AutoCloner

Multiple sequence alignment - TraesCS1A01G320600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G320600	chr1A	100.000	2954	0	0	1	2954	511147886	511144933	0.000000e+00	5456.0
1	TraesCS1A01G320600	chr1A	96.947	1441	28	9	870	2308	511157869	511159295	0.000000e+00	2403.0
2	TraesCS1A01G320600	chr1A	95.315	1494	34	14	870	2354	511275849	511277315	0.000000e+00	2338.0
3	TraesCS1A01G320600	chr1A	88.533	968	84	11	1025	1975	546316501	546315544	0.000000e+00	1147.0
4	TraesCS1A01G320600	chr1A	87.516	793	43	13	2093	2835	511218822	511218036	0.000000e+00	865.0
5	TraesCS1A01G320600	chr1A	91.912	544	32	5	1757	2294	511220186	511219649	0.000000e+00	750.0
6	TraesCS1A01G320600	chr1A	85.753	737	42	24	2101	2783	511277722	511278449	0.000000e+00	721.0
7	TraesCS1A01G320600	chr1A	86.760	287	14	12	2346	2608	511277350	511277636	6.190000e-77	298.0
8	TraesCS1A01G320600	chr1A	85.764	288	17	12	2346	2609	511219134	511218847	1.730000e-72	283.0
9	TraesCS1A01G320600	chr1A	97.938	97	2	0	2835	2931	511290960	511291056	5.060000e-38	169.0
10	TraesCS1A01G320600	chr1A	95.876	97	4	0	2835	2931	511218008	511217912	1.100000e-34	158.0
11	TraesCS1A01G320600	chr1A	81.905	105	19	0	255	359	550431520	550431416	4.060000e-14	89.8
12	TraesCS1A01G320600	chr1D	94.585	1459	50	7	900	2353	414441412	414439978	0.000000e+00	2230.0
13	TraesCS1A01G320600	chr1D	94.138	1450	60	10	870	2308	414491969	414493404	0.000000e+00	2183.0
14	TraesCS1A01G320600	chr1D	89.110	955	78	14	1028	1967	451869701	451868758	0.000000e+00	1164.0
15	TraesCS1A01G320600	chr1D	92.293	532	35	4	1	527	414443465	414442935	0.000000e+00	750.0
16	TraesCS1A01G320600	chr1D	94.619	223	11	1	2614	2835	414439413	414439191	7.840000e-91	344.0
17	TraesCS1A01G320600	chr1D	94.313	211	12	0	585	795	414442821	414442611	1.020000e-84	324.0
18	TraesCS1A01G320600	chr1D	85.714	266	14	7	2346	2587	414439946	414439681	2.920000e-65	259.0
19	TraesCS1A01G320600	chr1D	93.617	94	6	0	2838	2931	414439160	414439067	1.100000e-29	141.0
20	TraesCS1A01G320600	chr1D	73.098	368	81	10	7	359	457954533	457954169	6.690000e-22	115.0
21	TraesCS1A01G320600	chr1D	98.214	56	1	0	817	872	414441932	414441877	6.740000e-17	99.0
22	TraesCS1A01G320600	chr1D	97.297	37	1	0	873	909	414441849	414441813	2.460000e-06	63.9
23	TraesCS1A01G320600	chr1B	93.315	1451	77	12	870	2307	559341915	559343358	0.000000e+00	2124.0
