.00 0.00 3.67
42 43 0.390603 CATGCATGCCCACAAACCAG 60.391 55.000 14.93 0.00 0.00 4.00
43 44 2.047939 GCATGCCCACAAACCAGC 60.048 61.111 6.36 0.00 0.00 4.85
44 45 2.658422 CATGCCCACAAACCAGCC 59.342 61.111 0.00 0.00 0.00 4.85
45 46 2.604382 ATGCCCACAAACCAGCCC 60.604 61.111 0.00 0.00 0.00 5.19
46 47 3.164610 ATGCCCACAAACCAGCCCT 62.165 57.895 0.00 0.00 0.00 5.19
47 48 2.524148 GCCCACAAACCAGCCCTT 60.524 61.111 0.00 0.00 0.00 3.95
48 49 2.871253 GCCCACAAACCAGCCCTTG 61.871 63.158 0.00 0.00 0.00 3.61
49 50 2.736531 CCACAAACCAGCCCTTGC 59.263 61.111 0.00 0.00 37.95 4.01
50 51 2.336088 CACAAACCAGCCCTTGCG 59.664 61.111 0.00 0.00 44.33 4.85
51 52 3.605664 ACAAACCAGCCCTTGCGC 61.606 61.111 0.00 0.00 44.33 6.09
52 53 3.604667 CAAACCAGCCCTTGCGCA 61.605 61.111 5.66 5.66 44.33 6.09
53 54 2.837291 AAACCAGCCCTTGCGCAA 60.837 55.556 23.48 23.48 44.33 4.85
54 55 2.209315 AAACCAGCCCTTGCGCAAT 61.209 52.632 25.26 5.57 44.33 3.56
55 56 2.158561 AAACCAGCCCTTGCGCAATC 62.159 55.000 25.26 15.44 44.33 2.67
56 57 3.063704 CCAGCCCTTGCGCAATCA 61.064 61.111 25.26 0.56 44.33 2.57
57 58 2.638354 CCAGCCCTTGCGCAATCAA 61.638 57.895 25.26 0.10 44.33 2.57
58 59 1.514087 CAGCCCTTGCGCAATCAAT 59.486 52.632 25.26 7.78 44.33 2.57
59 60 0.740149 CAGCCCTTGCGCAATCAATA 59.260 50.000 25.26 0.00 44.33 1.90
60 61 1.134753 CAGCCCTTGCGCAATCAATAA 59.865 47.619 25.26 0.00 44.33 1.40
61 62 1.134946 AGCCCTTGCGCAATCAATAAC 59.865 47.619 25.26 9.10 44.33 1.89
62 63 1.802508 GCCCTTGCGCAATCAATAACC 60.803 52.381 25.26 2.83 0.00 2.85
63 64 1.476085 CCCTTGCGCAATCAATAACCA 59.524 47.619 25.26 0.00 0.00 3.67
64 65 2.101249 CCCTTGCGCAATCAATAACCAT 59.899 45.455 25.26 0.00 0.00 3.55
65 66 3.117794 CCTTGCGCAATCAATAACCATG 58.882 45.455 25.26 6.96 0.00 3.66
66 67 2.206815 TGCGCAATCAATAACCATGC 57.793 45.000 8.16 0.00 0.00 4.06
67 68 1.475682 TGCGCAATCAATAACCATGCA 59.524 42.857 8.16 0.00 36.84 3.96
68 69 2.101082 TGCGCAATCAATAACCATGCAT 59.899 40.909 8.16 0.00 36.84 3.96
69 70 2.473609 GCGCAATCAATAACCATGCATG 59.526 45.455 20.19 20.19 36.84 4.06
70 71 2.473609 CGCAATCAATAACCATGCATGC 59.526 45.455 21.69 11.82 36.84 4.06
71 72 3.459145 GCAATCAATAACCATGCATGCA 58.541 40.909 25.04 25.04 37.00 3.96
72 73 3.493129 GCAATCAATAACCATGCATGCAG 59.507 43.478 26.69 15.79 37.00 4.41
73 74 2.875087 TCAATAACCATGCATGCAGC 57.125 45.000 26.69 0.00 45.96 5.25
74 75 1.409790 TCAATAACCATGCATGCAGCC 59.590 47.619 26.69 0.00 44.83 4.85
75 76 1.137282 CAATAACCATGCATGCAGCCA 59.863 47.619 26.69 9.44 44.83 4.75
76 77 1.487300 ATAACCATGCATGCAGCCAA 58.513 45.000 26.69 10.52 44.83 4.52
77 78 0.531657 TAACCATGCATGCAGCCAAC 59.468 50.000 26.69 0.00 44.83 3.77
78 79 1.473497 AACCATGCATGCAGCCAACA 61.473 50.000 26.69 0.00 44.83 3.33
79 80 1.293818 CCATGCATGCAGCCAACAA 59.706 52.632 26.69 0.00 44.83 2.83
80 81 0.320858 CCATGCATGCAGCCAACAAA 60.321 50.000 26.69 0.00 44.83 2.83
81 82 0.793861 CATGCATGCAGCCAACAAAC 59.206 50.000 26.69 0.00 44.83 2.93
82 83 0.393448 ATGCATGCAGCCAACAAACA 59.607 45.000 26.69 0.00 44.83 2.83
83 84 0.249531 TGCATGCAGCCAACAAACAG 60.250 50.000 18.46 0.00 44.83 3.16
84 85 1.562575 GCATGCAGCCAACAAACAGC 61.563 55.000 14.21 0.00 37.23 4.40
85 86 0.947180 CATGCAGCCAACAAACAGCC 60.947 55.000 0.00 0.00 0.00 4.85
86 87 2.029518 GCAGCCAACAAACAGCCC 59.970 61.111 0.00 0.00 0.00 5.19
87 88 2.795110 GCAGCCAACAAACAGCCCA 61.795 57.895 0.00 0.00 0.00 5.36
88 89 1.067916 CAGCCAACAAACAGCCCAC 59.932 57.895 0.00 0.00 0.00 4.61
89 90 2.027460 GCCAACAAACAGCCCACG 59.973 61.111 0.00 0.00 0.00 4.94
90 91 2.485795 GCCAACAAACAGCCCACGA 61.486 57.895 0.00 0.00 0.00 4.35
91 92 1.805428 GCCAACAAACAGCCCACGAT 61.805 55.000 0.00 0.00 0.00 3.73
92 93 0.240945 CCAACAAACAGCCCACGATC 59.759 55.000 0.00 0.00 0.00 3.69
93 94 0.240945 CAACAAACAGCCCACGATCC 59.759 55.000 0.00 0.00 0.00 3.36
94 95 1.234615 AACAAACAGCCCACGATCCG 61.235 55.000 0.00 0.00 0.00 4.18
95 96 2.046314 AAACAGCCCACGATCCGG 60.046 61.111 0.00 0.00 0.00 5.14
96 97 4.778143 AACAGCCCACGATCCGGC 62.778 66.667 0.00 5.20 46.09 6.13
101 102 4.473520 CCCACGATCCGGCTGCTT 62.474 66.667 0.00 0.00 0.00 3.91
102 103 2.892425 CCACGATCCGGCTGCTTC 60.892 66.667 0.00 0.00 0.00 3.86
103 104 3.257561 CACGATCCGGCTGCTTCG 61.258 66.667 12.23 12.23 37.60 3.79
134 135 4.314440 GCCAGGCCACACACTCGA 62.314 66.667 5.01 0.00 0.00 4.04
135 136 2.047844 CCAGGCCACACACTCGAG 60.048 66.667 11.84 11.84 0.00 4.04
136 137 2.737180 CAGGCCACACACTCGAGT 59.263 61.111 13.58 13.58 0.00 4.18
137 138 1.373497 CAGGCCACACACTCGAGTC 60.373 63.158 16.96 2.79 0.00 3.36
138 139 1.531840 AGGCCACACACTCGAGTCT 60.532 57.895 16.96 0.00 0.00 3.24
139 140 1.115930 AGGCCACACACTCGAGTCTT 61.116 55.000 16.96 2.21 0.00 3.01
140 141 0.946221 GGCCACACACTCGAGTCTTG 60.946 60.000 16.96 17.75 0.00 3.02
141 142 1.560860 GCCACACACTCGAGTCTTGC 61.561 60.000 16.96 10.46 0.00 4.01
142 143 0.249447 CCACACACTCGAGTCTTGCA 60.249 55.000 16.96 0.00 0.00 4.08
143 144 1.606480 CCACACACTCGAGTCTTGCAT 60.606 52.381 16.96 0.00 0.00 3.96
144 145 1.458445 CACACACTCGAGTCTTGCATG 59.542 52.381 16.96 9.63 0.00 4.06
