Multiple sequence alignment - TraesCS1A01G319000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G319000 chr1A 100.000 3212 0 0 1 3212 510279998 510283209 0.000000e+00 5932.0
1 TraesCS1A01G319000 chr1A 86.885 61 7 1 1365 1425 146631073 146631014 2.070000e-07 67.6
2 TraesCS1A01G319000 chr1D 90.072 2085 93 41 566 2616 413212366 413214370 0.000000e+00 2599.0
3 TraesCS1A01G319000 chr1D 96.277 376 11 2 2839 3211 413214518 413214893 5.890000e-172 614.0
4 TraesCS1A01G319000 chr1D 84.507 71 8 3 1356 1425 143362372 143362440 2.070000e-07 67.6
5 TraesCS1A01G319000 chr1B 89.234 2127 103 53 556 2616 556988932 556990998 0.000000e+00 2543.0
6 TraesCS1A01G319000 chr1B 94.105 458 20 5 2757 3211 556991086 556991539 0.000000e+00 689.0
7 TraesCS1A01G319000 chr1B 81.768 181 18 8 60 230 564918939 564918764 1.550000e-28 137.0
8 TraesCS1A01G319000 chr1B 75.691 181 25 9 60 225 271967296 271967120 4.440000e-09 73.1
9 TraesCS1A01G319000 chr1B 86.885 61 7 1 1365 1425 192534782 192534841 2.070000e-07 67.6
10 TraesCS1A01G319000 chrUn 81.768 181 17 6 60 227 345054345 345054522 1.550000e-28 137.0
11 TraesCS1A01G319000 chr2D 80.874 183 17 10 60 225 114541580 114541399 9.350000e-26 128.0
12 TraesCS1A01G319000 chr2D 79.888 179 21 6 60 227 110401902 110402076 2.020000e-22 117.0
13 TraesCS1A01G319000 chr2D 78.495 186 20 9 60 230 101884071 101884251 1.580000e-18 104.0
14 TraesCS1A01G319000 chr2D 75.661 189 23 10 60 239 458499317 458499143 4.440000e-09 73.1
15 TraesCS1A01G319000 chr7A 92.593 81 6 0 477 557 112169092 112169172 2.020000e-22 117.0
16 TraesCS1A01G319000 chr7A 93.506 77 5 0 477 553 708370958 708371034 7.280000e-22 115.0
17 TraesCS1A01G319000 chr3A 89.362 94 8 1 477 570 686257340 686257249 2.020000e-22 117.0
18 TraesCS1A01G319000 chr3A 75.581 172 33 7 60 225 608612615 608612447 3.440000e-10 76.8
19 TraesCS1A01G319000 chr3A 75.000 172 34 7 60 225 608551943 608551775 1.600000e-08 71.3
20 TraesCS1A01G319000 chr7D 91.358 81 7 0 477 557 635423379 635423299 9.420000e-21 111.0
21 TraesCS1A01G319000 chr7D 78.090 178 24 13 61 225 617975469 617975294 7.330000e-17 99.0
22 TraesCS1A01G319000 chr6A 88.889 90 7 3 474 562 54862637 54862550 1.220000e-19 108.0
23 TraesCS1A01G319000 chr6A 77.778 189 33 8 1235 1417 107686230 107686045 1.220000e-19 108.0
24 TraesCS1A01G319000 chr5A 92.105 76 6 0 483 558 536708561 536708636 1.220000e-19 108.0
25 TraesCS1A01G319000 chr2B 88.095 84 9 1 477 559 638822746 638822829 7.330000e-17 99.0
26 TraesCS1A01G319000 chr2A 87.654 81 10 0 477 557 387042695 387042775 9.490000e-16 95.3
27 TraesCS1A01G319000 chr2A 87.654 81 10 0 477 557 523879562 523879642 9.490000e-16 95.3
28 TraesCS1A01G319000 chr5D 77.011 174 31 8 60 225 480095611 480095439 1.230000e-14 91.6
29 TraesCS1A01G319000 chr4A 76.608 171 33 6 60 225 114955380 114955548 1.590000e-13 87.9
30 TraesCS1A01G319000 chr4B 73.973 219 34 17 1216 1418 139399326 139399537 2.070000e-07 67.6
31 TraesCS1A01G319000 chr4B 73.973 219 34 17 1216 1418 139472471 139472682 2.070000e-07 67.6
32 TraesCS1A01G319000 chr4D 73.786 206 35 13 1216 1408 97508808 97509007 2.680000e-06 63.9
33 TraesCS1A01G319000 chr4D 73.394 218 37 17 1216 1418 97958114 97958325 9.620000e-06 62.1
34 TraesCS1A01G319000 chr4D 73.301 206 36 13 1216 1408 97605446 97605645 1.240000e-04 58.4
35 TraesCS1A01G319000 chr4D 94.444 36 2 0 1216 1251 97720821 97720856 4.480000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G319000 chr1A 510279998 510283209 3211 False 5932.0 5932 100.0000 1 3212 1 chr1A.!!$F1 3211
1 TraesCS1A01G319000 chr1D 413212366 413214893 2527 False 1606.5 2599 93.1745 566 3211 2 chr1D.!!$F2 2645
2 TraesCS1A01G319000 chr1B 556988932 556991539 2607 False 1616.0 2543 91.6695 556 3211 2 chr1B.!!$F2 2655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 793 0.179086 CCACCAAGCAACCAACCAAC 60.179 55.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2265 2308 0.179065 GAGAACCCGATAAACCCCCG 60.179 60.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.323968 AAAACCCATGTTGCACAACC 57.676 45.000 10.82 0.00 40.46 3.77
21 22 1.494960 AAACCCATGTTGCACAACCT 58.505 45.000 10.82 0.00 40.46 3.50