24	TraesCS1A01G320600	chr1B	92.522	1471	90	8	870	2332	559569847	559571305	0.000000e+00	2089.0
25	TraesCS1A01G320600	chr1B	92.070	1488	69	12	873	2353	559332063	559330618	0.000000e+00	2049.0
26	TraesCS1A01G320600	chr1B	88.947	950	87	10	1028	1975	621576814	621575881	0.000000e+00	1157.0
27	TraesCS1A01G320600	chr1B	91.606	548	37	5	1	543	537657619	537657076	0.000000e+00	749.0
28	TraesCS1A01G320600	chr1B	85.663	558	34	21	1	542	559333100	559332573	2.000000e-151	545.0
29	TraesCS1A01G320600	chr1B	93.839	211	12	1	585	795	559332486	559332277	1.710000e-82	316.0
30	TraesCS1A01G320600	chr1B	91.244	217	12	3	586	795	537656964	537656748	3.730000e-74	289.0
31	TraesCS1A01G320600	chr1B	87.352	253	10	2	2346	2576	559330586	559330334	1.350000e-68	270.0
32	TraesCS1A01G320600	chr1B	76.064	188	40	3	173	359	628044699	628044516	3.130000e-15	93.5
33	TraesCS1A01G320600	chr1B	91.176	68	5	1	2640	2707	559343816	559343882	1.130000e-14	91.6
34	TraesCS1A01G320600	chr1B	100.000	28	0	0	548	575	537656915	537656888	5.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G320600	chr1A	511144933	511147886	2953	True	5456.0000	5456	100.000000	1	2954	1	chr1A.!!$R1	2953
1	TraesCS1A01G320600	chr1A	511157869	511159295	1426	False	2403.0000	2403	96.947000	870	2308	1	chr1A.!!$F1	1438
2	TraesCS1A01G320600	chr1A	546315544	546316501	957	True	1147.0000	1147	88.533000	1025	1975	1	chr1A.!!$R2	950
3	TraesCS1A01G320600	chr1A	511275849	511278449	2600	False	1119.0000	2338	89.276000	870	2783	3	chr1A.!!$F3	1913
4	TraesCS1A01G320600	chr1A	511217912	511220186	2274	True	514.0000	865	90.267000	1757	2931	4	chr1A.!!$R4	1174
5	TraesCS1A01G320600	chr1D	414491969	414493404	1435	False	2183.0000	2183	94.138000	870	2308	1	chr1D.!!$F1	1438
6	TraesCS1A01G320600	chr1D	451868758	451869701	943	True	1164.0000	1164	89.110000	1028	1967	1	chr1D.!!$R1	939
7	TraesCS1A01G320600	chr1D	414439067	414443465	4398	True	526.3625	2230	93.831500	1	2931	8	chr1D.!!$R3	2930
8	TraesCS1A01G320600	chr1B	559569847	559571305	1458	False	2089.0000	2089	92.522000	870	2332	1	chr1B.!!$F1	1462
9	TraesCS1A01G320600	chr1B	621575881	621576814	933	True	1157.0000	1157	88.947000	1028	1975	1	chr1B.!!$R1	947
10	TraesCS1A01G320600	chr1B	559341915	559343882	1967	False	1107.8000	2124	92.245500	870	2707	2	chr1B.!!$F2	1837
11	TraesCS1A01G320600	chr1B	559330334	559333100	2766	True	795.0000	2049	89.731000	1	2576	4	chr1B.!!$R4	2575