145 146 1.069204 ACACACTCGAGTCTTGCATGT 59.931 47.619 16.96 10.26 0.00 3.21
146 147 1.723542 CACACTCGAGTCTTGCATGTC 59.276 52.381 16.96 0.00 0.00 3.06
147 148 1.341209 ACACTCGAGTCTTGCATGTCA 59.659 47.619 16.96 0.00 0.00 3.58
148 149 1.991264 CACTCGAGTCTTGCATGTCAG 59.009 52.381 16.96 0.00 0.00 3.51
149 150 1.067283 ACTCGAGTCTTGCATGTCAGG 60.067 52.381 13.58 0.00 0.00 3.86
150 151 1.203287 CTCGAGTCTTGCATGTCAGGA 59.797 52.381 3.62 0.00 0.00 3.86
151 152 1.618343 TCGAGTCTTGCATGTCAGGAA 59.382 47.619 0.00 0.00 32.26 3.36
152 153 2.234661 TCGAGTCTTGCATGTCAGGAAT 59.765 45.455 0.00 0.00 32.26 3.01
153 154 3.005554 CGAGTCTTGCATGTCAGGAATT 58.994 45.455 0.00 0.00 32.26 2.17
154 155 4.081697 TCGAGTCTTGCATGTCAGGAATTA 60.082 41.667 0.00 0.00 32.26 1.40
155 156 4.813161 CGAGTCTTGCATGTCAGGAATTAT 59.187 41.667 0.00 0.00 32.26 1.28
156 157 5.050499 CGAGTCTTGCATGTCAGGAATTATC 60.050 44.000 0.00 0.00 32.26 1.75
157 158 5.999044 AGTCTTGCATGTCAGGAATTATCT 58.001 37.500 0.00 0.00 32.26 1.98
158 159 6.054295 AGTCTTGCATGTCAGGAATTATCTC 58.946 40.000 0.00 0.00 32.26 2.75
159 160 6.054295 GTCTTGCATGTCAGGAATTATCTCT 58.946 40.000 0.00 0.00 32.26 3.10
160 161 7.070447 AGTCTTGCATGTCAGGAATTATCTCTA 59.930 37.037 0.00 0.00 32.26 2.43
161 162 7.712639 GTCTTGCATGTCAGGAATTATCTCTAA 59.287 37.037 0.00 0.00 32.26 2.10
162 163 7.712639 TCTTGCATGTCAGGAATTATCTCTAAC 59.287 37.037 0.00 0.00 0.00 2.34
163 164 6.888105 TGCATGTCAGGAATTATCTCTAACA 58.112 36.000 0.00 0.00 0.00 2.41
164 165 7.512130 TGCATGTCAGGAATTATCTCTAACAT 58.488 34.615 0.00 0.00 0.00 2.71
165 166 7.994911 TGCATGTCAGGAATTATCTCTAACATT 59.005 33.333 0.00 0.00 0.00 2.71
166 167 8.502387 GCATGTCAGGAATTATCTCTAACATTC 58.498 37.037 0.00 0.00 0.00 2.67
167 168 9.775854 CATGTCAGGAATTATCTCTAACATTCT 57.224 33.333 0.00 0.00 0.00 2.40
168 169 9.995003 ATGTCAGGAATTATCTCTAACATTCTC 57.005 33.333 0.00 0.00 0.00 2.87
169 170 8.981659 TGTCAGGAATTATCTCTAACATTCTCA 58.018 33.333 0.00 0.00 0.00 3.27
170 171 9.995003 GTCAGGAATTATCTCTAACATTCTCAT 57.005 33.333 0.00 0.00 0.00 2.90
179 180 6.749139 TCTCTAACATTCTCATTATGGGACG 58.251 40.000 0.00 0.00 0.00 4.79
180 181 5.853936 TCTAACATTCTCATTATGGGACGG 58.146 41.667 0.00 0.00 0.00 4.79
181 182 4.771114 AACATTCTCATTATGGGACGGA 57.229 40.909 0.00 0.00 0.00 4.69
182 183 4.342862 ACATTCTCATTATGGGACGGAG 57.657 45.455 0.00 0.00 0.00 4.63
183 184 3.071602 ACATTCTCATTATGGGACGGAGG 59.928 47.826 0.00 0.00 0.00 4.30
184 185 1.717032 TCTCATTATGGGACGGAGGG 58.283 55.000 0.00 0.00 0.00 4.30
185 186 1.219469 TCTCATTATGGGACGGAGGGA 59.781 52.381 0.00 0.00 0.00 4.20
186 187 1.620819 CTCATTATGGGACGGAGGGAG 59.379 57.143 0.00 0.00 0.00 4.30
187 188 1.062428 TCATTATGGGACGGAGGGAGT 60.062 52.381 0.00 0.00 0.00 3.85
188 189 1.768870 CATTATGGGACGGAGGGAGTT 59.231 52.381 0.00 0.00 0.00 3.01
189 190 1.492764 TTATGGGACGGAGGGAGTTC 58.507 55.000 0.00 0.00 0.00 3.01
190 191 0.398098 TATGGGACGGAGGGAGTTCC 60.398 60.000 0.00 0.00 37.77 3.62
211 212 7.860872 AGTTCCTTTTTCGTAGCTGTAATTTTG 59.139 33.333 0.00 0.00 0.00 2.44
221 222 7.755822 TCGTAGCTGTAATTTTGTTTTGTTTGT 59.244 29.630 0.00 0.00 0.00 2.83
252 253 5.630680 GTCTACGGAAGTTATTTTGTCGTGA 59.369 40.000 0.00 0.00 46.40 4.35
260 261 7.486870 GGAAGTTATTTTGTCGTGAAACTTTGT 59.513 33.333 0.00 0.00 37.31 2.83
261 262 9.493206 GAAGTTATTTTGTCGTGAAACTTTGTA 57.507 29.630 0.00 0.00 37.31 2.41
262 263 8.831000 AGTTATTTTGTCGTGAAACTTTGTAC 57.169 30.769 0.00 0.00 31.75 2.90
297 298 7.791949 ACAACATTAAAACCATATTTGTTGCG 58.208 30.769 11.55 0.00 38.01 4.85
368 369 1.277842 TGCGTGTAGACCCATGTTCAT 59.722 47.619 0.00 0.00 0.00 2.57
479 480 1.506493 CTCGCTGCATCCCTATGAAC 58.494 55.000 0.00 0.00 34.84 3.18
485 486 1.138859 TGCATCCCTATGAACGAGTGG 59.861 52.381 0.00 0.00 34.84 4.00
538 539 3.558006 CACGGTCTAAAATGTGTGTGTGA 59.442 43.478 0.00 0.00 0.00 3.58
540 541 4.055360 CGGTCTAAAATGTGTGTGTGAGA 58.945 43.478 0.00 0.00 0.00 3.27
560 561 2.047151 GAGAGAGAGAGAGCACGGCG 62.047 65.000 4.80 4.80 0.00 6.46
623 624 1.614413 GAACTCTGTGGGACGACTCTT 59.386 52.381 0.00 0.00 0.00 2.85
783 784 2.512896 GCCAGGTCCATAGGCCAG 59.487 66.667 5.01 0.00 42.58 4.85
926 927 9.874215 TTTACTAATACTGACATCGATTCTACG 57.126 33.333 0.00 0.00 0.00 3.51
1023 1026 1.203994 GCCGAGTCTACTGTTAAGGCA 59.796 52.381 0.00 0.00 42.57 4.75
1062 1065 1.371183 CCTTGCCGTTCAGGAGACA 59.629 57.895 0.00 0.00 45.00 3.41
1064 1067 1.151668 CTTGCCGTTCAGGAGACAAG 58.848 55.000 0.00 0.00 45.00 3.16
1092 1095 1.843851 TGTGGAGTCACCCTTGAAGTT 59.156 47.619 0.00 0.00 42.98 2.66
1113 1116 3.225104 TGAGTGCCTGAAAAATGAGCTT 58.775 40.909 0.00 0.00 0.00 3.74
1199 1202 0.842030 ACCTGGGTCAGCCAGATCAA 60.842 55.000 25.27 0.00 37.47 2.57
1237 1240 2.159184 GCTGAGAATGTCATCGAGGTCA 60.159 50.000 0.00 0.00 33.51 4.02
1255 1258 0.381801 CACCGATTACATGGGCAAGC 59.618 55.000 0.00 0.00 0.00 4.01
1432 1441 6.578020 TTTTAGACAGTAGTGTTGTTGACG 57.422 37.500 4.32 0.00 36.88 4.35
1433 1442 5.503662 TTAGACAGTAGTGTTGTTGACGA 57.496 39.130 4.32 0.00 36.88 4.20
1434 1443 3.703420 AGACAGTAGTGTTGTTGACGAC 58.297 45.455 4.32 0.00 36.88 4.34
