Multiple sequence alignment - TraesCS1A01G322000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G322000 chr1A 100.000 3317 0 0 1 3317 512664397 512667713 0.000000e+00 6126
1 TraesCS1A01G322000 chr1A 78.408 917 139 28 1229 2104 512865988 512866886 2.910000e-150 542
2 TraesCS1A01G322000 chr1A 77.204 930 166 32 1229 2129 513858506 513857594 4.940000e-138 501
3 TraesCS1A01G322000 chr1B 92.117 1979 114 16 183 2127 561543161 561545131 0.000000e+00 2752
4 TraesCS1A01G322000 chr1B 86.752 1638 106 56 956 2511 561551478 561553086 0.000000e+00 1720
5 TraesCS1A01G322000 chr1B 82.005 828 119 16 1 822 561550365 561551168 0.000000e+00 676
6 TraesCS1A01G322000 chr1B 76.799 931 168 34 1229 2129 563227559 563226647 2.310000e-131 479
7 TraesCS1A01G322000 chr1B 94.175 309 16 2 2758 3066 561553785 561554091 1.390000e-128 470
8 TraesCS1A01G322000 chr1B 91.473 258 19 3 3062 3317 561554216 561554472 5.260000e-93 351
9 TraesCS1A01G322000 chr1B 93.151 219 14 1 2520 2738 561553364 561553581 1.480000e-83 320
10 TraesCS1A01G322000 chr1D 91.422 1224 48 10 954 2127 415299169 415300385 0.000000e+00 1626
11 TraesCS1A01G322000 chr1D 91.004 956 78 5 1 953 415298189 415299139 0.000000e+00 1282
12 TraesCS1A01G322000 chr1D 92.044 729 39 9 2355 3066 415300596 415301322 0.000000e+00 1007
13 TraesCS1A01G322000 chr1D 76.981 934 165 37 1229 2128 416591692 416590775 3.850000e-134 488
14 TraesCS1A01G322000 chr1D 92.636 258 17 2 3062 3317 415301442 415301699 1.450000e-98 370
15 TraesCS1A01G322000 chr7D 79.565 920 138 29 1229 2126 114584293 114585184 2.190000e-171 612
16 TraesCS1A01G322000 chr7A 78.402 926 150 32 1229 2126 119510190 119511093 1.040000e-154 556
17 TraesCS1A01G322000 chr7B 77.718 929 153 35 1229 2127 74091087 74091991 1.360000e-143 520
18 TraesCS1A01G322000 chr5A 94.872 78 4 0 3062 3139 621762489 621762566 4.490000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G322000 chr1A 512664397 512667713 3316 False 6126.00 6126 100.0000 1 3317 1 chr1A.!!$F1 3316
1 TraesCS1A01G322000 chr1A 512865988 512866886 898 False 542.00 542 78.4080 1229 2104 1 chr1A.!!$F2 875
2 TraesCS1A01G322000 chr1A 513857594 513858506 912 True 501.00 501 77.2040 1229 2129 1 chr1A.!!$R1 900
3 TraesCS1A01G322000 chr1B 561543161 561545131 1970 False 2752.00 2752 92.1170 183 2127 1 chr1B.!!$F1 1944
4 TraesCS1A01G322000 chr1B 561550365 561554472 4107 False 707.40 1720 89.5112 1 3317 5 chr1B.!!$F2 3316
5 TraesCS1A01G322000 chr1B 563226647 563227559 912 True 479.00 479 76.7990 1229 2129 1 chr1B.!!$R1 900