12	TraesCS1A01G320600	chr1B	537656748	537657619	871	True	363.6000	749	94.283333	1	795	3	chr1B.!!$R3	794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
473	487	0.035152	AGATCGATTTGCTGCCACCA	60.035	50.0	0.0	0.0	0.0	4.17	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2196	4461	1.562575	CGTACTTGGCAACCGTGTCC	61.563	60.0	0.0	0.0	0.0	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
50	51	3.263170	TGAAAACATAGTAGGCTGGCTCA	59.737	43.478	7.13	0.00	0.00	4.26
78	79	4.021925	GCAAGAGGGTGAGGCCGT	62.022	66.667	0.00	0.00	38.44	5.68
133	134	1.330779	CGCACGTCGTTGAGAGTGAG	61.331	60.000	0.00	0.81	36.79	3.51
137	138	0.730834	CGTCGTTGAGAGTGAGCAGG	60.731	60.000	0.00	0.00	0.00	4.85
140	141	0.884514	CGTTGAGAGTGAGCAGGAGA	59.115	55.000	0.00	0.00	0.00	3.71
143	144	0.962855	TGAGAGTGAGCAGGAGACCG	60.963	60.000	0.00	0.00	0.00	4.79
145	146	0.540830	AGAGTGAGCAGGAGACCGTT	60.541	55.000	0.00	0.00	0.00	4.44
146	147	0.389166	GAGTGAGCAGGAGACCGTTG	60.389	60.000	0.00	0.00	0.00	4.10
220	231	2.507058	AGATGAATAGCAGCTTGGGTGA	59.493	45.455	0.00	0.00	41.24	4.02
229	240	3.357079	CTTGGGTGACGGTGCTGC	61.357	66.667	0.00	0.00	0.00	5.25
322	333	3.839432	GGTCCGGAAGCGGAGGAG	61.839	72.222	5.23	0.00	38.90	3.69
339	350	2.044946	GGGATTTGACGGGCAGCT	60.045	61.111	0.00	0.00	0.00	4.24
340	351	1.223487	GGGATTTGACGGGCAGCTA	59.777	57.895	0.00	0.00	0.00	3.32
350	361	1.374947	GGGCAGCTACAGGAACACA	59.625	57.895	0.00	0.00	0.00	3.72
455	469	1.547372	CTTGCCATCTTTGTCCCCAAG	59.453	52.381	0.00	0.00	0.00	3.61
460	474	2.092968	CCATCTTTGTCCCCAAGATCGA	60.093	50.000	0.00	0.00	0.00	3.59
473	487	0.035152	AGATCGATTTGCTGCCACCA	60.035	50.000	0.00	0.00	0.00	4.17
483	497	3.383620	TGCTGCCACCAAAAATACAAG	57.616	42.857	0.00	0.00	0.00	3.16
512	526	2.093128	GTGTCAATTGGATAGGACGGGT	60.093	50.000	5.42	0.00	33.04	5.28
513	527	2.169769	TGTCAATTGGATAGGACGGGTC	59.830	50.000	5.42	0.00	33.04	4.46
514	528	2.169769	GTCAATTGGATAGGACGGGTCA	59.830	50.000	5.42	0.00	0.00	4.02
515	529	2.434336	TCAATTGGATAGGACGGGTCAG	59.566	50.000	5.42	0.00	0.00	3.51
516	530	0.759346	ATTGGATAGGACGGGTCAGC	59.241	55.000	0.75	0.00	0.00	4.26
517	531	0.325296	TTGGATAGGACGGGTCAGCT	60.325	55.000	0.75	0.00	0.00	4.24
518	532	1.043116	TGGATAGGACGGGTCAGCTG	61.043	60.000	7.63	7.63	0.00	4.24
521	535	2.238319	ATAGGACGGGTCAGCTGGGA	62.238	60.000	15.13	0.00	0.00	4.37
522	536	2.238319	TAGGACGGGTCAGCTGGGAT	62.238	60.000	15.13	0.00	0.00	3.85