22 23 1.494960 AACCCATGTTGCACAACCTT 58.505 45.000 10.82 0.00 40.46 3.50
23 24 1.494960 ACCCATGTTGCACAACCTTT 58.505 45.000 10.82 0.00 40.46 3.11
24 25 1.836802 ACCCATGTTGCACAACCTTTT 59.163 42.857 10.82 0.00 40.46 2.27
25 26 2.158971 ACCCATGTTGCACAACCTTTTC 60.159 45.455 10.82 0.00 40.46 2.29
26 27 2.102925 CCCATGTTGCACAACCTTTTCT 59.897 45.455 10.82 0.00 40.46 2.52
27 28 3.320541 CCCATGTTGCACAACCTTTTCTA 59.679 43.478 10.82 0.00 40.46 2.10
28 29 4.549458 CCATGTTGCACAACCTTTTCTAG 58.451 43.478 10.82 0.00 40.46 2.43
29 30 4.037923 CCATGTTGCACAACCTTTTCTAGT 59.962 41.667 10.82 0.00 40.46 2.57
30 31 4.630894 TGTTGCACAACCTTTTCTAGTG 57.369 40.909 10.82 0.00 40.46 2.74
31 32 4.013728 TGTTGCACAACCTTTTCTAGTGT 58.986 39.130 10.82 0.00 40.46 3.55
32 33 4.461081 TGTTGCACAACCTTTTCTAGTGTT 59.539 37.500 10.82 0.00 40.46 3.32
33 34 4.893424 TGCACAACCTTTTCTAGTGTTC 57.107 40.909 0.00 0.00 32.99 3.18
34 35 4.523083 TGCACAACCTTTTCTAGTGTTCT 58.477 39.130 0.00 0.00 32.99 3.01
35 36 4.335315 TGCACAACCTTTTCTAGTGTTCTG 59.665 41.667 0.00 0.00 32.99 3.02
36 37 4.574828 GCACAACCTTTTCTAGTGTTCTGA 59.425 41.667 0.00 0.00 32.99 3.27
37 38 5.277538 GCACAACCTTTTCTAGTGTTCTGAG 60.278 44.000 0.00 0.00 32.99 3.35
38 39 6.049149 CACAACCTTTTCTAGTGTTCTGAGA 58.951 40.000 0.00 0.00 0.00 3.27
39 40 6.018669 CACAACCTTTTCTAGTGTTCTGAGAC 60.019 42.308 0.00 0.00 0.00 3.36
40 41 5.871396 ACCTTTTCTAGTGTTCTGAGACA 57.129 39.130 0.00 0.00 0.00 3.41
41 42 6.235231 ACCTTTTCTAGTGTTCTGAGACAA 57.765 37.500 0.00 0.00 0.00 3.18
42 43 6.284459 ACCTTTTCTAGTGTTCTGAGACAAG 58.716 40.000 0.00 0.00 30.28 3.16
43 44 6.098409 ACCTTTTCTAGTGTTCTGAGACAAGA 59.902 38.462 0.00 0.00 31.51 3.02
44 45 6.422400 CCTTTTCTAGTGTTCTGAGACAAGAC 59.578 42.308 0.00 0.00 31.51 3.01
45 46 6.716934 TTTCTAGTGTTCTGAGACAAGACT 57.283 37.500 0.00 0.00 32.46 3.24
46 47 5.950758 TCTAGTGTTCTGAGACAAGACTC 57.049 43.478 0.00 0.00 37.42 3.36
47 48 5.626142 TCTAGTGTTCTGAGACAAGACTCT 58.374 41.667 0.00 0.00 37.73 3.24
48 49 6.065374 TCTAGTGTTCTGAGACAAGACTCTT 58.935 40.000 0.00 0.00 37.73 2.85
49 50 7.225011 TCTAGTGTTCTGAGACAAGACTCTTA 58.775 38.462 0.00 0.00 37.73 2.10
50 51 6.909550 AGTGTTCTGAGACAAGACTCTTAT 57.090 37.500 0.00 0.00 37.73 1.73
51 52 7.296628 AGTGTTCTGAGACAAGACTCTTATT 57.703 36.000 0.00 0.00 37.73 1.40
52 53 8.410673 AGTGTTCTGAGACAAGACTCTTATTA 57.589 34.615 0.00 0.00 37.73 0.98
53 54 8.301002 AGTGTTCTGAGACAAGACTCTTATTAC 58.699 37.037 0.00 0.00 37.73 1.89
54 55 8.082852 GTGTTCTGAGACAAGACTCTTATTACA 58.917 37.037 0.00 0.00 37.73 2.41
55 56 8.638873 TGTTCTGAGACAAGACTCTTATTACAA 58.361 33.333 0.00 0.00 37.73 2.41
56 57 9.477484 GTTCTGAGACAAGACTCTTATTACAAA 57.523 33.333 0.00 0.00 37.73 2.83
60 61 9.832445 TGAGACAAGACTCTTATTACAAAAACT 57.168 29.630 0.00 0.00 37.73 2.66
62 63 9.614792 AGACAAGACTCTTATTACAAAAACTGT 57.385 29.630 0.00 0.00 42.47 3.55
75 76 8.514330 TTACAAAAACTGTTTAGGACACATCT 57.486 30.769 6.16 0.00 39.64 2.90
76 77 9.616156 TTACAAAAACTGTTTAGGACACATCTA 57.384 29.630 6.16 0.00 39.64 1.98
77 78 8.514330 ACAAAAACTGTTTAGGACACATCTAA 57.486 30.769 6.16 0.00 32.99 2.10
78 79 8.962679 ACAAAAACTGTTTAGGACACATCTAAA 58.037 29.630 6.16 0.00 32.99 1.85
79 80 9.965824 CAAAAACTGTTTAGGACACATCTAAAT 57.034 29.630 6.16 0.00 38.47 1.40
80 81 9.965824 AAAAACTGTTTAGGACACATCTAAATG 57.034 29.630 6.16 0.00 38.47 2.32
175 176 6.985188 TTTTCTGCGTTATTTATGAGAGCT 57.015 33.333 0.00 0.00 0.00 4.09
176 177 6.985188 TTTCTGCGTTATTTATGAGAGCTT 57.015 33.333 0.00 0.00 0.00 3.74
177 178 8.487313 TTTTCTGCGTTATTTATGAGAGCTTA 57.513 30.769 0.00 0.00 0.00 3.09
178 179 8.487313 TTTCTGCGTTATTTATGAGAGCTTAA 57.513 30.769 0.00 0.00 0.00 1.85
179 180 8.487313 TTCTGCGTTATTTATGAGAGCTTAAA 57.513 30.769 0.00 0.00 0.00 1.52
180 181 8.662781 TCTGCGTTATTTATGAGAGCTTAAAT 57.337 30.769 6.42 6.42 37.77 1.40
181 182 9.758651 TCTGCGTTATTTATGAGAGCTTAAATA 57.241 29.630 4.82 4.82 36.40 1.40
210 211 9.950680 ACATCTTAACAAAAACAACTAGATGTG 57.049 29.630 6.39 0.00 45.34 3.21
223 224 9.561069 AACAACTAGATGTGAATTAGACAAACT 57.439 29.630 6.39 1.44 32.81 2.66
224 225 8.993121 ACAACTAGATGTGAATTAGACAAACTG 58.007 33.333 4.64 0.00 30.82 3.16
225 226 8.993121 CAACTAGATGTGAATTAGACAAACTGT 58.007 33.333 0.00 0.00 0.00 3.55
