Multiple sequence alignment - TraesCS1A01G320100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G320100 chr1A 100.000 4169 0 0 1 4169 510801831 510805999 0.000000e+00 7699.0
1 TraesCS1A01G320100 chr1A 87.793 811 61 16 1679 2479 510672748 510673530 0.000000e+00 915.0
2 TraesCS1A01G320100 chr1A 87.411 421 50 3 2657 3075 510673528 510673947 8.110000e-132 481.0
3 TraesCS1A01G320100 chr1A 90.079 252 24 1 1348 1598 510672491 510672742 4.020000e-85 326.0
4 TraesCS1A01G320100 chr1D 91.574 1163 78 15 2505 3655 413779247 413780401 0.000000e+00 1587.0
5 TraesCS1A01G320100 chr1D 94.178 584 32 1 1920 2503 413778604 413779185 0.000000e+00 889.0
6 TraesCS1A01G320100 chr1D 94.061 522 19 2 348 867 413770877 413771388 0.000000e+00 782.0
7 TraesCS1A01G320100 chr1D 95.385 390 15 2 1208 1597 413772068 413772454 5.920000e-173 617.0
8 TraesCS1A01G320100 chr1D 91.500 400 32 2 2073 2471 413731042 413731440 2.190000e-152 549.0
9 TraesCS1A01G320100 chr1D 95.882 340 13 1 867 1205 413771697 413772036 2.190000e-152 549.0
10 TraesCS1A01G320100 chr1D 84.646 495 65 4 2660 3145 413731450 413731942 2.250000e-132 483.0
11 TraesCS1A01G320100 chr1D 93.571 280 18 0 1654 1933 413772456 413772735 6.450000e-113 418.0
12 TraesCS1A01G320100 chr1D 89.939 328 22 7 1679 2005 413730686 413731003 3.000000e-111 412.0
13 TraesCS1A01G320100 chr1D 85.888 411 31 8 3635 4032 413780419 413780815 3.000000e-111 412.0
14 TraesCS1A01G320100 chr1D 91.880 234 18 1 1348 1580 413729431 413729664 4.020000e-85 326.0
15 TraesCS1A01G320100 chr1D 83.333 120 6 3 4064 4169 413780816 413780935 9.540000e-17 99.0
16 TraesCS1A01G320100 chr1B 94.220 865 32 5 348 1205 558494596 558495449 0.000000e+00 1304.0
17 TraesCS1A01G320100 chr1B 90.748 962 69 15 2548 3499 558496813 558497764 0.000000e+00 1266.0
18 TraesCS1A01G320100 chr1B 92.000 850 64 3 1657 2503 558495881 558496729 0.000000e+00 1190.0
19 TraesCS1A01G320100 chr1B 88.717 842 67 13 1654 2479 558284682 558285511 0.000000e+00 1003.0
20 TraesCS1A01G320100 chr1B 96.675 391 11 2 1208 1597 558495481 558495870 0.000000e+00 649.0
21 TraesCS1A01G320100 chr1B 84.740 557 47 13 3635 4169 558499581 558500121 1.330000e-144 523.0
22 TraesCS1A01G320100 chr1B 92.593 351 24 2 1 349 107869359 107869709 1.730000e-138 503.0
23 TraesCS1A01G320100 chr1B 87.857 420 49 2 2657 3075 558285509 558285927 3.740000e-135 492.0
24 TraesCS1A01G320100 chr1B 90.361 249 24 0 1349 1597 558284432 558284680 1.120000e-85 327.0
25 TraesCS1A01G320100 chr1B 97.368 38 1 0 3378 3415 558497854 558497891 9.670000e-07 65.8
26 TraesCS1A01G320100 chr7D 81.265 854 119 26 1677 2500 26003365 26002523 0.000000e+00 652.0
27 TraesCS1A01G320100 chr7D 93.410 349 21 2 1 347 56909426 56909774 2.220000e-142 516.0
28 TraesCS1A01G320100 chr7D 79.325 711 127 13 1723 2428 23510073 23510768 8.110000e-132 481.0
29 TraesCS1A01G320100 chr7D 75.799 657 133 24 2517 3158 26002286 26001641 4.050000e-80 309.0
30 TraesCS1A01G320100 chr7D 91.379 58 5 0 1598 1655 119582884 119582941 3.450000e-11 80.5
31 TraesCS1A01G320100 chr7A 81.852 799 112 21 1682 2456 26839709 26838920 3.510000e-180 641.0
32 TraesCS1A01G320100 chr7A 80.907 838 133 20 1677 2500 25006683 25007507 1.630000e-178 636.0
33 TraesCS1A01G320100 chr7A 79.007 705 114 20 1735 2429 91910618 91911298 6.360000e-123 451.0
34 TraesCS1A01G320100 chr7A 81.527 406 66 4 2751 3153 25007761 25008160 4.020000e-85 326.0
35 TraesCS1A01G320100 chr4A 81.562 781 116 21 1677 2441 708916517 708915749 1.650000e-173 619.0
36 TraesCS1A01G320100 chr4A 79.529 425 76 8 2732 3153 708914032 708913616 4.080000e-75 292.0
37 TraesCS1A01G320100 chr4A 79.529 425 76 8 2732 3153 708915455 708915039 4.080000e-75 292.0
38 TraesCS1A01G320100 chr4A 87.931 58 7 0 1598 1655 669793066 669793123 7.480000e-08 69.4
39 TraesCS1A01G320100 chrUn 80.119 840 144 17 1677 2500 90118476 90117644 4.610000e-169 604.0
40 TraesCS1A01G320100 chr3D 93.696 349 20 2 1 347 37361212 37361560 4.780000e-144 521.0
41 TraesCS1A01G320100 chr3D 93.123 349 22 2 1 347 568891152 568890804 1.030000e-140 510.0
42 TraesCS1A01G320100 chr4D 92.898 352 23 2 1 350 221427629 221427980 1.030000e-140 510.0
43 TraesCS1A01G320100 chr4D 92.857 350 23 2 1 348 496608234 496608583 1.340000e-139 507.0
44 TraesCS1A01G320100 chr4D 92.837 349 23 2 1 347 1731717 1732065 4.810000e-139 505.0
45 TraesCS1A01G320100 chr2D 92.635 353 24 2 1 351 9179001 9178649 1.340000e-139 507.0
46 TraesCS1A01G320100 chr6D 92.837 349 23 2 1 347 436938850 436939198 4.810000e-139 505.0
47 TraesCS1A01G320100 chr6D 88.462 52 6 0 1603 1654 73783791 73783740 3.480000e-06 63.9
48 TraesCS1A01G320100 chr7B 81.065 338 59 3 2093 2429 41324809 41325142 8.890000e-67 265.0
49 TraesCS1A01G320100 chr7B 78.082 146 26 5 1376 1515 41333319 41333464 2.060000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G320100 chr1A 510801831 510805999 4168 False 7699.000000 7699 100.000000 1 4169 1 chr1A.!!$F1 4168
1 TraesCS1A01G320100 chr1A 510672491 510673947 1456 False 574.000000 915 88.427667 1348 3075 3 chr1A.!!$F2 1727
2 TraesCS1A01G320100 chr1D 413778604 413780935 2331 False 746.750000 1587 88.743250 1920 4169 4 chr1D.!!$F3 2249
3 TraesCS1A01G320100 chr1D 413770877 413772735 1858 False 591.500000 782 94.724750 348 1933 4 chr1D.!!$F2 1585
4 TraesCS1A01G320100 chr1D 413729431 413731942 2511 False 442.500000 549 89.491250 1348 3145 4 chr1D.!!$F1 1797
5 TraesCS1A01G320100 chr1B 558494596 558500121 5525 False 832.966667 1304 92.625167 348 4169 6 chr1B.!!$F3 3821
6 TraesCS1A01G320100 chr1B 558284432 558285927 1495 False 607.333333 1003 88.978333 1349 3075 3 chr1B.!!$F2 1726
7 TraesCS1A01G320100 chr7D 23510073 23510768 695 False 481.000000 481 79.325000 1723 2428 1 chr7D.!!$F1 705
8 TraesCS1A01G320100 chr7D 26001641 26003365 1724 True 480.500000 652 78.532000 1677 3158 2 chr7D.!!$R1 1481
9 TraesCS1A01G320100 chr7A 26838920 26839709 789 True 641.000000 641 81.852000 1682 2456 1 chr7A.!!$R1 774
10 TraesCS1A01G320100 chr7A 25006683 25008160 1477 False 481.000000 636 81.217000 1677 3153 2 chr7A.!!$F2 1476
11 TraesCS1A01G320100 chr7A 91910618 91911298 680 False 451.000000 451 79.007000 1735 2429 1 chr7A.!!$F1 694
12 TraesCS1A01G320100 chr4A 708913616 708916517 2901 True 401.000000 619 80.206667 1677 3153 3 chr4A.!!$R1 1476
13 TraesCS1A01G320100 chrUn 90117644 90118476 832 True 604.000000 604 80.119000 1677 2500 1 chrUn.!!$R1 823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.039618 AAGGTACACATGGCCCCTTG 59.960 55.0 0.00 0.0 34.32 3.61 F
332 333 0.179084 TAGATGCGCCACTAACAGCC 60.179 55.0 4.18 0.0 0.00 4.85 F
1603 2948 0.250553 TAAGTGACAACCCAAGCCGG 60.251 55.0 0.00 0.0 0.00 6.13 F
1628 2973 0.037790 GTTCAAGCTCTGCTCGGACT 60.038 55.0 0.00 0.0 38.25 3.85 F
1629 2974 0.244994 TTCAAGCTCTGCTCGGACTC 59.755 55.0 0.00 0.0 38.25 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1609 2954 0.037790 AGTCCGAGCAGAGCTTGAAC 60.038 55.0 7.80 0.0 42.27 3.18 R
1610 2955 0.244994 GAGTCCGAGCAGAGCTTGAA 59.755 55.0 7.80 0.0 42.27 2.69 R
2722 4436 0.179936 CTTCATCAGCCTGGGAGGTC 59.820 60.0 0.00 0.0 37.80 3.85 R
3036 6175 0.878416 GTCGCAAACTGGCCACATTA 59.122 50.0 0.00 0.0 0.00 1.90 R
3438 6593 0.882927 TGCGCAACGTTTAGCCTTCT 60.883 50.0 8.16 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.195683 TGGCGCACCATATTGCAC 58.804 55.556 10.83 0.00 42.67 4.57
20 21 1.378382 TGGCGCACCATATTGCACT 60.378 52.632 10.83 0.00 42.67 4.40
21 22 0.964860 TGGCGCACCATATTGCACTT 60.965 50.000 10.83 0.00 42.67 3.16
22 23 0.173255 GGCGCACCATATTGCACTTT 59.827 50.000 10.83 0.00 43.15 2.66
23 24 1.403679 GGCGCACCATATTGCACTTTA 59.596 47.619 10.83 0.00 43.15 1.85
24 25 2.541588 GGCGCACCATATTGCACTTTAG 60.542 50.000 10.83 0.00 43.15 1.85
25 26 2.097466 GCGCACCATATTGCACTTTAGT 59.903 45.455 0.30 0.00 43.15 2.24
27 28 3.487376 CGCACCATATTGCACTTTAGTGG 60.487 47.826 11.55 3.65 45.72 4.00
28 29 3.443681 GCACCATATTGCACTTTAGTGGT 59.556 43.478 11.55 4.18 45.72 4.16
29 30 4.985413 CACCATATTGCACTTTAGTGGTG 58.015 43.478 11.55 14.49 46.06 4.17
38 39 4.836125 CACTTTAGTGGTGCACAGAAAT 57.164 40.909 20.43 5.39 42.10 2.17
39 40 5.940192 CACTTTAGTGGTGCACAGAAATA 57.060 39.130 20.43 4.34 42.10 1.40