1530 1539 4.922206 TGGTTGGCTTTGAAGATGAGTAT 58.078 39.130 0.00 0.00 0.00 2.12
1581 1596 7.680730 ACATAGACAAGGATCTTAGTGTTGTT 58.319 34.615 0.00 0.00 31.57 2.83
1817 1904 4.521146 ACCCATGACTTTCTCTTGCATAG 58.479 43.478 0.00 0.00 0.00 2.23
2807 3186 7.042725 GCATATCTAATTCAGCACGAACACTTA 60.043 37.037 0.00 0.00 36.12 2.24
2833 3212 8.703604 TTGTCTTTAGAATTCCTTCTGTATCG 57.296 34.615 0.65 0.00 41.83 2.92
2836 3215 8.596380 GTCTTTAGAATTCCTTCTGTATCGTTG 58.404 37.037 0.65 0.00 41.83 4.10
2899 3278 7.459795 AGATTCAAGTCTGGAAAATTTCTCC 57.540 36.000 5.65 10.66 0.00 3.71
2933 3312 5.433526 GTGGGTGCATTTACCTAAGATACA 58.566 41.667 0.00 0.00 40.66 2.29
3212 3606 4.540359 TTTTTGGGCCAGATGAATCAAG 57.460 40.909 6.23 0.00 0.00 3.02
3249 3643 2.094762 GCGATTAGCCATATCCCGTT 57.905 50.000 0.00 0.00 40.81 4.44
3403 3797 2.684374 TGAACAAGATCCGATGCCAATG 59.316 45.455 0.00 0.00 0.00 2.82
3436 3830 1.271543 CCATCTCTTGTGGTGCTGGAA 60.272 52.381 0.00 0.00 29.26 3.53
3487 3881 0.600057 GCTCTGCCAAAGGGTTTCAG 59.400 55.000 0.00 0.00 36.17 3.02
3562 3956 2.044946 GGGTCGATGCCAAGGCTT 60.045 61.111 12.96 5.86 42.51 4.35
3592 3986 0.674581 CACTTCGGAGATGCAGGCAA 60.675 55.000 0.00 0.00 35.04 4.52
3687 4081 8.200792 GCCTCAGATTACCGAAGATGATAATAT 58.799 37.037 0.00 0.00 0.00 1.28
3706 4100 9.713740 GATAATATATTGTATGAGCTGCAAAGC 57.286 33.333 8.28 0.00 32.93 3.51
3788 4182 8.783093 TCAATTATTGTTTATTAGCTGGATCGG 58.217 33.333 4.77 0.00 0.00 4.18
3795 4189 3.838244 ATTAGCTGGATCGGCTTAACA 57.162 42.857 15.24 0.00 44.48 2.41
3800 4194 0.179111 TGGATCGGCTTAACAGCTCG 60.179 55.000 0.00 0.00 46.44 5.03
3817 4211 2.224079 GCTCGTTGTGCTCAATTTCTCA 59.776 45.455 4.26 0.00 35.92 3.27
3866 4261 0.041576 CGTGAGCCATGCATGATTCG 60.042 55.000 28.31 18.56 0.00 3.34
3889 4284 4.744570 TCGCAAGATCTTTGACTACGAAT 58.255 39.130 4.86 0.00 45.01 3.34
3936 4331 3.820467 CCAAGGCACTCATTACTTCACAA 59.180 43.478 0.00 0.00 38.49 3.33
3998 4393 2.243221 ACCCCAGAATTAGCTGAAGCAT 59.757 45.455 4.90 0.00 45.16 3.79
4044 4439 5.248640 TCTCACCTGTGATGAAGGATTTTC 58.751 41.667 0.00 0.00 39.13 2.29
4099 4494 5.774690 AGTTATCCAAAGAACCAATGCTTCA 59.225 36.000 0.00 0.00 0.00 3.02
4104 4499 1.981256 AGAACCAATGCTTCAACGGT 58.019 45.000 0.00 0.00 0.00 4.83
4105 4500 2.306847 AGAACCAATGCTTCAACGGTT 58.693 42.857 0.00 0.00 42.56 4.44
4106 4501 2.034558 AGAACCAATGCTTCAACGGTTG 59.965 45.455 14.62 14.62 40.01 3.77
4107 4502 1.686355 ACCAATGCTTCAACGGTTGA 58.314 45.000 19.07 19.07 38.04 3.18
4108 4503 2.238521 ACCAATGCTTCAACGGTTGAT 58.761 42.857 22.97 6.64 39.84 2.57
4109 4504 2.228822 ACCAATGCTTCAACGGTTGATC 59.771 45.455 22.97 17.47 39.84 2.92
4110 4505 2.508867 CAATGCTTCAACGGTTGATCG 58.491 47.619 22.97 17.42 39.84 3.69
4111 4506 0.447801 ATGCTTCAACGGTTGATCGC 59.552 50.000 25.88 25.88 39.84 4.58
4112 4507 0.602638 TGCTTCAACGGTTGATCGCT 60.603 50.000 29.26 0.00 39.84 4.93
4113 4508 0.095417 GCTTCAACGGTTGATCGCTC 59.905 55.000 22.97 8.12 39.84 5.03
4114 4509 0.366871 CTTCAACGGTTGATCGCTCG 59.633 55.000 22.97 5.64 39.84 5.03
4115 4510 1.623081 TTCAACGGTTGATCGCTCGC 61.623 55.000 22.97 0.00 39.84 5.03
4116 4511 2.094659 CAACGGTTGATCGCTCGCT 61.095 57.895 15.66 0.00 0.00 4.93
4117 4512 2.094659 AACGGTTGATCGCTCGCTG 61.095 57.895 0.00 0.00 0.00 5.18
4118 4513 2.202610 CGGTTGATCGCTCGCTGA 60.203 61.111 0.00 0.00 0.00 4.26
4119 4514 1.589993 CGGTTGATCGCTCGCTGAT 60.590 57.895 0.00 0.00 0.00 2.90
4120 4515 1.815212 CGGTTGATCGCTCGCTGATG 61.815 60.000 2.04 0.00 0.00 3.07
4121 4516 1.493950 GGTTGATCGCTCGCTGATGG 61.494 60.000 2.04 0.00 0.00 3.51
4136 4531 2.935348 ATGGGGCTCATCACTGCTA 58.065 52.632 0.00 0.00 0.00 3.49
4141 4536 3.244665 TGGGGCTCATCACTGCTAATATG 60.245 47.826 0.00 0.00 0.00 1.78
4154 4549 2.808543 GCTAATATGAAGGAGTTGGCGG 59.191 50.000 0.00 0.00 0.00 6.13
4162 4557 3.119096 GAGTTGGCGGCGGTCTTC 61.119 66.667 9.78 0.00 0.00 2.87
4165 4560 3.621805 TTGGCGGCGGTCTTCTCA 61.622 61.111 9.78 0.00 0.00 3.27
4238 4633 4.465886 TCTAGCTAGATCTTGTGAGTCCC 58.534 47.826 19.72 0.00 0.00 4.46
4247 4642 2.110188 TCTTGTGAGTCCCCTAGTGACT 59.890 50.000 10.93 10.93 45.47 3.41
4328 4723 4.251543 TCAATGAAGCGCGATATTCCTA 57.748 40.909 12.10 0.00 0.00 2.94
4433 4828 5.200483 TCCTTTTCATTGAGGTGTTGTCTT 58.800 37.500 0.00 0.00 34.57 3.01
4436 4831 3.140325 TCATTGAGGTGTTGTCTTCCC 57.860 47.619 0.00 0.00 0.00 3.97
4751 5148 2.317040 TCCTTTCGAGACCTTCACACT 58.683 47.619 0.00 0.00 0.00 3.55
4752 5149 2.296471 TCCTTTCGAGACCTTCACACTC 59.704 50.000 0.00 0.00 0.00 3.51
4753 5150 2.035961 CCTTTCGAGACCTTCACACTCA 59.964 50.000 0.00 0.00 0.00 3.41
4754 5151 2.795175 TTCGAGACCTTCACACTCAC 57.205 50.000 0.00 0.00 0.00 3.51
4755 5152 0.959553 TCGAGACCTTCACACTCACC 59.040 55.000 0.00 0.00 0.00 4.02
4756 5153 0.038159 CGAGACCTTCACACTCACCC 60.038 60.000 0.00 0.00 0.00 4.61
4757 5154 1.343069 GAGACCTTCACACTCACCCT 58.657 55.000 0.00 0.00 0.00 4.34
4758 5155 1.001406 GAGACCTTCACACTCACCCTG 59.999 57.143 0.00 0.00 0.00 4.45
4759 5156 0.759346 GACCTTCACACTCACCCTGT 59.241 55.000 0.00 0.00 0.00 4.00
