Multiple sequence alignment - TraesCS1A01G323400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G323400 chr1A 100.000 5784 0 0 1 5784 513740518 513734735 0.000000e+00 10682.0
1 TraesCS1A01G323400 chr1A 92.473 93 3 3 160 248 513833441 513833349 4.700000e-26 130.0
2 TraesCS1A01G323400 chr1D 95.084 3499 150 18 992 4475 416475450 416471959 0.000000e+00 5489.0
3 TraesCS1A01G323400 chr1D 86.716 813 67 16 160 955 416476237 416475449 0.000000e+00 865.0
4 TraesCS1A01G323400 chr1D 92.462 597 34 9 4533 5125 416471958 416471369 0.000000e+00 843.0
5 TraesCS1A01G323400 chr1D 82.816 483 33 26 5310 5756 416471243 416470775 2.530000e-103 387.0
6 TraesCS1A01G323400 chr1D 94.382 89 5 0 160 248 416480061 416479973 2.810000e-28 137.0
7 TraesCS1A01G323400 chr1B 88.412 2822 202 60 159 2952 563032381 563029657 0.000000e+00 3284.0
8 TraesCS1A01G323400 chr1B 85.569 1372 157 24 2956 4302 563029544 563028189 0.000000e+00 1399.0
9 TraesCS1A01G323400 chr1B 89.109 505 39 10 4645 5138 563028083 563027584 1.070000e-171 614.0
10 TraesCS1A01G323400 chr1B 78.899 654 36 51 5159 5771 563027590 563026998 3.320000e-92 350.0
11 TraesCS1A01G323400 chr1B 92.021 188 8 3 159 346 563064832 563064652 2.070000e-64 257.0
12 TraesCS1A01G323400 chr1B 91.566 83 6 1 166 248 563066256 563066175 4.740000e-21 113.0
13 TraesCS1A01G323400 chr5A 91.111 135 9 2 1 134 562492118 562492250 4.600000e-41 180.0
14 TraesCS1A01G323400 chr4A 95.918 98 4 0 1 98 398501403 398501306 6.000000e-35 159.0
15 TraesCS1A01G323400 chr7A 82.645 121 13 4 5 124 603354726 603354839 3.690000e-17 100.0
16 TraesCS1A01G323400 chr7D 84.706 85 6 4 5 82 523078678 523078594 1.730000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G323400 chr1A 513734735 513740518 5783 True 10682.00 10682 100.00000 1 5784 1 chr1A.!!$R1 5783
1 TraesCS1A01G323400 chr1D 416470775 416480061 9286 True 1544.20 5489 90.29200 160 5756 5 chr1D.!!$R1 5596
2 TraesCS1A01G323400 chr1B 563026998 563032381 5383 True 1411.75 3284 85.49725 159 5771 4 chr1B.!!$R1 5612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
737 4582 0.105964 TGTCAGTGCGTGCCTACTTT 59.894 50.000 0.00 0.0 0.0 2.66 F
1231 5087 0.168128 CGTTTCTGCGGGGTTGATTC 59.832 55.000 0.00 0.0 0.0 2.52 F
1400 5260 0.766674 AGTCCCCCTGCACAGTGTTA 60.767 55.000 1.61 0.0 0.0 2.41 F
2120 5993 2.158914 CCTTTTTGCCCAAGAAACTGCT 60.159 45.455 0.00 0.0 0.0 4.24 F
3268 7258 2.303311 GCATACCCCTCTCCCTGTAATC 59.697 54.545 0.00 0.0 0.0 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 5684 0.034896 TCTTCTGCCCACGAACTTCC 59.965 55.000 0.00 0.0 0.00 3.46 R
2662 6537 0.384309 TTCTGCTATACCTGCGGTCG 59.616 55.000 3.45 0.0 37.09 4.79 R
2890 6770 4.864704 TGAAAAACTATCAGCAAACCCC 57.135 40.909 0.00 0.0 0.00 4.95 R
3872 7884 0.245539 CAAAGCCAACCTCTGCCATG 59.754 55.000 0.00 0.0 0.00 3.66 R
4936 8959 0.034896 GCAACTTCTTCAGACCCGGA 59.965 55.000 0.73 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.945033 TTTTAGTGCAATCAAACCATCTTTC 57.055 32.000 0.00 0.00 0.00 2.62
47 48 6.899393 TTAGTGCAATCAAACCATCTTTCT 57.101 33.333 0.00 0.00 0.00 2.52
48 49 7.994425 TTAGTGCAATCAAACCATCTTTCTA 57.006 32.000 0.00 0.00 0.00 2.10
49 50 8.579850 TTAGTGCAATCAAACCATCTTTCTAT 57.420 30.769 0.00 0.00 0.00 1.98
50 51 9.679661 TTAGTGCAATCAAACCATCTTTCTATA 57.320 29.630 0.00 0.00 0.00 1.31
51 52 8.757982 AGTGCAATCAAACCATCTTTCTATAT 57.242 30.769 0.00 0.00 0.00 0.86
52 53 9.851686 AGTGCAATCAAACCATCTTTCTATATA 57.148 29.630 0.00 0.00 0.00 0.86
96 97 8.942338 TTGCATATTAGAATTAGTTGAGACGT 57.058 30.769 0.00 0.00 0.00 4.34
97 98 8.352752 TGCATATTAGAATTAGTTGAGACGTG 57.647 34.615 0.00 0.00 0.00 4.49
98 99 7.042725 TGCATATTAGAATTAGTTGAGACGTGC 60.043 37.037 0.00 0.00 0.00 5.34
99 100 5.950965 ATTAGAATTAGTTGAGACGTGCG 57.049 39.130 0.00 0.00 0.00 5.34
100 101 3.299340 AGAATTAGTTGAGACGTGCGT 57.701 42.857 0.00 0.00 0.00 5.24
101 102 2.987149 AGAATTAGTTGAGACGTGCGTG 59.013 45.455 0.67 0.00 0.00 5.34
102 103 2.433868 ATTAGTTGAGACGTGCGTGT 57.566 45.000 0.67 0.00 0.00 4.49
103 104 2.212869 TTAGTTGAGACGTGCGTGTT 57.787 45.000 0.67 0.00 0.00 3.32
104 105 1.483316 TAGTTGAGACGTGCGTGTTG 58.517 50.000 0.67 0.00 0.00 3.33
105 106 1.367665 GTTGAGACGTGCGTGTTGC 60.368 57.895 0.67 0.00 46.70 4.17
125 126 4.977741 GCACGTGCAAGTTTACTAGTAA 57.022 40.909 34.52 11.38 41.59 2.24
126 127 5.333046 GCACGTGCAAGTTTACTAGTAAA 57.667 39.130 34.52 21.52 41.59 2.01
127 128 5.135330 GCACGTGCAAGTTTACTAGTAAAC 58.865 41.667 35.74 35.74 45.49 2.01
128 129 5.837452 GCACGTGCAAGTTTACTAGTAAACC 60.837 44.000 37.44 27.91 45.81 3.27
129 130 8.916918 GCACGTGCAAGTTTACTAGTAAACCG 62.917 46.154 37.44 33.84 45.81 4.44
140 141 9.468532 GTTTACTAGTAAACCGAAAAGAAGAGA 57.531 33.333 34.04 7.60 45.47 3.10
141 142 9.688592 TTTACTAGTAAACCGAAAAGAAGAGAG 57.311 33.333 21.52 0.00 30.78 3.20
142 143 7.287512 ACTAGTAAACCGAAAAGAAGAGAGT 57.712 36.000 0.00 0.00 0.00 3.24
143 144 8.401490 ACTAGTAAACCGAAAAGAAGAGAGTA 57.599 34.615 0.00 0.00 0.00 2.59
144 145 8.513774 ACTAGTAAACCGAAAAGAAGAGAGTAG 58.486 37.037 0.00 0.00 0.00 2.57
145 146 7.287512 AGTAAACCGAAAAGAAGAGAGTAGT 57.712 36.000 0.00 0.00 0.00 2.73
146 147 8.401490 AGTAAACCGAAAAGAAGAGAGTAGTA 57.599 34.615 0.00 0.00 0.00 1.82
147 148 8.296000 AGTAAACCGAAAAGAAGAGAGTAGTAC 58.704 37.037 0.00 0.00 0.00 2.73
148 149 6.897706 AACCGAAAAGAAGAGAGTAGTACT 57.102 37.500 1.37 1.37 0.00 2.73
149 150 7.992754 AACCGAAAAGAAGAGAGTAGTACTA 57.007 36.000 1.88 0.00 0.00 1.82
150 151 7.376435 ACCGAAAAGAAGAGAGTAGTACTAC 57.624 40.000 23.03 23.03 36.35 2.73
152 153 8.317679 ACCGAAAAGAAGAGAGTAGTACTACTA 58.682 37.037 30.80 0.00 45.63 1.82
153 154 8.819974 CCGAAAAGAAGAGAGTAGTACTACTAG 58.180 40.741 30.80 9.42 45.63 2.57
154 155 8.330302 CGAAAAGAAGAGAGTAGTACTACTAGC 58.670 40.741 30.80 24.48 45.63 3.42
155 156 9.165035 GAAAAGAAGAGAGTAGTACTACTAGCA 57.835 37.037 30.80 0.00 45.63 3.49
156 157 8.726870 AAAGAAGAGAGTAGTACTACTAGCAG 57.273 38.462 30.80 0.00 45.63 4.24
157 158 7.427989 AGAAGAGAGTAGTACTACTAGCAGT 57.572 40.000 30.80 17.32 45.63 4.40
181 182 0.389556 ATGCATGAGCGGCTCTATCG 60.390 55.000 28.42 15.62 46.23 2.92
254 4079 4.320456 ACGGGCCACAGCACAGAG 62.320 66.667 4.39 0.00 45.52 3.35