40 41 6.312399 CACTTTAGTGGTGCACAGAAATAA 57.688 37.500 20.43 10.33 42.10 1.40
41 42 6.734137 CACTTTAGTGGTGCACAGAAATAAA 58.266 36.000 20.43 16.52 42.10 1.40
42 43 7.199766 CACTTTAGTGGTGCACAGAAATAAAA 58.800 34.615 20.43 8.20 42.10 1.52
43 44 7.704472 CACTTTAGTGGTGCACAGAAATAAAAA 59.296 33.333 20.43 6.70 42.10 1.94
44 45 7.704899 ACTTTAGTGGTGCACAGAAATAAAAAC 59.295 33.333 20.43 0.00 36.74 2.43
45 46 5.590530 AGTGGTGCACAGAAATAAAAACA 57.409 34.783 20.43 0.00 36.74 2.83
46 47 5.348164 AGTGGTGCACAGAAATAAAAACAC 58.652 37.500 20.43 12.22 36.74 3.32
47 48 4.506288 GTGGTGCACAGAAATAAAAACACC 59.494 41.667 20.43 0.00 45.16 4.16
48 49 4.688021 GGTGCACAGAAATAAAAACACCA 58.312 39.130 20.43 0.00 44.50 4.17
49 50 4.744631 GGTGCACAGAAATAAAAACACCAG 59.255 41.667 20.43 0.00 44.50 4.00
50 51 5.348164 GTGCACAGAAATAAAAACACCAGT 58.652 37.500 13.17 0.00 0.00 4.00
51 52 5.231991 GTGCACAGAAATAAAAACACCAGTG 59.768 40.000 13.17 0.00 0.00 3.66
52 53 4.744631 GCACAGAAATAAAAACACCAGTGG 59.255 41.667 7.91 7.91 34.19 4.00
53 54 4.744631 CACAGAAATAAAAACACCAGTGGC 59.255 41.667 9.78 0.00 34.19 5.01
54 55 3.980775 CAGAAATAAAAACACCAGTGGCG 59.019 43.478 9.78 1.17 34.19 5.69
55 56 3.634910 AGAAATAAAAACACCAGTGGCGT 59.365 39.130 9.78 2.02 34.19 5.68
56 57 4.822896 AGAAATAAAAACACCAGTGGCGTA 59.177 37.500 9.78 0.00 34.19 4.42
57 58 5.475564 AGAAATAAAAACACCAGTGGCGTAT 59.524 36.000 9.78 0.00 34.19 3.06
58 59 5.715434 AATAAAAACACCAGTGGCGTATT 57.285 34.783 9.78 7.72 34.19 1.89
59 60 6.821031 AATAAAAACACCAGTGGCGTATTA 57.179 33.333 9.78 9.68 34.19 0.98
60 61 7.399245 AATAAAAACACCAGTGGCGTATTAT 57.601 32.000 9.78 11.46 34.19 1.28
61 62 4.957759 AAAACACCAGTGGCGTATTATC 57.042 40.909 9.78 0.00 34.19 1.75
62 63 3.906720 AACACCAGTGGCGTATTATCT 57.093 42.857 9.78 0.00 34.19 1.98
63 64 5.347620 AAACACCAGTGGCGTATTATCTA 57.652 39.130 9.78 0.00 34.19 1.98
64 65 5.347620 AACACCAGTGGCGTATTATCTAA 57.652 39.130 9.78 0.00 34.19 2.10
65 66 5.347620 ACACCAGTGGCGTATTATCTAAA 57.652 39.130 9.78 0.00 34.19 1.85
66 67 5.736813 ACACCAGTGGCGTATTATCTAAAA 58.263 37.500 9.78 0.00 34.19 1.52
67 68 5.815740 ACACCAGTGGCGTATTATCTAAAAG 59.184 40.000 9.78 0.00 34.19 2.27
68 69 5.815740 CACCAGTGGCGTATTATCTAAAAGT 59.184 40.000 9.78 0.00 0.00 2.66
69 70 5.815740 ACCAGTGGCGTATTATCTAAAAGTG 59.184 40.000 9.78 0.00 0.00 3.16
70 71 5.277345 CCAGTGGCGTATTATCTAAAAGTGC 60.277 44.000 0.00 0.00 0.00 4.40
71 72 4.506654 AGTGGCGTATTATCTAAAAGTGCG 59.493 41.667 0.00 0.00 0.00 5.34
72 73 4.269363 GTGGCGTATTATCTAAAAGTGCGT 59.731 41.667 0.00 0.00 0.00 5.24
73 74 4.505191 TGGCGTATTATCTAAAAGTGCGTC 59.495 41.667 0.00 0.00 0.00 5.19
74 75 4.505191 GGCGTATTATCTAAAAGTGCGTCA 59.495 41.667 0.00 0.00 0.00 4.35
75 76 5.176958 GGCGTATTATCTAAAAGTGCGTCAT 59.823 40.000 0.00 0.00 0.00 3.06
76 77 6.292703 GGCGTATTATCTAAAAGTGCGTCATT 60.293 38.462 0.00 0.00 0.00 2.57
77 78 7.095940 GGCGTATTATCTAAAAGTGCGTCATTA 60.096 37.037 0.00 0.00 0.00 1.90
78 79 7.945178 GCGTATTATCTAAAAGTGCGTCATTAG 59.055 37.037 0.00 0.00 0.00 1.73
79 80 8.965172 CGTATTATCTAAAAGTGCGTCATTAGT 58.035 33.333 0.00 0.00 0.00 2.24
83 84 6.956299 TCTAAAAGTGCGTCATTAGTAACC 57.044 37.500 0.00 0.00 0.00 2.85
84 85 5.870978 TCTAAAAGTGCGTCATTAGTAACCC 59.129 40.000 0.00 0.00 0.00 4.11
85 86 2.288961 AGTGCGTCATTAGTAACCCG 57.711 50.000 0.00 0.00 0.00 5.28
86 87 1.134907 AGTGCGTCATTAGTAACCCGG 60.135 52.381 0.00 0.00 0.00 5.73
87 88 1.135024 GTGCGTCATTAGTAACCCGGA 60.135 52.381 0.73 0.00 0.00 5.14
88 89 1.135527 TGCGTCATTAGTAACCCGGAG 59.864 52.381 0.73 0.00 0.00 4.63
89 90 1.849097 CGTCATTAGTAACCCGGAGC 58.151 55.000 0.73 0.00 0.00 4.70
90 91 1.135527 CGTCATTAGTAACCCGGAGCA 59.864 52.381 0.73 0.00 0.00 4.26
91 92 2.223971 CGTCATTAGTAACCCGGAGCAT 60.224 50.000 0.73 0.00 0.00 3.79
92 93 3.005050 CGTCATTAGTAACCCGGAGCATA 59.995 47.826 0.73 0.00 0.00 3.14
93 94 4.500205 CGTCATTAGTAACCCGGAGCATAA 60.500 45.833 0.73 0.00 0.00 1.90
94 95 4.989168 GTCATTAGTAACCCGGAGCATAAG 59.011 45.833 0.73 0.00 0.00 1.73
95 96 4.039973 TCATTAGTAACCCGGAGCATAAGG 59.960 45.833 0.73 0.00 0.00 2.69
96 97 1.875488 AGTAACCCGGAGCATAAGGT 58.125 50.000 0.73 0.00 0.00 3.50
97 98 3.036452 AGTAACCCGGAGCATAAGGTA 57.964 47.619 0.73 0.00 30.63 3.08
98 99 2.697229 AGTAACCCGGAGCATAAGGTAC 59.303 50.000 0.73 0.00 30.63 3.34
99 100 1.575419 AACCCGGAGCATAAGGTACA 58.425 50.000 0.73 0.00 30.63 2.90
100 101 0.828677 ACCCGGAGCATAAGGTACAC 59.171 55.000 0.73 0.00 0.00 2.90
101 102 0.828022 CCCGGAGCATAAGGTACACA 59.172 55.000 0.73 0.00 0.00 3.72
102 103 1.416401 CCCGGAGCATAAGGTACACAT 59.584 52.381 0.73 0.00 0.00 3.21
103 104 2.483876 CCGGAGCATAAGGTACACATG 58.516 52.381 0.00 0.00 0.00 3.21
104 105 2.483876 CGGAGCATAAGGTACACATGG 58.516 52.381 0.00 0.00 0.00 3.66
105 106 2.222027 GGAGCATAAGGTACACATGGC 58.778 52.381 0.00 0.00 0.00 4.40
106 107 2.222027 GAGCATAAGGTACACATGGCC 58.778 52.381 0.00 0.00 0.00 5.36
107 108 1.133792 AGCATAAGGTACACATGGCCC 60.134 52.381 0.00 0.00 0.00 5.80
108 109 1.981256 CATAAGGTACACATGGCCCC 58.019 55.000 0.00 0.00 0.00 5.80
109 110 1.494721 CATAAGGTACACATGGCCCCT 59.505 52.381 0.00 0.00 0.00 4.79
110 111 1.676248 TAAGGTACACATGGCCCCTT 58.324 50.000 11.36 11.36 38.91 3.95
111 112 0.039618 AAGGTACACATGGCCCCTTG 59.960 55.000 0.00 0.00 34.32 3.61
112 113 1.379843 GGTACACATGGCCCCTTGG 60.380 63.158 0.00 0.00 0.00 3.61
113 114 1.688811 GTACACATGGCCCCTTGGA 59.311 57.895 0.00 0.00 0.00 3.53
114 115 0.394352 GTACACATGGCCCCTTGGAG 60.394 60.000 0.00 0.00 0.00 3.86
115 116 0.844661 TACACATGGCCCCTTGGAGT 60.845 55.000 0.00 1.96 0.00 3.85
116 117 0.844661 ACACATGGCCCCTTGGAGTA 60.845 55.000 0.00 0.00 0.00 2.59
117 118 0.331278 CACATGGCCCCTTGGAGTAA 59.669 55.000 0.00 0.00 0.00 2.24
118 119 0.331616 ACATGGCCCCTTGGAGTAAC 59.668 55.000 0.00 0.00 0.00 2.50
119 120 0.331278 CATGGCCCCTTGGAGTAACA 59.669 55.000 0.00 0.00 0.00 2.41
120 121 0.625849 ATGGCCCCTTGGAGTAACAG 59.374 55.000 0.00 0.00 0.00 3.16
121 122 1.378646 GGCCCCTTGGAGTAACAGC 60.379 63.158 0.00 0.00 0.00 4.40
122 123 1.378762 GCCCCTTGGAGTAACAGCA 59.621 57.895 0.00 0.00 0.00 4.41
123 124 0.251165 GCCCCTTGGAGTAACAGCAA 60.251 55.000 0.00 0.00 0.00 3.91
124 125 1.616994 GCCCCTTGGAGTAACAGCAAT 60.617 52.381 0.00 0.00 0.00 3.56
125 126 2.094675 CCCCTTGGAGTAACAGCAATG 58.905 52.381 0.00 0.00 0.00 2.82
126 127 2.094675 CCCTTGGAGTAACAGCAATGG 58.905 52.381 0.00 0.00 0.00 3.16
127 128 1.474077 CCTTGGAGTAACAGCAATGGC 59.526 52.381 0.00 0.00 41.61 4.40
137 138 2.180017 GCAATGGCGCACTTCTGG 59.820 61.111 10.83 0.00 0.00 3.86
138 139 2.879907 CAATGGCGCACTTCTGGG 59.120 61.111 10.83 0.00 0.00 4.45
144 145 2.982130 CGCACTTCTGGGCCTAGT 59.018 61.111 16.69 5.33 0.00 2.57
145 146 2.199117 CGCACTTCTGGGCCTAGTA 58.801 57.895 16.69 5.53 0.00 1.82
146 147 0.535335 CGCACTTCTGGGCCTAGTAA 59.465 55.000 16.69 8.25 0.00 2.24
147 148 1.139058 CGCACTTCTGGGCCTAGTAAT 59.861 52.381 16.69 0.00 0.00 1.89
148 149 2.565841 GCACTTCTGGGCCTAGTAATG 58.434 52.381 16.69 7.98 0.00 1.90
149 150 2.746472 GCACTTCTGGGCCTAGTAATGG 60.746 54.545 16.69 4.77 0.00 3.16
155 156 4.857251 GCCTAGTAATGGCGCACT 57.143 55.556 10.83 6.53 41.03 4.40
156 157 3.080647 GCCTAGTAATGGCGCACTT 57.919 52.632 10.83 4.06 41.03 3.16
157 158 1.379527 GCCTAGTAATGGCGCACTTT 58.620 50.000 10.83 6.01 41.03 2.66
158 159 2.557317 GCCTAGTAATGGCGCACTTTA 58.443 47.619 10.83 5.00 41.03 1.85
159 160 2.544267 GCCTAGTAATGGCGCACTTTAG 59.456 50.000 10.83 2.89 41.03 1.85
160 161 2.544267 CCTAGTAATGGCGCACTTTAGC 59.456 50.000 10.83 3.65 0.00 3.09
161 162 2.403252 AGTAATGGCGCACTTTAGCT 57.597 45.000 10.83 0.00 0.00 3.32
162 163 2.009774 AGTAATGGCGCACTTTAGCTG 58.990 47.619 10.83 0.00 0.00 4.24
163 164 0.732571 TAATGGCGCACTTTAGCTGC 59.267 50.000 10.83 0.00 34.76 5.25
164 165 1.937546 AATGGCGCACTTTAGCTGCC 61.938 55.000 10.83 12.48 46.74 4.85
165 166 3.815396 GGCGCACTTTAGCTGCCC 61.815 66.667 10.83 0.00 43.47 5.36
166 167 3.055719 GCGCACTTTAGCTGCCCA 61.056 61.111 0.30 0.00 0.00 5.36
167 168 2.409870 GCGCACTTTAGCTGCCCAT 61.410 57.895 0.30 0.00 0.00 4.00
168 169 1.937546 GCGCACTTTAGCTGCCCATT 61.938 55.000 0.30 0.00 0.00 3.16
169 170 1.378531 CGCACTTTAGCTGCCCATTA 58.621 50.000 0.00 0.00 0.00 1.90