4760 5157 0.469917 ACCTTCACACTCACCCTGTG 59.530 55.000 0.00 0.00 40.44 3.66
4761 5158 0.886490 CCTTCACACTCACCCTGTGC 60.886 60.000 0.00 0.00 39.17 4.57
4762 5159 1.224069 CTTCACACTCACCCTGTGCG 61.224 60.000 0.00 0.00 39.17 5.34
4763 5160 1.966901 TTCACACTCACCCTGTGCGT 61.967 55.000 0.00 0.00 39.17 5.24
4764 5161 1.523711 CACACTCACCCTGTGCGTT 60.524 57.895 0.00 0.00 38.86 4.84
4765 5162 1.227556 ACACTCACCCTGTGCGTTC 60.228 57.895 0.00 0.00 38.86 3.95
4766 5163 1.227527 CACTCACCCTGTGCGTTCA 60.228 57.895 0.00 0.00 28.48 3.18
4767 5164 1.069765 ACTCACCCTGTGCGTTCAG 59.930 57.895 2.79 2.79 26.04 3.02
4768 5165 1.069765 CTCACCCTGTGCGTTCAGT 59.930 57.895 7.85 0.00 32.98 3.41
4769 5166 0.532862 CTCACCCTGTGCGTTCAGTT 60.533 55.000 7.85 0.00 32.98 3.16
4770 5167 0.107410 TCACCCTGTGCGTTCAGTTT 60.107 50.000 7.85 0.00 32.98 2.66
4771 5168 1.139256 TCACCCTGTGCGTTCAGTTTA 59.861 47.619 7.85 0.00 32.98 2.01
4772 5169 2.151202 CACCCTGTGCGTTCAGTTTAT 58.849 47.619 7.85 0.00 34.02 1.40
4773 5170 2.552315 CACCCTGTGCGTTCAGTTTATT 59.448 45.455 7.85 0.00 34.02 1.40
4774 5171 2.812011 ACCCTGTGCGTTCAGTTTATTC 59.188 45.455 7.85 0.00 34.02 1.75
4775 5172 2.159707 CCCTGTGCGTTCAGTTTATTCG 60.160 50.000 7.85 0.00 34.02 3.34
4776 5173 2.159707 CCTGTGCGTTCAGTTTATTCGG 60.160 50.000 7.85 0.00 34.02 4.30
4777 5174 2.478894 CTGTGCGTTCAGTTTATTCGGT 59.521 45.455 1.82 0.00 0.00 4.69
4778 5175 2.873472 TGTGCGTTCAGTTTATTCGGTT 59.127 40.909 0.00 0.00 0.00 4.44
4779 5176 3.312973 TGTGCGTTCAGTTTATTCGGTTT 59.687 39.130 0.00 0.00 0.00 3.27
4780 5177 4.510711 TGTGCGTTCAGTTTATTCGGTTTA 59.489 37.500 0.00 0.00 0.00 2.01
4781 5178 4.842376 GTGCGTTCAGTTTATTCGGTTTAC 59.158 41.667 0.00 0.00 0.00 2.01
4782 5179 4.510711 TGCGTTCAGTTTATTCGGTTTACA 59.489 37.500 0.00 0.00 0.00 2.41
4783 5180 5.179742 TGCGTTCAGTTTATTCGGTTTACAT 59.820 36.000 0.00 0.00 0.00 2.29
4784 5181 5.506832 GCGTTCAGTTTATTCGGTTTACATG 59.493 40.000 0.00 0.00 0.00 3.21
4785 5182 6.619018 GCGTTCAGTTTATTCGGTTTACATGA 60.619 38.462 0.00 0.00 0.00 3.07
4786 5183 7.461107 CGTTCAGTTTATTCGGTTTACATGAT 58.539 34.615 0.00 0.00 0.00 2.45
4787 5184 7.960738 CGTTCAGTTTATTCGGTTTACATGATT 59.039 33.333 0.00 0.00 0.00 2.57
4788 5185 9.274065 GTTCAGTTTATTCGGTTTACATGATTC 57.726 33.333 0.00 0.00 0.00 2.52
4789 5186 7.680982 TCAGTTTATTCGGTTTACATGATTCG 58.319 34.615 0.00 0.00 0.00 3.34
4790 5187 7.546316 TCAGTTTATTCGGTTTACATGATTCGA 59.454 33.333 0.00 0.00 0.00 3.71
4791 5188 8.335356 CAGTTTATTCGGTTTACATGATTCGAT 58.665 33.333 0.00 0.00 0.00 3.59
4792 5189 8.889717 AGTTTATTCGGTTTACATGATTCGATT 58.110 29.630 0.00 1.35 0.00 3.34
4793 5190 9.498307 GTTTATTCGGTTTACATGATTCGATTT 57.502 29.630 0.00 0.00 0.00 2.17
4798 5195 7.999213 TCGGTTTACATGATTCGATTTATACG 58.001 34.615 0.00 0.00 0.00 3.06
4799 5196 7.115236 TCGGTTTACATGATTCGATTTATACGG 59.885 37.037 0.00 0.00 0.00 4.02
4800 5197 7.095940 CGGTTTACATGATTCGATTTATACGGT 60.096 37.037 0.00 0.00 0.00 4.83
4801 5198 8.553696 GGTTTACATGATTCGATTTATACGGTT 58.446 33.333 0.00 0.00 0.00 4.44
4802 5199 9.925268 GTTTACATGATTCGATTTATACGGTTT 57.075 29.630 0.00 0.00 0.00 3.27
4806 5203 8.670135 ACATGATTCGATTTATACGGTTTTTCA 58.330 29.630 0.00 0.00 0.00 2.69
4807 5204 9.158364 CATGATTCGATTTATACGGTTTTTCAG 57.842 33.333 0.00 0.00 0.00 3.02
4808 5205 8.259049 TGATTCGATTTATACGGTTTTTCAGT 57.741 30.769 0.00 0.00 0.00 3.41
4809 5206 8.723311 TGATTCGATTTATACGGTTTTTCAGTT 58.277 29.630 0.00 0.00 0.00 3.16
4810 5207 9.550811 GATTCGATTTATACGGTTTTTCAGTTT 57.449 29.630 0.00 0.00 0.00 2.66
4811 5208 8.716619 TTCGATTTATACGGTTTTTCAGTTTG 57.283 30.769 0.00 0.00 0.00 2.93
4812 5209 7.863666 TCGATTTATACGGTTTTTCAGTTTGT 58.136 30.769 0.00 0.00 0.00 2.83
4813 5210 8.986847 TCGATTTATACGGTTTTTCAGTTTGTA 58.013 29.630 0.00 0.00 0.00 2.41
4814 5211 9.763465 CGATTTATACGGTTTTTCAGTTTGTAT 57.237 29.630 0.00 0.00 0.00 2.29
4816 5213 9.849166 ATTTATACGGTTTTTCAGTTTGTATGG 57.151 29.630 0.00 0.00 0.00 2.74
4817 5214 6.887626 ATACGGTTTTTCAGTTTGTATGGT 57.112 33.333 0.00 0.00 0.00 3.55
4818 5215 7.982761 ATACGGTTTTTCAGTTTGTATGGTA 57.017 32.000 0.00 0.00 0.00 3.25
4819 5216 6.887626 ACGGTTTTTCAGTTTGTATGGTAT 57.112 33.333 0.00 0.00 0.00 2.73
4820 5217 7.279750 ACGGTTTTTCAGTTTGTATGGTATT 57.720 32.000 0.00 0.00 0.00 1.89
4821 5218 8.393671 ACGGTTTTTCAGTTTGTATGGTATTA 57.606 30.769 0.00 0.00 0.00 0.98
4822 5219 8.848182 ACGGTTTTTCAGTTTGTATGGTATTAA 58.152 29.630 0.00 0.00 0.00 1.40
4823 5220 9.849166 CGGTTTTTCAGTTTGTATGGTATTAAT 57.151 29.630 0.00 0.00 0.00 1.40
4830 5227 9.537192 TCAGTTTGTATGGTATTAATACTTCGG 57.463 33.333 21.86 7.62 32.70 4.30
4831 5228 9.321562 CAGTTTGTATGGTATTAATACTTCGGT 57.678 33.333 21.86 8.90 32.70 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.835819 TGTAGCTAGGAATCAGTTAGAGCAT 59.164 40.000 0.00 0.00 0.00 3.79
1 2 5.201243 TGTAGCTAGGAATCAGTTAGAGCA 58.799 41.667 0.00 0.00 0.00 4.26
2 3 5.776173 TGTAGCTAGGAATCAGTTAGAGC 57.224 43.478 0.00 0.00 0.00 4.09
3 4 6.155827 GCATGTAGCTAGGAATCAGTTAGAG 58.844 44.000 0.00 0.00 41.15 2.43
4 5 5.598417 TGCATGTAGCTAGGAATCAGTTAGA 59.402 40.000 0.00 0.00 45.94 2.10