532	546	1.345741	TCAGCTGGGATGATCGATTCC	59.654	52.381	15.13	7.50	0.00	3.01
539	553	2.483876	GGATGATCGATTCCGCAGAAA	58.516	47.619	0.00	0.00	35.09	2.52
542	556	4.023707	GGATGATCGATTCCGCAGAAAAAT	60.024	41.667	0.00	0.00	35.09	1.82
543	557	4.536364	TGATCGATTCCGCAGAAAAATC	57.464	40.909	0.00	0.00	35.09	2.17
545	559	4.271049	TGATCGATTCCGCAGAAAAATCTC	59.729	41.667	0.00	0.00	35.09	2.75
546	560	3.595173	TCGATTCCGCAGAAAAATCTCA	58.405	40.909	0.00	0.00	35.09	3.27
547	561	3.370978	TCGATTCCGCAGAAAAATCTCAC	59.629	43.478	0.00	0.00	35.09	3.51
548	562	3.674423	GATTCCGCAGAAAAATCTCACG	58.326	45.455	0.00	0.00	35.09	4.35
551	565	0.519175	CGCAGAAAAATCTCACGGCG	60.519	55.000	4.80	4.80	37.17	6.46
552	566	0.179189	GCAGAAAAATCTCACGGCGG	60.179	55.000	13.24	0.00	0.00	6.13
553	567	0.179189	CAGAAAAATCTCACGGCGGC	60.179	55.000	13.24	0.00	0.00	6.53
554	568	1.226018	GAAAAATCTCACGGCGGCG	60.226	57.895	31.06	31.06	0.00	6.46
555	569	1.632046	GAAAAATCTCACGGCGGCGA	61.632	55.000	38.93	16.52	0.00	5.54
573	587	3.793144	CGGAAGTGCTTCAGCGGC	61.793	66.667	13.16	0.00	45.83	6.53
575	589	2.738521	GAAGTGCTTCAGCGGCGA	60.739	61.111	12.98	0.00	45.83	5.54
576	590	3.016474	GAAGTGCTTCAGCGGCGAC	62.016	63.158	12.98	1.23	45.83	5.19
588	602	4.014065	GGCGACCGAAGATACTGC	57.986	61.111	0.00	0.00	0.00	4.40
590	604	0.459585	GGCGACCGAAGATACTGCAA	60.460	55.000	0.00	0.00	0.00	4.08
591	605	0.924090	GCGACCGAAGATACTGCAAG	59.076	55.000	0.00	0.00	42.29	4.01
592	606	0.924090	CGACCGAAGATACTGCAAGC	59.076	55.000	0.00	0.00	37.60	4.01
594	608	1.084370	ACCGAAGATACTGCAAGCGC	61.084	55.000	0.00	0.00	37.60	5.92
595	609	1.270968	CGAAGATACTGCAAGCGCG	59.729	57.895	0.00	0.00	42.97	6.86
689	763	2.618241	CTGGAGAAGGATCGAGTGAGAG	59.382	54.545	0.00	0.00	0.00	3.20
795	869	2.445085	ACTGTGGGTGGTGTCGGA	60.445	61.111	0.00	0.00	0.00	4.55
796	870	2.030562	CTGTGGGTGGTGTCGGAC	59.969	66.667	0.00	0.00	0.00	4.79
797	871	2.764547	TGTGGGTGGTGTCGGACA	60.765	61.111	6.76	6.76	0.00	4.02
798	872	2.318519	CTGTGGGTGGTGTCGGACAA	62.319	60.000	13.23	0.00	0.00	3.18
871	1634	0.935196	GTGCAAAACCGAGTCGAACT	59.065	50.000	15.64	0.00	0.00	3.01
956	2139	3.700831	AACCCGTCGCCACAACCAA	62.701	57.895	0.00	0.00	0.00	3.67
957	2140	2.671619	CCCGTCGCCACAACCAAT	60.672	61.111	0.00	0.00	0.00	3.16
958	2141	1.376166	CCCGTCGCCACAACCAATA	60.376	57.895	0.00	0.00	0.00	1.90
2235	5154	8.073355	AGTACGCTACTTGTGAATTATAATGC	57.927	34.615	0.00	0.00	34.86	3.56