226 227 9.561069 AACTAGATGTGAATTAGACAAACTGTT 57.439 29.630 0.00 0.00 0.00 3.16
227 228 8.993121 ACTAGATGTGAATTAGACAAACTGTTG 58.007 33.333 0.00 0.00 40.84 3.33
228 229 6.672147 AGATGTGAATTAGACAAACTGTTGC 58.328 36.000 0.00 0.00 38.39 4.17
229 230 5.826601 TGTGAATTAGACAAACTGTTGCA 57.173 34.783 0.00 0.00 38.39 4.08
230 231 6.201226 TGTGAATTAGACAAACTGTTGCAA 57.799 33.333 0.00 0.00 38.39 4.08
231 232 6.625362 TGTGAATTAGACAAACTGTTGCAAA 58.375 32.000 0.00 0.00 38.39 3.68
232 233 7.093354 TGTGAATTAGACAAACTGTTGCAAAA 58.907 30.769 0.00 0.00 38.39 2.44
233 234 7.600375 TGTGAATTAGACAAACTGTTGCAAAAA 59.400 29.630 0.00 0.00 38.39 1.94
234 235 8.603181 GTGAATTAGACAAACTGTTGCAAAAAT 58.397 29.630 0.00 0.00 38.39 1.82
235 236 8.816144 TGAATTAGACAAACTGTTGCAAAAATC 58.184 29.630 0.00 0.00 38.39 2.17
236 237 6.804534 TTAGACAAACTGTTGCAAAAATCG 57.195 33.333 0.00 0.00 38.39 3.34
237 238 3.551485 AGACAAACTGTTGCAAAAATCGC 59.449 39.130 0.00 0.00 38.39 4.58
238 239 3.257393 ACAAACTGTTGCAAAAATCGCA 58.743 36.364 0.00 0.00 38.39 5.10
239 240 3.681897 ACAAACTGTTGCAAAAATCGCAA 59.318 34.783 0.00 0.00 46.67 4.85
246 247 4.970472 TTGCAAAAATCGCAACATCTTC 57.030 36.364 0.00 0.00 44.13 2.87
247 248 3.974912 TGCAAAAATCGCAACATCTTCA 58.025 36.364 0.00 0.00 36.17 3.02
248 249 3.735240 TGCAAAAATCGCAACATCTTCAC 59.265 39.130 0.00 0.00 36.17 3.18
249 250 3.121778 GCAAAAATCGCAACATCTTCACC 59.878 43.478 0.00 0.00 0.00 4.02
250 251 2.900122 AAATCGCAACATCTTCACCG 57.100 45.000 0.00 0.00 0.00 4.94
251 252 0.447801 AATCGCAACATCTTCACCGC 59.552 50.000 0.00 0.00 0.00 5.68
252 253 0.673333 ATCGCAACATCTTCACCGCA 60.673 50.000 0.00 0.00 0.00 5.69
253 254 0.673333 TCGCAACATCTTCACCGCAT 60.673 50.000 0.00 0.00 0.00 4.73
254 255 1.006086 CGCAACATCTTCACCGCATA 58.994 50.000 0.00 0.00 0.00 3.14
255 256 1.599071 CGCAACATCTTCACCGCATAT 59.401 47.619 0.00 0.00 0.00 1.78
256 257 2.799978 CGCAACATCTTCACCGCATATA 59.200 45.455 0.00 0.00 0.00 0.86
257 258 3.247411 CGCAACATCTTCACCGCATATAA 59.753 43.478 0.00 0.00 0.00 0.98
258 259 4.083855 CGCAACATCTTCACCGCATATAAT 60.084 41.667 0.00 0.00 0.00 1.28
259 260 5.560760 CGCAACATCTTCACCGCATATAATT 60.561 40.000 0.00 0.00 0.00 1.40
260 261 6.208644 GCAACATCTTCACCGCATATAATTT 58.791 36.000 0.00 0.00 0.00 1.82
261 262 6.697019 GCAACATCTTCACCGCATATAATTTT 59.303 34.615 0.00 0.00 0.00 1.82
262 263 7.096477 GCAACATCTTCACCGCATATAATTTTC 60.096 37.037 0.00 0.00 0.00 2.29
263 264 7.807977 ACATCTTCACCGCATATAATTTTCT 57.192 32.000 0.00 0.00 0.00 2.52
264 265 7.642669 ACATCTTCACCGCATATAATTTTCTG 58.357 34.615 0.00 0.00 0.00 3.02
265 266 6.060028 TCTTCACCGCATATAATTTTCTGC 57.940 37.500 0.00 0.00 0.00 4.26
274 275 7.026568 GCATATAATTTTCTGCGTATGTTGC 57.973 36.000 0.00 0.00 0.00 4.17
275 276 6.636447 GCATATAATTTTCTGCGTATGTTGCA 59.364 34.615 0.00 0.00 40.70 4.08
276 277 7.167302 GCATATAATTTTCTGCGTATGTTGCAA 59.833 33.333 0.00 0.00 42.70 4.08
277 278 9.018716 CATATAATTTTCTGCGTATGTTGCAAA 57.981 29.630 0.00 0.00 42.70 3.68
278 279 7.881643 ATAATTTTCTGCGTATGTTGCAAAA 57.118 28.000 0.00 0.00 42.70 2.44
279 280 6.595772 AATTTTCTGCGTATGTTGCAAAAA 57.404 29.167 0.00 0.00 42.70 1.94
280 281 6.783892 ATTTTCTGCGTATGTTGCAAAAAT 57.216 29.167 0.00 0.30 42.70 1.82
281 282 6.595772 TTTTCTGCGTATGTTGCAAAAATT 57.404 29.167 0.00 0.00 42.70 1.82
282 283 5.573296 TTCTGCGTATGTTGCAAAAATTG 57.427 34.783 0.00 0.00 42.70 2.32
296 297 5.009048 CAAAAATTGCAACACATCTTCGG 57.991 39.130 0.00 0.00 0.00 4.30
297 298 2.352503 AATTGCAACACATCTTCGGC 57.647 45.000 0.00 0.00 0.00 5.54
298 299 0.527565 ATTGCAACACATCTTCGGCC 59.472 50.000 0.00 0.00 0.00 6.13
299 300 1.851021 TTGCAACACATCTTCGGCCG 61.851 55.000 22.12 22.12 0.00 6.13
300 301 2.480555 CAACACATCTTCGGCCGC 59.519 61.111 23.51 0.00 0.00 6.53
301 302 3.118454 AACACATCTTCGGCCGCG 61.118 61.111 23.51 14.50 0.00 6.46
320 321 3.964875 CACGCGCTTGGGCAAGTT 61.965 61.111 5.73 0.00 40.45 2.66
321 322 2.281208 ACGCGCTTGGGCAAGTTA 60.281 55.556 5.73 0.00 40.45 2.24
322 323 1.674322 ACGCGCTTGGGCAAGTTAT 60.674 52.632 5.73 0.00 40.45 1.89
323 324 1.062525 CGCGCTTGGGCAAGTTATC 59.937 57.895 5.56 0.00 40.45 1.75
324 325 1.369091 CGCGCTTGGGCAAGTTATCT 61.369 55.000 5.56 0.00 40.45 1.98