5 6 5.847304 TGCATGTAGCTAGGAATCAGTTAG 58.153 41.667 0.00 0.00 45.94 2.34
6 7 5.869649 TGCATGTAGCTAGGAATCAGTTA 57.130 39.130 0.00 0.00 45.94 2.24
7 8 4.760530 TGCATGTAGCTAGGAATCAGTT 57.239 40.909 0.00 0.00 45.94 3.16
8 9 4.639334 CATGCATGTAGCTAGGAATCAGT 58.361 43.478 18.91 0.00 45.94 3.41
9 10 3.436015 GCATGCATGTAGCTAGGAATCAG 59.564 47.826 26.79 0.00 45.94 2.90
10 11 3.405831 GCATGCATGTAGCTAGGAATCA 58.594 45.455 26.79 0.00 45.94 2.57
11 12 2.746362 GGCATGCATGTAGCTAGGAATC 59.254 50.000 26.79 6.29 45.94 2.52
12 13 2.553904 GGGCATGCATGTAGCTAGGAAT 60.554 50.000 26.79 0.00 45.94 3.01
13 14 1.202806 GGGCATGCATGTAGCTAGGAA 60.203 52.381 26.79 0.00 45.94 3.36
14 15 0.397941 GGGCATGCATGTAGCTAGGA 59.602 55.000 26.79 0.00 45.94 2.94
15 16 0.109153 TGGGCATGCATGTAGCTAGG 59.891 55.000 26.79 0.03 45.94 3.02
16 17 1.233019 GTGGGCATGCATGTAGCTAG 58.767 55.000 26.79 0.81 45.94 3.42
17 18 0.545646 TGTGGGCATGCATGTAGCTA 59.454 50.000 26.79 9.42 45.94 3.32
18 19 0.323633 TTGTGGGCATGCATGTAGCT 60.324 50.000 26.79 0.00 45.94 3.32
19 20 0.531657 TTTGTGGGCATGCATGTAGC 59.468 50.000 26.79 13.46 45.96 3.58
20 21 1.135024 GGTTTGTGGGCATGCATGTAG 60.135 52.381 26.79 3.17 0.00 2.74
21 22 0.894141 GGTTTGTGGGCATGCATGTA 59.106 50.000 26.79 11.84 0.00 2.29
22 23 1.120184 TGGTTTGTGGGCATGCATGT 61.120 50.000 26.79 0.00 0.00 3.21
23 24 0.390603 CTGGTTTGTGGGCATGCATG 60.391 55.000 22.70 22.70 0.00 4.06
24 25 1.976898 CTGGTTTGTGGGCATGCAT 59.023 52.632 21.36 0.00 0.00 3.96
25 26 2.870119 GCTGGTTTGTGGGCATGCA 61.870 57.895 21.36 0.00 0.00 3.96
26 27 2.047939 GCTGGTTTGTGGGCATGC 60.048 61.111 9.90 9.90 0.00 4.06
27 28 2.658422 GGCTGGTTTGTGGGCATG 59.342 61.111 0.00 0.00 0.00 4.06
28 29 2.604382 GGGCTGGTTTGTGGGCAT 60.604 61.111 0.00 0.00 0.00 4.40
29 30 3.387609 AAGGGCTGGTTTGTGGGCA 62.388 57.895 0.00 0.00 0.00 5.36
30 31 2.524148 AAGGGCTGGTTTGTGGGC 60.524 61.111 0.00 0.00 0.00 5.36
31 32 2.871253 GCAAGGGCTGGTTTGTGGG 61.871 63.158 0.00 0.00 36.96 4.61
32 33 2.736531 GCAAGGGCTGGTTTGTGG 59.263 61.111 0.00 0.00 36.96 4.17
33 34 2.336088 CGCAAGGGCTGGTTTGTG 59.664 61.111 0.00 0.00 38.10 3.33
34 35 3.605664 GCGCAAGGGCTGGTTTGT 61.606 61.111 0.30 0.00 38.10 2.83
35 36 2.438951 ATTGCGCAAGGGCTGGTTTG 62.439 55.000 28.62 0.00 38.10 2.93
36 37 2.158561 GATTGCGCAAGGGCTGGTTT 62.159 55.000 28.62 7.98 38.10 3.27
37 38 2.601367 ATTGCGCAAGGGCTGGTT 60.601 55.556 28.62 5.83 38.10 3.67
38 39 3.064324 GATTGCGCAAGGGCTGGT 61.064 61.111 28.62 9.63 38.10 4.00
39 40 1.952102 ATTGATTGCGCAAGGGCTGG 61.952 55.000 28.62 0.00 38.10 4.85
40 41 0.740149 TATTGATTGCGCAAGGGCTG 59.260 50.000 28.62 0.00 38.10 4.85
41 42 1.134946 GTTATTGATTGCGCAAGGGCT 59.865 47.619 28.62 11.72 38.10 5.19
42 43 1.559831 GTTATTGATTGCGCAAGGGC 58.440 50.000 28.62 19.34 38.28 5.19
43 44 1.476085 TGGTTATTGATTGCGCAAGGG 59.524 47.619 28.62 0.00 38.28 3.95
44 45 2.937469 TGGTTATTGATTGCGCAAGG 57.063 45.000 28.62 0.00 38.28 3.61
45 46 2.536803 GCATGGTTATTGATTGCGCAAG 59.463 45.455 28.62 10.89 43.44 4.01
46 47 2.094338 TGCATGGTTATTGATTGCGCAA 60.094 40.909 27.24 27.24 36.11 4.85
47 48 1.475682 TGCATGGTTATTGATTGCGCA 59.524 42.857 5.66 5.66 36.11 6.09
48 49 2.206815 TGCATGGTTATTGATTGCGC 57.793 45.000 0.00 0.00 36.11 6.09
49 50 2.473609 GCATGCATGGTTATTGATTGCG 59.526 45.455 27.34 0.00 36.11 4.85
50 51 3.459145 TGCATGCATGGTTATTGATTGC 58.541 40.909 27.34 10.99 0.00 3.56
51 52 3.493129 GCTGCATGCATGGTTATTGATTG 59.507 43.478 27.34 5.57 42.31 2.67
52 53 3.493699 GGCTGCATGCATGGTTATTGATT 60.494 43.478 27.34 0.00 45.15 2.57
53 54 2.036733 GGCTGCATGCATGGTTATTGAT 59.963 45.455 27.34 0.00 45.15 2.57
54 55 1.409790 GGCTGCATGCATGGTTATTGA 59.590 47.619 27.34 0.00 45.15 2.57
55 56 1.137282 TGGCTGCATGCATGGTTATTG 59.863 47.619 27.34 7.95 45.15 1.90
56 57 1.487300 TGGCTGCATGCATGGTTATT 58.513 45.000 27.34 0.00 45.15 1.40
57 58 1.137479 GTTGGCTGCATGCATGGTTAT 59.863 47.619 27.34 0.00 45.15 1.89
58 59 0.531657 GTTGGCTGCATGCATGGTTA 59.468 50.000 27.34 3.47 45.15 2.85
59 60 1.294138 GTTGGCTGCATGCATGGTT 59.706 52.632 27.34 0.00 45.15 3.67
60 61 1.473497 TTGTTGGCTGCATGCATGGT 61.473 50.000 27.34 0.00 45.15 3.55
61 62 0.320858 TTTGTTGGCTGCATGCATGG 60.321 50.000 27.34 12.00 45.15 3.66
62 63 0.793861 GTTTGTTGGCTGCATGCATG 59.206 50.000 22.97 22.70 45.15 4.06
63 64 0.393448 TGTTTGTTGGCTGCATGCAT 59.607 45.000 22.97 0.00 45.15 3.96
64 65 0.249531 CTGTTTGTTGGCTGCATGCA 60.250 50.000 21.29 21.29 45.15 3.96
65 66 1.562575 GCTGTTTGTTGGCTGCATGC 61.563 55.000 11.82 11.82 41.94 4.06
66 67 0.947180 GGCTGTTTGTTGGCTGCATG 60.947 55.000 0.50 0.00 0.00 4.06
67 68 1.368579 GGCTGTTTGTTGGCTGCAT 59.631 52.632 0.50 0.00 0.00 3.96
68 69 2.795110 GGGCTGTTTGTTGGCTGCA 61.795 57.895 0.50 0.00 0.00 4.41
69 70 2.029518 GGGCTGTTTGTTGGCTGC 59.970 61.111 0.00 0.00 0.00 5.25
70 71 1.067916 GTGGGCTGTTTGTTGGCTG 59.932 57.895 0.00 0.00 0.00 4.85
71 72 2.489275 CGTGGGCTGTTTGTTGGCT 61.489 57.895 0.00 0.00 0.00 4.75
72 73 1.805428 ATCGTGGGCTGTTTGTTGGC 61.805 55.000 0.00 0.00 0.00 4.52
73 74 0.240945 GATCGTGGGCTGTTTGTTGG 59.759 55.000 0.00 0.00 0.00 3.77