268 4093 1.591059 CAGAGCGCGAGATTCTGGG 60.591 63.158 12.10 0.00 39.30 4.45
270 4095 4.537433 AGCGCGAGATTCTGGGCC 62.537 66.667 12.10 0.00 44.27 5.80
342 4167 3.787458 GCTGCTACGAGCCTTCAC 58.213 61.111 0.00 0.00 41.51 3.18
343 4168 2.161486 GCTGCTACGAGCCTTCACG 61.161 63.158 0.00 0.00 41.51 4.35
344 4169 1.517257 CTGCTACGAGCCTTCACGG 60.517 63.158 0.00 0.00 41.51 4.94
390 4218 2.505866 GAATCGCGAATCGTGCTTTTT 58.494 42.857 15.24 0.00 37.28 1.94
416 4244 1.191647 CGAAAAAGACGTCCAGGTTCG 59.808 52.381 19.81 19.81 0.00 3.95
426 4254 0.612732 TCCAGGTTCGACGTACCCAT 60.613 55.000 18.74 0.00 36.27 4.00
502 4345 2.718563 GCCTCCCTCCGAATAAACAAA 58.281 47.619 0.00 0.00 0.00 2.83
544 4387 0.796312 CGAAAATCCCACCAGTCACG 59.204 55.000 0.00 0.00 0.00 4.35
546 4389 0.768622 AAAATCCCACCAGTCACGGA 59.231 50.000 0.00 0.00 0.00 4.69
559 4402 3.239253 ACGGACAGGTGGGGTCAC 61.239 66.667 0.00 0.00 42.91 3.67
587 4430 0.674534 AGACCCACTTGTCACTCGAC 59.325 55.000 0.00 0.00 42.93 4.20
591 4434 2.022129 CACTTGTCACTCGACGGCC 61.022 63.158 0.00 0.00 45.80 6.13
733 4578 2.207229 ACCTGTCAGTGCGTGCCTA 61.207 57.895 0.00 0.00 0.00 3.93
734 4579 1.738099 CCTGTCAGTGCGTGCCTAC 60.738 63.158 0.00 0.00 0.00 3.18
735 4580 1.290324 CTGTCAGTGCGTGCCTACT 59.710 57.895 0.00 0.00 0.00 2.57
736 4581 0.319900 CTGTCAGTGCGTGCCTACTT 60.320 55.000 0.00 0.00 0.00 2.24
737 4582 0.105964 TGTCAGTGCGTGCCTACTTT 59.894 50.000 0.00 0.00 0.00 2.66
738 4583 0.512952 GTCAGTGCGTGCCTACTTTG 59.487 55.000 0.00 0.00 0.00 2.77
739 4584 1.207593 CAGTGCGTGCCTACTTTGC 59.792 57.895 0.00 0.00 0.00 3.68
796 4648 4.376340 GGAGCACATTTCCCATTACTTG 57.624 45.455 0.00 0.00 0.00 3.16
800 4652 3.763897 GCACATTTCCCATTACTTGTCCT 59.236 43.478 0.00 0.00 0.00 3.85
951 4804 2.341911 GCCCGCATCTCTCTAGGC 59.658 66.667 0.00 0.00 0.00 3.93
952 4805 2.206536 GCCCGCATCTCTCTAGGCT 61.207 63.158 0.00 0.00 37.42 4.58
953 4806 1.963679 CCCGCATCTCTCTAGGCTC 59.036 63.158 0.00 0.00 0.00 4.70
955 4808 1.578926 CGCATCTCTCTAGGCTCCG 59.421 63.158 0.00 0.00 0.00 4.63
956 4809 0.886938 CGCATCTCTCTAGGCTCCGA 60.887 60.000 0.00 0.00 0.00 4.55
957 4810 0.596082 GCATCTCTCTAGGCTCCGAC 59.404 60.000 0.00 0.00 0.00 4.79
959 4812 0.250553 ATCTCTCTAGGCTCCGACCG 60.251 60.000 0.00 0.00 33.69 4.79
960 4813 2.516460 TCTCTAGGCTCCGACCGC 60.516 66.667 0.00 0.00 33.69 5.68
971 4824 4.933064 CGACCGCCCGCATCTCTC 62.933 72.222 0.00 0.00 0.00 3.20
972 4825 3.532155 GACCGCCCGCATCTCTCT 61.532 66.667 0.00 0.00 0.00 3.10
973 4826 2.123854 ACCGCCCGCATCTCTCTA 60.124 61.111 0.00 0.00 0.00 2.43
974 4827 2.136196 GACCGCCCGCATCTCTCTAG 62.136 65.000 0.00 0.00 0.00 2.43
975 4828 2.647875 CGCCCGCATCTCTCTAGG 59.352 66.667 0.00 0.00 0.00 3.02
976 4829 2.341911 GCCCGCATCTCTCTAGGC 59.658 66.667 0.00 0.00 0.00 3.93
977 4830 2.206536 GCCCGCATCTCTCTAGGCT 61.207 63.158 0.00 0.00 37.42 4.58
978 4831 1.963679 CCCGCATCTCTCTAGGCTC 59.036 63.158 0.00 0.00 0.00 4.70
979 4832 1.531739 CCCGCATCTCTCTAGGCTCC 61.532 65.000 0.00 0.00 0.00 4.70
980 4833 1.578926 CGCATCTCTCTAGGCTCCG 59.421 63.158 0.00 0.00 0.00 4.63
981 4834 0.886938 CGCATCTCTCTAGGCTCCGA 60.887 60.000 0.00 0.00 0.00 4.55
982 4835 0.596082 GCATCTCTCTAGGCTCCGAC 59.404 60.000 0.00 0.00 0.00 4.79
983 4836 1.243902 CATCTCTCTAGGCTCCGACC 58.756 60.000 0.00 0.00 0.00 4.79
984 4837 0.250553 ATCTCTCTAGGCTCCGACCG 60.251 60.000 0.00 0.00 33.69 4.79
985 4838 2.516460 TCTCTAGGCTCCGACCGC 60.516 66.667 0.00 0.00 33.69 5.68
986 4839 2.517402 CTCTAGGCTCCGACCGCT 60.517 66.667 0.00 0.00 33.69 5.52
987 4840 2.516460 TCTAGGCTCCGACCGCTC 60.516 66.667 0.00 0.00 33.69 5.03
988 4841 3.955101 CTAGGCTCCGACCGCTCG 61.955 72.222 0.00 0.00 39.83 5.03
1041 4894 2.342648 GAGTTCCACGGCTTCGGT 59.657 61.111 0.00 0.00 38.38 4.69
1182 5038 3.469863 TTCTGCGGTGTGGTGGGAC 62.470 63.158 0.00 0.00 0.00 4.46
1231 5087 0.168128 CGTTTCTGCGGGGTTGATTC 59.832 55.000 0.00 0.00 0.00 2.52
1400 5260 0.766674 AGTCCCCCTGCACAGTGTTA 60.767 55.000 1.61 0.00 0.00 2.41
1428 5290 2.671070 CCATCGCCCAGGAACACT 59.329 61.111 0.00 0.00 0.00 3.55
1523 5387 4.398319 GGTCATATACCCCTGGAATGTTG 58.602 47.826 0.00 0.00 43.16 3.33
1620 5493 5.554070 TCTGATGCTCTGAATTCTGAAACA 58.446 37.500 14.97 15.29 0.00 2.83
1625 5498 8.145767 TGATGCTCTGAATTCTGAAACATTTTT 58.854 29.630 21.37 8.92 0.00 1.94
1626 5499 9.630098 GATGCTCTGAATTCTGAAACATTTTTA 57.370 29.630 21.37 3.91 0.00 1.52
1630 5503 9.107367 CTCTGAATTCTGAAACATTTTTACGTC 57.893 33.333 14.97 0.00 0.00 4.34
1811 5684 3.417275 CTACCAGCAGAGCGACCGG 62.417 68.421 0.00 0.00 0.00 5.28
2120 5993 2.158914 CCTTTTTGCCCAAGAAACTGCT 60.159 45.455 0.00 0.00 0.00 4.24
2168 6041 2.979678 ACAGTCGGGGGCTTATTATGAT 59.020 45.455 0.00 0.00 0.00 2.45
2393 6266 5.356751 TGTTGTTGTTGTTTCAGATAGTGCT 59.643 36.000 0.00 0.00 0.00 4.40
2423 6296 4.396166 CCTGTTGGCTTTAACCTCTATGTG 59.604 45.833 0.00 0.00 0.00 3.21
2437 6311 3.674997 TCTATGTGAGTGCCCAAGAAAC 58.325 45.455 0.00 0.00 0.00 2.78
2498 6373 8.206126 ACCTTTTTGATTTATCCCTTGACATT 57.794 30.769 0.00 0.00 0.00 2.71
2662 6537 4.030216 AGAGGGAGAATGGAAGAAGAGAC 58.970 47.826 0.00 0.00 0.00 3.36
2830 6708 4.396166 CAGGAACAGGTAATTCCATCACAC 59.604 45.833 6.55 0.00 46.98 3.82
2836 6714 6.721318 ACAGGTAATTCCATCACACTGTATT 58.279 36.000 0.00 0.00 36.30 1.89
2852 6732 5.877012 CACTGTATTTTAGTCAGGAGTGCAT 59.123 40.000 0.00 0.00 34.02 3.96
2864 6744 7.215789 AGTCAGGAGTGCATAGAAAATATGAG 58.784 38.462 0.00 0.00 0.00 2.90
2890 6770 8.697507 AAGAAATAGCATATCTTGTTTAGGGG 57.302 34.615 0.00 0.00 32.42 4.79
2910 6790 4.188247 GGGGGTTTGCTGATAGTTTTTC 57.812 45.455 0.00 0.00 0.00 2.29
2920 6801 6.454795 TGCTGATAGTTTTTCAAATGTTCCC 58.545 36.000 0.00 0.00 0.00 3.97
2924 6805 4.400529 AGTTTTTCAAATGTTCCCGCTT 57.599 36.364 0.00 0.00 0.00 4.68
3030 7020 5.126067 TCTCTTTATTGTCTATTGCAGGGC 58.874 41.667 0.00 0.00 0.00 5.19
3066 7056 6.925610 TTCTATGGAGTGCATGTTGATAAC 57.074 37.500 7.49 0.00 0.00 1.89
3150 7140 7.335627 TGGATGTTAGTATTACTCCAAACCAG 58.664 38.462 0.00 0.00 30.15 4.00
3153 7143 9.614792 GATGTTAGTATTACTCCAAACCAGAAT 57.385 33.333 0.00 0.00 0.00 2.40
3257 7247 2.435372 TTGTCCATTGCATACCCCTC 57.565 50.000 0.00 0.00 0.00 4.30
3268 7258 2.303311 GCATACCCCTCTCCCTGTAATC 59.697 54.545 0.00 0.00 0.00 1.75