325 326 0.811281 GCGCTTGGGCAAGTTATCTT 59.189 50.000 0.00 0.00 40.45 2.40
335 336 1.737793 CAAGTTATCTTGGCGGTCACC 59.262 52.381 5.74 0.00 45.02 4.02
336 337 1.674817 AAGTTATCTTGGCGGTCACCG 60.675 52.381 13.48 13.48 40.23 4.94
337 338 4.249888 AAGTTATCTTGGCGGTCACCGT 62.250 50.000 19.71 0.00 39.79 4.83
338 339 5.683020 AAGTTATCTTGGCGGTCACCGTT 62.683 47.826 19.71 0.00 39.79 4.44
345 346 4.007940 CGGTCACCGTTGTTGCCG 62.008 66.667 8.54 0.00 42.73 5.69
346 347 2.589442 GGTCACCGTTGTTGCCGA 60.589 61.111 0.00 0.00 0.00 5.54
347 348 2.604174 GGTCACCGTTGTTGCCGAG 61.604 63.158 0.00 0.00 0.00 4.63
348 349 2.280524 TCACCGTTGTTGCCGAGG 60.281 61.111 0.00 0.00 0.00 4.63
349 350 3.353836 CACCGTTGTTGCCGAGGG 61.354 66.667 0.00 0.00 36.29 4.30
350 351 3.552384 ACCGTTGTTGCCGAGGGA 61.552 61.111 0.00 0.00 34.61 4.20
351 352 3.047877 CCGTTGTTGCCGAGGGAC 61.048 66.667 0.00 0.00 32.58 4.46
352 353 2.280524 CGTTGTTGCCGAGGGACA 60.281 61.111 0.00 0.00 0.00 4.02
353 354 2.317609 CGTTGTTGCCGAGGGACAG 61.318 63.158 0.00 0.00 0.00 3.51
354 355 1.070786 GTTGTTGCCGAGGGACAGA 59.929 57.895 0.00 0.00 0.00 3.41
355 356 0.951040 GTTGTTGCCGAGGGACAGAG 60.951 60.000 0.00 0.00 0.00 3.35
356 357 1.118965 TTGTTGCCGAGGGACAGAGA 61.119 55.000 0.00 0.00 0.00 3.10
357 358 1.079750 GTTGCCGAGGGACAGAGAC 60.080 63.158 0.00 0.00 0.00 3.36
358 359 1.533033 TTGCCGAGGGACAGAGACA 60.533 57.895 0.00 0.00 0.00 3.41
359 360 0.904865 TTGCCGAGGGACAGAGACAT 60.905 55.000 0.00 0.00 0.00 3.06
360 361 1.142748 GCCGAGGGACAGAGACATG 59.857 63.158 0.00 0.00 0.00 3.21
361 362 1.142748 CCGAGGGACAGAGACATGC 59.857 63.158 0.00 0.00 0.00 4.06
362 363 1.226802 CGAGGGACAGAGACATGCG 60.227 63.158 0.00 0.00 0.00 4.73
363 364 1.893786 GAGGGACAGAGACATGCGT 59.106 57.895 0.00 0.00 0.00 5.24
364 365 0.459237 GAGGGACAGAGACATGCGTG 60.459 60.000 3.82 3.82 0.00 5.34
365 366 1.448540 GGGACAGAGACATGCGTGG 60.449 63.158 11.36 0.00 0.00 4.94
366 367 1.293498 GGACAGAGACATGCGTGGT 59.707 57.895 11.36 0.00 0.00 4.16
367 368 0.320771 GGACAGAGACATGCGTGGTT 60.321 55.000 11.36 0.00 0.00 3.67
368 369 1.067142 GGACAGAGACATGCGTGGTTA 60.067 52.381 11.36 0.00 0.00 2.85
369 370 2.611971 GGACAGAGACATGCGTGGTTAA 60.612 50.000 11.36 0.00 0.00 2.01
370 371 2.668457 GACAGAGACATGCGTGGTTAAG 59.332 50.000 11.36 0.00 0.00 1.85
371 372 1.394917 CAGAGACATGCGTGGTTAAGC 59.605 52.381 11.36 0.00 0.00 3.09
372 373 1.001974 AGAGACATGCGTGGTTAAGCA 59.998 47.619 11.36 2.54 45.10 3.91
373 374 1.394917 GAGACATGCGTGGTTAAGCAG 59.605 52.381 7.79 3.86 44.27 4.24
374 375 0.447801 GACATGCGTGGTTAAGCAGG 59.552 55.000 20.07 20.07 46.07 4.85
375 376 1.137404 CATGCGTGGTTAAGCAGGC 59.863 57.895 33.78 33.78 44.27 4.85
376 377 2.046285 ATGCGTGGTTAAGCAGGCC 61.046 57.895 35.65 23.62 44.27 5.19
377 378 2.671619 GCGTGGTTAAGCAGGCCA 60.672 61.111 31.71 9.13 0.00 5.36
378 379 2.978018 GCGTGGTTAAGCAGGCCAC 61.978 63.158 31.71 18.40 46.61 5.01
379 380 3.681473 GTGGTTAAGCAGGCCACC 58.319 61.111 7.79 2.43 44.95 4.61
380 381 1.074951 GTGGTTAAGCAGGCCACCT 59.925 57.895 7.79 0.00 44.95 4.00
392 393 3.625897 CCACCTGTCCACGCCAGA 61.626 66.667 0.00 0.00 31.38 3.86
393 394 2.665000 CACCTGTCCACGCCAGAT 59.335 61.111 0.00 0.00 31.38 2.90
394 395 1.448540 CACCTGTCCACGCCAGATC 60.449 63.158 0.00 0.00 31.38 2.75
395 396 2.202797 CCTGTCCACGCCAGATCG 60.203 66.667 0.00 0.00 31.38 3.69
396 397 2.202797 CTGTCCACGCCAGATCGG 60.203 66.667 0.00 0.00 38.11 4.18
405 406 3.933722 CCAGATCGGCCGGCTGAT 61.934 66.667 43.71 43.71 44.02 2.90
410 411 3.828083 ATCGGCCGGCTGATCCCTA 62.828 63.158 39.41 19.29 37.48 3.53
411 412 3.314331 CGGCCGGCTGATCCCTAT 61.314 66.667 32.31 0.00 0.00 2.57
412 413 1.982395 CGGCCGGCTGATCCCTATA 60.982 63.158 32.31 0.00 0.00 1.31
413 414 1.901085 GGCCGGCTGATCCCTATAG 59.099 63.158 28.56 0.00 0.00 1.31
414 415 1.617947 GGCCGGCTGATCCCTATAGG 61.618 65.000 28.56 12.27 0.00 2.57
436 437 4.664062 GCCTTGGGCTTGAGCATA 57.336 55.556 5.24 0.00 46.69 3.14
437 438 3.122369 GCCTTGGGCTTGAGCATAT 57.878 52.632 5.24 0.00 46.69 1.78
438 439 1.406903 GCCTTGGGCTTGAGCATATT 58.593 50.000 5.24 0.00 46.69 1.28
439 440 1.758862 GCCTTGGGCTTGAGCATATTT 59.241 47.619 5.24 0.00 46.69 1.40
440 441 2.223900 GCCTTGGGCTTGAGCATATTTC 60.224 50.000 5.24 0.00 46.69 2.17