74 75 0.240945 GGATCGTGGGCTGTTTGTTG 59.759 55.000 0.00 0.00 0.00 3.33
75 76 1.234615 CGGATCGTGGGCTGTTTGTT 61.235 55.000 0.00 0.00 0.00 2.83
76 77 1.671054 CGGATCGTGGGCTGTTTGT 60.671 57.895 0.00 0.00 0.00 2.83
77 78 2.398554 CCGGATCGTGGGCTGTTTG 61.399 63.158 0.00 0.00 0.00 2.93
78 79 2.046314 CCGGATCGTGGGCTGTTT 60.046 61.111 0.00 0.00 0.00 2.83
79 80 4.778143 GCCGGATCGTGGGCTGTT 62.778 66.667 5.05 0.00 45.93 3.16
84 85 4.473520 AAGCAGCCGGATCGTGGG 62.474 66.667 5.05 0.00 0.00 4.61
85 86 2.892425 GAAGCAGCCGGATCGTGG 60.892 66.667 5.05 0.00 0.00 4.94
86 87 3.257561 CGAAGCAGCCGGATCGTG 61.258 66.667 5.05 0.00 0.00 4.35
117 118 4.314440 TCGAGTGTGTGGCCTGGC 62.314 66.667 11.05 11.05 0.00 4.85
118 119 2.047844 CTCGAGTGTGTGGCCTGG 60.048 66.667 3.32 0.00 0.00 4.45
119 120 1.373497 GACTCGAGTGTGTGGCCTG 60.373 63.158 25.58 0.00 0.00 4.85
120 121 1.115930 AAGACTCGAGTGTGTGGCCT 61.116 55.000 25.58 8.96 0.00 5.19
121 122 0.946221 CAAGACTCGAGTGTGTGGCC 60.946 60.000 25.58 6.42 0.00 5.36
122 123 1.560860 GCAAGACTCGAGTGTGTGGC 61.561 60.000 25.58 19.15 0.00 5.01
123 124 0.249447 TGCAAGACTCGAGTGTGTGG 60.249 55.000 25.58 13.37 0.00 4.17
124 125 1.458445 CATGCAAGACTCGAGTGTGTG 59.542 52.381 25.58 19.17 0.00 3.82
125 126 1.069204 ACATGCAAGACTCGAGTGTGT 59.931 47.619 25.58 9.89 0.00 3.72
126 127 1.723542 GACATGCAAGACTCGAGTGTG 59.276 52.381 25.58 20.73 0.00 3.82
127 128 1.341209 TGACATGCAAGACTCGAGTGT 59.659 47.619 25.58 17.65 0.00 3.55
128 129 1.991264 CTGACATGCAAGACTCGAGTG 59.009 52.381 25.58 10.20 0.00 3.51
129 130 1.067283 CCTGACATGCAAGACTCGAGT 60.067 52.381 20.18 20.18 0.00 4.18
130 131 1.203287 TCCTGACATGCAAGACTCGAG 59.797 52.381 11.84 11.84 0.00 4.04
131 132 1.256812 TCCTGACATGCAAGACTCGA 58.743 50.000 0.00 0.00 0.00 4.04
132 133 2.084610 TTCCTGACATGCAAGACTCG 57.915 50.000 0.00 0.00 0.00 4.18
133 134 6.054295 AGATAATTCCTGACATGCAAGACTC 58.946 40.000 0.00 0.00 0.00 3.36
134 135 5.999044 AGATAATTCCTGACATGCAAGACT 58.001 37.500 0.00 0.00 0.00 3.24
135 136 6.054295 AGAGATAATTCCTGACATGCAAGAC 58.946 40.000 0.00 0.00 0.00 3.01
136 137 6.244552 AGAGATAATTCCTGACATGCAAGA 57.755 37.500 0.00 0.00 0.00 3.02
137 138 7.496920 TGTTAGAGATAATTCCTGACATGCAAG 59.503 37.037 0.00 0.00 0.00 4.01
138 139 7.337938 TGTTAGAGATAATTCCTGACATGCAA 58.662 34.615 0.00 0.00 0.00 4.08
139 140 6.888105 TGTTAGAGATAATTCCTGACATGCA 58.112 36.000 0.00 0.00 0.00 3.96
140 141 7.976135 ATGTTAGAGATAATTCCTGACATGC 57.024 36.000 0.00 0.00 36.30 4.06
141 142 9.775854 AGAATGTTAGAGATAATTCCTGACATG 57.224 33.333 0.00 0.00 37.26 3.21
142 143 9.995003 GAGAATGTTAGAGATAATTCCTGACAT 57.005 33.333 0.00 0.00 38.31 3.06
143 144 8.981659 TGAGAATGTTAGAGATAATTCCTGACA 58.018 33.333 0.00 0.00 32.33 3.58
144 145 9.995003 ATGAGAATGTTAGAGATAATTCCTGAC 57.005 33.333 0.00 0.00 30.83 3.51
153 154 8.523658 CGTCCCATAATGAGAATGTTAGAGATA 58.476 37.037 0.00 0.00 0.00 1.98
154 155 7.382110 CGTCCCATAATGAGAATGTTAGAGAT 58.618 38.462 0.00 0.00 0.00 2.75
155 156 6.239317 CCGTCCCATAATGAGAATGTTAGAGA 60.239 42.308 0.00 0.00 0.00 3.10
156 157 5.928839 CCGTCCCATAATGAGAATGTTAGAG 59.071 44.000 0.00 0.00 0.00 2.43
157 158 5.600898 TCCGTCCCATAATGAGAATGTTAGA 59.399 40.000 0.00 0.00 0.00 2.10
158 159 5.853936 TCCGTCCCATAATGAGAATGTTAG 58.146 41.667 0.00 0.00 0.00 2.34
159 160 5.221641 CCTCCGTCCCATAATGAGAATGTTA 60.222 44.000 0.00 0.00 0.00 2.41
160 161 4.444876 CCTCCGTCCCATAATGAGAATGTT 60.445 45.833 0.00 0.00 0.00 2.71
161 162 3.071602 CCTCCGTCCCATAATGAGAATGT 59.928 47.826 0.00 0.00 0.00 2.71
162 163 3.557898 CCCTCCGTCCCATAATGAGAATG 60.558 52.174 0.00 0.00 0.00 2.67
163 164 2.639839 CCCTCCGTCCCATAATGAGAAT 59.360 50.000 0.00 0.00 0.00 2.40
164 165 2.047061 CCCTCCGTCCCATAATGAGAA 58.953 52.381 0.00 0.00 0.00 2.87
165 166 1.219469 TCCCTCCGTCCCATAATGAGA 59.781 52.381 0.00 0.00 0.00 3.27
166 167 1.620819 CTCCCTCCGTCCCATAATGAG 59.379 57.143 0.00 0.00 0.00 2.90
167 168 1.062428 ACTCCCTCCGTCCCATAATGA 60.062 52.381 0.00 0.00 0.00 2.57
168 169 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
169 170 2.047830 GAACTCCCTCCGTCCCATAAT 58.952 52.381 0.00 0.00 0.00 1.28
170 171 1.492764 GAACTCCCTCCGTCCCATAA 58.507 55.000 0.00 0.00 0.00 1.90
171 172 0.398098 GGAACTCCCTCCGTCCCATA 60.398 60.000 0.00 0.00 0.00 2.74
172 173 1.689582 GGAACTCCCTCCGTCCCAT 60.690 63.158 0.00 0.00 0.00 4.00
173 174 2.284405 GGAACTCCCTCCGTCCCA 60.284 66.667 0.00 0.00 0.00 4.37
174 175 2.039137 AGGAACTCCCTCCGTCCC 59.961 66.667 0.00 0.00 43.31 4.46
182 183 2.742589 CAGCTACGAAAAAGGAACTCCC 59.257 50.000 0.00 0.00 38.49 4.30
183 184 3.400255 ACAGCTACGAAAAAGGAACTCC 58.600 45.455 0.00 0.00 38.49 3.85
184 185 6.723131 ATTACAGCTACGAAAAAGGAACTC 57.277 37.500 0.00 0.00 38.49 3.01
186 187 7.646526 ACAAAATTACAGCTACGAAAAAGGAAC 59.353 33.333 0.00 0.00 0.00 3.62
187 188 7.708998 ACAAAATTACAGCTACGAAAAAGGAA 58.291 30.769 0.00 0.00 0.00 3.36
188 189 7.266922 ACAAAATTACAGCTACGAAAAAGGA 57.733 32.000 0.00 0.00 0.00 3.36
189 190 7.924103 AACAAAATTACAGCTACGAAAAAGG 57.076 32.000 0.00 0.00 0.00 3.11