3280 7270 6.864421 TCTCCCTGTAATCTGGAGTATACAT 58.136 40.000 5.50 0.00 44.87 2.29
3281 7271 7.306013 TCTCCCTGTAATCTGGAGTATACATT 58.694 38.462 5.50 0.00 44.87 2.71
3566 7569 5.741011 TCATGTATGTAGGAACCAAAGGAC 58.259 41.667 0.00 0.00 0.00 3.85
3701 7704 5.122396 AGTTTTCGACAAGGTATTCATCTGC 59.878 40.000 0.00 0.00 0.00 4.26
3719 7722 3.896888 TCTGCCAACCTGTCAAAAATCAT 59.103 39.130 0.00 0.00 0.00 2.45
3740 7744 3.198068 TCTGAACGCTTGAGAATATGCC 58.802 45.455 0.00 0.00 0.00 4.40
3872 7884 1.146041 TGGATGCGCCAGACCATAC 59.854 57.895 4.18 0.00 43.33 2.39
3940 7952 7.220683 CCAGGTAAAACAATGCTGAAATATTCG 59.779 37.037 0.00 0.00 0.00 3.34
3947 7959 4.997905 ATGCTGAAATATTCGGTCATCG 57.002 40.909 1.30 0.00 38.33 3.84
3965 7977 5.116074 GTCATCGTTTCTGCAACAAATCTTG 59.884 40.000 0.00 0.00 34.68 3.02
4079 8091 0.661020 GAACACCAAACCAGACCACG 59.339 55.000 0.00 0.00 0.00 4.94
4112 8124 6.854496 ACGTTTATGAACAAAGTGAAGCTA 57.146 33.333 0.95 0.00 35.44 3.32
4163 8175 4.093743 TGTTCTCCTACTGGAATAGCACA 58.906 43.478 0.00 0.00 42.66 4.57
4250 8262 9.461312 TTCATCCAATACTATTGCAGTTTAGTT 57.539 29.630 10.22 0.00 38.80 2.24
4264 8276 6.015772 TGCAGTTTAGTTATTTGGGAAGGAAC 60.016 38.462 0.00 0.00 0.00 3.62
4318 8330 4.422546 TTTTTGACGAAAAACACCGAGT 57.577 36.364 0.00 0.00 37.48 4.18
4320 8332 0.653636 TGACGAAAAACACCGAGTGC 59.346 50.000 4.23 0.00 36.98 4.40
4378 8390 1.497161 AGTACAGTATCCTGGGGCAC 58.503 55.000 0.00 0.00 43.36 5.01
4382 8394 0.462047 CAGTATCCTGGGGCACGAAC 60.462 60.000 0.00 0.00 34.90 3.95
4393 8405 1.534163 GGGCACGAACCTTAGTGAAAC 59.466 52.381 2.79 0.00 40.56 2.78
4402 8414 5.389516 CGAACCTTAGTGAAACATGTACAGC 60.390 44.000 0.00 0.00 41.43 4.40
4437 8449 3.193479 GCAAAATCTTTAGTCTGGTGGGG 59.807 47.826 0.00 0.00 0.00 4.96
4472 8484 4.699522 AAGCCGGCGTCCTTCCAC 62.700 66.667 23.20 0.00 0.00 4.02
4478 8490 4.309950 GCGTCCTTCCACGGGTGT 62.310 66.667 0.00 0.00 40.29 4.16
4479 8491 2.934570 GCGTCCTTCCACGGGTGTA 61.935 63.158 0.00 0.00 40.29 2.90
4480 8492 1.214589 CGTCCTTCCACGGGTGTAG 59.785 63.158 0.00 0.00 36.07 2.74
4481 8493 1.530013 CGTCCTTCCACGGGTGTAGT 61.530 60.000 0.00 0.00 36.07 2.73
4482 8494 0.683412 GTCCTTCCACGGGTGTAGTT 59.317 55.000 0.00 0.00 0.00 2.24
4483 8495 0.971386 TCCTTCCACGGGTGTAGTTC 59.029 55.000 0.00 0.00 0.00 3.01
4484 8496 0.974383 CCTTCCACGGGTGTAGTTCT 59.026 55.000 0.00 0.00 0.00 3.01
4485 8497 1.346722 CCTTCCACGGGTGTAGTTCTT 59.653 52.381 0.00 0.00 0.00 2.52
4486 8498 2.612221 CCTTCCACGGGTGTAGTTCTTC 60.612 54.545 0.00 0.00 0.00 2.87
4487 8499 1.707106 TCCACGGGTGTAGTTCTTCA 58.293 50.000 0.00 0.00 0.00 3.02
4488 8500 1.616865 TCCACGGGTGTAGTTCTTCAG 59.383 52.381 0.00 0.00 0.00 3.02
4489 8501 1.343465 CCACGGGTGTAGTTCTTCAGT 59.657 52.381 0.00 0.00 0.00 3.41
4490 8502 2.224209 CCACGGGTGTAGTTCTTCAGTT 60.224 50.000 0.00 0.00 0.00 3.16
4491 8503 3.006110 CCACGGGTGTAGTTCTTCAGTTA 59.994 47.826 0.00 0.00 0.00 2.24
4492 8504 4.322499 CCACGGGTGTAGTTCTTCAGTTAT 60.322 45.833 0.00 0.00 0.00 1.89
4493 8505 4.863131 CACGGGTGTAGTTCTTCAGTTATC 59.137 45.833 0.00 0.00 0.00 1.75
4494 8506 4.525487 ACGGGTGTAGTTCTTCAGTTATCA 59.475 41.667 0.00 0.00 0.00 2.15
4495 8507 5.103000 CGGGTGTAGTTCTTCAGTTATCAG 58.897 45.833 0.00 0.00 0.00 2.90
4496 8508 5.105877 CGGGTGTAGTTCTTCAGTTATCAGA 60.106 44.000 0.00 0.00 0.00 3.27
4497 8509 6.100668 GGGTGTAGTTCTTCAGTTATCAGAC 58.899 44.000 0.00 0.00 0.00 3.51
4498 8510 6.295123 GGGTGTAGTTCTTCAGTTATCAGACA 60.295 42.308 0.00 0.00 0.00 3.41
4499 8511 6.809196 GGTGTAGTTCTTCAGTTATCAGACAG 59.191 42.308 0.00 0.00 0.00 3.51
4500 8512 7.309255 GGTGTAGTTCTTCAGTTATCAGACAGA 60.309 40.741 0.00 0.00 0.00 3.41
4501 8513 8.082852 GTGTAGTTCTTCAGTTATCAGACAGAA 58.917 37.037 0.00 0.00 0.00 3.02
4502 8514 8.638873 TGTAGTTCTTCAGTTATCAGACAGAAA 58.361 33.333 0.00 0.00 0.00 2.52
4503 8515 9.646427 GTAGTTCTTCAGTTATCAGACAGAAAT 57.354 33.333 0.00 0.00 0.00 2.17
4504 8516 8.545229 AGTTCTTCAGTTATCAGACAGAAATG 57.455 34.615 0.00 0.00 0.00 2.32
4505 8517 7.605691 AGTTCTTCAGTTATCAGACAGAAATGG 59.394 37.037 0.00 0.00 0.00 3.16
4506 8518 5.877012 TCTTCAGTTATCAGACAGAAATGGC 59.123 40.000 0.00 0.00 0.00 4.40
4507 8519 4.517285 TCAGTTATCAGACAGAAATGGCC 58.483 43.478 0.00 0.00 0.00 5.36
4508 8520 3.629398 CAGTTATCAGACAGAAATGGCCC 59.371 47.826 0.00 0.00 0.00 5.80
4509 8521 3.266772 AGTTATCAGACAGAAATGGCCCA 59.733 43.478 0.00 0.00 0.00 5.36
4510 8522 4.079558 AGTTATCAGACAGAAATGGCCCAT 60.080 41.667 0.00 0.00 0.00 4.00
4513 8525 4.314522 TCAGACAGAAATGGCCCATTTA 57.685 40.909 21.33 1.58 43.05 1.40
4515 8527 6.012337 TCAGACAGAAATGGCCCATTTATA 57.988 37.500 21.33 0.43 43.05 0.98
4525 8537 3.230976 GGCCCATTTATAAGGTCCCAAG 58.769 50.000 0.00 0.00 0.00 3.61
4565 8577 3.247006 CCATGAGGTTGCGTAGTAGTT 57.753 47.619 0.00 0.00 0.00 2.24
4566 8578 4.380841 CCATGAGGTTGCGTAGTAGTTA 57.619 45.455 0.00 0.00 0.00 2.24
4567 8579 4.360563 CCATGAGGTTGCGTAGTAGTTAG 58.639 47.826 0.00 0.00 0.00 2.34
4623 8637 7.572523 TGCTTTTCATTCATCAGTATAAGGG 57.427 36.000 0.00 0.00 0.00 3.95
4630 8644 8.908786 TCATTCATCAGTATAAGGGACAATTC 57.091 34.615 0.00 0.00 0.00 2.17
4641 8655 4.301637 AGGGACAATTCGAACAACAAAC 57.698 40.909 0.00 0.00 0.00 2.93
4654 8668 3.241701 ACAACAAACAGAAACACTTGCG 58.758 40.909 0.00 0.00 0.00 4.85
4658 8672 2.427410 CAGAAACACTTGCGGCGC 60.427 61.111 27.44 27.44 0.00 6.53
4678 8692 3.735240 CGCTGCTTTGTTTATGCAAGAAA 59.265 39.130 0.00 0.00 36.59 2.52
4679 8693 4.386652 CGCTGCTTTGTTTATGCAAGAAAT 59.613 37.500 0.00 0.00 36.59 2.17
4680 8694 5.572511 CGCTGCTTTGTTTATGCAAGAAATA 59.427 36.000 0.00 0.00 36.59 1.40
4681 8695 6.452872 CGCTGCTTTGTTTATGCAAGAAATAC 60.453 38.462 0.00 0.00 36.59 1.89
4682 8696 6.587608 GCTGCTTTGTTTATGCAAGAAATACT 59.412 34.615 0.00 0.00 36.59 2.12
4702 8724 3.821033 ACTTGGCATTTTACTCACTGTCC 59.179 43.478 0.00 0.00 0.00 4.02
4707 8729 5.189736 TGGCATTTTACTCACTGTCCTATCT 59.810 40.000 0.00 0.00 0.00 1.98
4710 8732 7.386299 GGCATTTTACTCACTGTCCTATCTATG 59.614 40.741 0.00 0.00 0.00 2.23
4712 8734 9.254133 CATTTTACTCACTGTCCTATCTATGTG 57.746 37.037 0.00 0.00 0.00 3.21
4791 8813 3.621225 AGCCGCATGAGAGCTGTA 58.379 55.556 10.65 0.00 34.99 2.74
4803 8825 2.675348 GAGAGCTGTATTTGCTGGACAC 59.325 50.000 0.00 0.00 41.30 3.67