170 171 1.331756 CGCACTTTAGCTGCCCATTAG 59.668 52.381 0.00 0.00 0.00 1.73
171 172 2.369394 GCACTTTAGCTGCCCATTAGT 58.631 47.619 0.00 0.00 0.00 2.24
172 173 2.098117 GCACTTTAGCTGCCCATTAGTG 59.902 50.000 0.00 4.97 35.75 2.74
173 174 3.347216 CACTTTAGCTGCCCATTAGTGT 58.653 45.455 0.00 0.00 0.00 3.55
174 175 3.375299 CACTTTAGCTGCCCATTAGTGTC 59.625 47.826 0.00 0.00 0.00 3.67
175 176 3.264450 ACTTTAGCTGCCCATTAGTGTCT 59.736 43.478 0.00 0.00 0.00 3.41
176 177 2.988010 TAGCTGCCCATTAGTGTCTG 57.012 50.000 0.00 0.00 0.00 3.51
177 178 0.254178 AGCTGCCCATTAGTGTCTGG 59.746 55.000 0.00 0.00 0.00 3.86
189 190 7.324178 CCATTAGTGTCTGGGATAGTAATAGC 58.676 42.308 4.78 0.00 31.02 2.97
190 191 6.570672 TTAGTGTCTGGGATAGTAATAGCG 57.429 41.667 0.00 0.00 0.00 4.26
191 192 3.256136 AGTGTCTGGGATAGTAATAGCGC 59.744 47.826 0.00 0.00 0.00 5.92
192 193 3.005472 GTGTCTGGGATAGTAATAGCGCA 59.995 47.826 11.47 5.11 0.00 6.09
193 194 3.639561 TGTCTGGGATAGTAATAGCGCAA 59.360 43.478 11.47 0.00 0.00 4.85
194 195 3.988517 GTCTGGGATAGTAATAGCGCAAC 59.011 47.826 11.47 1.65 0.00 4.17
195 196 3.639561 TCTGGGATAGTAATAGCGCAACA 59.360 43.478 11.47 0.00 0.00 3.33
196 197 3.990092 TGGGATAGTAATAGCGCAACAG 58.010 45.455 11.47 0.00 0.00 3.16
197 198 3.244078 TGGGATAGTAATAGCGCAACAGG 60.244 47.826 11.47 0.00 0.00 4.00
198 199 3.244112 GGGATAGTAATAGCGCAACAGGT 60.244 47.826 11.47 0.00 0.00 4.00
199 200 3.741344 GGATAGTAATAGCGCAACAGGTG 59.259 47.826 11.47 0.00 0.00 4.00
200 201 2.024176 AGTAATAGCGCAACAGGTGG 57.976 50.000 11.47 0.00 0.00 4.61
201 202 1.278127 AGTAATAGCGCAACAGGTGGT 59.722 47.619 11.47 0.00 41.35 4.16
202 203 1.396996 GTAATAGCGCAACAGGTGGTG 59.603 52.381 11.47 0.00 38.38 4.17
215 216 3.979789 TGGTGCGCCACTGTTATG 58.020 55.556 16.89 0.00 40.46 1.90
216 217 1.072332 TGGTGCGCCACTGTTATGT 59.928 52.632 16.89 0.00 40.46 2.29
217 218 0.321996 TGGTGCGCCACTGTTATGTA 59.678 50.000 16.89 0.00 40.46 2.29
218 219 1.006832 GGTGCGCCACTGTTATGTAG 58.993 55.000 12.58 0.00 34.40 2.74
219 220 1.404986 GGTGCGCCACTGTTATGTAGA 60.405 52.381 12.58 0.00 34.40 2.59
220 221 2.550978 GTGCGCCACTGTTATGTAGAT 58.449 47.619 4.18 0.00 0.00 1.98
221 222 2.936498 GTGCGCCACTGTTATGTAGATT 59.064 45.455 4.18 0.00 0.00 2.40
222 223 4.116961 GTGCGCCACTGTTATGTAGATTA 58.883 43.478 4.18 0.00 0.00 1.75
223 224 4.569162 GTGCGCCACTGTTATGTAGATTAA 59.431 41.667 4.18 0.00 0.00 1.40
224 225 4.569162 TGCGCCACTGTTATGTAGATTAAC 59.431 41.667 4.18 0.00 0.00 2.01
225 226 4.569162 GCGCCACTGTTATGTAGATTAACA 59.431 41.667 0.00 0.00 37.25 2.41
226 227 5.064198 GCGCCACTGTTATGTAGATTAACAA 59.936 40.000 0.00 0.00 38.65 2.83
227 228 6.238374 GCGCCACTGTTATGTAGATTAACAAT 60.238 38.462 0.00 0.00 38.65 2.71
228 229 7.125755 CGCCACTGTTATGTAGATTAACAATG 58.874 38.462 0.00 0.00 38.65 2.82
230 231 7.417612 CCACTGTTATGTAGATTAACAATGGC 58.582 38.462 10.09 0.00 44.83 4.40
231 232 7.125755 CACTGTTATGTAGATTAACAATGGCG 58.874 38.462 0.00 0.00 38.65 5.69
232 233 6.055231 TGTTATGTAGATTAACAATGGCGC 57.945 37.500 0.00 0.00 36.79 6.53
233 234 5.586643 TGTTATGTAGATTAACAATGGCGCA 59.413 36.000 10.83 0.00 36.79 6.09
234 235 4.552166 ATGTAGATTAACAATGGCGCAC 57.448 40.909 10.83 0.00 32.02 5.34
235 236 2.680841 TGTAGATTAACAATGGCGCACC 59.319 45.455 10.83 0.00 0.00 5.01
236 237 9.271100 GTTATGTAGATTAACAATGGCGCACCA 62.271 40.741 10.83 0.00 38.59 4.17
249 250 3.049674 CACCAGTCGTGCGCCATT 61.050 61.111 4.18 0.00 35.18 3.16
250 251 1.739929 CACCAGTCGTGCGCCATTA 60.740 57.895 4.18 0.00 35.18 1.90
251 252 1.740296 ACCAGTCGTGCGCCATTAC 60.740 57.895 4.18 0.00 0.00 1.89
252 253 1.447838 CCAGTCGTGCGCCATTACT 60.448 57.895 4.18 0.00 0.00 2.24
253 254 0.179121 CCAGTCGTGCGCCATTACTA 60.179 55.000 4.18 0.00 0.00 1.82
254 255 1.538204 CCAGTCGTGCGCCATTACTAT 60.538 52.381 4.18 0.00 0.00 2.12
255 256 2.201732 CAGTCGTGCGCCATTACTATT 58.798 47.619 4.18 0.00 0.00 1.73
256 257 2.607635 CAGTCGTGCGCCATTACTATTT 59.392 45.455 4.18 0.00 0.00 1.40
257 258 3.799963 CAGTCGTGCGCCATTACTATTTA 59.200 43.478 4.18 0.00 0.00 1.40
258 259 4.447724 CAGTCGTGCGCCATTACTATTTAT 59.552 41.667 4.18 0.00 0.00 1.40
259 260 5.050363 CAGTCGTGCGCCATTACTATTTATT 60.050 40.000 4.18 0.00 0.00 1.40
260 261 6.144886 CAGTCGTGCGCCATTACTATTTATTA 59.855 38.462 4.18 0.00 0.00 0.98
261 262 6.365247 AGTCGTGCGCCATTACTATTTATTAG 59.635 38.462 4.18 0.00 0.00 1.73
262 263 6.145048 GTCGTGCGCCATTACTATTTATTAGT 59.855 38.462 4.18 0.00 43.66 2.24
263 264 7.326789 GTCGTGCGCCATTACTATTTATTAGTA 59.673 37.037 4.18 0.00 41.49 1.82
264 265 7.539710 TCGTGCGCCATTACTATTTATTAGTAG 59.460 37.037 4.18 0.00 42.83 2.57
265 266 7.327761 CGTGCGCCATTACTATTTATTAGTAGT 59.672 37.037 4.18 0.00 42.83 2.73
266 267 8.433126 GTGCGCCATTACTATTTATTAGTAGTG 58.567 37.037 4.18 8.75 44.61 2.74
272 273 9.687210 CATTACTATTTATTAGTAGTGGCGTGA 57.313 33.333 8.15 0.00 42.82 4.35
280 281 9.687210 TTTATTAGTAGTGGCGTGATAATAGTG 57.313 33.333 0.00 0.00 0.00 2.74
281 282 4.585955 AGTAGTGGCGTGATAATAGTGG 57.414 45.455 0.00 0.00 0.00 4.00
282 283 2.240493 AGTGGCGTGATAATAGTGGC 57.760 50.000 0.00 0.00 0.00 5.01
283 284 0.859232 GTGGCGTGATAATAGTGGCG 59.141 55.000 0.00 0.00 0.00 5.69
284 285 0.878523 TGGCGTGATAATAGTGGCGC 60.879 55.000 0.00 0.00 43.46 6.53
285 286 0.878523 GGCGTGATAATAGTGGCGCA 60.879 55.000 10.83 0.00 45.58 6.09
286 287 1.148310 GCGTGATAATAGTGGCGCAT 58.852 50.000 10.83 0.00 43.62 4.73
287 288 1.126846 GCGTGATAATAGTGGCGCATC 59.873 52.381 10.83 1.68 43.62 3.91
288 289 2.677199 CGTGATAATAGTGGCGCATCT 58.323 47.619 10.83 9.40 0.00 2.90
289 290 3.833442 CGTGATAATAGTGGCGCATCTA 58.167 45.455 10.83 11.52 0.00 1.98
290 291 4.424626 CGTGATAATAGTGGCGCATCTAT 58.575 43.478 10.83 13.40 0.00 1.98
291 292 5.578776 CGTGATAATAGTGGCGCATCTATA 58.421 41.667 18.90 10.91 0.00 1.31
292 293 5.683302 CGTGATAATAGTGGCGCATCTATAG 59.317 44.000 18.90 0.00 0.00 1.31
293 294 6.565234 GTGATAATAGTGGCGCATCTATAGT 58.435 40.000 18.90 12.76 0.00 2.12
294 295 6.473778 GTGATAATAGTGGCGCATCTATAGTG 59.526 42.308 18.90 0.00 0.00 2.74
295 296 2.724977 TAGTGGCGCATCTATAGTGC 57.275 50.000 10.83 13.93 41.56 4.40
307 308 6.613233 GCATCTATAGTGCGTCATTAGTAGT 58.387 40.000 10.27 0.00 32.29 2.73
308 309 6.743627 GCATCTATAGTGCGTCATTAGTAGTC 59.256 42.308 10.27 0.00 32.29 2.59
309 310 7.573283 GCATCTATAGTGCGTCATTAGTAGTCA 60.573 40.741 10.27 0.00 32.29 3.41
310 311 7.797038 TCTATAGTGCGTCATTAGTAGTCAA 57.203 36.000 0.00 0.00 0.00 3.18
311 312 8.217131 TCTATAGTGCGTCATTAGTAGTCAAA 57.783 34.615 0.00 0.00 0.00 2.69
312 313 8.680001 TCTATAGTGCGTCATTAGTAGTCAAAA 58.320 33.333 0.00 0.00 0.00 2.44
313 314 9.464714 CTATAGTGCGTCATTAGTAGTCAAAAT 57.535 33.333 0.00 0.00 0.00 1.82
315 316 7.757097 AGTGCGTCATTAGTAGTCAAAATAG 57.243 36.000 0.00 0.00 0.00 1.73
316 317 7.544622 AGTGCGTCATTAGTAGTCAAAATAGA 58.455 34.615 0.00 0.00 0.00 1.98
317 318 8.198109 AGTGCGTCATTAGTAGTCAAAATAGAT 58.802 33.333 0.00 0.00 0.00 1.98
318 319 8.269424 GTGCGTCATTAGTAGTCAAAATAGATG 58.731 37.037 0.00 0.00 0.00 2.90
319 320 7.042725 TGCGTCATTAGTAGTCAAAATAGATGC 60.043 37.037 0.00 0.00 35.49 3.91
320 321 7.494130 CGTCATTAGTAGTCAAAATAGATGCG 58.506 38.462 0.00 0.00 0.00 4.73
321 322 7.284351 GTCATTAGTAGTCAAAATAGATGCGC 58.716 38.462 0.00 0.00 0.00 6.09
322 323 6.423905 TCATTAGTAGTCAAAATAGATGCGCC 59.576 38.462 4.18 0.00 0.00 6.53
323 324 4.137116 AGTAGTCAAAATAGATGCGCCA 57.863 40.909 4.18 0.00 0.00 5.69
324 325 3.871594 AGTAGTCAAAATAGATGCGCCAC 59.128 43.478 4.18 0.00 0.00 5.01
325 326 2.991250 AGTCAAAATAGATGCGCCACT 58.009 42.857 4.18 6.83 0.00 4.00
326 327 4.137116 AGTCAAAATAGATGCGCCACTA 57.863 40.909 4.18 9.11 0.00 2.74
327 328 4.513442 AGTCAAAATAGATGCGCCACTAA 58.487 39.130 4.18 0.00 0.00 2.24
328 329 4.332819 AGTCAAAATAGATGCGCCACTAAC 59.667 41.667 4.18 3.56 0.00 2.34
329 330 4.094294 GTCAAAATAGATGCGCCACTAACA 59.906 41.667 4.18 0.00 0.00 2.41
330 331 4.332543 TCAAAATAGATGCGCCACTAACAG 59.667 41.667 4.18 1.62 0.00 3.16
331 332 1.871080 ATAGATGCGCCACTAACAGC 58.129 50.000 4.18 0.00 0.00 4.40
332 333 0.179084 TAGATGCGCCACTAACAGCC 60.179 55.000 4.18 0.00 0.00 4.85
333 334 1.450312 GATGCGCCACTAACAGCCT 60.450 57.895 4.18 0.00 0.00 4.58
334 335 1.002134 ATGCGCCACTAACAGCCTT 60.002 52.632 4.18 0.00 0.00 4.35