190 191 9.618410 CAAAACAAAATTACAGCTACGAAAAAG 57.382 29.630 0.00 0.00 0.00 2.27
191 192 9.141400 ACAAAACAAAATTACAGCTACGAAAAA 57.859 25.926 0.00 0.00 0.00 1.94
211 212 5.963586 CCGTAGACTTCTTGACAAACAAAAC 59.036 40.000 0.00 0.00 38.08 2.43
221 222 7.929785 ACAAAATAACTTCCGTAGACTTCTTGA 59.070 33.333 0.00 0.00 0.00 3.02
260 261 9.999660 TGGTTTTAATGTTGTACTCATGTAGTA 57.000 29.630 0.00 0.00 39.80 1.82
261 262 8.911918 TGGTTTTAATGTTGTACTCATGTAGT 57.088 30.769 0.00 0.00 42.62 2.73
273 274 8.012151 TCGCAACAAATATGGTTTTAATGTTG 57.988 30.769 10.46 10.46 45.35 3.33
280 281 7.546778 ACTTTTTCGCAACAAATATGGTTTT 57.453 28.000 0.00 0.00 0.00 2.43
336 337 1.400494 CTACACGCACCCAATTTAGCC 59.600 52.381 0.00 0.00 0.00 3.93
404 405 3.511146 GCAGAAATTGGGAGTTCCATTCA 59.489 43.478 6.57 0.00 46.52 2.57
479 480 3.990469 GCTGGACAATATGTATCCACTCG 59.010 47.826 0.00 0.00 37.60 4.18
485 486 4.681942 GTGACGAGCTGGACAATATGTATC 59.318 45.833 1.44 0.00 0.00 2.24
538 539 1.134401 CCGTGCTCTCTCTCTCTCTCT 60.134 57.143 0.00 0.00 0.00 3.10
540 541 0.748005 GCCGTGCTCTCTCTCTCTCT 60.748 60.000 0.00 0.00 0.00 3.10
623 624 0.670706 CTGCGACCTGCTGCTCTATA 59.329 55.000 0.00 0.00 46.63 1.31
651 652 1.444895 GATGCTTGCCGGTTTGCTG 60.445 57.895 1.90 0.00 0.00 4.41
783 784 6.663944 ACTAGAACTCGGCAATTTCATTAC 57.336 37.500 0.00 0.00 0.00 1.89
923 924 8.826710 CCAATTCTTCTGCAAATAATCTACGTA 58.173 33.333 0.00 0.00 0.00 3.57
924 925 7.336931 ACCAATTCTTCTGCAAATAATCTACGT 59.663 33.333 0.00 0.00 0.00 3.57
925 926 7.697691 ACCAATTCTTCTGCAAATAATCTACG 58.302 34.615 0.00 0.00 0.00 3.51
1023 1026 3.048602 CTCACGTTCCCGACCACT 58.951 61.111 0.00 0.00 37.88 4.00
1062 1065 1.065854 GTGACTCCACATAGCAGGCTT 60.066 52.381 0.00 0.00 42.72 4.35
1064 1067 0.462759 GGTGACTCCACATAGCAGGC 60.463 60.000 0.00 0.00 44.93 4.85
1092 1095 2.867624 AGCTCATTTTTCAGGCACTCA 58.132 42.857 0.00 0.00 34.60 3.41
1113 1116 0.601558 GGTACCACTTCAGTCGCTCA 59.398 55.000 7.15 0.00 0.00 4.26
1199 1202 0.470833 AGCCTCATATGAGACGGCCT 60.471 55.000 30.40 15.97 44.74 5.19
1237 1240 1.095228 CGCTTGCCCATGTAATCGGT 61.095 55.000 0.00 0.00 0.00 4.69
1255 1258 1.160137 CCCTTCTTGAGCCTGTTTCG 58.840 55.000 0.00 0.00 0.00 3.46
1281 1284 1.133976 GCATACCTTGAGATGGCACCT 60.134 52.381 0.00 0.00 0.00 4.00
1409 1418 6.254157 GTCGTCAACAACACTACTGTCTAAAA 59.746 38.462 0.00 0.00 0.00 1.52
1432 1441 2.993899 CACCATCTACGTGAACCTTGTC 59.006 50.000 0.00 0.00 32.77 3.18
1433 1442 2.631062 TCACCATCTACGTGAACCTTGT 59.369 45.455 0.00 0.00 37.31 3.16
1434 1443 3.254060 CTCACCATCTACGTGAACCTTG 58.746 50.000 0.00 0.00 39.66 3.61
1581 1596 1.341877 CCACCCATGGCAACTATGGAA 60.342 52.381 6.09 0.00 43.67 3.53
1735 1750 1.761711 TCACCCCTTGTCCCCATTAA 58.238 50.000 0.00 0.00 0.00 1.40
1817 1904 7.028926 TCATCGAGAACTACCAAGTATCTTC 57.971 40.000 0.00 0.00 33.75 2.87
1855 1942 5.144100 TCTGTTTATTTGGTCCCATGTGTT 58.856 37.500 0.00 0.00 0.00 3.32
2736 3115 6.739565 GCCATTCAAGTTTTGGACAGAAGAAT 60.740 38.462 0.00 0.00 31.18 2.40
2807 3186 9.319143 CGATACAGAAGGAATTCTAAAGACAAT 57.681 33.333 5.23 0.00 0.00 2.71
2827 3206 1.346395 AGCTGGTTGGACAACGATACA 59.654 47.619 8.89 1.32 42.02 2.29
2833 3212 4.944048 ACAATTTTAGCTGGTTGGACAAC 58.056 39.130 6.64 6.64 40.45 3.32
2836 3215 5.195001 TCAACAATTTTAGCTGGTTGGAC 57.805 39.130 0.00 0.00 39.33 4.02
2899 3278 2.142356 TGCACCCACCAATTATCCTG 57.858 50.000 0.00 0.00 0.00 3.86
2933 3312 4.205587 CCTTTGCATCTTCTAAGCCTGAT 58.794 43.478 0.00 0.00 0.00 2.90
3065 3444 8.359875 TCATTTCCAAGATAAACATGCCTTAA 57.640 30.769 0.00 0.00 0.00 1.85
3212 3606 1.804748 CGCCCAAGAGAAGGTTGTTAC 59.195 52.381 0.00 0.00 0.00 2.50
3415 3809 0.679002 CCAGCACCACAAGAGATGGG 60.679 60.000 0.00 0.00 41.97 4.00
3436 3830 1.136305 CGGCCACGATATCCGGATAAT 59.864 52.381 27.35 15.75 44.60 1.28
3562 3956 1.228124 CCGAAGTGCAAGGTGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
3592 3986 1.710816 CCTCGGGGAGCTTCTCTATT 58.289 55.000 0.00 0.00 33.58 1.73
3706 4100 2.171237 TGTGCATACCTTCCATCCTCTG 59.829 50.000 0.00 0.00 0.00 3.35
3788 4182 6.375151 ATTGAGCACAACGAGCTGTTAAGC 62.375 45.833 0.00 4.06 43.58 3.09
3795 4189 2.481952 GAGAAATTGAGCACAACGAGCT 59.518 45.455 0.00 0.00 46.82 4.09
3800 4194 2.912967 CGCATGAGAAATTGAGCACAAC 59.087 45.455 0.00 0.00 38.90 3.32
3866 4261 3.499048 TCGTAGTCAAAGATCTTGCGAC 58.501 45.455 22.20 22.20 0.00 5.19
3909 4304 2.503356 AGTAATGAGTGCCTTGGGAGAG 59.497 50.000 0.00 0.00 0.00 3.20
3910 4305 2.551270 AGTAATGAGTGCCTTGGGAGA 58.449 47.619 0.00 0.00 0.00 3.71
3936 4331 3.499918 GCTTTAAGTCGGAGCATGCATAT 59.500 43.478 21.98 0.00 36.45 1.78
4028 4423 3.511146 GCCCTTGAAAATCCTTCATCACA 59.489 43.478 0.00 0.00 0.00 3.58
4044 4439 1.007387 GACTGCAAAACGGCCCTTG 60.007 57.895 0.00 0.00 0.00 3.61
4072 4467 5.416952 AGCATTGGTTCTTTGGATAACTGAG 59.583 40.000 0.00 0.00 0.00 3.35
4084 4479 2.306847 ACCGTTGAAGCATTGGTTCTT 58.693 42.857 24.43 2.84 40.24 2.52
4099 4494 2.094659 CAGCGAGCGATCAACCGTT 61.095 57.895 0.00 0.00 0.00 4.44
4104 4499 1.227350 CCCATCAGCGAGCGATCAA 60.227 57.895 0.00 0.00 0.00 2.57
4105 4500 2.418777 CCCATCAGCGAGCGATCA 59.581 61.111 0.00 0.00 0.00 2.92