6 TraesCS1A01G322000 chr1D 415298189 415301699 3510 False 1071.25 1626 91.7765 1 3317 4 chr1D.!!$F1 3316
7 TraesCS1A01G322000 chr1D 416590775 416591692 917 True 488.00 488 76.9810 1229 2128 1 chr1D.!!$R1 899
8 TraesCS1A01G322000 chr7D 114584293 114585184 891 False 612.00 612 79.5650 1229 2126 1 chr7D.!!$F1 897
9 TraesCS1A01G322000 chr7A 119510190 119511093 903 False 556.00 556 78.4020 1229 2126 1 chr7A.!!$F1 897
10 TraesCS1A01G322000 chr7B 74091087 74091991 904 False 520.00 520 77.7180 1229 2127 1 chr7B.!!$F1 898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 257 1.476488 TCGCTGAAGACATTCCGATGA 59.524 47.619 0.0 0.0 36.73 2.92 F
1115 1393 0.605589 AACTCACTTCCCGCTCTCTG 59.394 55.000 0.0 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1155 1437 0.106519 GAGGTGGGGATTGACCATGG 60.107 60.0 11.19 11.19 40.70 3.66 R
2517 2974 0.108774 TTACCCACGGTTGTGCATCA 59.891 50.0 0.00 0.00 45.04 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.120321 ACATGTTCGCTAGGTTCAACA 57.880 42.857 0.00 0.00 33.42 3.33
67 68 5.178623 TGTTCGCTAGGTTCAACAGTAAATG 59.821 40.000 0.00 0.00 0.00 2.32
104 105 7.506114 TCTTCAAAGTAACTACCAACATGAGT 58.494 34.615 0.00 0.00 0.00 3.41
119 120 9.383519 ACCAACATGAGTAGTGTCATTTATAAG 57.616 33.333 0.00 0.00 34.81 1.73
145 146 9.906660 GAACAATATTTGGTTAGAACATCAACA 57.093 29.630 0.00 0.00 34.12 3.33
157 158 8.988934 GTTAGAACATCAACAGTCTCAACATAA 58.011 33.333 0.00 0.00 0.00 1.90
158 159 9.725019 TTAGAACATCAACAGTCTCAACATAAT 57.275 29.630 0.00 0.00 0.00 1.28
185 186 5.010922 ACAACAACACATGCCTCAACAATAT 59.989 36.000 0.00 0.00 0.00 1.28
188 189 4.724074 ACACATGCCTCAACAATATTGG 57.276 40.909 19.37 2.51 0.00 3.16
231 234 7.218228 TGCTCATTCAACAACAATCTAACAT 57.782 32.000 0.00 0.00 0.00 2.71
250 253 1.926561 TCATCGCTGAAGACATTCCG 58.073 50.000 0.00 0.00 34.28 4.30
254 257 1.476488 TCGCTGAAGACATTCCGATGA 59.524 47.619 0.00 0.00 36.73 2.92
292 295 3.439857 TTACATCTTCTTGCCCAAGCT 57.560 42.857 3.18 0.00 40.80 3.74
307 310 4.036852 GCCCAAGCTAATCATCCTTTACAC 59.963 45.833 0.00 0.00 35.50 2.90
331 334 6.049790 CGACCTTTAATCTTAGGAAGGGAAG 58.950 44.000 6.02 0.00 42.30 3.46
381 384 2.355756 CGCAGATCCACCAACATTAAGG 59.644 50.000 0.00 0.00 0.00 2.69
397 400 2.434359 GGAAGCGACCACCTTCCG 60.434 66.667 4.60 0.00 46.20 4.30
425 428 8.924691 CACAAACTTCTCTTTGAAATGAAAACA 58.075 29.630 0.00 0.00 35.46 2.83
480 483 9.530633 CTTGTCTATATCCTAGTACCACAAAAC 57.469 37.037 0.00 0.00 0.00 2.43
481 484 8.598202 TGTCTATATCCTAGTACCACAAAACA 57.402 34.615 0.00 0.00 0.00 2.83
561 568 9.136323 AGAGACAAAGTCAAACCTTTAAATCAT 57.864 29.630 0.00 0.00 34.60 2.45