335 336 0.609131 ATGCGCCACTAACAGCCTTT 60.609 50.000 4.18 0.00 0.00 3.11
336 337 0.821711 TGCGCCACTAACAGCCTTTT 60.822 50.000 4.18 0.00 0.00 2.27
337 338 0.313987 GCGCCACTAACAGCCTTTTT 59.686 50.000 0.00 0.00 0.00 1.94
338 339 1.666023 GCGCCACTAACAGCCTTTTTC 60.666 52.381 0.00 0.00 0.00 2.29
339 340 1.880027 CGCCACTAACAGCCTTTTTCT 59.120 47.619 0.00 0.00 0.00 2.52
340 341 3.071479 CGCCACTAACAGCCTTTTTCTA 58.929 45.455 0.00 0.00 0.00 2.10
341 342 3.500680 CGCCACTAACAGCCTTTTTCTAA 59.499 43.478 0.00 0.00 0.00 2.10
342 343 4.156008 CGCCACTAACAGCCTTTTTCTAAT 59.844 41.667 0.00 0.00 0.00 1.73
343 344 5.353123 CGCCACTAACAGCCTTTTTCTAATA 59.647 40.000 0.00 0.00 0.00 0.98
344 345 6.456988 CGCCACTAACAGCCTTTTTCTAATAG 60.457 42.308 0.00 0.00 0.00 1.73
345 346 6.374613 GCCACTAACAGCCTTTTTCTAATAGT 59.625 38.462 0.00 0.00 0.00 2.12
346 347 7.626452 GCCACTAACAGCCTTTTTCTAATAGTG 60.626 40.741 0.00 0.00 38.15 2.74
354 355 7.987458 CAGCCTTTTTCTAATAGTGACCATCTA 59.013 37.037 0.00 0.00 0.00 1.98
373 374 8.640651 ACCATCTAATTTGCATGCACATTAATA 58.359 29.630 29.48 23.05 31.03 0.98
387 388 6.878389 TGCACATTAATATCAGGCATATCGAA 59.122 34.615 0.00 0.00 0.00 3.71
388 389 7.553760 TGCACATTAATATCAGGCATATCGAAT 59.446 33.333 0.00 0.00 0.00 3.34
389 390 8.066595 GCACATTAATATCAGGCATATCGAATC 58.933 37.037 0.00 0.00 0.00 2.52
390 391 9.101655 CACATTAATATCAGGCATATCGAATCA 57.898 33.333 0.00 0.00 0.00 2.57
391 392 9.842775 ACATTAATATCAGGCATATCGAATCAT 57.157 29.630 0.00 0.00 0.00 2.45
417 418 5.847111 ATTAGTGATCAAACTGCATGCAT 57.153 34.783 22.97 4.56 0.00 3.96
453 454 5.667172 TCCCTTGGACTCATGATCTTATTCA 59.333 40.000 0.00 0.00 0.00 2.57
614 619 3.381590 GGAAGGAATCAATACCAGCCAAC 59.618 47.826 0.00 0.00 0.00 3.77
662 667 7.060518 TGTTGATTAGAAAATTCATTCAACGCG 59.939 33.333 3.53 3.53 38.09 6.01
753 760 6.507456 GCTCAAAGTTCGTACGTTGTATATGG 60.507 42.308 16.05 1.93 42.20 2.74
831 838 4.459330 TGCATCCATTGGTGAATATTCGA 58.541 39.130 10.80 0.73 0.00 3.71
849 856 4.604843 TCGATCGTACGTTGTACAGATT 57.395 40.909 15.94 0.00 34.70 2.40
917 1233 9.807386 CTTCTGTTTACCGAATAGTTAAAGTTG 57.193 33.333 0.00 0.00 0.00 3.16
1083 1400 1.153289 CCAAGATCCGGCTCTGGTG 60.153 63.158 8.93 4.28 0.00 4.17
1097 1414 3.594134 CTCTGGTGTCTCTCCAATTGAC 58.406 50.000 7.12 0.00 34.35 3.18
1152 1469 6.317140 TGCATGATCTTCGAGCTTTTAATTCT 59.683 34.615 0.00 0.00 0.00 2.40
1205 1522 7.599621 TGTGAAAATCCATGAGCTTTAATGTTG 59.400 33.333 0.00 0.00 0.00 3.33
1206 1523 7.599998 GTGAAAATCCATGAGCTTTAATGTTGT 59.400 33.333 0.00 0.00 0.00 3.32
1288 1634 7.595502 CGTGATTCTAGCCTTATTATTTCGTCT 59.404 37.037 0.00 0.00 0.00 4.18
1335 1682 3.764972 GGACCCATTTTTATTGAACCGGA 59.235 43.478 9.46 0.00 0.00 5.14
1381 1728 1.404315 GGGACAGTTCAGATGACGGTC 60.404 57.143 0.00 0.00 0.00 4.79
1390 1737 1.040339 AGATGACGGTCCAGGAGCTC 61.040 60.000 16.76 4.71 0.00 4.09
1597 2942 5.514136 CCTCTTTATGGTAAGTGACAACCCA 60.514 44.000 4.91 0.00 34.69 4.51
1599 2944 6.001460 TCTTTATGGTAAGTGACAACCCAAG 58.999 40.000 4.91 5.14 34.69 3.61
1601 2946 1.244816 GGTAAGTGACAACCCAAGCC 58.755 55.000 0.00 0.00 0.00 4.35
1603 2948 0.250553 TAAGTGACAACCCAAGCCGG 60.251 55.000 0.00 0.00 0.00 6.13
1612 2957 2.124695 CCAAGCCGGGCTAGGTTC 60.125 66.667 24.16 0.00 38.25 3.62
1613 2958 2.668632 CAAGCCGGGCTAGGTTCA 59.331 61.111 24.16 0.00 38.25 3.18
1614 2959 1.002624 CAAGCCGGGCTAGGTTCAA 60.003 57.895 24.16 0.00 38.25 2.69
1615 2960 1.026718 CAAGCCGGGCTAGGTTCAAG 61.027 60.000 24.16 1.36 38.25 3.02
1616 2961 2.821679 AAGCCGGGCTAGGTTCAAGC 62.822 60.000 24.16 0.00 38.25 4.01
1617 2962 2.990479 CCGGGCTAGGTTCAAGCT 59.010 61.111 0.00 0.00 39.97 3.74
1618 2963 1.153349 CCGGGCTAGGTTCAAGCTC 60.153 63.158 0.00 0.00 39.97 4.09
1619 2964 1.617947 CCGGGCTAGGTTCAAGCTCT 61.618 60.000 0.00 0.00 38.37 4.09
1620 2965 0.460987 CGGGCTAGGTTCAAGCTCTG 60.461 60.000 0.00 0.00 38.37 3.35
1621 2966 0.746204 GGGCTAGGTTCAAGCTCTGC 60.746 60.000 0.00 0.00 37.48 4.26
1622 2967 0.251634 GGCTAGGTTCAAGCTCTGCT 59.748 55.000 12.35 0.00 42.56 4.24
1623 2968 1.650825 GCTAGGTTCAAGCTCTGCTC 58.349 55.000 0.00 0.00 38.25 4.26
1624 2969 1.919918 CTAGGTTCAAGCTCTGCTCG 58.080 55.000 0.00 0.00 38.25 5.03
1625 2970 0.532573 TAGGTTCAAGCTCTGCTCGG 59.467 55.000 0.00 0.00 38.25 4.63
1626 2971 1.188219 AGGTTCAAGCTCTGCTCGGA 61.188 55.000 0.00 0.00 38.25 4.55
1627 2972 1.016653 GGTTCAAGCTCTGCTCGGAC 61.017 60.000 0.00 0.00 38.25 4.79
1628 2973 0.037790 GTTCAAGCTCTGCTCGGACT 60.038 55.000 0.00 0.00 38.25 3.85
1629 2974 0.244994 TTCAAGCTCTGCTCGGACTC 59.755 55.000 0.00 0.00 38.25 3.36
1630 2975 1.515952 CAAGCTCTGCTCGGACTCG 60.516 63.158 0.00 0.00 38.25 4.18
1631 2976 2.705821 AAGCTCTGCTCGGACTCGG 61.706 63.158 0.00 0.00 38.25 4.63
1632 2977 4.863925 GCTCTGCTCGGACTCGGC 62.864 72.222 0.00 0.00 36.95 5.54
1633 2978 4.200283 CTCTGCTCGGACTCGGCC 62.200 72.222 0.00 0.00 36.95 6.13
1648 2993 2.125269 GCCGGCGCCTTTTCTCTA 60.125 61.111 26.68 0.00 0.00 2.43
1649 2994 1.743995 GCCGGCGCCTTTTCTCTAA 60.744 57.895 26.68 0.00 0.00 2.10
1650 2995 1.303091 GCCGGCGCCTTTTCTCTAAA 61.303 55.000 26.68 0.00 0.00 1.85
1651 2996 1.161843 CCGGCGCCTTTTCTCTAAAA 58.838 50.000 26.68 0.00 33.58 1.52
1652 2997 1.538075 CCGGCGCCTTTTCTCTAAAAA 59.462 47.619 26.68 0.00 34.26 1.94
1674 3025 4.427394 GCTGCAGCTGCGTACTAT 57.573 55.556 32.11 0.00 45.83 2.12
1703 3056 1.174712 TTGGAGCAAGACCAAGCAGC 61.175 55.000 0.00 0.00 41.64 5.25
1715 3068 2.691526 ACCAAGCAGCAATATCCATGTG 59.308 45.455 0.00 0.00 0.00 3.21
1726 3093 5.451908 CAATATCCATGTGGTTTCGTATGC 58.548 41.667 0.00 0.00 36.34 3.14
1795 3165 3.385749 GATGGCCGCTTCGAGGGAA 62.386 63.158 0.00 0.00 0.00 3.97
2029 3448 3.548616 CGCAGAGCAATGTCTTCACAAAA 60.549 43.478 0.00 0.00 35.64 2.44
2143 3589 2.979649 GGGGGAGTGAAGGACGAC 59.020 66.667 0.00 0.00 0.00 4.34
2541 4251 7.176515 TGAACAGAGGTGGTACGTATAAACTAA 59.823 37.037 0.00 0.00 0.00 2.24
2553 4263 5.932303 ACGTATAAACTAATGCATAGGCTGG 59.068 40.000 0.00 0.00 41.91 4.85
2602 4312 7.495606 GCTTTTCCCCGAAAAATGATTTCATAT 59.504 33.333 0.00 0.00 40.34 1.78
2658 4368 9.070179 CATCCATATGAAACATGATAGTCCAAA 57.930 33.333 3.65 0.00 34.84 3.28
2697 4407 6.966021 TCCCGAAACTTTAAATCTTCAACAG 58.034 36.000 9.05 0.00 0.00 3.16
2698 4408 6.768861 TCCCGAAACTTTAAATCTTCAACAGA 59.231 34.615 9.05 0.00 35.33 3.41
2699 4409 6.856426 CCCGAAACTTTAAATCTTCAACAGAC 59.144 38.462 9.05 0.00 32.83 3.51
2700 4410 7.255139 CCCGAAACTTTAAATCTTCAACAGACT 60.255 37.037 9.05 0.00 32.83 3.24
2863 5999 6.375736 CACTAGACTACTCTGTTGATCCTGAA 59.624 42.308 0.00 0.00 0.00 3.02
2943 6079 6.099269 ACAAAAGTGAAGGTCAAGGACTACTA 59.901 38.462 0.00 0.00 32.47 1.82
3036 6175 9.074576 TCTGCTATCATTGCTTTCATTCAATAT 57.925 29.630 0.00 0.00 32.22 1.28
3047 6187 6.643770 GCTTTCATTCAATATAATGTGGCCAG 59.356 38.462 5.11 0.00 37.94 4.85
3097 6247 4.042398 CGTCACATCCCTAAGTGTATTCG 58.958 47.826 0.00 0.00 37.07 3.34
3268 6422 0.892755 ATGAACTTGCGTCCCGACTA 59.107 50.000 0.00 0.00 0.00 2.59
3281 6435 5.644644 CGTCCCGACTACTAAGTTACAATT 58.355 41.667 0.00 0.00 35.56 2.32
3284 6438 6.309737 GTCCCGACTACTAAGTTACAATTGTG 59.690 42.308 21.42 5.59 35.56 3.33
3295 6449 5.393124 AGTTACAATTGTGATCAATGCGTG 58.607 37.500 21.42 0.00 42.60 5.34
3309 6463 5.064558 TCAATGCGTGGAAGGTTTTACTAA 58.935 37.500 0.00 0.00 0.00 2.24
3338 6493 9.084533 ACTAAAGGATGTATTTTAAACTGGCAA 57.915 29.630 0.00 0.00 0.00 4.52
3384 6539 7.995488 GCCATAAGGGAGTCATGCTAATAATAT 59.005 37.037 0.00 0.00 40.01 1.28
3438 6593 3.812053 ACAAAGCTTTGCAAACAACAACA 59.188 34.783 33.72 0.00 41.79 3.33
3449 6604 4.267690 GCAAACAACAACAGAAGGCTAAAC 59.732 41.667 0.00 0.00 0.00 2.01
3474 6629 2.560504 CGCAAATGGGCATACTAGACA 58.439 47.619 0.00 0.00 0.00 3.41
3476 6631 3.565482 CGCAAATGGGCATACTAGACAAT 59.435 43.478 0.00 0.00 0.00 2.71
3518 8354 4.183101 ACACACCTCGTCGTTTAAGAAAA 58.817 39.130 0.00 0.00 0.00 2.29
3521 8357 6.183360 ACACACCTCGTCGTTTAAGAAAAATT 60.183 34.615 0.00 0.00 0.00 1.82
3524 8360 7.011295 ACACCTCGTCGTTTAAGAAAAATTGTA 59.989 33.333 0.00 0.00 0.00 2.41
3545 8381 8.864069 TTGTACATTTTTCAACAATTCGACAT 57.136 26.923 0.00 0.00 0.00 3.06
3611 8448 4.657969 TGGAGATGGTTTTGACCCAAAAAT 59.342 37.500 6.45 0.00 43.50 1.82
3618 8456 4.273235 GGTTTTGACCCAAAAATTCAGCTG 59.727 41.667 7.63 7.63 43.50 4.24