2410	5394	8.814931	TGAAACCAAAATGACCAGATTGAATAT	58.185	29.630	0.00	0.00	0.00	1.28
2426	5410	9.125026	AGATTGAATATTGAAATAGGCGACTTT	57.875	29.630	0.00	0.00	43.67	2.66
2428	5412	6.494842	TGAATATTGAAATAGGCGACTTTGC	58.505	36.000	0.00	0.00	43.67	3.68
2626	5970	0.733150	GGAGTAATGAAAGGGCGCAC	59.267	55.000	10.83	5.15	0.00	5.34
2627	5971	0.373716	GAGTAATGAAAGGGCGCACG	59.626	55.000	10.83	0.00	0.00	5.34
2826	6186	2.054799	AGCAAACCCAAGGAGTAGACA	58.945	47.619	0.00	0.00	0.00	3.41
2931	6347	0.110104	GGGATAGATGCCTGCTTGCT	59.890	55.000	0.00	0.00	35.12	3.91
2932	6348	1.521580	GGATAGATGCCTGCTTGCTC	58.478	55.000	0.00	0.00	0.00	4.26
2933	6349	1.521580	GATAGATGCCTGCTTGCTCC	58.478	55.000	0.00	0.00	0.00	4.70
2934	6350	0.250209	ATAGATGCCTGCTTGCTCCG	60.250	55.000	0.00	0.00	0.00	4.63
2935	6351	1.329913	TAGATGCCTGCTTGCTCCGA	61.330	55.000	0.00	0.00	0.00	4.55
2936	6352	1.525535	GATGCCTGCTTGCTCCGAT	60.526	57.895	0.00	0.00	0.00	4.18
2937	6353	1.783031	GATGCCTGCTTGCTCCGATG	61.783	60.000	0.00	0.00	0.00	3.84
2938	6354	2.437359	GCCTGCTTGCTCCGATGT	60.437	61.111	0.00	0.00	0.00	3.06
2939	6355	2.042831	GCCTGCTTGCTCCGATGTT	61.043	57.895	0.00	0.00	0.00	2.71
2940	6356	0.744414	GCCTGCTTGCTCCGATGTTA	60.744	55.000	0.00	0.00	0.00	2.41
2941	6357	1.009829	CCTGCTTGCTCCGATGTTAC	58.990	55.000	0.00	0.00	0.00	2.50
2942	6358	1.009829	CTGCTTGCTCCGATGTTACC	58.990	55.000	0.00	0.00	0.00	2.85
2943	6359	0.323302	TGCTTGCTCCGATGTTACCA	59.677	50.000	0.00	0.00	0.00	3.25
2944	6360	1.271108	TGCTTGCTCCGATGTTACCAA	60.271	47.619	0.00	0.00	0.00	3.67
2945	6361	1.810151	GCTTGCTCCGATGTTACCAAA	59.190	47.619	0.00	0.00	0.00	3.28
2946	6362	2.423538	GCTTGCTCCGATGTTACCAAAT	59.576	45.455	0.00	0.00	0.00	2.32
2947	6363	3.487544	GCTTGCTCCGATGTTACCAAATC	60.488	47.826	0.00	0.00	0.00	2.17
2948	6364	3.342377	TGCTCCGATGTTACCAAATCA	57.658	42.857	0.00	0.00	0.00	2.57
2949	6365	3.884895	TGCTCCGATGTTACCAAATCAT	58.115	40.909	0.00	0.00	0.00	2.45
2950	6366	3.876914	TGCTCCGATGTTACCAAATCATC	59.123	43.478	0.00	0.00	35.87	2.92
2951	6367	3.251004	GCTCCGATGTTACCAAATCATCC	59.749	47.826	0.00	0.00	35.83	3.51
2952	6368	4.450976	CTCCGATGTTACCAAATCATCCA	58.549	43.478	0.00	0.00	35.83	3.41
2953	6369	4.196193	TCCGATGTTACCAAATCATCCAC	58.804	43.478	0.00	0.00	35.83	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	4.010349	AGCCAGCCTACTATGTTTTCAAC	58.990	43.478	0.00	0.00	0.00	3.18
50	51	2.034879	CCTCTTGCATGACGCCGTT	61.035	57.895	0.00	0.00	41.33	4.44