564 571 7.936584 ACAAAGTCAAACCTTTAAATCATCGA 58.063 30.769 0.00 0.00 33.00 3.59
579 586 4.011058 TCATCGACATGTGTGTAGTACG 57.989 45.455 1.15 0.00 39.09 3.67
612 619 4.697756 TTGGTTGCTCTCGGCCGG 62.698 66.667 27.83 16.54 40.92 6.13
751 758 1.548986 GAATGCCGAAATTTCAGCCG 58.451 50.000 20.82 6.94 29.62 5.52
846 859 5.763698 TGTATGTGTTGATGAAACCGGTTTA 59.236 36.000 31.70 19.60 38.06 2.01
1014 1262 7.177568 TGGTAATTAAGCACTTCTGCCATTTTA 59.822 33.333 0.00 0.00 45.53 1.52
1095 1373 3.386726 TGTTTCTTTCCTCCTTCGAGTCA 59.613 43.478 0.00 0.00 33.93 3.41
1098 1376 3.991367 TCTTTCCTCCTTCGAGTCAAAC 58.009 45.455 0.00 0.00 33.93 2.93
1113 1391 1.000955 TCAAACTCACTTCCCGCTCTC 59.999 52.381 0.00 0.00 0.00 3.20
1115 1393 0.605589 AACTCACTTCCCGCTCTCTG 59.394 55.000 0.00 0.00 0.00 3.35
1121 1403 1.208293 ACTTCCCGCTCTCTGGAATTC 59.792 52.381 0.00 0.00 39.79 2.17
1123 1405 0.826715 TCCCGCTCTCTGGAATTCAG 59.173 55.000 7.93 3.37 44.68 3.02
1174 1461 0.106519 CCATGGTCAATCCCCACCTC 60.107 60.000 2.57 0.00 34.07 3.85
1552 1907 0.905357 AGCTGCACTATCTCCGGTTT 59.095 50.000 0.00 0.00 0.00 3.27
1746 2101 2.678580 TGACGTCGGCATCCTCCA 60.679 61.111 11.62 0.00 0.00 3.86
2197 2585 9.071276 GGAGCATTCTTTATCAGATTTATTCCA 57.929 33.333 0.00 0.00 0.00 3.53
2301 2704 9.731819 GATTCATGAATTATTATGCCTGCTATG 57.268 33.333 21.57 0.00 0.00 2.23
2302 2705 8.640063 TTCATGAATTATTATGCCTGCTATGT 57.360 30.769 3.38 0.00 0.00 2.29
2303 2706 9.737844 TTCATGAATTATTATGCCTGCTATGTA 57.262 29.630 3.38 0.00 0.00 2.29
2329 2762 6.977213 TGTTGTAAGAAATTCCTGGCTTTAC 58.023 36.000 0.00 0.00 0.00 2.01
2355 2788 6.153851 TCAATGGAGAAATGCATGTTGAGATT 59.846 34.615 0.00 0.00 0.00 2.40
2402 2858 4.771590 CAAGGAGCATTGCAGTTTAAGA 57.228 40.909 11.91 0.00 0.00 2.10
2444 2901 2.540265 AGCTCTGGATGAATAAGCGG 57.460 50.000 0.00 0.00 38.01 5.52
2475 2932 2.537560 CGGGCGAGCATCATGTTCC 61.538 63.158 0.00 0.00 33.17 3.62
2488 2945 2.158623 TCATGTTCCAAGCCTGTCAGTT 60.159 45.455 0.00 0.00 0.00 3.16
2511 2968 6.701145 TTCACCTTAGTTTGCAACATTACA 57.299 33.333 0.00 0.00 0.00 2.41
2512 2969 6.892658 TCACCTTAGTTTGCAACATTACAT 57.107 33.333 0.00 0.00 0.00 2.29
2513 2970 7.987750 TCACCTTAGTTTGCAACATTACATA 57.012 32.000 0.00 0.00 0.00 2.29
2515 2972 7.445707 TCACCTTAGTTTGCAACATTACATACA 59.554 33.333 0.00 0.00 0.00 2.29
2517 2974 7.447238 ACCTTAGTTTGCAACATTACATACACT 59.553 33.333 0.00 0.00 0.00 3.55
2531 3257 1.507562 TACACTGATGCACAACCGTG 58.492 50.000 0.00 0.00 46.56 4.94
2536 3262 0.108774 TGATGCACAACCGTGGGTAA 59.891 50.000 0.00 0.00 43.81 2.85
2539 3265 1.240256 TGCACAACCGTGGGTAAATC 58.760 50.000 0.00 0.00 43.81 2.17