3724 8600 2.289819 GGTGGAGGTGGTTCGTTTGATA 60.290 50.000 0.00 0.00 0.00 2.15
3757 8633 0.783206 TTTCTGGGATCCTTGGGCAA 59.217 50.000 12.58 0.00 0.00 4.52
3761 8637 1.758862 CTGGGATCCTTGGGCAATTTC 59.241 52.381 12.58 0.00 0.00 2.17
3775 8651 5.163499 TGGGCAATTTCGTGTTCTAAACTTT 60.163 36.000 0.00 0.00 0.00 2.66
3781 8657 8.531530 CAATTTCGTGTTCTAAACTTTCTTTGG 58.468 33.333 0.00 0.00 0.00 3.28
3797 8673 9.856162 ACTTTCTTTGGTTATTTAGTACCTCAA 57.144 29.630 0.00 0.00 35.41 3.02
3828 8704 1.134521 GGTGTACCTGCCGATGATGAA 60.135 52.381 0.00 0.00 0.00 2.57
3829 8705 1.933853 GTGTACCTGCCGATGATGAAC 59.066 52.381 0.00 0.00 0.00 3.18
3830 8706 1.552792 TGTACCTGCCGATGATGAACA 59.447 47.619 0.00 0.00 0.00 3.18
3832 8708 1.671979 ACCTGCCGATGATGAACATG 58.328 50.000 0.00 0.00 39.56 3.21
3834 8710 2.019249 CCTGCCGATGATGAACATGTT 58.981 47.619 11.78 11.78 39.56 2.71
3835 8711 2.223409 CCTGCCGATGATGAACATGTTG 60.223 50.000 17.58 0.00 39.56 3.33
3836 8712 2.679336 CTGCCGATGATGAACATGTTGA 59.321 45.455 17.58 8.31 39.56 3.18
3837 8713 3.080319 TGCCGATGATGAACATGTTGAA 58.920 40.909 17.58 4.27 39.56 2.69
3838 8714 3.119884 TGCCGATGATGAACATGTTGAAC 60.120 43.478 17.58 7.13 39.56 3.18
3840 8716 4.439153 GCCGATGATGAACATGTTGAACAT 60.439 41.667 18.15 18.15 39.91 2.71
3872 8748 1.401761 AGCTTGGCACATGTTGAACA 58.598 45.000 0.00 0.00 39.30 3.18
3877 8753 3.646611 TGGCACATGTTGAACATTCAG 57.353 42.857 8.30 0.20 36.53 3.02
3885 8761 4.747540 TGTTGAACATTCAGGAACATCG 57.252 40.909 0.00 0.00 38.61 3.84
3950 8839 2.299582 CCCAATGACATGAGCCAAAACA 59.700 45.455 0.00 0.00 0.00 2.83
3973 8862 0.321671 CATGTGTCTCCAACCGGACT 59.678 55.000 9.46 0.00 35.91 3.85
3985 8874 2.342279 CGGACTTGGCTGACCGAA 59.658 61.111 13.84 0.00 45.25 4.30
3993 8882 2.434185 GCTGACCGAATGACCGCA 60.434 61.111 0.00 0.00 0.00 5.69
4058 8947 8.548721 TCTCAAGAACAAAGAACTATTTCGTTC 58.451 33.333 0.00 0.00 42.73 3.95
4092 8981 9.366216 AGTGTTTTCTTTTTAACCAAAGTCATC 57.634 29.630 0.74 0.00 35.56 2.92
4137 9040 3.554337 CGTTTGTAGAGGCCACACTACTT 60.554 47.826 24.42 0.00 40.22 2.24
4151 9054 2.269940 ACTACTTGAGTGGGCCTTGAT 58.730 47.619 4.53 0.00 36.87 2.57
4162 9065 1.379576 GCCTTGATGCTCAGCCCTT 60.380 57.895 0.00 0.00 0.00 3.95
4164 9067 0.323178 CCTTGATGCTCAGCCCTTGT 60.323 55.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.869747 CACCACTAAAGTGCAATATGGTGCG 62.870 48.000 19.96 10.94 46.45 5.34
6 7 3.443681 ACCACTAAAGTGCAATATGGTGC 59.556 43.478 10.41 0.00 44.34 5.01
7 8 4.985413 CACCACTAAAGTGCAATATGGTG 58.015 43.478 19.00 19.00 46.86 4.17
17 18 4.836125 ATTTCTGTGCACCACTAAAGTG 57.164 40.909 15.69 3.02 45.23 3.16
18 19 6.952773 TTTATTTCTGTGCACCACTAAAGT 57.047 33.333 15.69 1.21 35.11 2.66
19 20 7.704472 TGTTTTTATTTCTGTGCACCACTAAAG 59.296 33.333 15.69 3.61 35.11 1.85
20 21 7.489757 GTGTTTTTATTTCTGTGCACCACTAAA 59.510 33.333 15.69 9.63 35.11 1.85
21 22 6.975772 GTGTTTTTATTTCTGTGCACCACTAA 59.024 34.615 15.69 3.83 35.11 2.24
22 23 6.460399 GGTGTTTTTATTTCTGTGCACCACTA 60.460 38.462 15.69 0.00 43.13 2.74
23 24 5.348164 GTGTTTTTATTTCTGTGCACCACT 58.652 37.500 15.69 0.00 35.11 4.00
24 25 4.506288 GGTGTTTTTATTTCTGTGCACCAC 59.494 41.667 15.69 9.91 43.13 4.16
25 26 4.688021 GGTGTTTTTATTTCTGTGCACCA 58.312 39.130 15.69 1.31 43.13 4.17
26 27 4.688021 TGGTGTTTTTATTTCTGTGCACC 58.312 39.130 15.69 0.00 43.70 5.01
27 28 5.231991 CACTGGTGTTTTTATTTCTGTGCAC 59.768 40.000 10.75 10.75 0.00 4.57
28 29 5.347342 CACTGGTGTTTTTATTTCTGTGCA 58.653 37.500 0.00 0.00 0.00 4.57
29 30 4.744631 CCACTGGTGTTTTTATTTCTGTGC 59.255 41.667 0.00 0.00 0.00 4.57
30 31 4.744631 GCCACTGGTGTTTTTATTTCTGTG 59.255 41.667 0.00 0.00 0.00 3.66
31 32 4.499019 CGCCACTGGTGTTTTTATTTCTGT 60.499 41.667 0.00 0.00 0.00 3.41
32 33 3.980775 CGCCACTGGTGTTTTTATTTCTG 59.019 43.478 0.00 0.00 0.00 3.02
33 34 3.634910 ACGCCACTGGTGTTTTTATTTCT 59.365 39.130 8.58 0.00 44.78 2.52
34 35 3.972403 ACGCCACTGGTGTTTTTATTTC 58.028 40.909 8.58 0.00 44.78 2.17
35 36 5.715434 ATACGCCACTGGTGTTTTTATTT 57.285 34.783 19.37 0.00 44.78 1.40
36 37 5.715434 AATACGCCACTGGTGTTTTTATT 57.285 34.783 19.37 10.10 44.78 1.40
37 38 6.826741 AGATAATACGCCACTGGTGTTTTTAT 59.173 34.615 19.37 19.57 44.78 1.40
38 39 6.174760 AGATAATACGCCACTGGTGTTTTTA 58.825 36.000 19.37 16.38 44.78 1.52
39 40 5.007682 AGATAATACGCCACTGGTGTTTTT 58.992 37.500 19.37 14.95 44.78 1.94
40 41 4.585879 AGATAATACGCCACTGGTGTTTT 58.414 39.130 19.37 18.59 44.78 2.43
41 42 4.216411 AGATAATACGCCACTGGTGTTT 57.784 40.909 19.37 14.55 44.78 2.83
42 43 3.906720 AGATAATACGCCACTGGTGTT 57.093 42.857 19.37 5.44 44.78 3.32
44 45 5.815740 ACTTTTAGATAATACGCCACTGGTG 59.184 40.000 7.11 7.11 39.41 4.17
45 46 5.815740 CACTTTTAGATAATACGCCACTGGT 59.184 40.000 0.00 0.00 0.00 4.00
46 47 5.277345 GCACTTTTAGATAATACGCCACTGG 60.277 44.000 0.00 0.00 0.00 4.00
47 48 5.556382 CGCACTTTTAGATAATACGCCACTG 60.556 44.000 0.00 0.00 0.00 3.66
48 49 4.506654 CGCACTTTTAGATAATACGCCACT 59.493 41.667 0.00 0.00 0.00 4.00
49 50 4.269363 ACGCACTTTTAGATAATACGCCAC 59.731 41.667 0.00 0.00 0.00 5.01
50 51 4.435425 ACGCACTTTTAGATAATACGCCA 58.565 39.130 0.00 0.00 0.00 5.69
51 52 4.505191 TGACGCACTTTTAGATAATACGCC 59.495 41.667 0.00 0.00 0.00 5.68
52 53 5.630896 TGACGCACTTTTAGATAATACGC 57.369 39.130 0.00 0.00 0.00 4.42
53 54 8.965172 ACTAATGACGCACTTTTAGATAATACG 58.035 33.333 0.00 0.00 0.00 3.06
57 58 9.090692 GGTTACTAATGACGCACTTTTAGATAA 57.909 33.333 0.00 0.00 0.00 1.75
58 59 7.707893 GGGTTACTAATGACGCACTTTTAGATA 59.292 37.037 0.00 0.00 0.00 1.98
59 60 6.537660 GGGTTACTAATGACGCACTTTTAGAT 59.462 38.462 0.00 0.00 0.00 1.98
60 61 5.870978 GGGTTACTAATGACGCACTTTTAGA 59.129 40.000 0.00 0.00 0.00 2.10
61 62 5.220340 CGGGTTACTAATGACGCACTTTTAG 60.220 44.000 0.00 0.00 0.00 1.85
62 63 4.626604 CGGGTTACTAATGACGCACTTTTA 59.373 41.667 0.00 0.00 0.00 1.52
63 64 3.434299 CGGGTTACTAATGACGCACTTTT 59.566 43.478 0.00 0.00 0.00 2.27
64 65 2.997986 CGGGTTACTAATGACGCACTTT 59.002 45.455 0.00 0.00 0.00 2.66
65 66 2.613691 CGGGTTACTAATGACGCACTT 58.386 47.619 0.00 0.00 0.00 3.16
66 67 1.134907 CCGGGTTACTAATGACGCACT 60.135 52.381 0.00 0.00 0.00 4.40
67 68 1.135024 TCCGGGTTACTAATGACGCAC 60.135 52.381 0.00 0.00 0.00 5.34
68 69 1.135527 CTCCGGGTTACTAATGACGCA 59.864 52.381 0.00 0.00 0.00 5.24
69 70 1.849097 CTCCGGGTTACTAATGACGC 58.151 55.000 0.00 0.00 0.00 5.19
70 71 1.135527 TGCTCCGGGTTACTAATGACG 59.864 52.381 0.00 0.00 0.00 4.35
71 72 2.973694 TGCTCCGGGTTACTAATGAC 57.026 50.000 0.00 0.00 0.00 3.06
72 73 4.039973 CCTTATGCTCCGGGTTACTAATGA 59.960 45.833 0.00 0.00 0.00 2.57
73 74 4.202326 ACCTTATGCTCCGGGTTACTAATG 60.202 45.833 0.00 0.00 0.00 1.90
74 75 3.971971 ACCTTATGCTCCGGGTTACTAAT 59.028 43.478 0.00 0.00 0.00 1.73
75 76 3.377573 ACCTTATGCTCCGGGTTACTAA 58.622 45.455 0.00 0.00 0.00 2.24
76 77 3.036452 ACCTTATGCTCCGGGTTACTA 57.964 47.619 0.00 0.00 0.00 1.82
77 78 1.875488 ACCTTATGCTCCGGGTTACT 58.125 50.000 0.00 0.00 0.00 2.24
78 79 2.431782 TGTACCTTATGCTCCGGGTTAC 59.568 50.000 0.00 0.00 33.74 2.50
79 80 2.431782 GTGTACCTTATGCTCCGGGTTA 59.568 50.000 0.00 0.00 33.74 2.85
80 81 1.208776 GTGTACCTTATGCTCCGGGTT 59.791 52.381 0.00 0.00 33.74 4.11
81 82 0.828677 GTGTACCTTATGCTCCGGGT 59.171 55.000 0.00 0.00 36.02 5.28
82 83 0.828022 TGTGTACCTTATGCTCCGGG 59.172 55.000 0.00 0.00 0.00 5.73
83 84 2.483876 CATGTGTACCTTATGCTCCGG 58.516 52.381 0.00 0.00 0.00 5.14
84 85 2.483876 CCATGTGTACCTTATGCTCCG 58.516 52.381 0.00 0.00 0.00 4.63
85 86 2.222027 GCCATGTGTACCTTATGCTCC 58.778 52.381 0.00 0.00 0.00 4.70
86 87 2.222027 GGCCATGTGTACCTTATGCTC 58.778 52.381 0.00 0.00 0.00 4.26
87 88 1.133792 GGGCCATGTGTACCTTATGCT 60.134 52.381 4.39 0.00 0.00 3.79
88 89 1.318576 GGGCCATGTGTACCTTATGC 58.681 55.000 4.39 0.00 0.00 3.14
89 90 1.494721 AGGGGCCATGTGTACCTTATG 59.505 52.381 4.39 0.00 0.00 1.90
90 91 1.907240 AGGGGCCATGTGTACCTTAT 58.093 50.000 4.39 0.00 0.00 1.73
91 92 1.283613 CAAGGGGCCATGTGTACCTTA 59.716 52.381 4.39 0.00 39.40 2.69
92 93 0.039618 CAAGGGGCCATGTGTACCTT 59.960 55.000 4.39 2.74 41.97 3.50
93 94 1.691219 CAAGGGGCCATGTGTACCT 59.309 57.895 4.39 0.00 0.00 3.08
94 95 1.379843 CCAAGGGGCCATGTGTACC 60.380 63.158 4.39 0.00 0.00 3.34