123	124	1.261480	GGTCTCCTGCTCACTCTCAA	58.739	55.000	0.00	0.00	0.00	3.02
124	125	0.962855	CGGTCTCCTGCTCACTCTCA	60.963	60.000	0.00	0.00	0.00	3.27
129	130	2.029844	GCAACGGTCTCCTGCTCAC	61.030	63.158	0.00	0.00	33.20	3.51
133	134	2.527951	ATCAGGCAACGGTCTCCTGC	62.528	60.000	18.41	8.46	45.25	4.85
137	138	4.208632	CCATCAGGCAACGGTCTC	57.791	61.111	0.00	0.00	46.39	3.36
229	240	4.148825	CCAAGGTCGAGGCCGAGG	62.149	72.222	0.00	0.00	46.52	4.63
259	270	2.202492	CCTCCGACGAGTTCTGCG	60.202	66.667	0.00	0.00	33.93	5.18
322	333	1.095807	GTAGCTGCCCGTCAAATCCC	61.096	60.000	0.00	0.00	0.00	3.85
339	350	2.829120	TGATGACGGATGTGTTCCTGTA	59.171	45.455	0.00	0.00	42.99	2.74
340	351	1.623311	TGATGACGGATGTGTTCCTGT	59.377	47.619	0.00	0.00	42.99	4.00
350	361	0.316522	CGGATGAGCTGATGACGGAT	59.683	55.000	0.00	0.00	0.00	4.18
417	431	0.037447	AGCAACAAGAGGAGGAAGGC	59.963	55.000	0.00	0.00	0.00	4.35
455	469	0.810648	TTGGTGGCAGCAAATCGATC	59.189	50.000	28.05	0.00	32.03	3.69
460	474	4.348863	TGTATTTTTGGTGGCAGCAAAT	57.651	36.364	36.34	27.26	43.89	2.32
473	487	1.272212	CACGCAGGGGCTTGTATTTTT	59.728	47.619	0.00	0.00	34.79	1.94
483	497	2.568090	CAATTGACACGCAGGGGC	59.432	61.111	0.00	0.00	0.00	5.80
512	526	1.345741	GGAATCGATCATCCCAGCTGA	59.654	52.381	17.39	0.00	0.00	4.26
513	527	1.805869	GGAATCGATCATCCCAGCTG	58.194	55.000	6.78	6.78	0.00	4.24
514	528	0.319728	CGGAATCGATCATCCCAGCT	59.680	55.000	9.99	0.00	39.00	4.24
515	529	1.294659	GCGGAATCGATCATCCCAGC	61.295	60.000	9.99	5.63	39.00	4.85
516	530	0.033920	TGCGGAATCGATCATCCCAG	59.966	55.000	9.99	0.00	39.00	4.45
517	531	0.033920	CTGCGGAATCGATCATCCCA	59.966	55.000	9.99	8.26	39.00	4.37
518	532	0.318441	TCTGCGGAATCGATCATCCC	59.682	55.000	9.99	4.66	39.00	3.85
521	535	4.818546	AGATTTTTCTGCGGAATCGATCAT	59.181	37.500	9.22	0.00	39.00	2.45
522	536	4.191544	AGATTTTTCTGCGGAATCGATCA	58.808	39.130	9.22	0.00	39.00	2.92
532	546	0.519175	CGCCGTGAGATTTTTCTGCG	60.519	55.000	0.00	0.00	34.52	5.18
539	553	2.813908	GTCGCCGCCGTGAGATTT	60.814	61.111	0.00	0.00	35.54	2.17
551	565	2.357034	TGAAGCACTTCCGTCGCC	60.357	61.111	7.88	0.00	38.77	5.54
552	566	3.016474	GCTGAAGCACTTCCGTCGC	62.016	63.158	7.88	2.47	41.59	5.19
553	567	2.720758	CGCTGAAGCACTTCCGTCG	61.721	63.158	7.88	6.20	42.21	5.12
554	568	2.383527	CCGCTGAAGCACTTCCGTC	61.384	63.158	7.88	0.00	42.21	4.79
555	569	2.357517	CCGCTGAAGCACTTCCGT	60.358	61.111	7.88	0.00	42.21	4.69