4106 4501 2.356793 CCCCATCAGCGAGCGATC 60.357 66.667 0.00 0.00 0.00 3.69
4107 4502 4.615815 GCCCCATCAGCGAGCGAT 62.616 66.667 0.00 0.00 0.00 4.58
4110 4505 3.472943 ATGAGCCCCATCAGCGAGC 62.473 63.158 0.00 0.00 34.64 5.03
4111 4506 2.827423 ATGAGCCCCATCAGCGAG 59.173 61.111 0.00 0.00 34.64 5.03
4118 4513 1.216064 TTAGCAGTGATGAGCCCCAT 58.784 50.000 0.00 0.00 38.43 4.00
4119 4514 1.216064 ATTAGCAGTGATGAGCCCCA 58.784 50.000 0.00 0.00 0.00 4.96
4120 4515 3.008375 TCATATTAGCAGTGATGAGCCCC 59.992 47.826 0.00 0.00 0.00 5.80
4121 4516 4.277515 TCATATTAGCAGTGATGAGCCC 57.722 45.455 0.00 0.00 0.00 5.19
4136 4531 1.680338 GCCGCCAACTCCTTCATATT 58.320 50.000 0.00 0.00 0.00 1.28
4141 4536 4.699522 ACCGCCGCCAACTCCTTC 62.700 66.667 0.00 0.00 0.00 3.46
4154 4549 1.272781 CGAACAGATGAGAAGACCGC 58.727 55.000 0.00 0.00 0.00 5.68
4162 4557 4.867047 ACATGACTAAAGCGAACAGATGAG 59.133 41.667 0.00 0.00 0.00 2.90
4165 4560 7.254117 CGATTTACATGACTAAAGCGAACAGAT 60.254 37.037 16.86 0.00 44.44 2.90
4204 4599 2.890945 TCTAGCTAGAATATGTGCCGCA 59.109 45.455 21.26 0.00 0.00 5.69
4238 4633 9.099454 GGTTACATGAAAAATAGAGTCACTAGG 57.901 37.037 0.00 0.00 34.35 3.02
4247 4642 5.438698 TCCGGGGTTACATGAAAAATAGA 57.561 39.130 0.00 0.00 0.00 1.98
4334 4729 8.192774 CGTAGACCAGTTTACTCCATTACATTA 58.807 37.037 0.00 0.00 0.00 1.90
4433 4828 3.059982 CGCAAGTCAGACCAGGGA 58.940 61.111 0.00 0.00 0.00 4.20
4663 5059 4.759953 ACTCCCTCTAGTTGGGTTTCTAA 58.240 43.478 18.40 3.14 44.84 2.10
4664 5060 4.351127 GACTCCCTCTAGTTGGGTTTCTA 58.649 47.826 18.40 3.69 44.84 2.10
4665 5061 3.174779 GACTCCCTCTAGTTGGGTTTCT 58.825 50.000 18.40 4.91 44.84 2.52
4751 5148 0.107410 AAACTGAACGCACAGGGTGA 60.107 50.000 12.73 0.00 41.59 4.02
4752 5149 1.588674 TAAACTGAACGCACAGGGTG 58.411 50.000 12.73 0.00 41.59 4.61
4753 5150 2.561478 ATAAACTGAACGCACAGGGT 57.439 45.000 12.73 4.18 41.59 4.34
4754 5151 2.159707 CGAATAAACTGAACGCACAGGG 60.160 50.000 12.73 0.00 41.59 4.45
4755 5152 2.159707 CCGAATAAACTGAACGCACAGG 60.160 50.000 12.73 0.00 41.59 4.00
4756 5153 2.478894 ACCGAATAAACTGAACGCACAG 59.521 45.455 7.71 7.71 42.78 3.66
4757 5154 2.485903 ACCGAATAAACTGAACGCACA 58.514 42.857 0.00 0.00 0.00 4.57
4758 5155 3.531262 AACCGAATAAACTGAACGCAC 57.469 42.857 0.00 0.00 0.00 5.34
4759 5156 4.510711 TGTAAACCGAATAAACTGAACGCA 59.489 37.500 0.00 0.00 0.00 5.24
4760 5157 5.021120 TGTAAACCGAATAAACTGAACGC 57.979 39.130 0.00 0.00 0.00 4.84
4761 5158 6.823531 TCATGTAAACCGAATAAACTGAACG 58.176 36.000 0.00 0.00 0.00 3.95
4762 5159 9.274065 GAATCATGTAAACCGAATAAACTGAAC 57.726 33.333 0.00 0.00 0.00 3.18
4763 5160 8.172484 CGAATCATGTAAACCGAATAAACTGAA 58.828 33.333 0.00 0.00 0.00 3.02
4764 5161 7.546316 TCGAATCATGTAAACCGAATAAACTGA 59.454 33.333 0.00 0.00 0.00 3.41
4765 5162 7.680982 TCGAATCATGTAAACCGAATAAACTG 58.319 34.615 0.00 0.00 0.00 3.16
4766 5163 7.837202 TCGAATCATGTAAACCGAATAAACT 57.163 32.000 0.00 0.00 0.00 2.66
4767 5164 9.498307 AAATCGAATCATGTAAACCGAATAAAC 57.502 29.630 0.00 0.00 0.00 2.01
4772 5169 8.481641 CGTATAAATCGAATCATGTAAACCGAA 58.518 33.333 0.00 0.00 0.00 4.30
4773 5170 7.115236 CCGTATAAATCGAATCATGTAAACCGA 59.885 37.037 0.00 0.00 0.00 4.69
4774 5171 7.095940 ACCGTATAAATCGAATCATGTAAACCG 60.096 37.037 0.00 0.00 0.00 4.44
4775 5172 8.080083 ACCGTATAAATCGAATCATGTAAACC 57.920 34.615 0.00 0.00 0.00 3.27
4776 5173 9.925268 AAACCGTATAAATCGAATCATGTAAAC 57.075 29.630 0.00 0.00 0.00 2.01
4780 5177 8.670135 TGAAAAACCGTATAAATCGAATCATGT 58.330 29.630 0.00 0.00 0.00 3.21
4781 5178 9.158364 CTGAAAAACCGTATAAATCGAATCATG 57.842 33.333 0.00 0.00 0.00 3.07
4782 5179 8.889717 ACTGAAAAACCGTATAAATCGAATCAT 58.110 29.630 0.00 0.00 0.00 2.45
4783 5180 8.259049 ACTGAAAAACCGTATAAATCGAATCA 57.741 30.769 0.00 0.00 0.00 2.57
4784 5181 9.550811 AAACTGAAAAACCGTATAAATCGAATC 57.449 29.630 0.00 0.00 0.00 2.52
4785 5182 9.337091 CAAACTGAAAAACCGTATAAATCGAAT 57.663 29.630 0.00 0.00 0.00 3.34
4786 5183 8.344098 ACAAACTGAAAAACCGTATAAATCGAA 58.656 29.630 0.00 0.00 0.00 3.71
4787 5184 7.863666 ACAAACTGAAAAACCGTATAAATCGA 58.136 30.769 0.00 0.00 0.00 3.59
4788 5185 9.763465 ATACAAACTGAAAAACCGTATAAATCG 57.237 29.630 0.00 0.00 0.00 3.34
4790 5187 9.849166 CCATACAAACTGAAAAACCGTATAAAT 57.151 29.630 0.00 0.00 0.00 1.40
4791 5188 8.848182 ACCATACAAACTGAAAAACCGTATAAA 58.152 29.630 0.00 0.00 0.00 1.40
4792 5189 8.393671 ACCATACAAACTGAAAAACCGTATAA 57.606 30.769 0.00 0.00 0.00 0.98
4793 5190 7.982761 ACCATACAAACTGAAAAACCGTATA 57.017 32.000 0.00 0.00 0.00 1.47
4794 5191 6.887626 ACCATACAAACTGAAAAACCGTAT 57.112 33.333 0.00 0.00 0.00 3.06
4795 5192 7.982761 ATACCATACAAACTGAAAAACCGTA 57.017 32.000 0.00 0.00 0.00 4.02
4796 5193 6.887626 ATACCATACAAACTGAAAAACCGT 57.112 33.333 0.00 0.00 0.00 4.83
4797 5194 9.849166 ATTAATACCATACAAACTGAAAAACCG 57.151 29.630 0.00 0.00 0.00 4.44
4804 5201 9.537192 CCGAAGTATTAATACCATACAAACTGA 57.463 33.333 19.74 0.00 33.79 3.41
4805 5202 9.321562 ACCGAAGTATTAATACCATACAAACTG 57.678 33.333 19.74 3.48 33.79 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.