2553 3279 2.019984 GTAAATCTGCAGCCCTGGAAG 58.980 52.381 9.47 0.00 0.00 3.46
2573 3299 8.856153 TGGAAGCATACAAAGTAAGAATGTAA 57.144 30.769 0.00 0.00 33.63 2.41
2587 3313 8.714906 AGTAAGAATGTAAACATATACAGCCCT 58.285 33.333 0.00 0.00 39.04 5.19
2760 3673 8.816640 ATTTTCTTCCATACAACATGAACAAC 57.183 30.769 0.00 0.00 0.00 3.32
2795 3708 8.415950 TTCCAAGCAAAACCTTAATCTCAATA 57.584 30.769 0.00 0.00 0.00 1.90
2815 3728 0.179040 GAAGGTGGTCCGTGGTGAAA 60.179 55.000 0.00 0.00 39.05 2.69
2821 3734 2.424246 GTGGTCCGTGGTGAAAAAGAAA 59.576 45.455 0.00 0.00 0.00 2.52
2932 3846 1.480545 TCACGGATGATATATGGCCCG 59.519 52.381 0.00 12.19 42.30 6.13
2936 3850 2.292267 GGATGATATATGGCCCGCTTG 58.708 52.381 0.00 0.00 0.00 4.01
2977 3891 2.563620 TCTAAACATGTGACCTGCCGTA 59.436 45.455 0.00 0.00 0.00 4.02
3002 3916 6.509418 AAAATACTTGCCATGAACGTATGT 57.491 33.333 0.00 0.00 0.00 2.29
3039 3954 2.879103 TCATTGTTCTCCCAACCTCC 57.121 50.000 0.00 0.00 0.00 4.30
3084 4128 6.166982 ACATTTACAGTTGAGCTAGAACTCC 58.833 40.000 7.50 0.00 35.72 3.85
3191 4236 5.639506 GCAACATTACATACACTGAGACACT 59.360 40.000 0.00 0.00 0.00 3.55
3220 4265 2.682856 CAACGGTGGCTATATTTGCAGT 59.317 45.455 0.00 0.00 0.00 4.40
3288 4334 7.701539 TGCTAAAATCTAAGCTCCAAATTCA 57.298 32.000 0.00 0.00 39.53 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.880490 TGTTGAACCTAGCGAACATGTTT 59.120 39.130 13.36 0.00 0.00 2.83
44 45 5.178809 ACATTTACTGTTGAACCTAGCGAAC 59.821 40.000 0.00 0.00 32.90 3.95
48 49 6.171213 AGGTACATTTACTGTTGAACCTAGC 58.829 40.000 0.00 0.00 40.86 3.42
60 61 8.431910 TTGAAGAGGAGTTAGGTACATTTACT 57.568 34.615 0.00 0.00 0.00 2.24
67 68 7.894708 AGTTACTTTGAAGAGGAGTTAGGTAC 58.105 38.462 0.00 0.00 0.00 3.34
119 120 9.906660 TGTTGATGTTCTAACCAAATATTGTTC 57.093 29.630 0.00 0.00 0.00 3.18
131 132 6.844696 TGTTGAGACTGTTGATGTTCTAAC 57.155 37.500 0.00 0.00 0.00 2.34
144 145 6.073819 TGTTGTTGTCGATTATGTTGAGACTG 60.074 38.462 0.00 0.00 33.40 3.51
145 146 5.989168 TGTTGTTGTCGATTATGTTGAGACT 59.011 36.000 0.00 0.00 33.40 3.24
157 158 1.806542 GAGGCATGTGTTGTTGTCGAT 59.193 47.619 0.00 0.00 0.00 3.59
158 159 1.225855 GAGGCATGTGTTGTTGTCGA 58.774 50.000 0.00 0.00 0.00 4.20
185 186 1.669760 GTCGGTTGATGTCCGCCAA 60.670 57.895 0.00 0.00 46.49 4.52
188 189 0.802494 ATTTGTCGGTTGATGTCCGC 59.198 50.000 0.00 0.00 46.49 5.54
231 234 1.476488 TCGGAATGTCTTCAGCGATGA 59.524 47.619 0.00 0.00 32.70 2.92
292 295 9.321562 GATTAAAGGTCGTGTAAAGGATGATTA 57.678 33.333 0.00 0.00 0.00 1.75
307 310 5.609533 TCCCTTCCTAAGATTAAAGGTCG 57.390 43.478 0.00 0.00 37.22 4.79