4816 8838 2.347490 GACACGTCCCAGCACCAT 59.653 61.111 0.00 0.00 0.00 3.55
4926 8949 2.126071 CGTTGACAGGCGGACGAT 60.126 61.111 0.00 0.00 37.69 3.73
4936 8959 0.105039 GGCGGACGATGAAGGAAGAT 59.895 55.000 0.00 0.00 0.00 2.40
4970 8995 3.508744 AGTTGCTCCTTTGTGTTTGTG 57.491 42.857 0.00 0.00 0.00 3.33
4971 8996 2.825532 AGTTGCTCCTTTGTGTTTGTGT 59.174 40.909 0.00 0.00 0.00 3.72
5019 9045 0.179056 ATGGATTACTCCGTTGGCCG 60.179 55.000 0.00 0.00 45.37 6.13
5021 9047 2.124860 ATTACTCCGTTGGCCGCC 60.125 61.111 1.04 1.04 34.38 6.13
5022 9048 3.692370 ATTACTCCGTTGGCCGCCC 62.692 63.158 7.03 0.00 34.38 6.13
5055 9081 7.148523 GCCTGAGAATAAATTCCTTGCAAAAAG 60.149 37.037 0.00 0.00 37.51 2.27
5065 9091 8.607441 AATTCCTTGCAAAAAGAAGAAATACC 57.393 30.769 0.00 0.00 0.00 2.73
5093 9124 6.572519 TGATAATAAATTTGTCCAAGGCAGC 58.427 36.000 0.00 0.00 0.00 5.25
5119 9150 3.305110 CTTTTGGTATTGTTCGGCACAC 58.695 45.455 0.00 0.00 33.98 3.82
5125 9156 1.686355 ATTGTTCGGCACACTGGAAA 58.314 45.000 0.00 0.00 33.98 3.13
5126 9157 1.021202 TTGTTCGGCACACTGGAAAG 58.979 50.000 0.00 0.00 33.98 2.62
5127 9158 0.179234 TGTTCGGCACACTGGAAAGA 59.821 50.000 0.00 0.00 0.00 2.52
5128 9159 1.305201 GTTCGGCACACTGGAAAGAA 58.695 50.000 0.00 0.00 0.00 2.52
5129 9160 1.880027 GTTCGGCACACTGGAAAGAAT 59.120 47.619 0.00 0.00 0.00 2.40
5130 9161 2.270352 TCGGCACACTGGAAAGAATT 57.730 45.000 0.00 0.00 0.00 2.17
5131 9162 2.582052 TCGGCACACTGGAAAGAATTT 58.418 42.857 0.00 0.00 43.98 1.82
5132 9163 2.955660 TCGGCACACTGGAAAGAATTTT 59.044 40.909 0.00 0.00 39.27 1.82
5133 9164 3.383185 TCGGCACACTGGAAAGAATTTTT 59.617 39.130 0.00 0.00 39.27 1.94
5185 9216 1.484038 TTTTTGAGGCAAGGCACACT 58.516 45.000 0.00 0.00 0.00 3.55
5187 9218 1.108727 TTTGAGGCAAGGCACACTGG 61.109 55.000 0.00 0.00 0.00 4.00
5188 9219 2.674380 GAGGCAAGGCACACTGGG 60.674 66.667 0.00 0.00 0.00 4.45
5195 9233 1.352622 AAGGCACACTGGGAAGTGGA 61.353 55.000 10.40 0.00 43.59 4.02
5207 9245 2.558359 GGGAAGTGGAATCAGGTTGTTG 59.442 50.000 0.00 0.00 0.00 3.33
5210 9248 2.494059 AGTGGAATCAGGTTGTTGACG 58.506 47.619 0.00 0.00 0.00 4.35
5236 9274 3.494223 GGGCCTTTTCTGCTCTAGATCTC 60.494 52.174 0.84 0.00 34.80 2.75
5255 9293 2.229784 CTCTTTGTTGGTGGGCTTCATC 59.770 50.000 0.00 0.00 0.00 2.92
5270 9308 0.895100 TCATCAAACACCAGCCTGCC 60.895 55.000 0.00 0.00 0.00 4.85
5271 9309 0.896940 CATCAAACACCAGCCTGCCT 60.897 55.000 0.00 0.00 0.00 4.75
5273 9311 2.914097 AAACACCAGCCTGCCTGC 60.914 61.111 0.00 0.00 40.36 4.85
5275 9313 3.857309 AACACCAGCCTGCCTGCTC 62.857 63.158 0.00 0.00 40.32 4.26
5280 9318 4.400961 AGCCTGCCTGCTCGGTTC 62.401 66.667 0.00 0.00 36.75 3.62
5284 9322 1.301677 CCTGCCTGCTCGGTTCTTTC 61.302 60.000 0.00 0.00 34.25 2.62
5285 9323 1.301677 CTGCCTGCTCGGTTCTTTCC 61.302 60.000 0.00 0.00 34.25 3.13
5286 9324 1.003233 GCCTGCTCGGTTCTTTCCT 60.003 57.895 0.00 0.00 34.25 3.36
5287 9325 0.606673 GCCTGCTCGGTTCTTTCCTT 60.607 55.000 0.00 0.00 34.25 3.36
5288 9326 1.443802 CCTGCTCGGTTCTTTCCTTC 58.556 55.000 0.00 0.00 0.00 3.46
5289 9327 1.443802 CTGCTCGGTTCTTTCCTTCC 58.556 55.000 0.00 0.00 0.00 3.46
5290 9328 1.002544 CTGCTCGGTTCTTTCCTTCCT 59.997 52.381 0.00 0.00 0.00 3.36
5291 9329 1.420138 TGCTCGGTTCTTTCCTTCCTT 59.580 47.619 0.00 0.00 0.00 3.36
5292 9330 2.158667 TGCTCGGTTCTTTCCTTCCTTT 60.159 45.455 0.00 0.00 0.00 3.11
5293 9331 2.885266 GCTCGGTTCTTTCCTTCCTTTT 59.115 45.455 0.00 0.00 0.00 2.27
5294 9332 3.318275 GCTCGGTTCTTTCCTTCCTTTTT 59.682 43.478 0.00 0.00 0.00 1.94
5295 9333 4.556898 GCTCGGTTCTTTCCTTCCTTTTTC 60.557 45.833 0.00 0.00 0.00 2.29
5296 9334 3.562557 TCGGTTCTTTCCTTCCTTTTTCG 59.437 43.478 0.00 0.00 0.00 3.46
5297 9335 3.314357 CGGTTCTTTCCTTCCTTTTTCGT 59.686 43.478 0.00 0.00 0.00 3.85
5298 9336 4.607955 GGTTCTTTCCTTCCTTTTTCGTG 58.392 43.478 0.00 0.00 0.00 4.35
5299 9337 3.982576 TCTTTCCTTCCTTTTTCGTGC 57.017 42.857 0.00 0.00 0.00 5.34
5300 9338 2.289547 TCTTTCCTTCCTTTTTCGTGCG 59.710 45.455 0.00 0.00 0.00 5.34
5301 9339 1.956297 TTCCTTCCTTTTTCGTGCGA 58.044 45.000 0.00 0.00 0.00 5.10
5302 9340 2.178912 TCCTTCCTTTTTCGTGCGAT 57.821 45.000 0.00 0.00 0.00 4.58
5303 9341 2.500229 TCCTTCCTTTTTCGTGCGATT 58.500 42.857 0.00 0.00 0.00 3.34
5304 9342 2.882137 TCCTTCCTTTTTCGTGCGATTT 59.118 40.909 0.00 0.00 0.00 2.17
5305 9343 2.979813 CCTTCCTTTTTCGTGCGATTTG 59.020 45.455 0.00 0.00 0.00 2.32
5354 9392 1.139734 CAGTCGGACAGATGACGGG 59.860 63.158 11.27 0.00 40.05 5.28
5391 9443 2.588877 CTTGGCCCGCTGTATCCG 60.589 66.667 0.00 0.00 0.00 4.18
5392 9444 3.078196 TTGGCCCGCTGTATCCGA 61.078 61.111 0.00 0.00 0.00 4.55
5393 9445 2.978452 CTTGGCCCGCTGTATCCGAG 62.978 65.000 0.00 0.00 0.00 4.63
5394 9446 4.971125 GGCCCGCTGTATCCGAGC 62.971 72.222 0.00 0.00 0.00 5.03
5395 9447 4.221422 GCCCGCTGTATCCGAGCA 62.221 66.667 0.00 0.00 36.12 4.26
5396 9448 2.028190 CCCGCTGTATCCGAGCAG 59.972 66.667 0.00 0.00 36.12 4.24
5503 9581 0.965439 TTTTACCATGCCACTGCCAC 59.035 50.000 0.00 0.00 36.33 5.01
5504 9582 0.112218 TTTACCATGCCACTGCCACT 59.888 50.000 0.00 0.00 36.33 4.00
5505 9583 0.608856 TTACCATGCCACTGCCACTG 60.609 55.000 0.00 0.00 36.33 3.66
5506 9584 3.755628 CCATGCCACTGCCACTGC 61.756 66.667 0.00 0.00 36.33 4.40
5507 9585 3.755628 CATGCCACTGCCACTGCC 61.756 66.667 0.00 0.00 36.33 4.85
5602 9711 3.066814 GGCCTCCCTGCTGCAAAG 61.067 66.667 3.02 1.62 0.00 2.77
5603 9712 3.066814 GCCTCCCTGCTGCAAAGG 61.067 66.667 16.80 16.80 34.31 3.11
5604 9713 3.066814 CCTCCCTGCTGCAAAGGC 61.067 66.667 12.35 0.00 41.68 4.35
5605 9714 3.437795 CTCCCTGCTGCAAAGGCG 61.438 66.667 12.35 4.10 45.35 5.52
5650 9759 4.029186 CAGAAAGCGCCGCAGCAA 62.029 61.111 13.36 0.00 39.83 3.91
5760 9876 0.700564 TCTCCCCGTACAGGTACACT 59.299 55.000 9.97 0.00 38.74 3.55
5770 9886 1.800805 CAGGTACACTGCACAAGGAG 58.199 55.000 0.00 0.00 40.97 3.69
5771 9887 1.344438 CAGGTACACTGCACAAGGAGA 59.656 52.381 0.00 0.00 40.97 3.71
5772 9888 1.620819 AGGTACACTGCACAAGGAGAG 59.379 52.381 0.00 0.00 36.58 3.20
5773 9889 1.618837 GGTACACTGCACAAGGAGAGA 59.381 52.381 0.00 0.00 36.58 3.10
5774 9890 2.610727 GGTACACTGCACAAGGAGAGAC 60.611 54.545 0.00 0.00 36.58 3.36
5775 9891 0.032678 ACACTGCACAAGGAGAGACG 59.967 55.000 0.00 0.00 36.58 4.18
5776 9892 0.032678 CACTGCACAAGGAGAGACGT 59.967 55.000 0.00 0.00 36.58 4.34