441 442 2.363359 CCTTGGGCTTGAGCATATTTCC 59.637 50.000 5.24 0.00 44.36 3.13
442 443 2.824689 TGGGCTTGAGCATATTTCCA 57.175 45.000 5.24 0.00 44.36 3.53
443 444 2.658285 TGGGCTTGAGCATATTTCCAG 58.342 47.619 5.24 0.00 44.36 3.86
444 445 1.339291 GGGCTTGAGCATATTTCCAGC 59.661 52.381 5.24 2.85 44.36 4.85
445 446 2.305009 GGCTTGAGCATATTTCCAGCT 58.695 47.619 5.24 0.00 44.36 4.24
454 455 6.847421 AGCATATTTCCAGCTCTTTCTTTT 57.153 33.333 0.00 0.00 32.05 2.27
455 456 7.237209 AGCATATTTCCAGCTCTTTCTTTTT 57.763 32.000 0.00 0.00 32.05 1.94
474 475 3.951775 TTTTTGCGGGATTAAGCACAT 57.048 38.095 0.00 0.00 43.69 3.21
475 476 3.951775 TTTTGCGGGATTAAGCACATT 57.048 38.095 0.00 0.00 43.69 2.71
476 477 5.392767 TTTTTGCGGGATTAAGCACATTA 57.607 34.783 0.00 0.00 43.69 1.90
477 478 5.590530 TTTTGCGGGATTAAGCACATTAT 57.409 34.783 0.00 0.00 43.69 1.28
478 479 4.566545 TTGCGGGATTAAGCACATTATG 57.433 40.909 0.00 0.00 43.69 1.90
479 480 3.550820 TGCGGGATTAAGCACATTATGT 58.449 40.909 0.00 0.00 38.59 2.29
480 481 4.709250 TGCGGGATTAAGCACATTATGTA 58.291 39.130 0.00 0.00 38.59 2.29
481 482 5.126779 TGCGGGATTAAGCACATTATGTAA 58.873 37.500 0.00 0.00 38.59 2.41
482 483 5.590663 TGCGGGATTAAGCACATTATGTAAA 59.409 36.000 0.00 0.00 38.59 2.01
483 484 6.095580 TGCGGGATTAAGCACATTATGTAAAA 59.904 34.615 0.00 0.00 38.59 1.52
484 485 6.636850 GCGGGATTAAGCACATTATGTAAAAG 59.363 38.462 0.00 0.00 0.00 2.27
485 486 7.681065 GCGGGATTAAGCACATTATGTAAAAGT 60.681 37.037 0.00 0.00 0.00 2.66
486 487 7.643764 CGGGATTAAGCACATTATGTAAAAGTG 59.356 37.037 0.00 0.00 0.00 3.16
487 488 7.435192 GGGATTAAGCACATTATGTAAAAGTGC 59.565 37.037 18.20 18.20 44.48 4.40
488 489 7.973388 GGATTAAGCACATTATGTAAAAGTGCA 59.027 33.333 23.41 11.93 45.51 4.57
489 490 9.520204 GATTAAGCACATTATGTAAAAGTGCAT 57.480 29.630 23.41 18.12 45.51 3.96
490 491 8.686397 TTAAGCACATTATGTAAAAGTGCATG 57.314 30.769 23.41 0.00 45.51 4.06
491 492 5.104374 AGCACATTATGTAAAAGTGCATGC 58.896 37.500 23.41 11.82 45.51 4.06
492 493 5.104374 GCACATTATGTAAAAGTGCATGCT 58.896 37.500 20.33 0.00 44.02 3.79
493 494 5.230726 GCACATTATGTAAAAGTGCATGCTC 59.769 40.000 20.33 15.94 44.02 4.26
494 495 6.558009 CACATTATGTAAAAGTGCATGCTCT 58.442 36.000 20.33 18.23 31.82 4.09
495 496 7.679400 GCACATTATGTAAAAGTGCATGCTCTA 60.679 37.037 21.70 7.14 44.02 2.43
496 497 8.183536 CACATTATGTAAAAGTGCATGCTCTAA 58.816 33.333 21.70 11.26 31.82 2.10
497 498 8.184192 ACATTATGTAAAAGTGCATGCTCTAAC 58.816 33.333 21.70 18.70 31.82 2.34
498 499 5.567138 ATGTAAAAGTGCATGCTCTAACC 57.433 39.130 21.70 11.06 0.00 2.85
499 500 4.393834 TGTAAAAGTGCATGCTCTAACCA 58.606 39.130 21.70 13.20 0.00 3.67
500 501 4.824537 TGTAAAAGTGCATGCTCTAACCAA 59.175 37.500 21.70 6.51 0.00 3.67
501 502 5.476599 TGTAAAAGTGCATGCTCTAACCAAT 59.523 36.000 21.70 3.24 0.00 3.16
502 503 4.445452 AAAGTGCATGCTCTAACCAATG 57.555 40.909 21.70 0.00 0.00 2.82
503 504 1.747355 AGTGCATGCTCTAACCAATGC 59.253 47.619 20.22 0.00 35.77 3.56
504 505 1.473677 GTGCATGCTCTAACCAATGCA 59.526 47.619 20.33 5.13 41.91 3.96
505 506 2.094597 GTGCATGCTCTAACCAATGCAA 60.095 45.455 20.33 0.00 44.98 4.08
506 507 2.761767 TGCATGCTCTAACCAATGCAAT 59.238 40.909 20.33 0.00 41.32 3.56
507 508 3.181484 TGCATGCTCTAACCAATGCAATC 60.181 43.478 20.33 0.00 41.32 2.67
508 509 3.181484 GCATGCTCTAACCAATGCAATCA 60.181 43.478 11.37 0.00 38.96 2.57
509 510 4.678574 GCATGCTCTAACCAATGCAATCAA 60.679 41.667 11.37 0.00 38.96 2.57
510 511 5.412640 CATGCTCTAACCAATGCAATCAAA 58.587 37.500 0.00 0.00 38.96 2.69
511 512 5.465532 TGCTCTAACCAATGCAATCAAAA 57.534 34.783 0.00 0.00 32.12 2.44
512 513 5.472148 TGCTCTAACCAATGCAATCAAAAG 58.528 37.500 0.00 0.00 32.12 2.27
513 514 5.243507 TGCTCTAACCAATGCAATCAAAAGA 59.756 36.000 0.00 0.00 32.12 2.52
514 515 6.071221 TGCTCTAACCAATGCAATCAAAAGAT 60.071 34.615 0.00 0.00 32.12 2.40
515 516 6.474751 GCTCTAACCAATGCAATCAAAAGATC 59.525 38.462 0.00 0.00 0.00 2.75
516 517 6.554419 TCTAACCAATGCAATCAAAAGATCG 58.446 36.000 0.00 0.00 0.00 3.69
517 518 5.389859 AACCAATGCAATCAAAAGATCGA 57.610 34.783 0.00 0.00 0.00 3.59
518 519 5.587388 ACCAATGCAATCAAAAGATCGAT 57.413 34.783 0.00 0.00 0.00 3.59
519 520 5.969423 ACCAATGCAATCAAAAGATCGATT 58.031 33.333 0.00 0.00 32.04 3.34