331 334 1.819903 AGAAGTAGACCGAGACTTGGC 59.180 52.381 8.84 2.07 36.04 4.52
381 384 1.737008 GTCGGAAGGTGGTCGCTTC 60.737 63.158 0.00 0.00 0.00 3.86
397 400 8.687824 TTTCATTTCAAAGAGAAGTTTGTGTC 57.312 30.769 0.00 0.00 38.38 3.67
425 428 6.186420 ACCCAAAATAGTGCCTTGAAATTT 57.814 33.333 0.00 0.00 0.00 1.82
430 433 2.109128 TGGACCCAAAATAGTGCCTTGA 59.891 45.455 0.00 0.00 0.00 3.02
480 483 1.805120 CGGTTCCGTGCCCTAAGTATG 60.805 57.143 2.82 0.00 0.00 2.39
481 484 0.462789 CGGTTCCGTGCCCTAAGTAT 59.537 55.000 2.82 0.00 0.00 2.12
561 568 2.425539 TCCGTACTACACACATGTCGA 58.574 47.619 0.00 0.00 40.48 4.20
564 571 2.829720 ACCATCCGTACTACACACATGT 59.170 45.455 0.00 0.00 43.30 3.21
579 586 2.316108 ACCAAGGTCAACAAACCATCC 58.684 47.619 0.00 0.00 42.12 3.51
668 675 1.959226 GGCTTCAACTTCGCGGTGA 60.959 57.895 6.13 2.15 0.00 4.02
738 745 1.154035 GGTGCCGGCTGAAATTTCG 60.154 57.895 29.70 9.21 0.00 3.46
846 859 3.944055 AGATCTTATCGCGGCATAGTT 57.056 42.857 6.13 0.00 0.00 2.24
1095 1373 1.001406 CAGAGAGCGGGAAGTGAGTTT 59.999 52.381 0.00 0.00 0.00 2.66
1098 1376 0.967887 TCCAGAGAGCGGGAAGTGAG 60.968 60.000 0.00 0.00 35.34 3.51
1113 1391 0.250234 TGGACTCGCCTGAATTCCAG 59.750 55.000 2.27 0.71 42.55 3.86
1115 1393 2.910688 TATGGACTCGCCTGAATTCC 57.089 50.000 2.27 0.00 37.63 3.01
1121 1403 1.017387 GCCTTTTATGGACTCGCCTG 58.983 55.000 0.00 0.00 37.63 4.85
1123 1405 0.461339 TCGCCTTTTATGGACTCGCC 60.461 55.000 0.00 0.00 37.10 5.54
1155 1437 0.106519 GAGGTGGGGATTGACCATGG 60.107 60.000 11.19 11.19 40.70 3.66
1160 1442 2.511600 CGCGAGGTGGGGATTGAC 60.512 66.667 0.00 0.00 0.00 3.18
1237 1565 4.373116 GGCACTTCGACCTCGCCA 62.373 66.667 8.94 0.00 42.50 5.69
1806 2161 4.559063 CGGGCCATGGCTCCTCTG 62.559 72.222 34.70 19.69 38.65 3.35
2098 2486 1.982395 TTCATCCGGAGCCGACAGT 60.982 57.895 11.34 0.00 42.83 3.55
2195 2583 4.947645 TGCAGTCCTTCAAAGAAAATTGG 58.052 39.130 0.00 0.00 0.00 3.16
2197 2585 7.059202 AGAATGCAGTCCTTCAAAGAAAATT 57.941 32.000 11.14 0.00 0.00 1.82
2198 2586 6.661304 AGAATGCAGTCCTTCAAAGAAAAT 57.339 33.333 11.14 0.00 0.00 1.82
2203 2593 4.758674 TCTGAAGAATGCAGTCCTTCAAAG 59.241 41.667 21.01 14.47 44.37 2.77
2299 2702 7.397192 AGCCAGGAATTTCTTACAACATTACAT 59.603 33.333 0.00 0.00 0.00 2.29
2301 2704 7.158099 AGCCAGGAATTTCTTACAACATTAC 57.842 36.000 0.00 0.00 0.00 1.89
2302 2705 7.775053 AAGCCAGGAATTTCTTACAACATTA 57.225 32.000 0.00 0.00 0.00 1.90
2303 2706 6.670695 AAGCCAGGAATTTCTTACAACATT 57.329 33.333 0.00 0.00 0.00 2.71
2306 2709 7.040686 TGAGTAAAGCCAGGAATTTCTTACAAC 60.041 37.037 0.00 0.00 0.00 3.32