5777 9893 0.753262 ACTGCACAAGGAGAGACGTT 59.247 50.000 0.00 0.00 36.58 3.99
5778 9894 1.269831 ACTGCACAAGGAGAGACGTTC 60.270 52.381 0.00 0.00 36.58 3.95
5779 9895 0.033504 TGCACAAGGAGAGACGTTCC 59.966 55.000 0.00 0.00 34.83 3.62
5780 9896 0.033504 GCACAAGGAGAGACGTTCCA 59.966 55.000 7.49 0.00 37.18 3.53
5781 9897 1.937108 GCACAAGGAGAGACGTTCCAG 60.937 57.143 7.49 2.29 37.18 3.86
5782 9898 0.318762 ACAAGGAGAGACGTTCCAGC 59.681 55.000 7.49 0.00 37.18 4.85
5783 9899 0.734253 CAAGGAGAGACGTTCCAGCG 60.734 60.000 7.49 0.00 37.18 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.203485 AGAAAGATGGTTTGATTGCACTAAAAA 58.797 29.630 0.00 0.00 0.00 1.94
22 23 7.725251 AGAAAGATGGTTTGATTGCACTAAAA 58.275 30.769 0.00 0.00 0.00 1.52
23 24 7.288810 AGAAAGATGGTTTGATTGCACTAAA 57.711 32.000 0.00 0.00 0.00 1.85
24 25 6.899393 AGAAAGATGGTTTGATTGCACTAA 57.101 33.333 0.00 0.00 0.00 2.24
25 26 9.851686 ATATAGAAAGATGGTTTGATTGCACTA 57.148 29.630 0.00 0.00 0.00 2.74
26 27 8.757982 ATATAGAAAGATGGTTTGATTGCACT 57.242 30.769 0.00 0.00 0.00 4.40
70 71 9.378551 ACGTCTCAACTAATTCTAATATGCAAA 57.621 29.630 0.00 0.00 0.00 3.68
71 72 8.817100 CACGTCTCAACTAATTCTAATATGCAA 58.183 33.333 0.00 0.00 0.00 4.08
72 73 7.042725 GCACGTCTCAACTAATTCTAATATGCA 60.043 37.037 0.00 0.00 0.00 3.96
73 74 7.284351 GCACGTCTCAACTAATTCTAATATGC 58.716 38.462 0.00 0.00 0.00 3.14
74 75 7.167635 ACGCACGTCTCAACTAATTCTAATATG 59.832 37.037 0.00 0.00 0.00 1.78
75 76 7.167635 CACGCACGTCTCAACTAATTCTAATAT 59.832 37.037 0.00 0.00 0.00 1.28
76 77 6.471198 CACGCACGTCTCAACTAATTCTAATA 59.529 38.462 0.00 0.00 0.00 0.98
77 78 5.288712 CACGCACGTCTCAACTAATTCTAAT 59.711 40.000 0.00 0.00 0.00 1.73
78 79 4.619760 CACGCACGTCTCAACTAATTCTAA 59.380 41.667 0.00 0.00 0.00 2.10
79 80 4.163552 CACGCACGTCTCAACTAATTCTA 58.836 43.478 0.00 0.00 0.00 2.10
80 81 2.987149 CACGCACGTCTCAACTAATTCT 59.013 45.455 0.00 0.00 0.00 2.40
81 82 2.729882 ACACGCACGTCTCAACTAATTC 59.270 45.455 0.00 0.00 0.00 2.17
82 83 2.750948 ACACGCACGTCTCAACTAATT 58.249 42.857 0.00 0.00 0.00 1.40
83 84 2.433868 ACACGCACGTCTCAACTAAT 57.566 45.000 0.00 0.00 0.00 1.73
84 85 1.855978 CAACACGCACGTCTCAACTAA 59.144 47.619 0.00 0.00 0.00 2.24
85 86 1.483316 CAACACGCACGTCTCAACTA 58.517 50.000 0.00 0.00 0.00 2.24
86 87 1.762222 GCAACACGCACGTCTCAACT 61.762 55.000 0.00 0.00 41.79 3.16
87 88 1.367665 GCAACACGCACGTCTCAAC 60.368 57.895 0.00 0.00 41.79 3.18
88 89 3.010767 GCAACACGCACGTCTCAA 58.989 55.556 0.00 0.00 41.79 3.02
100 101 9.002592 TTTACTAGTAAACTTGCACGTGCAACA 62.003 37.037 43.27 29.30 41.32 3.33
101 102 6.727311 TTTACTAGTAAACTTGCACGTGCAAC 60.727 38.462 43.27 34.70 41.32 4.17
102 103 5.293814 TTTACTAGTAAACTTGCACGTGCAA 59.706 36.000 43.19 43.19 42.49 4.08
103 104 4.809958 TTTACTAGTAAACTTGCACGTGCA 59.190 37.500 37.86 37.86 38.42 4.57
104 105 4.977741 TTACTAGTAAACTTGCACGTGC 57.022 40.909 33.11 33.11 42.50 5.34
115 116 9.688592 CTCTCTTCTTTTCGGTTTACTAGTAAA 57.311 33.333 21.52 21.52 33.10 2.01
116 117 8.854117 ACTCTCTTCTTTTCGGTTTACTAGTAA 58.146 33.333 11.38 11.38 0.00 2.24
117 118 8.401490 ACTCTCTTCTTTTCGGTTTACTAGTA 57.599 34.615 0.00 0.00 0.00 1.82
118 119 7.287512 ACTCTCTTCTTTTCGGTTTACTAGT 57.712 36.000 0.00 0.00 0.00 2.57
119 120 8.513774 ACTACTCTCTTCTTTTCGGTTTACTAG 58.486 37.037 0.00 0.00 0.00 2.57
120 121 8.401490 ACTACTCTCTTCTTTTCGGTTTACTA 57.599 34.615 0.00 0.00 0.00 1.82
121 122 7.287512 ACTACTCTCTTCTTTTCGGTTTACT 57.712 36.000 0.00 0.00 0.00 2.24
122 123 8.296000 AGTACTACTCTCTTCTTTTCGGTTTAC 58.704 37.037 0.00 0.00 0.00 2.01
123 124 8.401490 AGTACTACTCTCTTCTTTTCGGTTTA 57.599 34.615 0.00 0.00 0.00 2.01
124 125 7.287512 AGTACTACTCTCTTCTTTTCGGTTT 57.712 36.000 0.00 0.00 0.00 3.27
125 126 6.897706 AGTACTACTCTCTTCTTTTCGGTT 57.102 37.500 0.00 0.00 0.00 4.44
126 127 7.167535 AGTAGTACTACTCTCTTCTTTTCGGT 58.832 38.462 26.61 2.52 42.30 4.69
127 128 7.614124 AGTAGTACTACTCTCTTCTTTTCGG 57.386 40.000 26.61 0.00 42.30 4.30
128 129 8.330302 GCTAGTAGTACTACTCTCTTCTTTTCG 58.670 40.741 33.47 8.38 44.58 3.46
129 130 9.165035 TGCTAGTAGTACTACTCTCTTCTTTTC 57.835 37.037 33.47 14.35 44.58 2.29
130 131 9.169592 CTGCTAGTAGTACTACTCTCTTCTTTT 57.830 37.037 33.47 12.82 44.58 2.27
131 132 8.323567 ACTGCTAGTAGTACTACTCTCTTCTTT 58.676 37.037 33.47 13.48 44.58 2.52
132 133 7.767198 CACTGCTAGTAGTACTACTCTCTTCTT 59.233 40.741 33.47 14.13 44.58 2.52
133 134 7.093201 ACACTGCTAGTAGTACTACTCTCTTCT 60.093 40.741 33.47 14.79 44.58 2.85
134 135 7.043565 ACACTGCTAGTAGTACTACTCTCTTC 58.956 42.308 33.47 20.13 44.58 2.87
135 136 6.949715 ACACTGCTAGTAGTACTACTCTCTT 58.050 40.000 33.47 16.10 44.58 2.85
136 137 6.549433 ACACTGCTAGTAGTACTACTCTCT 57.451 41.667 33.47 16.44 44.58 3.10
137 138 7.264221 TGTACACTGCTAGTAGTACTACTCTC 58.736 42.308 33.47 25.57 44.58 3.20
138 139 7.180322 TGTACACTGCTAGTAGTACTACTCT 57.820 40.000 33.47 17.44 44.58 3.24
139 140 7.518689 GCATGTACACTGCTAGTAGTACTACTC 60.519 44.444 33.47 22.41 44.58 2.59
140 141 8.065930 TGCATGTACACTGCTAGTAGTACTACT 61.066 40.741 32.39 32.39 41.78 2.57
141 142 6.037940 TGCATGTACACTGCTAGTAGTACTAC 59.962 42.308 23.03 23.03 40.34 2.73
142 143 6.117488 TGCATGTACACTGCTAGTAGTACTA 58.883 40.000 22.31 9.66 40.34 1.82
143 144 4.948004 TGCATGTACACTGCTAGTAGTACT 59.052 41.667 22.31 8.14 40.34 2.73
144 145 5.244785 TGCATGTACACTGCTAGTAGTAC 57.755 43.478 22.31 9.76 40.34 2.73
145 146 5.592688 TCATGCATGTACACTGCTAGTAGTA 59.407 40.000 25.43 0.00 40.34 1.82
146 147 4.402474 TCATGCATGTACACTGCTAGTAGT 59.598 41.667 25.43 7.78 40.34 2.73
147 148 4.936891 TCATGCATGTACACTGCTAGTAG 58.063 43.478 25.43 6.26 40.34 2.57
148 149 4.737649 GCTCATGCATGTACACTGCTAGTA 60.738 45.833 25.43 1.25 40.34 1.82
149 150 3.790091 CTCATGCATGTACACTGCTAGT 58.210 45.455 25.43 11.59 40.34 2.57
150 151 2.543012 GCTCATGCATGTACACTGCTAG 59.457 50.000 25.43 13.29 40.34 3.42
151 152 2.554142 GCTCATGCATGTACACTGCTA 58.446 47.619 25.43 13.77 40.34 3.49
152 153 1.376543 GCTCATGCATGTACACTGCT 58.623 50.000 25.43 11.30 40.34 4.24
153 154 0.027194 CGCTCATGCATGTACACTGC 59.973 55.000 25.43 17.92 39.64 4.40
154 155 0.654160 CCGCTCATGCATGTACACTG 59.346 55.000 25.43 10.90 39.64 3.66
155 156 1.091771 GCCGCTCATGCATGTACACT 61.092 55.000 25.43 0.00 39.64 3.55