520 521 6.400568 ACCAATGCAATCAAAAGATCGATTT 58.599 32.000 0.00 0.00 29.38 2.17
521 522 6.311935 ACCAATGCAATCAAAAGATCGATTTG 59.688 34.615 16.41 16.41 38.76 2.32
532 533 9.398170 TCAAAAGATCGATTTGATGAAAAAGAC 57.602 29.630 19.46 0.00 40.75 3.01
533 534 9.403110 CAAAAGATCGATTTGATGAAAAAGACT 57.597 29.630 17.19 0.00 39.56 3.24
536 537 9.658799 AAGATCGATTTGATGAAAAAGACTAGA 57.341 29.630 0.00 0.00 37.47 2.43
537 538 9.092876 AGATCGATTTGATGAAAAAGACTAGAC 57.907 33.333 0.00 0.00 37.47 2.59
538 539 8.777865 ATCGATTTGATGAAAAAGACTAGACA 57.222 30.769 0.00 0.00 35.45 3.41
539 540 8.601845 TCGATTTGATGAAAAAGACTAGACAA 57.398 30.769 0.00 0.00 0.00 3.18
540 541 8.495949 TCGATTTGATGAAAAAGACTAGACAAC 58.504 33.333 0.00 0.00 0.00 3.32
541 542 8.282592 CGATTTGATGAAAAAGACTAGACAACA 58.717 33.333 0.00 0.00 0.00 3.33
542 543 9.387123 GATTTGATGAAAAAGACTAGACAACAC 57.613 33.333 0.00 0.00 0.00 3.32
543 544 7.857734 TTGATGAAAAAGACTAGACAACACA 57.142 32.000 0.00 0.00 0.00 3.72
544 545 8.450578 TTGATGAAAAAGACTAGACAACACAT 57.549 30.769 0.00 0.00 0.00 3.21
545 546 8.450578 TGATGAAAAAGACTAGACAACACATT 57.549 30.769 0.00 0.00 0.00 2.71
546 547 9.554395 TGATGAAAAAGACTAGACAACACATTA 57.446 29.630 0.00 0.00 0.00 1.90
550 551 9.953825 GAAAAAGACTAGACAACACATTATACG 57.046 33.333 0.00 0.00 0.00 3.06
551 552 9.485206 AAAAAGACTAGACAACACATTATACGT 57.515 29.630 0.00 0.00 0.00 3.57
552 553 8.684973 AAAGACTAGACAACACATTATACGTC 57.315 34.615 0.00 0.00 0.00 4.34
553 554 6.484540 AGACTAGACAACACATTATACGTCG 58.515 40.000 0.00 0.00 0.00 5.12
554 555 6.314648 AGACTAGACAACACATTATACGTCGA 59.685 38.462 0.00 0.00 0.00 4.20
555 556 6.253746 ACTAGACAACACATTATACGTCGAC 58.746 40.000 5.18 5.18 0.00 4.20
556 557 5.050644 AGACAACACATTATACGTCGACA 57.949 39.130 17.16 0.00 0.00 4.35
557 558 4.855388 AGACAACACATTATACGTCGACAC 59.145 41.667 17.16 0.00 0.00 3.67
558 559 4.548494 ACAACACATTATACGTCGACACA 58.452 39.130 17.16 2.05 0.00 3.72
559 560 5.165676 ACAACACATTATACGTCGACACAT 58.834 37.500 17.16 10.06 0.00 3.21
560 561 5.636121 ACAACACATTATACGTCGACACATT 59.364 36.000 17.16 0.00 0.00 2.71
561 562 5.944049 ACACATTATACGTCGACACATTC 57.056 39.130 17.16 0.00 0.00 2.67
562 563 5.647589 ACACATTATACGTCGACACATTCT 58.352 37.500 17.16 0.00 0.00 2.40
563 564 6.788243 ACACATTATACGTCGACACATTCTA 58.212 36.000 17.16 0.00 0.00 2.10
564 565 7.252708 ACACATTATACGTCGACACATTCTAA 58.747 34.615 17.16 4.67 0.00 2.10
591 592 0.736053 CTAGTCTGACTGCGAGTCCC 59.264 60.000 20.19 3.18 44.44 4.46
602 603 1.843734 GCGAGTCCCCGAGATACGAG 61.844 65.000 0.00 0.00 45.77 4.18
603 604 0.532417 CGAGTCCCCGAGATACGAGT 60.532 60.000 0.00 0.00 45.77 4.18
604 605 1.269988 CGAGTCCCCGAGATACGAGTA 60.270 57.143 0.00 0.00 45.77 2.59
606 607 3.367806 CGAGTCCCCGAGATACGAGTATA 60.368 52.174 0.00 0.00 45.77 1.47
607 608 3.932089 GAGTCCCCGAGATACGAGTATAC 59.068 52.174 0.00 0.00 45.77 1.47
608 609 2.670414 GTCCCCGAGATACGAGTATACG 59.330 54.545 0.00 12.08 45.77 3.06
609 610 2.562738 TCCCCGAGATACGAGTATACGA 59.437 50.000 17.22 2.97 45.77 3.43
610 611 2.670414 CCCCGAGATACGAGTATACGAC 59.330 54.545 17.22 0.00 45.77 4.34
611 612 2.670414 CCCGAGATACGAGTATACGACC 59.330 54.545 17.22 0.00 45.77 4.79
612 613 2.343843 CCGAGATACGAGTATACGACCG 59.656 54.545 17.22 11.77 45.77 4.79
613 614 2.222464 CGAGATACGAGTATACGACCGC 60.222 54.545 12.80 1.45 45.77 5.68
709 738 2.024871 CGACCCGACGAGAGCATC 59.975 66.667 0.00 0.00 35.09 3.91
759 793 0.179086 CCACCAAGCAACCAACCAAC 60.179 55.000 0.00 0.00 0.00 3.77
817 851 0.386100 CTACTCCATCCATCGCGTCG 60.386 60.000 5.77 0.00 0.00 5.12
818 852 2.402282 TACTCCATCCATCGCGTCGC 62.402 60.000 7.29 7.29 0.00 5.19
846 880 3.834799 GGCCCGGGACTACAGTCG 61.835 72.222 29.31 0.00 45.65 4.18
889 923 2.420466 CTTTGACCTTTGCCCCGTGC 62.420 60.000 0.00 0.00 41.77 5.34
892 926 4.660938 ACCTTTGCCCCGTGCTCC 62.661 66.667 0.00 0.00 42.00 4.70
899 933 4.489771 CCCCGTGCTCCCACCATC 62.490 72.222 0.00 0.00 38.79 3.51
900 934 4.838152 CCCGTGCTCCCACCATCG 62.838 72.222 0.00 0.00 38.79 3.84
908 943 3.807839 CCCACCATCGCCCATCCA 61.808 66.667 0.00 0.00 0.00 3.41
909 944 2.517414 CCACCATCGCCCATCCAT 59.483 61.111 0.00 0.00 0.00 3.41
1015 1057 1.903877 CTTCATGTCCAGGGAGCGGT 61.904 60.000 0.00 0.00 0.00 5.68