95 96 0.394352 CTCCAAGGGGCCATGTGTAC 60.394 60.000 4.39 0.00 0.00 2.90
96 97 0.844661 ACTCCAAGGGGCCATGTGTA 60.845 55.000 4.39 0.00 0.00 2.90
97 98 0.844661 TACTCCAAGGGGCCATGTGT 60.845 55.000 4.39 7.64 0.00 3.72
98 99 0.331278 TTACTCCAAGGGGCCATGTG 59.669 55.000 4.39 0.00 0.00 3.21
99 100 0.331616 GTTACTCCAAGGGGCCATGT 59.668 55.000 4.39 0.00 0.00 3.21
100 101 0.331278 TGTTACTCCAAGGGGCCATG 59.669 55.000 4.39 3.34 0.00 3.66
101 102 0.625849 CTGTTACTCCAAGGGGCCAT 59.374 55.000 4.39 0.00 0.00 4.40
102 103 2.074967 CTGTTACTCCAAGGGGCCA 58.925 57.895 4.39 0.00 0.00 5.36
103 104 1.378646 GCTGTTACTCCAAGGGGCC 60.379 63.158 0.00 0.00 0.00 5.80
104 105 0.251165 TTGCTGTTACTCCAAGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
105 106 2.094675 CATTGCTGTTACTCCAAGGGG 58.905 52.381 0.00 0.00 0.00 4.79
106 107 2.094675 CCATTGCTGTTACTCCAAGGG 58.905 52.381 5.30 5.30 34.63 3.95
107 108 1.474077 GCCATTGCTGTTACTCCAAGG 59.526 52.381 0.00 0.00 33.53 3.61
108 109 1.131126 CGCCATTGCTGTTACTCCAAG 59.869 52.381 0.00 0.00 34.43 3.61
109 110 1.164411 CGCCATTGCTGTTACTCCAA 58.836 50.000 0.00 0.00 34.43 3.53
110 111 1.305219 GCGCCATTGCTGTTACTCCA 61.305 55.000 0.00 0.00 34.43 3.86
111 112 1.305219 TGCGCCATTGCTGTTACTCC 61.305 55.000 4.18 0.00 35.36 3.85
112 113 0.179189 GTGCGCCATTGCTGTTACTC 60.179 55.000 4.18 0.00 35.36 2.59
113 114 0.606401 AGTGCGCCATTGCTGTTACT 60.606 50.000 4.18 0.00 35.36 2.24
114 115 0.240945 AAGTGCGCCATTGCTGTTAC 59.759 50.000 4.18 0.00 35.36 2.50
115 116 0.521291 GAAGTGCGCCATTGCTGTTA 59.479 50.000 4.18 0.00 35.36 2.41
116 117 1.174712 AGAAGTGCGCCATTGCTGTT 61.175 50.000 4.18 0.00 35.36 3.16
117 118 1.601759 AGAAGTGCGCCATTGCTGT 60.602 52.632 4.18 0.00 35.36 4.40
118 119 1.154093 CAGAAGTGCGCCATTGCTG 60.154 57.895 4.18 0.03 35.36 4.41
119 120 2.338015 CCAGAAGTGCGCCATTGCT 61.338 57.895 4.18 0.00 35.36 3.91
120 121 2.180017 CCAGAAGTGCGCCATTGC 59.820 61.111 4.18 0.00 0.00 3.56
121 122 2.879907 CCCAGAAGTGCGCCATTG 59.120 61.111 4.18 0.00 0.00 2.82
122 123 3.064324 GCCCAGAAGTGCGCCATT 61.064 61.111 4.18 0.00 0.00 3.16
125 126 4.096003 TAGGCCCAGAAGTGCGCC 62.096 66.667 4.18 0.00 46.67 6.53
126 127 1.956629 TACTAGGCCCAGAAGTGCGC 61.957 60.000 4.75 0.00 0.00 6.09
127 128 0.535335 TTACTAGGCCCAGAAGTGCG 59.465 55.000 4.75 0.00 0.00 5.34
128 129 2.565841 CATTACTAGGCCCAGAAGTGC 58.434 52.381 4.75 0.00 0.00 4.40
129 130 2.746472 GCCATTACTAGGCCCAGAAGTG 60.746 54.545 4.75 0.00 46.50 3.16
130 131 1.490910 GCCATTACTAGGCCCAGAAGT 59.509 52.381 4.75 3.98 46.50 3.01
131 132 2.262423 GCCATTACTAGGCCCAGAAG 57.738 55.000 4.75 0.00 46.50 2.85
139 140 2.544267 GCTAAAGTGCGCCATTACTAGG 59.456 50.000 4.18 0.00 0.00 3.02
140 141 3.246226 CAGCTAAAGTGCGCCATTACTAG 59.754 47.826 4.18 0.00 38.13 2.57
141 142 3.194861 CAGCTAAAGTGCGCCATTACTA 58.805 45.455 4.18 0.00 38.13 1.82
142 143 2.009774 CAGCTAAAGTGCGCCATTACT 58.990 47.619 4.18 0.00 38.13 2.24
143 144 1.531883 GCAGCTAAAGTGCGCCATTAC 60.532 52.381 4.18 0.00 38.13 1.89
144 145 0.732571 GCAGCTAAAGTGCGCCATTA 59.267 50.000 4.18 0.34 38.13 1.90
145 146 1.508088 GCAGCTAAAGTGCGCCATT 59.492 52.632 4.18 0.00 38.13 3.16
146 147 2.409870 GGCAGCTAAAGTGCGCCAT 61.410 57.895 4.18 0.00 45.09 4.40
147 148 3.055719 GGCAGCTAAAGTGCGCCA 61.056 61.111 4.18 0.00 45.09 5.69
148 149 3.815396 GGGCAGCTAAAGTGCGCC 61.815 66.667 4.18 11.64 45.53 6.53
150 151 1.331756 CTAATGGGCAGCTAAAGTGCG 59.668 52.381 0.00 0.00 42.19 5.34
151 152 2.098117 CACTAATGGGCAGCTAAAGTGC 59.902 50.000 0.00 0.00 40.42 4.40
152 153 3.347216 ACACTAATGGGCAGCTAAAGTG 58.653 45.455 10.41 10.41 38.97 3.16
153 154 3.264450 AGACACTAATGGGCAGCTAAAGT 59.736 43.478 0.00 0.00 0.00 2.66
154 155 3.624861 CAGACACTAATGGGCAGCTAAAG 59.375 47.826 0.00 0.00 0.00 1.85
155 156 3.609853 CAGACACTAATGGGCAGCTAAA 58.390 45.455 0.00 0.00 0.00 1.85
156 157 2.092968 CCAGACACTAATGGGCAGCTAA 60.093 50.000 0.00 0.00 32.63 3.09
157 158 1.486310 CCAGACACTAATGGGCAGCTA 59.514 52.381 0.00 0.00 32.63 3.32
158 159 0.254178 CCAGACACTAATGGGCAGCT 59.746 55.000 0.00 0.00 32.63 4.24
159 160 2.785868 CCAGACACTAATGGGCAGC 58.214 57.895 0.00 0.00 32.63 5.25
164 165 7.324178 GCTATTACTATCCCAGACACTAATGG 58.676 42.308 0.00 0.00 36.27 3.16
165 166 7.030165 CGCTATTACTATCCCAGACACTAATG 58.970 42.308 0.00 0.00 0.00 1.90
166 167 6.350277 GCGCTATTACTATCCCAGACACTAAT 60.350 42.308 0.00 0.00 0.00 1.73
167 168 5.048224 GCGCTATTACTATCCCAGACACTAA 60.048 44.000 0.00 0.00 0.00 2.24
168 169 4.458295 GCGCTATTACTATCCCAGACACTA 59.542 45.833 0.00 0.00 0.00 2.74
169 170 3.256136 GCGCTATTACTATCCCAGACACT 59.744 47.826 0.00 0.00 0.00 3.55
170 171 3.005472 TGCGCTATTACTATCCCAGACAC 59.995 47.826 9.73 0.00 0.00 3.67
171 172 3.227614 TGCGCTATTACTATCCCAGACA 58.772 45.455 9.73 0.00 0.00 3.41
172 173 3.936372 TGCGCTATTACTATCCCAGAC 57.064 47.619 9.73 0.00 0.00 3.51
173 174 3.639561 TGTTGCGCTATTACTATCCCAGA 59.360 43.478 9.73 0.00 0.00 3.86
174 175 3.990092 TGTTGCGCTATTACTATCCCAG 58.010 45.455 9.73 0.00 0.00 4.45
175 176 3.244078 CCTGTTGCGCTATTACTATCCCA 60.244 47.826 9.73 0.00 0.00 4.37
176 177 3.244112 ACCTGTTGCGCTATTACTATCCC 60.244 47.826 9.73 0.00 0.00 3.85
177 178 3.741344 CACCTGTTGCGCTATTACTATCC 59.259 47.826 9.73 0.00 0.00 2.59
178 179 3.741344 CCACCTGTTGCGCTATTACTATC 59.259 47.826 9.73 0.00 0.00 2.08
179 180 3.134081 ACCACCTGTTGCGCTATTACTAT 59.866 43.478 9.73 0.00 0.00 2.12
180 181 2.498481 ACCACCTGTTGCGCTATTACTA 59.502 45.455 9.73 0.00 0.00 1.82
181 182 1.278127 ACCACCTGTTGCGCTATTACT 59.722 47.619 9.73 0.00 0.00 2.24
182 183 1.396996 CACCACCTGTTGCGCTATTAC 59.603 52.381 9.73 2.11 0.00 1.89
183 184 1.732941 CACCACCTGTTGCGCTATTA 58.267 50.000 9.73 0.00 0.00 0.98
184 185 1.586154 GCACCACCTGTTGCGCTATT 61.586 55.000 9.73 0.00 0.00 1.73
185 186 2.040544 GCACCACCTGTTGCGCTAT 61.041 57.895 9.73 0.00 0.00 2.97
186 187 2.668212 GCACCACCTGTTGCGCTA 60.668 61.111 9.73 0.00 0.00 4.26
198 199 0.321996 TACATAACAGTGGCGCACCA 59.678 50.000 10.83 0.00 46.51 4.17
199 200 1.006832 CTACATAACAGTGGCGCACC 58.993 55.000 10.83 0.00 34.49 5.01
200 201 2.004583 TCTACATAACAGTGGCGCAC 57.995 50.000 10.83 5.73 34.10 5.34
201 202 2.979814 ATCTACATAACAGTGGCGCA 57.020 45.000 10.83 0.00 0.00 6.09
202 203 4.569162 TGTTAATCTACATAACAGTGGCGC 59.431 41.667 0.00 0.00 38.10 6.53
203 204 6.656314 TTGTTAATCTACATAACAGTGGCG 57.344 37.500 0.00 0.00 42.40 5.69
206 207 7.125755 CGCCATTGTTAATCTACATAACAGTG 58.874 38.462 12.30 12.30 44.22 3.66
207 208 6.238374 GCGCCATTGTTAATCTACATAACAGT 60.238 38.462 0.00 0.00 42.40 3.55
208 209 6.136071 GCGCCATTGTTAATCTACATAACAG 58.864 40.000 0.00 0.00 42.40 3.16
209 210 5.586643 TGCGCCATTGTTAATCTACATAACA 59.413 36.000 4.18 0.00 40.48 2.41
210 211 5.907391 GTGCGCCATTGTTAATCTACATAAC 59.093 40.000 4.18 0.00 34.55 1.89
211 212 5.008217 GGTGCGCCATTGTTAATCTACATAA 59.992 40.000 12.58 0.00 34.09 1.90
212 213 4.513692 GGTGCGCCATTGTTAATCTACATA 59.486 41.667 12.58 0.00 34.09 2.29
213 214 3.315191 GGTGCGCCATTGTTAATCTACAT 59.685 43.478 12.58 0.00 34.09 2.29
214 215 2.680841 GGTGCGCCATTGTTAATCTACA 59.319 45.455 12.58 0.00 34.09 2.74
215 216 2.680841 TGGTGCGCCATTGTTAATCTAC 59.319 45.455 16.89 0.00 40.46 2.59
216 217 2.942376 CTGGTGCGCCATTGTTAATCTA 59.058 45.455 21.54 0.00 45.05 1.98
217 218 1.745087 CTGGTGCGCCATTGTTAATCT 59.255 47.619 21.54 0.00 45.05 2.40
218 219 1.472480 ACTGGTGCGCCATTGTTAATC 59.528 47.619 21.54 0.00 45.05 1.75
219 220 1.472480 GACTGGTGCGCCATTGTTAAT 59.528 47.619 21.54 0.00 45.05 1.40
220 221 0.878416 GACTGGTGCGCCATTGTTAA 59.122 50.000 21.54 0.00 45.05 2.01
221 222 1.295357 CGACTGGTGCGCCATTGTTA 61.295 55.000 21.54 0.00 45.05 2.41
222 223 2.616330 CGACTGGTGCGCCATTGTT 61.616 57.895 21.54 4.38 45.05 2.83
223 224 3.049674 CGACTGGTGCGCCATTGT 61.050 61.111 21.54 15.62 45.05 2.71
224 225 3.049674 ACGACTGGTGCGCCATTG 61.050 61.111 21.54 14.74 45.05 2.82
225 226 3.049674 CACGACTGGTGCGCCATT 61.050 61.111 21.54 15.30 45.05 3.16
233 234 1.740296 GTAATGGCGCACGACTGGT 60.740 57.895 10.83 0.00 0.00 4.00
234 235 0.179121 TAGTAATGGCGCACGACTGG 60.179 55.000 10.83 0.00 0.00 4.00
235 236 1.852942 ATAGTAATGGCGCACGACTG 58.147 50.000 10.83 0.00 0.00 3.51
236 237 2.596904 AATAGTAATGGCGCACGACT 57.403 45.000 10.83 9.23 0.00 4.18