156 157 1.091771 AGCCGCTCATGCATGTACAC 61.092 55.000 25.43 12.77 39.64 2.90
157 158 0.811219 GAGCCGCTCATGCATGTACA 60.811 55.000 25.43 6.49 39.64 2.90
181 182 3.844090 GAGCGGCTCCTGGTCTCC 61.844 72.222 19.20 0.00 0.00 3.71
199 4024 1.523154 TTTTTAGCGCCAGCCACAGG 61.523 55.000 2.29 0.00 46.67 4.00
204 4029 0.169009 CTCTGTTTTTAGCGCCAGCC 59.831 55.000 2.29 0.00 46.67 4.85
248 4073 1.144565 CCAGAATCTCGCGCTCTGTG 61.145 60.000 18.75 9.28 35.78 3.66
249 4074 1.140589 CCAGAATCTCGCGCTCTGT 59.859 57.895 18.75 0.00 35.78 3.41
251 4076 2.811101 CCCAGAATCTCGCGCTCT 59.189 61.111 5.56 0.00 0.00 4.09
252 4077 2.964389 GCCCAGAATCTCGCGCTC 60.964 66.667 5.56 0.00 0.00 5.03
256 4081 4.918201 CCCGGCCCAGAATCTCGC 62.918 72.222 0.00 0.00 0.00 5.03
257 4082 4.241555 CCCCGGCCCAGAATCTCG 62.242 72.222 0.00 0.00 0.00 4.04
258 4083 2.768344 TCCCCGGCCCAGAATCTC 60.768 66.667 0.00 0.00 0.00 2.75
259 4084 2.770048 CTCCCCGGCCCAGAATCT 60.770 66.667 0.00 0.00 0.00 2.40
268 4093 2.190578 CCATCTTGTCTCCCCGGC 59.809 66.667 0.00 0.00 0.00 6.13
270 4095 1.522569 GGACCATCTTGTCTCCCCG 59.477 63.158 0.00 0.00 35.54 5.73
369 4197 0.025001 AAAGCACGATTCGCGATTCG 59.975 50.000 37.25 37.25 44.57 3.34
390 4218 1.743958 TGGACGTCTTTTTCGGCAAAA 59.256 42.857 16.46 0.00 38.15 2.44
392 4220 0.941542 CTGGACGTCTTTTTCGGCAA 59.058 50.000 16.46 0.00 38.15 4.52
393 4221 0.882927 CCTGGACGTCTTTTTCGGCA 60.883 55.000 16.46 0.97 38.15 5.69
394 4222 0.883370 ACCTGGACGTCTTTTTCGGC 60.883 55.000 16.46 0.00 35.38 5.54
426 4254 0.903924 TGGATTGACCCCGGTTCGTA 60.904 55.000 0.00 0.00 38.00 3.43
528 4371 0.036306 GTCCGTGACTGGTGGGATTT 59.964 55.000 0.00 0.00 0.00 2.17
529 4372 1.125093 TGTCCGTGACTGGTGGGATT 61.125 55.000 5.77 0.00 33.15 3.01
530 4373 1.535444 TGTCCGTGACTGGTGGGAT 60.535 57.895 5.77 0.00 33.15 3.85
544 4387 2.920912 TCGTGACCCCACCTGTCC 60.921 66.667 0.00 0.00 40.12 4.02
546 4389 3.239253 GGTCGTGACCCCACCTGT 61.239 66.667 7.86 0.00 45.68 4.00
559 4402 0.170561 CAAGTGGGTCTCGTAGGTCG 59.829 60.000 0.00 0.00 41.41 4.79
659 4503 2.285144 GGGTCGGGAGGGGAAGAA 60.285 66.667 0.00 0.00 0.00 2.52
710 4555 4.320456 CGCACTGACAGGTGGGCT 62.320 66.667 7.51 0.00 41.72 5.19
733 4578 2.812011 GACCGGACAAGTTATGCAAAGT 59.188 45.455 9.46 0.00 0.00 2.66
734 4579 3.074412 AGACCGGACAAGTTATGCAAAG 58.926 45.455 9.46 0.00 0.00 2.77
735 4580 3.134574 AGACCGGACAAGTTATGCAAA 57.865 42.857 9.46 0.00 0.00 3.68
736 4581 2.851263 AGACCGGACAAGTTATGCAA 57.149 45.000 9.46 0.00 0.00 4.08
737 4582 2.416296 CGTAGACCGGACAAGTTATGCA 60.416 50.000 9.46 0.00 0.00 3.96
738 4583 2.190981 CGTAGACCGGACAAGTTATGC 58.809 52.381 9.46 0.00 0.00 3.14
778 4630 3.763897 AGGACAAGTAATGGGAAATGTGC 59.236 43.478 0.00 0.00 0.00 4.57
779 4631 4.380867 GCAGGACAAGTAATGGGAAATGTG 60.381 45.833 0.00 0.00 0.00 3.21
783 4635 2.224670 ACGCAGGACAAGTAATGGGAAA 60.225 45.455 7.78 0.00 0.00 3.13
820 4672 2.203351 GCTTTATGGGGGAGGCCG 60.203 66.667 0.00 0.00 0.00 6.13
907 4760 4.456535 AGCGTGAGTGATGTAGAGTAGAT 58.543 43.478 0.00 0.00 0.00 1.98
940 4793 0.250553 CGGTCGGAGCCTAGAGAGAT 60.251 60.000 0.98 0.00 0.00 2.75
955 4808 2.136196 CTAGAGAGATGCGGGCGGTC 62.136 65.000 0.00 0.00 0.00 4.79
956 4809 2.123854 TAGAGAGATGCGGGCGGT 60.124 61.111 0.00 0.00 0.00 5.68
957 4810 2.647875 CTAGAGAGATGCGGGCGG 59.352 66.667 0.00 0.00 0.00 6.13
959 4812 2.153547 GAGCCTAGAGAGATGCGGGC 62.154 65.000 0.00 0.00 39.82 6.13
960 4813 1.531739 GGAGCCTAGAGAGATGCGGG 61.532 65.000 0.00 0.00 0.00 6.13
961 4814 1.861542 CGGAGCCTAGAGAGATGCGG 61.862 65.000 0.00 0.00 0.00 5.69
962 4815 0.886938 TCGGAGCCTAGAGAGATGCG 60.887 60.000 0.00 0.00 0.00 4.73
963 4816 0.596082 GTCGGAGCCTAGAGAGATGC 59.404 60.000 0.00 0.00 0.00 3.91
965 4818 0.250553 CGGTCGGAGCCTAGAGAGAT 60.251 60.000 0.98 0.00 0.00 2.75
967 4820 2.548295 GCGGTCGGAGCCTAGAGAG 61.548 68.421 0.98 0.00 0.00 3.20
968 4821 2.516460 GCGGTCGGAGCCTAGAGA 60.516 66.667 0.98 0.00 0.00 3.10
969 4822 2.517402 AGCGGTCGGAGCCTAGAG 60.517 66.667 0.98 0.00 34.64 2.43
970 4823 2.516460 GAGCGGTCGGAGCCTAGA 60.516 66.667 0.00 0.00 34.64 2.43
971 4824 3.955101 CGAGCGGTCGGAGCCTAG 61.955 72.222 28.25 0.00 42.87 3.02
1192 5048 2.870411 CGAATAAACCCTAAGCCCGAAG 59.130 50.000 0.00 0.00 0.00 3.79
1199 5055 4.201783 CCGCAGAAACGAATAAACCCTAAG 60.202 45.833 0.00 0.00 34.06 2.18
1267 5124 8.934023 ATTTCACTAGACTTAAAATGTTCCCA 57.066 30.769 0.00 0.00 0.00 4.37
1268 5125 9.626045 CAATTTCACTAGACTTAAAATGTTCCC 57.374 33.333 0.00 0.00 0.00 3.97
1273 5130 9.793252 CCCATCAATTTCACTAGACTTAAAATG 57.207 33.333 0.00 0.00 0.00 2.32
1400 5260 2.431782 CTGGGCGATGGGAATTGAAATT 59.568 45.455 0.00 0.00 0.00 1.82
1428 5290 3.131850 TGACAGAGGCAGTCAGTCA 57.868 52.632 8.82 8.82 46.39 3.41
1473 5337 8.466798 GGGCAAACAATTTTATATGTAGACTGT 58.533 33.333 0.00 0.00 0.00 3.55
1539 5403 8.689061 ACGGAACAACTATATCTGTATAACACA 58.311 33.333 0.00 0.00 31.10 3.72
1586 5457 7.881775 TTCAGAGCATCAGATAACAGTAGTA 57.118 36.000 0.00 0.00 37.82 1.82
1594 5467 7.825761 TGTTTCAGAATTCAGAGCATCAGATAA 59.174 33.333 8.44 0.00 37.82 1.75
1620 5493 0.519961 GGCTGCACGGACGTAAAAAT 59.480 50.000 0.50 0.00 0.00 1.82
1625 5498 2.675423 AGAGGCTGCACGGACGTA 60.675 61.111 0.50 0.00 0.00 3.57
1626 5499 4.363990 CAGAGGCTGCACGGACGT 62.364 66.667 0.50 0.00 0.00 4.34
1630 5503 1.004560 TTCTTCAGAGGCTGCACGG 60.005 57.895 0.50 0.00 0.00 4.94
1775 5648 1.813513 AGCTTCCGTGGAACTTGATG 58.186 50.000 0.00 0.00 31.75 3.07
1811 5684 0.034896 TCTTCTGCCCACGAACTTCC 59.965 55.000 0.00 0.00 0.00 3.46
1877 5750 2.561478 TGGCCAAGTAAGTCTGGTTC 57.439 50.000 0.61 0.00 0.00 3.62
2075 5948 0.947244 CCTTTCTCACATATGGCGCC 59.053 55.000 22.73 22.73 0.00 6.53
2108 5981 5.338365 GCAATATTCTCAGCAGTTTCTTGG 58.662 41.667 0.00 0.00 0.00 3.61
2120 5993 3.266510 AGAAGTGCCGCAATATTCTCA 57.733 42.857 9.75 0.00 0.00 3.27
2168 6041 0.413434 TCTCTCCATCCACCCACAGA 59.587 55.000 0.00 0.00 0.00 3.41
2423 6296 1.268079 GCAGAAGTTTCTTGGGCACTC 59.732 52.381 0.00 0.00 34.74 3.51
2437 6311 2.935201 GCAGTACAAGATGGAGCAGAAG 59.065 50.000 0.00 0.00 0.00 2.85
2498 6373 5.466127 ACCTGAAAAATAGGGATAGCCAA 57.534 39.130 0.00 0.00 39.71 4.52
2662 6537 0.384309 TTCTGCTATACCTGCGGTCG 59.616 55.000 3.45 0.00 37.09 4.79