1434 1476 1.135333 GTCTACCTGGTGAGTAGCTGC 59.865 57.143 10.23 0.00 37.67 5.25
1449 1491 1.442857 CTGCAGAGACCACGACGAC 60.443 63.158 8.42 0.00 0.00 4.34
1636 1679 1.063806 CCTTCTTCAGCGTCAAGTCG 58.936 55.000 0.00 0.00 0.00 4.18
1690 1733 0.174617 CGCACCTCTCCTTTCCTCTC 59.825 60.000 0.00 0.00 0.00 3.20
1691 1734 0.539518 GCACCTCTCCTTTCCTCTCC 59.460 60.000 0.00 0.00 0.00 3.71
1692 1735 1.944177 CACCTCTCCTTTCCTCTCCA 58.056 55.000 0.00 0.00 0.00 3.86
1693 1736 2.476199 CACCTCTCCTTTCCTCTCCAT 58.524 52.381 0.00 0.00 0.00 3.41
1694 1737 2.170187 CACCTCTCCTTTCCTCTCCATG 59.830 54.545 0.00 0.00 0.00 3.66
1695 1738 2.045047 ACCTCTCCTTTCCTCTCCATGA 59.955 50.000 0.00 0.00 0.00 3.07
1696 1739 2.433970 CCTCTCCTTTCCTCTCCATGAC 59.566 54.545 0.00 0.00 0.00 3.06
1697 1740 3.373830 CTCTCCTTTCCTCTCCATGACT 58.626 50.000 0.00 0.00 0.00 3.41
1751 1794 2.026014 GCAACAGCCCAACACACG 59.974 61.111 0.00 0.00 0.00 4.49
1774 1817 1.133790 GCACTGACAATGGCATCCTTC 59.866 52.381 0.00 0.00 0.00 3.46
1779 1822 0.259938 ACAATGGCATCCTTCCTCCC 59.740 55.000 0.00 0.00 0.00 4.30
2114 2157 2.711924 GCCGGACGAGTACTACCG 59.288 66.667 21.14 21.14 44.16 4.02
2265 2308 6.554334 ACACATACACTGGTTGATTTGTAC 57.446 37.500 0.00 0.00 0.00 2.90
2302 2356 7.543868 CGGGTTCTCTGATCTTTATGCTAATAG 59.456 40.741 0.00 0.00 0.00 1.73
2346 2400 4.226427 AGAGATGCAAGGCAGTTTCATA 57.774 40.909 0.00 0.00 43.65 2.15
2347 2401 3.944015 AGAGATGCAAGGCAGTTTCATAC 59.056 43.478 0.00 0.00 43.65 2.39
2365 2419 0.322546 ACGCTTTTTAGCTGAGGGGG 60.323 55.000 0.00 0.00 0.00 5.40
2430 2512 2.969628 ACTGTACTGCATGGAGCTAC 57.030 50.000 14.95 15.11 45.94 3.58
2439 2521 4.163078 ACTGCATGGAGCTACTTATCTGTT 59.837 41.667 14.95 0.00 45.94 3.16
2440 2522 5.363868 ACTGCATGGAGCTACTTATCTGTTA 59.636 40.000 14.95 0.00 45.94 2.41
2441 2523 6.127054 ACTGCATGGAGCTACTTATCTGTTAA 60.127 38.462 14.95 0.00 45.94 2.01
2442 2524 6.283694 TGCATGGAGCTACTTATCTGTTAAG 58.716 40.000 0.00 4.38 45.94 1.85
2505 2587 1.679153 ACCACAATTCGGTCACCAAAC 59.321 47.619 0.00 0.00 27.30 2.93
2566 2648 5.006165 GTGTCAGCTACTTATCATGCAAGTC 59.994 44.000 13.75 4.09 37.42 3.01
2589 2671 4.592179 GAACTTGTGTGAGCAAACTTCTC 58.408 43.478 0.00 0.00 0.00 2.87
2593 2675 5.698545 ACTTGTGTGAGCAAACTTCTCTATC 59.301 40.000 0.00 0.00 0.00 2.08
2603 2685 4.358494 AACTTCTCTATCGAGACAACCG 57.642 45.455 0.00 0.00 45.61 4.44
2616 2698 5.860182 TCGAGACAACCGAAACTAAATACTG 59.140 40.000 0.00 0.00 32.64 2.74
2618 2700 5.548406 AGACAACCGAAACTAAATACTGCT 58.452 37.500 0.00 0.00 0.00 4.24
2619 2701 5.638234 AGACAACCGAAACTAAATACTGCTC 59.362 40.000 0.00 0.00 0.00 4.26
2620 2702 4.694037 ACAACCGAAACTAAATACTGCTCC 59.306 41.667 0.00 0.00 0.00 4.70
2621 2703 3.870274 ACCGAAACTAAATACTGCTCCC 58.130 45.455 0.00 0.00 0.00 4.30
2622 2704 3.518303 ACCGAAACTAAATACTGCTCCCT 59.482 43.478 0.00 0.00 0.00 4.20
2623 2705 4.120589 CCGAAACTAAATACTGCTCCCTC 58.879 47.826 0.00 0.00 0.00 4.30
2624 2706 4.120589 CGAAACTAAATACTGCTCCCTCC 58.879 47.826 0.00 0.00 0.00 4.30
2625 2707 3.821421 AACTAAATACTGCTCCCTCCG 57.179 47.619 0.00 0.00 0.00 4.63
2626 2708 2.748388 ACTAAATACTGCTCCCTCCGT 58.252 47.619 0.00 0.00 0.00 4.69
2627 2709 2.694109 ACTAAATACTGCTCCCTCCGTC 59.306 50.000 0.00 0.00 0.00 4.79
2628 2710 0.831307 AAATACTGCTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
2629 2711 1.049289 AATACTGCTCCCTCCGTCCC 61.049 60.000 0.00 0.00 0.00 4.46
2630 2712 2.238319 ATACTGCTCCCTCCGTCCCA 62.238 60.000 0.00 0.00 0.00 4.37
2631 2713 2.449967 TACTGCTCCCTCCGTCCCAA 62.450 60.000 0.00 0.00 0.00 4.12
2632 2714 2.528127 TGCTCCCTCCGTCCCAAA 60.528 61.111 0.00 0.00 0.00 3.28
2633 2715 2.124507 CTGCTCCCTCCGTCCCAAAA 62.125 60.000 0.00 0.00 0.00 2.44
2634 2716 1.303282 GCTCCCTCCGTCCCAAAAT 59.697 57.895 0.00 0.00 0.00 1.82
2635 2717 1.032114 GCTCCCTCCGTCCCAAAATG 61.032 60.000 0.00 0.00 0.00 2.32
2636 2718 0.328258 CTCCCTCCGTCCCAAAATGT 59.672 55.000 0.00 0.00 0.00 2.71
2637 2719 1.557832 CTCCCTCCGTCCCAAAATGTA 59.442 52.381 0.00 0.00 0.00 2.29
2638 2720 1.986631 TCCCTCCGTCCCAAAATGTAA 59.013 47.619 0.00 0.00 0.00 2.41
2639 2721 2.026636 TCCCTCCGTCCCAAAATGTAAG 60.027 50.000 0.00 0.00 0.00 2.34
2640 2722 2.026636 CCCTCCGTCCCAAAATGTAAGA 60.027 50.000 0.00 0.00 0.00 2.10