237 238 4.985044 ATAAATAGTAATGGCGCACGAC 57.015 40.909 10.83 0.67 0.00 4.34
238 239 6.218019 ACTAATAAATAGTAATGGCGCACGA 58.782 36.000 10.83 0.00 43.16 4.35
239 240 6.462073 ACTAATAAATAGTAATGGCGCACG 57.538 37.500 10.83 0.00 43.16 5.34
240 241 8.433126 CACTACTAATAAATAGTAATGGCGCAC 58.567 37.037 10.83 0.00 44.50 5.34
241 242 8.528917 CACTACTAATAAATAGTAATGGCGCA 57.471 34.615 10.83 0.00 44.50 6.09
246 247 9.687210 TCACGCCACTACTAATAAATAGTAATG 57.313 33.333 0.00 0.00 44.50 1.90
254 255 9.687210 CACTATTATCACGCCACTACTAATAAA 57.313 33.333 0.00 0.00 0.00 1.40
255 256 8.301720 CCACTATTATCACGCCACTACTAATAA 58.698 37.037 0.00 0.00 0.00 1.40
256 257 7.576287 GCCACTATTATCACGCCACTACTAATA 60.576 40.741 0.00 0.00 0.00 0.98
257 258 6.688578 CCACTATTATCACGCCACTACTAAT 58.311 40.000 0.00 0.00 0.00 1.73
258 259 5.508489 GCCACTATTATCACGCCACTACTAA 60.508 44.000 0.00 0.00 0.00 2.24
259 260 4.022589 GCCACTATTATCACGCCACTACTA 60.023 45.833 0.00 0.00 0.00 1.82
260 261 3.243771 GCCACTATTATCACGCCACTACT 60.244 47.826 0.00 0.00 0.00 2.57
261 262 3.057734 GCCACTATTATCACGCCACTAC 58.942 50.000 0.00 0.00 0.00 2.73
262 263 2.287970 CGCCACTATTATCACGCCACTA 60.288 50.000 0.00 0.00 0.00 2.74
263 264 1.538204 CGCCACTATTATCACGCCACT 60.538 52.381 0.00 0.00 0.00 4.00
264 265 0.859232 CGCCACTATTATCACGCCAC 59.141 55.000 0.00 0.00 0.00 5.01
265 266 0.878523 GCGCCACTATTATCACGCCA 60.879 55.000 0.00 0.00 40.43 5.69
266 267 0.878523 TGCGCCACTATTATCACGCC 60.879 55.000 4.18 0.00 45.32 5.68
267 268 1.126846 GATGCGCCACTATTATCACGC 59.873 52.381 4.18 0.00 46.05 5.34
268 269 2.677199 AGATGCGCCACTATTATCACG 58.323 47.619 4.18 0.00 0.00 4.35
269 270 6.473778 CACTATAGATGCGCCACTATTATCAC 59.526 42.308 21.98 0.00 32.57 3.06
270 271 6.564328 CACTATAGATGCGCCACTATTATCA 58.436 40.000 21.98 8.87 32.57 2.15
271 272 5.460419 GCACTATAGATGCGCCACTATTATC 59.540 44.000 21.98 10.31 32.45 1.75
272 273 5.352284 GCACTATAGATGCGCCACTATTAT 58.648 41.667 21.98 12.04 32.45 1.28
273 274 4.744570 GCACTATAGATGCGCCACTATTA 58.255 43.478 21.98 11.44 32.45 0.98
274 275 3.589988 GCACTATAGATGCGCCACTATT 58.410 45.455 21.98 8.37 32.45 1.73
275 276 3.238108 GCACTATAGATGCGCCACTAT 57.762 47.619 21.05 21.05 32.45 2.12
276 277 2.724977 GCACTATAGATGCGCCACTA 57.275 50.000 4.18 9.11 32.45 2.74
277 278 3.595691 GCACTATAGATGCGCCACT 57.404 52.632 4.18 6.83 32.45 4.00
283 284 6.613233 ACTACTAATGACGCACTATAGATGC 58.387 40.000 6.78 11.36 39.81 3.91
284 285 7.807680 TGACTACTAATGACGCACTATAGATG 58.192 38.462 6.78 2.50 0.00 2.90
285 286 7.981102 TGACTACTAATGACGCACTATAGAT 57.019 36.000 6.78 0.00 0.00 1.98
286 287 7.797038 TTGACTACTAATGACGCACTATAGA 57.203 36.000 6.78 0.00 0.00 1.98
287 288 8.851960 TTTTGACTACTAATGACGCACTATAG 57.148 34.615 0.00 0.00 0.00 1.31
289 290 9.464714 CTATTTTGACTACTAATGACGCACTAT 57.535 33.333 0.00 0.00 0.00 2.12
290 291 8.680001 TCTATTTTGACTACTAATGACGCACTA 58.320 33.333 0.00 0.00 0.00 2.74
291 292 7.544622 TCTATTTTGACTACTAATGACGCACT 58.455 34.615 0.00 0.00 0.00 4.40
292 293 7.751047 TCTATTTTGACTACTAATGACGCAC 57.249 36.000 0.00 0.00 0.00 5.34
293 294 7.042725 GCATCTATTTTGACTACTAATGACGCA 60.043 37.037 0.00 0.00 0.00 5.24
294 295 7.284351 GCATCTATTTTGACTACTAATGACGC 58.716 38.462 0.00 0.00 0.00 5.19
295 296 7.494130 CGCATCTATTTTGACTACTAATGACG 58.506 38.462 0.00 0.00 0.00 4.35
296 297 7.284351 GCGCATCTATTTTGACTACTAATGAC 58.716 38.462 0.30 0.00 0.00 3.06
297 298 6.423905 GGCGCATCTATTTTGACTACTAATGA 59.576 38.462 10.83 0.00 0.00 2.57
298 299 6.202762 TGGCGCATCTATTTTGACTACTAATG 59.797 38.462 10.83 0.00 0.00 1.90
299 300 6.202954 GTGGCGCATCTATTTTGACTACTAAT 59.797 38.462 10.83 0.00 0.00 1.73
300 301 5.522460 GTGGCGCATCTATTTTGACTACTAA 59.478 40.000 10.83 0.00 0.00 2.24
301 302 5.047847 GTGGCGCATCTATTTTGACTACTA 58.952 41.667 10.83 0.00 0.00 1.82
302 303 3.871594 GTGGCGCATCTATTTTGACTACT 59.128 43.478 10.83 0.00 0.00 2.57
303 304 3.871594 AGTGGCGCATCTATTTTGACTAC 59.128 43.478 10.83 0.00 0.00 2.73
304 305 4.137116 AGTGGCGCATCTATTTTGACTA 57.863 40.909 10.83 0.00 0.00 2.59
305 306 2.991250 AGTGGCGCATCTATTTTGACT 58.009 42.857 10.83 0.00 0.00 3.41
306 307 4.094294 TGTTAGTGGCGCATCTATTTTGAC 59.906 41.667 10.83 6.36 0.00 3.18
307 308 4.257731 TGTTAGTGGCGCATCTATTTTGA 58.742 39.130 10.83 0.00 0.00 2.69
308 309 4.591202 CTGTTAGTGGCGCATCTATTTTG 58.409 43.478 10.83 0.00 0.00 2.44
309 310 3.065371 GCTGTTAGTGGCGCATCTATTTT 59.935 43.478 10.83 0.00 0.00 1.82
310 311 2.614057 GCTGTTAGTGGCGCATCTATTT 59.386 45.455 10.83 0.00 0.00 1.40
311 312 2.213499 GCTGTTAGTGGCGCATCTATT 58.787 47.619 10.83 0.00 0.00 1.73
312 313 1.541233 GGCTGTTAGTGGCGCATCTAT 60.541 52.381 10.83 0.00 0.00 1.98
313 314 0.179084 GGCTGTTAGTGGCGCATCTA 60.179 55.000 10.83 8.28 0.00 1.98
314 315 1.450312 GGCTGTTAGTGGCGCATCT 60.450 57.895 10.83 9.40 0.00 2.90
315 316 1.026718 AAGGCTGTTAGTGGCGCATC 61.027 55.000 10.83 0.41 35.01 3.91
316 317 0.609131 AAAGGCTGTTAGTGGCGCAT 60.609 50.000 10.83 0.00 35.01 4.73
317 318 0.821711 AAAAGGCTGTTAGTGGCGCA 60.822 50.000 10.83 0.00 35.01 6.09
318 319 0.313987 AAAAAGGCTGTTAGTGGCGC 59.686 50.000 0.00 0.00 35.01 6.53
319 320 1.880027 AGAAAAAGGCTGTTAGTGGCG 59.120 47.619 0.00 0.00 35.01 5.69
320 321 5.644977 ATTAGAAAAAGGCTGTTAGTGGC 57.355 39.130 0.00 0.00 0.00 5.01
321 322 7.606456 TCACTATTAGAAAAAGGCTGTTAGTGG 59.394 37.037 13.25 0.07 35.33 4.00
322 323 8.443937 GTCACTATTAGAAAAAGGCTGTTAGTG 58.556 37.037 8.76 8.76 35.60 2.74
323 324 7.606839 GGTCACTATTAGAAAAAGGCTGTTAGT 59.393 37.037 0.00 0.00 0.00 2.24
324 325 7.606456 TGGTCACTATTAGAAAAAGGCTGTTAG 59.394 37.037 0.00 0.00 0.00 2.34
325 326 7.455058 TGGTCACTATTAGAAAAAGGCTGTTA 58.545 34.615 0.00 0.00 0.00 2.41
326 327 6.303839 TGGTCACTATTAGAAAAAGGCTGTT 58.696 36.000 0.00 0.00 0.00 3.16
327 328 5.876357 TGGTCACTATTAGAAAAAGGCTGT 58.124 37.500 0.00 0.00 0.00 4.40
328 329 6.825721 AGATGGTCACTATTAGAAAAAGGCTG 59.174 38.462 0.00 0.00 0.00 4.85
329 330 6.963322 AGATGGTCACTATTAGAAAAAGGCT 58.037 36.000 0.00 0.00 0.00 4.58
330 331 8.732746 TTAGATGGTCACTATTAGAAAAAGGC 57.267 34.615 0.00 0.00 0.00 4.35
335 336 9.679661 TGCAAATTAGATGGTCACTATTAGAAA 57.320 29.630 0.00 0.00 0.00 2.52
336 337 9.851686 ATGCAAATTAGATGGTCACTATTAGAA 57.148 29.630 0.00 0.00 0.00 2.10
337 338 9.276590 CATGCAAATTAGATGGTCACTATTAGA 57.723 33.333 0.00 0.00 0.00 2.10
338 339 8.019669 GCATGCAAATTAGATGGTCACTATTAG 58.980 37.037 14.21 0.00 0.00 1.73
339 340 7.501892 TGCATGCAAATTAGATGGTCACTATTA 59.498 33.333 20.30 0.00 0.00 0.98
340 341 6.321945 TGCATGCAAATTAGATGGTCACTATT 59.678 34.615 20.30 0.00 0.00 1.73
341 342 5.829391 TGCATGCAAATTAGATGGTCACTAT 59.171 36.000 20.30 0.00 0.00 2.12
342 343 5.066375 GTGCATGCAAATTAGATGGTCACTA 59.934 40.000 24.58 0.00 0.00 2.74
343 344 4.018490 TGCATGCAAATTAGATGGTCACT 58.982 39.130 20.30 0.00 0.00 3.41
344 345 4.107622 GTGCATGCAAATTAGATGGTCAC 58.892 43.478 24.58 0.03 0.00 3.67
345 346 3.762823 TGTGCATGCAAATTAGATGGTCA 59.237 39.130 24.58 8.60 0.00 4.02
346 347 4.374843 TGTGCATGCAAATTAGATGGTC 57.625 40.909 24.58 5.73 0.00 4.02
354 355 6.425721 GCCTGATATTAATGTGCATGCAAATT 59.574 34.615 32.90 32.90 37.59 1.82
389 390 9.338291 GCATGCAGTTTGATCACTAATAATATG 57.662 33.333 14.21 0.00 0.00 1.78
390 391 9.070179 TGCATGCAGTTTGATCACTAATAATAT 57.930 29.630 18.46 0.00 0.00 1.28
391 392 8.449251 TGCATGCAGTTTGATCACTAATAATA 57.551 30.769 18.46 0.00 0.00 0.98
392 393 7.337480 TGCATGCAGTTTGATCACTAATAAT 57.663 32.000 18.46 0.00 0.00 1.28
393 394 6.756299 TGCATGCAGTTTGATCACTAATAA 57.244 33.333 18.46 0.00 0.00 1.40
394 395 6.947644 ATGCATGCAGTTTGATCACTAATA 57.052 33.333 26.69 0.00 0.00 0.98
395 396 5.847111 ATGCATGCAGTTTGATCACTAAT 57.153 34.783 26.69 0.11 0.00 1.73
396 397 5.183522 TGAATGCATGCAGTTTGATCACTAA 59.816 36.000 26.69 0.00 0.00 2.24
417 418 3.716872 AGTCCAAGGGAAAGAACTCTGAA 59.283 43.478 0.00 0.00 31.38 3.02
453 454 5.192327 CTTCGTATATGGTTTACGGAGGT 57.808 43.478 4.07 0.00 42.42 3.85
614 619 0.950836 TCACGTGATTTGTTGCAGGG 59.049 50.000 15.76 0.00 0.00 4.45
707 714 8.574251 TGAGCTAAAAACTCTTGGCAATATTA 57.426 30.769 0.00 0.00 35.40 0.98
753 760 3.000727 CACCAACTCGAAATGTACCCTC 58.999 50.000 0.00 0.00 0.00 4.30
831 838 6.774354 AACAAAATCTGTACAACGTACGAT 57.226 33.333 24.41 7.40 37.23 3.73