2830 6708 7.492524 TCTATGCACTCCTGACTAAAATACAG 58.507 38.462 0.00 0.00 0.00 2.74
2836 6714 9.330063 CATATTTTCTATGCACTCCTGACTAAA 57.670 33.333 0.00 0.00 0.00 1.85
2864 6744 8.787852 CCCCTAAACAAGATATGCTATTTCTTC 58.212 37.037 0.00 0.00 29.81 2.87
2890 6770 4.864704 TGAAAAACTATCAGCAAACCCC 57.135 40.909 0.00 0.00 0.00 4.95
2895 6775 6.928492 GGGAACATTTGAAAAACTATCAGCAA 59.072 34.615 0.00 0.00 0.00 3.91
2909 6789 5.713792 TTATGAAAAGCGGGAACATTTGA 57.286 34.783 0.00 0.00 0.00 2.69
2910 6790 6.966435 AATTATGAAAAGCGGGAACATTTG 57.034 33.333 0.00 0.00 0.00 2.32
3002 6992 7.554118 CCTGCAATAGACAATAAAGAGAAGGAA 59.446 37.037 0.00 0.00 0.00 3.36
3004 6994 6.261826 CCCTGCAATAGACAATAAAGAGAAGG 59.738 42.308 0.00 0.00 0.00 3.46
3005 6995 6.238593 GCCCTGCAATAGACAATAAAGAGAAG 60.239 42.308 0.00 0.00 0.00 2.85
3030 7020 7.387673 TGCACTCCATAGAATAATTTACCATCG 59.612 37.037 0.00 0.00 0.00 3.84
3150 7140 7.939039 TGATCAACCCCACATAAGATAAGATTC 59.061 37.037 0.00 0.00 0.00 2.52
3153 7143 6.183361 CCTGATCAACCCCACATAAGATAAGA 60.183 42.308 0.00 0.00 0.00 2.10
3509 7510 0.693049 GTGGGGAGAAAAGGAGCTCA 59.307 55.000 17.19 0.00 32.83 4.26
3566 7569 4.759782 AGGTTATGTTCAGGAGATCAACG 58.240 43.478 0.00 0.00 0.00 4.10
3701 7704 5.710513 TCAGATGATTTTTGACAGGTTGG 57.289 39.130 0.00 0.00 0.00 3.77
3719 7722 3.198068 GGCATATTCTCAAGCGTTCAGA 58.802 45.455 0.00 0.00 0.00 3.27
3740 7744 2.671396 GGACAGGTACAAACTATGCACG 59.329 50.000 0.00 0.00 0.00 5.34
3781 7793 1.203052 CCTGTTTAGTGGGCAGCATTG 59.797 52.381 0.00 0.00 0.00 2.82
3872 7884 0.245539 CAAAGCCAACCTCTGCCATG 59.754 55.000 0.00 0.00 0.00 3.66
3940 7952 3.347958 TTTGTTGCAGAAACGATGACC 57.652 42.857 0.00 0.00 42.10 4.02
3965 7977 3.831715 AATACGCACAGAAAAGGAAGC 57.168 42.857 0.00 0.00 0.00 3.86
4013 8025 9.793252 CGGAATAAAGAAAATGTTGATTGAGAT 57.207 29.630 0.00 0.00 0.00 2.75
4037 8049 3.278574 TCCAAGCCAAATCTACAATCGG 58.721 45.455 0.00 0.00 0.00 4.18
4079 8091 4.602995 TGTTCATAAACGTTTCTGCCAAC 58.397 39.130 18.42 17.55 38.28 3.77
4112 8124 6.049955 TCCAAAACCTTCTCGATATCTTGT 57.950 37.500 0.34 0.00 0.00 3.16
4145 8157 2.799917 GCGTGTGCTATTCCAGTAGGAG 60.800 54.545 0.00 0.00 41.15 3.69
4250 8262 4.836175 GTCCAAAAGGTTCCTTCCCAAATA 59.164 41.667 4.48 0.00 0.00 1.40
4264 8276 4.357918 TTCTCTCTGAAGGTCCAAAAGG 57.642 45.455 0.00 0.00 0.00 3.11
4276 8288 7.722949 AAAATAAATGGCCATTTCTCTCTGA 57.277 32.000 40.07 24.68 40.99 3.27
4367 8379 0.912487 TAAGGTTCGTGCCCCAGGAT 60.912 55.000 0.00 0.00 0.00 3.24
4369 8381 1.078426 CTAAGGTTCGTGCCCCAGG 60.078 63.158 0.00 0.00 0.00 4.45
4371 8383 1.122632 TCACTAAGGTTCGTGCCCCA 61.123 55.000 0.00 0.00 0.00 4.96
4378 8390 5.389516 GCTGTACATGTTTCACTAAGGTTCG 60.390 44.000 2.30 0.00 0.00 3.95
4382 8394 5.120830 GTGAGCTGTACATGTTTCACTAAGG 59.879 44.000 2.30 0.00 33.86 2.69
4393 8405 3.935203 CCAACTTAGGTGAGCTGTACATG 59.065 47.826 0.00 0.00 0.00 3.21
4402 8414 5.712152 AAGATTTTGCCAACTTAGGTGAG 57.288 39.130 0.00 0.00 0.00 3.51
4437 8449 0.323360 TTGGTAGGAGCAATGTGGCC 60.323 55.000 0.00 0.00 29.68 5.36
4463 8475 0.683412 AACTACACCCGTGGAAGGAC 59.317 55.000 0.00 0.00 34.19 3.85
4472 8484 5.068234 TGATAACTGAAGAACTACACCCG 57.932 43.478 0.00 0.00 0.00 5.28
4475 8487 7.594714 TCTGTCTGATAACTGAAGAACTACAC 58.405 38.462 0.00 0.00 0.00 2.90
4476 8488 7.761038 TCTGTCTGATAACTGAAGAACTACA 57.239 36.000 0.00 0.00 0.00 2.74
4477 8489 9.646427 ATTTCTGTCTGATAACTGAAGAACTAC 57.354 33.333 0.00 0.00 38.04 2.73
4478 8490 9.645059 CATTTCTGTCTGATAACTGAAGAACTA 57.355 33.333 0.00 0.00 38.04 2.24
4479 8491 7.605691 CCATTTCTGTCTGATAACTGAAGAACT 59.394 37.037 0.00 0.00 38.04 3.01
4480 8492 7.625185 GCCATTTCTGTCTGATAACTGAAGAAC 60.625 40.741 0.00 0.00 38.04 3.01
4481 8493 6.372659 GCCATTTCTGTCTGATAACTGAAGAA 59.627 38.462 0.00 0.00 38.04 2.52
4482 8494 5.877012 GCCATTTCTGTCTGATAACTGAAGA 59.123 40.000 0.00 0.00 38.04 2.87
4483 8495 5.065731 GGCCATTTCTGTCTGATAACTGAAG 59.934 44.000 0.00 0.00 38.04 3.02
4484 8496 4.943705 GGCCATTTCTGTCTGATAACTGAA 59.056 41.667 0.00 0.00 35.93 3.02
4485 8497 4.517285 GGCCATTTCTGTCTGATAACTGA 58.483 43.478 0.00 0.00 0.00 3.41
4486 8498 3.629398 GGGCCATTTCTGTCTGATAACTG 59.371 47.826 4.39 0.00 0.00 3.16
4487 8499 3.266772 TGGGCCATTTCTGTCTGATAACT 59.733 43.478 0.00 0.00 0.00 2.24
4488 8500 3.620488 TGGGCCATTTCTGTCTGATAAC 58.380 45.455 0.00 0.00 0.00 1.89
4489 8501 4.524802 ATGGGCCATTTCTGTCTGATAA 57.475 40.909 14.78 0.00 0.00 1.75
4490 8502 4.524802 AATGGGCCATTTCTGTCTGATA 57.475 40.909 25.94 0.00 28.76 2.15
4491 8503 3.393426 AATGGGCCATTTCTGTCTGAT 57.607 42.857 25.94 0.00 28.76 2.90
4492 8504 2.905415 AATGGGCCATTTCTGTCTGA 57.095 45.000 25.94 0.00 28.76 3.27
4493 8505 6.239120 CCTTATAAATGGGCCATTTCTGTCTG 60.239 42.308 39.88 26.01 42.19 3.51
4494 8506 5.835280 CCTTATAAATGGGCCATTTCTGTCT 59.165 40.000 39.88 22.78 42.19 3.41
4495 8507 5.598417 ACCTTATAAATGGGCCATTTCTGTC 59.402 40.000 39.88 0.00 42.19 3.51
4496 8508 5.528337 ACCTTATAAATGGGCCATTTCTGT 58.472 37.500 39.88 29.12 42.19 3.41
4497 8509 6.089249 GACCTTATAAATGGGCCATTTCTG 57.911 41.667 39.88 27.40 42.19 3.02
4505 8517 3.636764 CACTTGGGACCTTATAAATGGGC 59.363 47.826 0.00 0.00 0.00 5.36
4506 8518 4.867086 ACACTTGGGACCTTATAAATGGG 58.133 43.478 0.00 0.00 0.00 4.00
4507 8519 6.187682 AGAACACTTGGGACCTTATAAATGG 58.812 40.000 0.00 0.00 0.00 3.16
4508 8520 7.148069 GGAAGAACACTTGGGACCTTATAAATG 60.148 40.741 0.00 0.00 0.00 2.32
4509 8521 6.890268 GGAAGAACACTTGGGACCTTATAAAT 59.110 38.462 0.00 0.00 0.00 1.40
4510 8522 6.243148 GGAAGAACACTTGGGACCTTATAAA 58.757 40.000 0.00 0.00 0.00 1.40
4513 8525 3.010250 GGGAAGAACACTTGGGACCTTAT 59.990 47.826 0.00 0.00 0.00 1.73
4515 8527 1.145119 GGGAAGAACACTTGGGACCTT 59.855 52.381 0.00 0.00 0.00 3.50
4525 8537 2.357952 GGTGAACAACAGGGAAGAACAC 59.642 50.000 0.00 0.00 0.00 3.32
4623 8637 6.306837 TGTTTCTGTTTGTTGTTCGAATTGTC 59.693 34.615 0.00 0.00 0.00 3.18
4630 8644 4.201485 GCAAGTGTTTCTGTTTGTTGTTCG 60.201 41.667 0.00 0.00 0.00 3.95
4641 8655 2.427410 GCGCCGCAAGTGTTTCTG 60.427 61.111 3.15 0.00 0.00 3.02
4654 8668 0.388391 TGCATAAACAAAGCAGCGCC 60.388 50.000 2.29 0.00 33.75 6.53
4658 8672 8.430063 CAAGTATTTCTTGCATAAACAAAGCAG 58.570 33.333 0.00 0.00 45.37 4.24
4678 8692 5.648092 GGACAGTGAGTAAAATGCCAAGTAT 59.352 40.000 0.00 0.00 0.00 2.12