557	571	3.793144	CGCCGCTGAAGCACTTCC	61.793	66.667	7.88	0.00	42.21	3.46
558	572	2.738521	TCGCCGCTGAAGCACTTC	60.739	61.111	3.37	3.37	42.21	3.01
559	573	3.044305	GTCGCCGCTGAAGCACTT	61.044	61.111	2.79	0.00	42.21	3.16
573	587	0.924090	GCTTGCAGTATCTTCGGTCG	59.076	55.000	0.00	0.00	0.00	4.79
575	589	1.084370	GCGCTTGCAGTATCTTCGGT	61.084	55.000	0.00	0.00	38.92	4.69
576	590	1.638467	GCGCTTGCAGTATCTTCGG	59.362	57.895	0.00	0.00	38.92	4.30
577	591	1.270968	CGCGCTTGCAGTATCTTCG	59.729	57.895	5.56	0.00	39.07	3.79
580	594	1.519455	GACCGCGCTTGCAGTATCT	60.519	57.895	5.56	0.00	39.07	1.98
689	763	4.823790	TTTCTAAACAAAGAACGAGGGC	57.176	40.909	0.00	0.00	35.25	5.19
715	789	1.927838	GGCTTCGGTCGAGAGATTTTC	59.072	52.381	0.00	0.00	45.19	2.29
795	869	1.192428	GTCCTCCTCGTACCCATTGT	58.808	55.000	0.00	0.00	0.00	2.71
796	870	1.191535	TGTCCTCCTCGTACCCATTG	58.808	55.000	0.00	0.00	0.00	2.82
797	871	1.946984	TTGTCCTCCTCGTACCCATT	58.053	50.000	0.00	0.00	0.00	3.16
798	872	1.762957	CATTGTCCTCCTCGTACCCAT	59.237	52.381	0.00	0.00	0.00	4.00
871	1634	1.405872	ATGGACGCATAGGTCGGTTA	58.594	50.000	0.00	0.00	37.82	2.85
956	2139	0.237235	CGTGTGCGCAGTTTTGGTAT	59.763	50.000	12.22	0.00	0.00	2.73
957	2140	1.644372	CGTGTGCGCAGTTTTGGTA	59.356	52.632	12.22	0.00	0.00	3.25
958	2141	2.407210	CGTGTGCGCAGTTTTGGT	59.593	55.556	12.22	0.00	0.00	3.67
2196	4461	1.562575	CGTACTTGGCAACCGTGTCC	61.563	60.000	0.00	0.00	0.00	4.02
2221	5140	8.969260	AGTTCATGAGAGCATTATAATTCACA	57.031	30.769	0.00	0.00	30.68	3.58
2277	5196	2.472695	TGGGTGAAATCTCGGTGAAG	57.527	50.000	0.00	0.00	0.00	3.02
2410	5394	2.095263	GCAGCAAAGTCGCCTATTTCAA	60.095	45.455	0.00	0.00	0.00	2.69
2426	5410	8.666573	CATATTTTGTTGGATTAAATTGCAGCA	58.333	29.630	0.00	0.00	0.00	4.41
2563	5665	1.228124	CTCCCTGCCACCGTGAAAA	60.228	57.895	0.00	0.00	0.00	2.29
2568	5670	2.610859	AATCCTCCCTGCCACCGT	60.611	61.111	0.00	0.00	0.00	4.83
2609	5770	0.036765	TCGTGCGCCCTTTCATTACT	60.037	50.000	4.18	0.00	0.00	2.24
2610	5771	1.014352	ATCGTGCGCCCTTTCATTAC	58.986	50.000	4.18	0.00	0.00	1.89
2611	5772	1.013596	CATCGTGCGCCCTTTCATTA	58.986	50.000	4.18	0.00	0.00	1.90
2612	5773	0.676466	TCATCGTGCGCCCTTTCATT	60.676	50.000	4.18	0.00	0.00	2.57
2646	5990	6.971726	ATCGGACATATACTCTGTTTGGTA	57.028	37.500	0.00	0.00	0.00	3.25
2826	6186	2.031157	CGTTTGATTTTCGAGCAACCCT	60.031	45.455	0.00	0.00	32.49	4.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.