2329 2762 5.124936 TCTCAACATGCATTTCTCCATTGAG 59.875 40.000 0.00 8.16 40.17 3.02
2360 2815 7.014134 TCCTTGCATCATCTTCACAAAAGTAAA 59.986 33.333 0.00 0.00 0.00 2.01
2367 2822 2.751259 GCTCCTTGCATCATCTTCACAA 59.249 45.455 0.00 0.00 42.31 3.33
2475 2932 1.972872 AGGTGAAACTGACAGGCTTG 58.027 50.000 7.51 0.00 36.74 4.01
2511 2968 2.076100 CACGGTTGTGCATCAGTGTAT 58.924 47.619 0.00 0.00 39.67 2.29
2512 2969 1.507562 CACGGTTGTGCATCAGTGTA 58.492 50.000 0.00 0.00 39.67 2.90
2513 2970 1.165907 CCACGGTTGTGCATCAGTGT 61.166 55.000 14.33 0.21 45.04 3.55
2515 2972 1.600636 CCCACGGTTGTGCATCAGT 60.601 57.895 0.00 0.00 45.04 3.41
2517 2974 0.108774 TTACCCACGGTTGTGCATCA 59.891 50.000 0.00 0.00 45.04 3.07
2531 3257 0.753111 CCAGGGCTGCAGATTTACCC 60.753 60.000 20.43 18.01 41.17 3.69
2536 3262 1.379576 GCTTCCAGGGCTGCAGATT 60.380 57.895 20.43 0.00 0.00 2.40
2539 3265 1.099879 GTATGCTTCCAGGGCTGCAG 61.100 60.000 10.11 10.11 38.87 4.41
2587 3313 8.719560 TTTACGGCACATGTAATAGATTAACA 57.280 30.769 0.00 0.00 0.00 2.41
2760 3673 1.243342 TTGCTTGGAAGATGGGCACG 61.243 55.000 0.00 0.00 32.47 5.34
2795 3708 1.052124 TTCACCACGGACCACCTTCT 61.052 55.000 0.00 0.00 0.00 2.85
2815 3728 5.232838 CGAAGCTTCAAGCACATTTTTCTTT 59.767 36.000 25.47 0.00 45.56 2.52
2821 3734 3.988379 TTCGAAGCTTCAAGCACATTT 57.012 38.095 25.47 0.00 45.56 2.32
2932 3846 3.879295 TGATTGCTAAGCCTGATACAAGC 59.121 43.478 0.00 0.00 0.00 4.01
2936 3850 7.969536 TTAGAATGATTGCTAAGCCTGATAC 57.030 36.000 0.00 0.00 0.00 2.24
3018 3932 3.140144 AGGAGGTTGGGAGAACAATGAAA 59.860 43.478 0.00 0.00 32.24 2.69
3063 4107 4.838986 AGGGAGTTCTAGCTCAACTGTAAA 59.161 41.667 14.25 0.00 37.24 2.01
3066 4110 2.564947 CAGGGAGTTCTAGCTCAACTGT 59.435 50.000 14.25 0.00 37.31 3.55
3084 4128 6.884295 TCAACCAGGAAGTTATTACAATCAGG 59.116 38.462 0.00 0.00 0.00 3.86
3138 4182 6.348498 CAGGGTGACACTGACATGATTATTA 58.652 40.000 9.76 0.00 38.20 0.98
3141 4185 3.055167 CCAGGGTGACACTGACATGATTA 60.055 47.826 17.95 0.00 38.20 1.75
3191 4236 0.250510 TAGCCACCGTTGTGCATTCA 60.251 50.000 0.00 0.00 41.35 2.57
3220 4265 6.893554 TCTTAGTACTTAGTATGTTGCCAGGA 59.106 38.462 0.00 0.00 0.00 3.86
3263 4308 8.028938 GTGAATTTGGAGCTTAGATTTTAGCAA 58.971 33.333 0.00 0.00 39.85 3.91
3265 4310 7.766283 AGTGAATTTGGAGCTTAGATTTTAGC 58.234 34.615 0.00 0.00 37.66 3.09
3266 4311 9.565213 CAAGTGAATTTGGAGCTTAGATTTTAG 57.435 33.333 0.00 0.00 0.00 1.85
3268 4313 8.181904 TCAAGTGAATTTGGAGCTTAGATTTT 57.818 30.769 0.00 0.00 0.00 1.82
3288 4334 6.758886 GGACATCGAGTGATATTTCTTCAAGT 59.241 38.462 0.00 0.00 32.18 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.