4679 8693 5.001232 GGACAGTGAGTAAAATGCCAAGTA 58.999 41.667 0.00 0.00 0.00 2.24
4680 8694 3.821033 GGACAGTGAGTAAAATGCCAAGT 59.179 43.478 0.00 0.00 0.00 3.16
4681 8695 4.074970 AGGACAGTGAGTAAAATGCCAAG 58.925 43.478 0.00 0.00 0.00 3.61
4682 8696 4.098914 AGGACAGTGAGTAAAATGCCAA 57.901 40.909 0.00 0.00 0.00 4.52
4702 8724 6.057533 TCCCTGAAATGCAACACATAGATAG 58.942 40.000 0.00 0.00 38.34 2.08
4707 8729 5.479724 TCAAATCCCTGAAATGCAACACATA 59.520 36.000 0.00 0.00 38.34 2.29
4710 8732 4.240096 CTCAAATCCCTGAAATGCAACAC 58.760 43.478 0.00 0.00 0.00 3.32
4712 8734 3.256558 GCTCAAATCCCTGAAATGCAAC 58.743 45.455 0.00 0.00 0.00 4.17
4878 8900 2.036387 GTTTCCTCCTCCTCTCCTAGC 58.964 57.143 0.00 0.00 0.00 3.42
4923 8946 0.753262 ACCCGGATCTTCCTTCATCG 59.247 55.000 0.73 0.00 33.30 3.84
4926 8949 1.195115 CAGACCCGGATCTTCCTTCA 58.805 55.000 0.73 0.00 33.30 3.02
4936 8959 0.034896 GCAACTTCTTCAGACCCGGA 59.965 55.000 0.73 0.00 0.00 5.14
5019 9045 2.426842 ATTCTCAGGCTAAACAGGGC 57.573 50.000 0.00 0.00 0.00 5.19
5021 9047 6.830838 AGGAATTTATTCTCAGGCTAAACAGG 59.169 38.462 2.77 0.00 37.00 4.00
5022 9048 7.872113 AGGAATTTATTCTCAGGCTAAACAG 57.128 36.000 2.77 0.00 37.00 3.16
5065 9091 8.034215 TGCCTTGGACAAATTTATTATCAAGTG 58.966 33.333 13.09 8.74 0.00 3.16
5093 9124 2.580589 CGAACAATACCAAAAGCACCG 58.419 47.619 0.00 0.00 0.00 4.94
5133 9164 2.955660 CCCAGTGTGCCTGTTCTAAAAA 59.044 45.455 0.00 0.00 39.74 1.94
5134 9165 2.173782 TCCCAGTGTGCCTGTTCTAAAA 59.826 45.455 0.00 0.00 39.74 1.52
5135 9166 1.771854 TCCCAGTGTGCCTGTTCTAAA 59.228 47.619 0.00 0.00 39.74 1.85
5136 9167 1.429930 TCCCAGTGTGCCTGTTCTAA 58.570 50.000 0.00 0.00 39.74 2.10
5137 9168 1.347707 CTTCCCAGTGTGCCTGTTCTA 59.652 52.381 0.00 0.00 39.74 2.10
5138 9169 0.109342 CTTCCCAGTGTGCCTGTTCT 59.891 55.000 0.00 0.00 39.74 3.01
5139 9170 0.179018 ACTTCCCAGTGTGCCTGTTC 60.179 55.000 0.00 0.00 39.74 3.18
5140 9171 0.258774 AACTTCCCAGTGTGCCTGTT 59.741 50.000 0.00 0.00 39.74 3.16
5141 9172 0.258774 AAACTTCCCAGTGTGCCTGT 59.741 50.000 0.00 0.00 39.74 4.00
5142 9173 1.402787 AAAACTTCCCAGTGTGCCTG 58.597 50.000 0.00 0.00 41.15 4.85
5143 9174 2.159179 AAAAACTTCCCAGTGTGCCT 57.841 45.000 0.00 0.00 31.60 4.75
5168 9199 1.108727 CCAGTGTGCCTTGCCTCAAA 61.109 55.000 0.00 0.00 0.00 2.69
5171 9202 2.674380 CCCAGTGTGCCTTGCCTC 60.674 66.667 0.00 0.00 0.00 4.70
5172 9203 2.703675 CTTCCCAGTGTGCCTTGCCT 62.704 60.000 0.00 0.00 0.00 4.75
5173 9204 2.203480 TTCCCAGTGTGCCTTGCC 60.203 61.111 0.00 0.00 0.00 4.52
5175 9206 2.334307 CACTTCCCAGTGTGCCTTG 58.666 57.895 0.00 0.00 44.96 3.61
5176 9207 4.907457 CACTTCCCAGTGTGCCTT 57.093 55.556 0.00 0.00 44.96 4.35
5183 9214 1.747444 ACCTGATTCCACTTCCCAGT 58.253 50.000 0.00 0.00 0.00 4.00
5185 9216 1.780309 ACAACCTGATTCCACTTCCCA 59.220 47.619 0.00 0.00 0.00 4.37
5187 9218 3.253432 GTCAACAACCTGATTCCACTTCC 59.747 47.826 0.00 0.00 0.00 3.46
5188 9219 3.058914 CGTCAACAACCTGATTCCACTTC 60.059 47.826 0.00 0.00 0.00 3.01
5195 9233 2.360801 CCCAAACGTCAACAACCTGATT 59.639 45.455 0.00 0.00 0.00 2.57
5207 9245 0.318699 GCAGAAAAGGCCCAAACGTC 60.319 55.000 0.00 0.00 0.00 4.34
5210 9248 1.332195 AGAGCAGAAAAGGCCCAAAC 58.668 50.000 0.00 0.00 0.00 2.93
5236 9274 1.962807 TGATGAAGCCCACCAACAAAG 59.037 47.619 0.00 0.00 0.00 2.77
5255 9293 3.045142 CAGGCAGGCTGGTGTTTG 58.955 61.111 17.64 0.00 0.00 2.93
5270 9308 1.002544 AGGAAGGAAAGAACCGAGCAG 59.997 52.381 0.00 0.00 34.73 4.24
5271 9309 1.056660 AGGAAGGAAAGAACCGAGCA 58.943 50.000 0.00 0.00 34.73 4.26
5273 9311 4.319549 CGAAAAAGGAAGGAAAGAACCGAG 60.320 45.833 0.00 0.00 34.73 4.63
5275 9313 3.314357 ACGAAAAAGGAAGGAAAGAACCG 59.686 43.478 0.00 0.00 34.73 4.44
5277 9315 4.042398 GCACGAAAAAGGAAGGAAAGAAC 58.958 43.478 0.00 0.00 0.00 3.01
5280 9318 2.289547 TCGCACGAAAAAGGAAGGAAAG 59.710 45.455 0.00 0.00 0.00 2.62
5284 9322 2.979813 CAAATCGCACGAAAAAGGAAGG 59.020 45.455 0.00 0.00 0.00 3.46
5285 9323 3.628017 ACAAATCGCACGAAAAAGGAAG 58.372 40.909 0.00 0.00 0.00 3.46
5286 9324 3.065510 TGACAAATCGCACGAAAAAGGAA 59.934 39.130 0.00 0.00 0.00 3.36
5287 9325 2.614520 TGACAAATCGCACGAAAAAGGA 59.385 40.909 0.00 0.00 0.00 3.36
5288 9326 2.973224 CTGACAAATCGCACGAAAAAGG 59.027 45.455 0.00 0.00 0.00 3.11
5289 9327 3.872354 TCTGACAAATCGCACGAAAAAG 58.128 40.909 0.00 0.00 0.00 2.27
5290 9328 3.848191 GCTCTGACAAATCGCACGAAAAA 60.848 43.478 0.00 0.00 0.00 1.94
5291 9329 2.349438 GCTCTGACAAATCGCACGAAAA 60.349 45.455 0.00 0.00 0.00 2.29
5292 9330 1.194547 GCTCTGACAAATCGCACGAAA 59.805 47.619 0.00 0.00 0.00 3.46
5293 9331 0.790207 GCTCTGACAAATCGCACGAA 59.210 50.000 0.00 0.00 0.00 3.85
5294 9332 1.014044 GGCTCTGACAAATCGCACGA 61.014 55.000 0.00 0.00 0.00 4.35
5295 9333 1.421485 GGCTCTGACAAATCGCACG 59.579 57.895 0.00 0.00 0.00 5.34
5296 9334 0.955428 TGGGCTCTGACAAATCGCAC 60.955 55.000 0.00 0.00 0.00 5.34
5297 9335 0.955428 GTGGGCTCTGACAAATCGCA 60.955 55.000 0.00 0.00 0.00 5.10
5298 9336 0.674895 AGTGGGCTCTGACAAATCGC 60.675 55.000 0.00 0.00 0.00 4.58
5299 9337 1.734465 GAAGTGGGCTCTGACAAATCG 59.266 52.381 0.00 0.00 0.00 3.34
5300 9338 2.087646 GGAAGTGGGCTCTGACAAATC 58.912 52.381 0.00 0.00 0.00 2.17
5301 9339 1.707427 AGGAAGTGGGCTCTGACAAAT 59.293 47.619 0.00 0.00 0.00 2.32
5302 9340 1.072331 GAGGAAGTGGGCTCTGACAAA 59.928 52.381 0.00 0.00 0.00 2.83
5303 9341 0.687354 GAGGAAGTGGGCTCTGACAA 59.313 55.000 0.00 0.00 0.00 3.18
5304 9342 1.536073 CGAGGAAGTGGGCTCTGACA 61.536 60.000 0.00 0.00 0.00 3.58
5305 9343 1.216710 CGAGGAAGTGGGCTCTGAC 59.783 63.158 0.00 0.00 0.00 3.51
5354 9392 1.002366 CGGCAACTGTCATGCTCTAC 58.998 55.000 4.64 0.00 43.34 2.59
5586 9695 3.066814 CCTTTGCAGCAGGGAGGC 61.067 66.667 10.07 0.00 0.00 4.70
5587 9696 3.066814 GCCTTTGCAGCAGGGAGG 61.067 66.667 17.55 15.85 37.47 4.30
5588 9697 3.437795 CGCCTTTGCAGCAGGGAG 61.438 66.667 17.55 11.83 37.32 4.30
5716 9832 2.821366 GGATCTGGTGCTGCCGTG 60.821 66.667 0.00 0.00 41.21 4.94
5717 9833 4.457496 CGGATCTGGTGCTGCCGT 62.457 66.667 0.00 0.00 41.21 5.68
5760 9876 0.033504 GGAACGTCTCTCCTTGTGCA 59.966 55.000 0.00 0.00 0.00 4.57
5764 9880 0.734253 CGCTGGAACGTCTCTCCTTG 60.734 60.000 6.34 1.26 33.77 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.