880 1196 1.878953 AAACAGAAGATTCGCACCGT 58.121 45.000 0.00 0.00 0.00 4.83
882 1198 2.093783 CGGTAAACAGAAGATTCGCACC 59.906 50.000 0.00 0.00 0.00 5.01
1083 1400 4.278975 ACCTTCAGTCAATTGGAGAGAC 57.721 45.455 5.42 0.00 0.00 3.36
1205 1522 7.545965 TCTGCTCAGTTGCTTAAGTAAGATTAC 59.454 37.037 6.21 0.00 35.33 1.89
1206 1523 7.611770 TCTGCTCAGTTGCTTAAGTAAGATTA 58.388 34.615 6.21 0.00 35.33 1.75
1323 1670 6.884295 AGAATCTGAAATGTCCGGTTCAATAA 59.116 34.615 0.00 0.00 33.52 1.40
1335 1682 5.759059 TGCTTCCCATAGAATCTGAAATGT 58.241 37.500 0.00 0.00 32.82 2.71
1597 2942 1.299976 CTTGAACCTAGCCCGGCTT 59.700 57.895 19.35 0.00 40.44 4.35
1599 2944 2.824489 GCTTGAACCTAGCCCGGC 60.824 66.667 0.00 0.00 32.45 6.13
1601 2946 0.460987 CAGAGCTTGAACCTAGCCCG 60.461 60.000 0.00 0.00 39.47 6.13
1603 2948 0.251634 AGCAGAGCTTGAACCTAGCC 59.748 55.000 0.00 0.00 39.47 3.93
1604 2949 1.650825 GAGCAGAGCTTGAACCTAGC 58.349 55.000 0.00 0.00 39.88 3.42
1605 2950 1.470632 CCGAGCAGAGCTTGAACCTAG 60.471 57.143 7.80 0.00 42.27 3.02
1606 2951 0.532573 CCGAGCAGAGCTTGAACCTA 59.467 55.000 7.80 0.00 42.27 3.08
1607 2952 1.188219 TCCGAGCAGAGCTTGAACCT 61.188 55.000 7.80 0.00 42.27 3.50
1608 2953 1.016653 GTCCGAGCAGAGCTTGAACC 61.017 60.000 7.80 0.00 42.27 3.62
1609 2954 0.037790 AGTCCGAGCAGAGCTTGAAC 60.038 55.000 7.80 0.00 42.27 3.18
1610 2955 0.244994 GAGTCCGAGCAGAGCTTGAA 59.755 55.000 7.80 0.00 42.27 2.69
1611 2956 1.886585 GAGTCCGAGCAGAGCTTGA 59.113 57.895 7.80 0.00 42.27 3.02
1612 2957 1.515952 CGAGTCCGAGCAGAGCTTG 60.516 63.158 0.00 0.00 39.88 4.01
1613 2958 2.705821 CCGAGTCCGAGCAGAGCTT 61.706 63.158 0.00 0.00 39.88 3.74
1614 2959 3.137459 CCGAGTCCGAGCAGAGCT 61.137 66.667 0.00 0.00 43.88 4.09
1615 2960 4.863925 GCCGAGTCCGAGCAGAGC 62.864 72.222 0.00 0.00 38.22 4.09
1616 2961 4.200283 GGCCGAGTCCGAGCAGAG 62.200 72.222 0.00 0.00 38.22 3.35
1631 2976 1.303091 TTTAGAGAAAAGGCGCCGGC 61.303 55.000 23.20 19.07 38.90 6.13
1632 2977 1.161843 TTTTAGAGAAAAGGCGCCGG 58.838 50.000 23.20 0.00 30.89 6.13
1633 2978 2.981400 TTTTTAGAGAAAAGGCGCCG 57.019 45.000 23.20 0.00 35.96 6.46
1674 3025 3.561313 GGTCTTGCTCCAAAATAGTGGGA 60.561 47.826 0.00 0.00 39.34 4.37
1703 3056 5.008514 TGCATACGAAACCACATGGATATTG 59.991 40.000 4.53 0.00 38.94 1.90
1715 3068 3.685058 GCAAGAAGATGCATACGAAACC 58.315 45.455 0.00 0.00 45.70 3.27
1726 3093 3.686726 GGTTACTCACCTGCAAGAAGATG 59.313 47.826 0.00 0.00 43.29 2.90
1998 3383 2.172483 ATTGCTCTGCGAGGTCGGTT 62.172 55.000 0.89 0.00 40.23 4.44
2029 3448 3.962557 CTCCCTCGAGCCAGGAAT 58.037 61.111 6.99 0.00 35.20 3.01
2091 3537 2.236223 CTCGTGCAGAGCATCCCTGT 62.236 60.000 0.00 0.00 41.91 4.00
2503 3964 8.454859 ACCACCTCTGTTCATGGATATATATT 57.545 34.615 0.00 0.00 36.04 1.28
2512 4037 1.275291 ACGTACCACCTCTGTTCATGG 59.725 52.381 0.00 0.00 38.26 3.66
2541 4251 1.806496 TACCTGACCAGCCTATGCAT 58.194 50.000 3.79 3.79 41.13 3.96
2553 4263 6.151144 AGCAAACCATAATGTCTTTACCTGAC 59.849 38.462 0.00 0.00 35.21 3.51
2658 4368 2.701551 TCGGGATTCCCTCCATGTAAT 58.298 47.619 19.63 0.00 46.98 1.89
2675 4385 7.639945 AGTCTGTTGAAGATTTAAAGTTTCGG 58.360 34.615 0.00 0.00 37.23 4.30
2719 4430 0.549950 CATCAGCCTGGGAGGTCATT 59.450 55.000 0.00 0.00 37.80 2.57
2722 4436 0.179936 CTTCATCAGCCTGGGAGGTC 59.820 60.000 0.00 0.00 37.80 3.85
2971 6107 3.146066 TGTATCGATAGCCATTTTGCCC 58.854 45.455 5.09 0.00 0.00 5.36
3036 6175 0.878416 GTCGCAAACTGGCCACATTA 59.122 50.000 0.00 0.00 0.00 1.90
3047 6187 3.244814 TGATGCAAACATTTGTCGCAAAC 59.755 39.130 10.59 8.97 40.24 2.93
3097 6247 7.138692 ACATGTGTTATTGAAGAAAGAGAGC 57.861 36.000 0.00 0.00 0.00 4.09
3220 6374 8.368962 ACCCCGAAATTTATTTGGATTTCTTA 57.631 30.769 0.00 0.00 39.14 2.10
3236 6390 3.267483 CAAGTTCATACGACCCCGAAAT 58.733 45.455 0.00 0.00 39.50 2.17
3241 6395 2.380081 CGCAAGTTCATACGACCCC 58.620 57.895 0.00 0.00 0.00 4.95
3268 6422 7.094805 ACGCATTGATCACAATTGTAACTTAGT 60.095 33.333 11.53 1.33 43.17 2.24
3281 6435 1.271325 ACCTTCCACGCATTGATCACA 60.271 47.619 0.00 0.00 0.00 3.58
3284 6438 3.575965 AAAACCTTCCACGCATTGATC 57.424 42.857 0.00 0.00 0.00 2.92
3332 6487 3.515602 AGGCCTCCTAATAATTGCCAG 57.484 47.619 0.00 0.00 41.33 4.85
3416 6571 3.812053 TGTTGTTGTTTGCAAAGCTTTGT 59.188 34.783 33.47 2.65 40.24 2.83
3438 6593 0.882927 TGCGCAACGTTTAGCCTTCT 60.883 50.000 8.16 0.00 0.00 2.85
3449 6604 1.138459 TATGCCCATTTGCGCAACG 59.862 52.632 24.99 16.91 38.75 4.10
3474 6629 4.694760 TCCATGTGCACAGCTCTATATT 57.305 40.909 25.84 1.33 0.00 1.28
3476 6631 3.197549 TGTTCCATGTGCACAGCTCTATA 59.802 43.478 25.84 6.01 0.00 1.31
3521 8357 9.605955 CTATGTCGAATTGTTGAAAAATGTACA 57.394 29.630 0.00 0.00 0.00 2.90
3524 8360 7.594758 CCACTATGTCGAATTGTTGAAAAATGT 59.405 33.333 0.00 0.00 0.00 2.71
3530 8366 5.180492 GGAACCACTATGTCGAATTGTTGAA 59.820 40.000 0.00 0.00 0.00 2.69
3531 8367 4.693566 GGAACCACTATGTCGAATTGTTGA 59.306 41.667 0.00 0.00 0.00 3.18
3532 8368 4.454161 TGGAACCACTATGTCGAATTGTTG 59.546 41.667 0.00 0.00 0.00 3.33
3535 8371 4.600012 GTGGAACCACTATGTCGAATTG 57.400 45.455 15.69 0.00 43.12 2.32
3611 8448 3.565764 AGGCTATTACATGCAGCTGAA 57.434 42.857 20.43 7.68 35.60 3.02
3618 8456 7.560368 ACCATCTCTTATAGGCTATTACATGC 58.440 38.462 13.08 0.00 0.00 4.06
3682 8558 9.387397 TCCACCTAATACTATATGTGATTCCAA 57.613 33.333 0.00 0.00 0.00 3.53
3690 8566 6.631107 ACCACCTCCACCTAATACTATATGT 58.369 40.000 0.00 0.00 0.00 2.29
3724 8600 1.550976 CCAGAAACTAGAGGCGGTCTT 59.449 52.381 0.00 0.00 36.64 3.01
3757 8633 7.768240 ACCAAAGAAAGTTTAGAACACGAAAT 58.232 30.769 0.00 0.00 0.00 2.17
3761 8637 9.511144 AAATAACCAAAGAAAGTTTAGAACACG 57.489 29.630 0.00 0.00 0.00 4.49
3806 8682 1.696097 ATCATCGGCAGGTACACCCC 61.696 60.000 0.00 0.00 36.42 4.95
3830 8706 6.201425 GCTTCAATGTTCAACATGTTCAACAT 59.799 34.615 28.65 28.65 37.97 2.71
3832 8708 5.750067 AGCTTCAATGTTCAACATGTTCAAC 59.250 36.000 17.44 17.44 37.97 3.18
3834 8710 5.518848 AGCTTCAATGTTCAACATGTTCA 57.481 34.783 8.48 4.40 37.97 3.18
3835 8711 5.176223 CCAAGCTTCAATGTTCAACATGTTC 59.824 40.000 8.48 0.00 37.97 3.18
3836 8712 5.051816 CCAAGCTTCAATGTTCAACATGTT 58.948 37.500 3.07 4.92 37.97 2.71
3837 8713 4.624015 CCAAGCTTCAATGTTCAACATGT 58.376 39.130 3.07 0.00 37.97 3.21
3838 8714 3.430895 GCCAAGCTTCAATGTTCAACATG 59.569 43.478 3.07 0.00 37.97 3.21
3840 8716 2.429971 TGCCAAGCTTCAATGTTCAACA 59.570 40.909 0.00 0.00 0.00 3.33
3841 8717 2.796593 GTGCCAAGCTTCAATGTTCAAC 59.203 45.455 0.00 0.00 0.00 3.18
3842 8718 2.429971 TGTGCCAAGCTTCAATGTTCAA 59.570 40.909 0.00 0.00 0.00 2.69
3843 8719 2.030371 TGTGCCAAGCTTCAATGTTCA 58.970 42.857 0.00 0.00 0.00 3.18
3844 8720 2.798976 TGTGCCAAGCTTCAATGTTC 57.201 45.000 0.00 0.00 0.00 3.18
3845 8721 2.366266 ACATGTGCCAAGCTTCAATGTT 59.634 40.909 0.00 0.00 0.00 2.71
3846 8722 1.965643 ACATGTGCCAAGCTTCAATGT 59.034 42.857 0.00 3.55 0.00 2.71
3847 8723 2.734606 CAACATGTGCCAAGCTTCAATG 59.265 45.455 0.00 2.97 0.00 2.82
3848 8724 2.629137 TCAACATGTGCCAAGCTTCAAT 59.371 40.909 0.00 0.00 0.00 2.57
3849 8725 2.030371 TCAACATGTGCCAAGCTTCAA 58.970 42.857 0.00 0.00 0.00 2.69
3850 8726 1.689984 TCAACATGTGCCAAGCTTCA 58.310 45.000 0.00 0.00 0.00 3.02
3851 8727 2.223782 TGTTCAACATGTGCCAAGCTTC 60.224 45.455 0.00 0.00 0.00 3.86
3852 8728 1.755959 TGTTCAACATGTGCCAAGCTT 59.244 42.857 0.00 0.00 0.00 3.74
3853 8729 1.401761 TGTTCAACATGTGCCAAGCT 58.598 45.000 0.00 0.00 0.00 3.74
3854 8730 2.443887 ATGTTCAACATGTGCCAAGC 57.556 45.000 0.98 0.00 37.45 4.01
3872 8748 3.449018 AGCAGACTACGATGTTCCTGAAT 59.551 43.478 0.00 0.00 0.00 2.57
3877 8753 2.941453 TGAGCAGACTACGATGTTCC 57.059 50.000 0.00 0.00 0.00 3.62
3885 8761 7.040062 ACCTTGAGATACATATGAGCAGACTAC 60.040 40.741 10.38 0.00 0.00 2.73
3950 8839 0.677731 CGGTTGGAGACACATGCCAT 60.678 55.000 0.00 0.00 42.67 4.40
3973 8862 1.375396 CGGTCATTCGGTCAGCCAA 60.375 57.895 0.00 0.00 34.09 4.52
3985 8874 9.507329 AGATTCATTTATACTAATTGCGGTCAT 57.493 29.630 0.00 0.00 0.00 3.06
4058 8947 8.463607 TGGTTAAAAAGAAAACACTAGGTTCTG 58.536 33.333 0.00 0.00 39.29 3.02
4137 9040 1.300963 GAGCATCAAGGCCCACTCA 59.699 57.895 0.00 0.00 33.17 3.41
4151 9054 2.752358 CTCCACAAGGGCTGAGCA 59.248 61.111 6.82 0.00 36.21 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.