2641 2723 3.007635 CCTCCGTCCCAAAATGTAAGAC 58.992 50.000 0.00 0.00 0.00 3.01
2642 2724 3.558321 CCTCCGTCCCAAAATGTAAGACA 60.558 47.826 0.00 0.00 0.00 3.41
2643 2725 4.261801 CTCCGTCCCAAAATGTAAGACAT 58.738 43.478 0.00 0.00 41.31 3.06
2685 2767 4.673534 AAAACGTCATACATTTCGGGAC 57.326 40.909 0.00 0.00 0.00 4.46
2686 2768 3.322211 AACGTCATACATTTCGGGACA 57.678 42.857 0.00 0.00 0.00 4.02
2687 2769 2.888594 ACGTCATACATTTCGGGACAG 58.111 47.619 0.00 0.00 0.00 3.51
2688 2770 2.494471 ACGTCATACATTTCGGGACAGA 59.506 45.455 0.00 0.00 0.00 3.41
2689 2771 3.116300 CGTCATACATTTCGGGACAGAG 58.884 50.000 0.00 0.00 0.00 3.35
2690 2772 3.458189 GTCATACATTTCGGGACAGAGG 58.542 50.000 0.00 0.00 0.00 3.69
2691 2773 2.434336 TCATACATTTCGGGACAGAGGG 59.566 50.000 0.00 0.00 0.00 4.30
2692 2774 2.241281 TACATTTCGGGACAGAGGGA 57.759 50.000 0.00 0.00 0.00 4.20
2693 2775 0.905357 ACATTTCGGGACAGAGGGAG 59.095 55.000 0.00 0.00 0.00 4.30
2694 2776 0.905357 CATTTCGGGACAGAGGGAGT 59.095 55.000 0.00 0.00 0.00 3.85
2695 2777 2.108168 CATTTCGGGACAGAGGGAGTA 58.892 52.381 0.00 0.00 0.00 2.59
2696 2778 1.553706 TTTCGGGACAGAGGGAGTAC 58.446 55.000 0.00 0.00 0.00 2.73
2697 2779 0.702902 TTCGGGACAGAGGGAGTACT 59.297 55.000 0.00 0.00 0.00 2.73
2698 2780 0.702902 TCGGGACAGAGGGAGTACTT 59.297 55.000 0.00 0.00 0.00 2.24
2713 2795 7.133483 AGGGAGTACTTTACTATCCAATGACT 58.867 38.462 0.00 0.00 39.59 3.41
2725 2807 1.741706 CCAATGACTGGTGATGCACTC 59.258 52.381 0.00 0.00 40.78 3.51
2785 2895 8.807581 GCCAAAATCGTTTTCCTATTCTAAATG 58.192 33.333 0.00 0.00 0.00 2.32
2794 2904 8.915654 GTTTTCCTATTCTAAATGTGCAACTTG 58.084 33.333 0.00 0.00 38.04 3.16
2805 2915 2.729467 TGTGCAACTTGAACGTTTTCGG 60.729 45.455 0.46 0.00 42.89 4.30
2830 2940 6.369005 CAGAGTTTTCTGTAGCAATGAACAG 58.631 40.000 9.13 9.13 44.74 3.16
2832 2942 5.133221 AGTTTTCTGTAGCAATGAACAGGT 58.867 37.500 13.67 0.00 42.72 4.00
2833 2943 5.594317 AGTTTTCTGTAGCAATGAACAGGTT 59.406 36.000 13.67 0.00 42.72 3.50
2834 2944 6.096846 AGTTTTCTGTAGCAATGAACAGGTTT 59.903 34.615 13.67 0.00 42.72 3.27
2835 2945 6.463995 TTTCTGTAGCAATGAACAGGTTTT 57.536 33.333 13.67 0.00 42.72 2.43
2882 2994 4.021104 TGGAAAGAGACATCCAGTGTACAG 60.021 45.833 0.00 0.00 42.36 2.74
2937 3049 6.817140 ACTTCGATTCCAGAAATTACACCTAC 59.183 38.462 0.00 0.00 0.00 3.18
3018 3130 6.252015 CACATGACAAGAACAAAGAACACTTG 59.748 38.462 0.00 0.00 42.11 3.16
3186 3299 6.589523 CCTGCACGGAAATTTGATAATTGAAA 59.410 34.615 0.00 0.00 34.27 2.69
3211 3324 9.909644 AATGAGCATTATGAAAAATAGATCTGC 57.090 29.630 5.18 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.632538 ACACTAGAAAAGGTTGTGCAAC 57.367 40.909 6.52 6.52 40.45 4.17
11 12 4.947388 AGAACACTAGAAAAGGTTGTGCAA 59.053 37.500 0.00 0.00 32.49 4.08
12 13 4.335315 CAGAACACTAGAAAAGGTTGTGCA 59.665 41.667 0.00 0.00 29.50 4.57
13 14 4.574828 TCAGAACACTAGAAAAGGTTGTGC 59.425 41.667 0.00 0.00 33.50 4.57
14 15 6.018669 GTCTCAGAACACTAGAAAAGGTTGTG 60.019 42.308 0.00 2.31 34.14 3.33
15 16 6.049790 GTCTCAGAACACTAGAAAAGGTTGT 58.950 40.000 0.00 0.00 0.00 3.32
16 17 6.049149 TGTCTCAGAACACTAGAAAAGGTTG 58.951 40.000 0.00 0.00 0.00 3.77
17 18 6.235231 TGTCTCAGAACACTAGAAAAGGTT 57.765 37.500 0.00 0.00 0.00 3.50
18 19 5.871396 TGTCTCAGAACACTAGAAAAGGT 57.129 39.130 0.00 0.00 0.00 3.50
19 20 6.422400 GTCTTGTCTCAGAACACTAGAAAAGG 59.578 42.308 0.00 0.00 35.93 3.11
20 21 7.206687 AGTCTTGTCTCAGAACACTAGAAAAG 58.793 38.462 0.00 0.00 36.37 2.27
21 22 7.068839 AGAGTCTTGTCTCAGAACACTAGAAAA 59.931 37.037 0.00 0.00 36.97 2.29
22 23 6.547880 AGAGTCTTGTCTCAGAACACTAGAAA 59.452 38.462 0.00 0.00 36.97 2.52
23 24 6.065374 AGAGTCTTGTCTCAGAACACTAGAA 58.935 40.000 0.00 0.00 36.97 2.10
24 25 5.626142 AGAGTCTTGTCTCAGAACACTAGA 58.374 41.667 0.00 0.00 36.97 2.43
25 26 5.957842 AGAGTCTTGTCTCAGAACACTAG 57.042 43.478 0.00 0.00 36.97 2.57
26 27 8.410673 AATAAGAGTCTTGTCTCAGAACACTA 57.589 34.615 15.90 0.00 36.97 2.74
27 28 6.909550 ATAAGAGTCTTGTCTCAGAACACT 57.090 37.500 15.90 0.00 36.97 3.55
28 29 8.082852 TGTAATAAGAGTCTTGTCTCAGAACAC 58.917 37.037 15.90 0.00 36.97 3.32
29 30 8.178313 TGTAATAAGAGTCTTGTCTCAGAACA 57.822 34.615 15.90 5.78 36.97 3.18
30 31 9.477484 TTTGTAATAAGAGTCTTGTCTCAGAAC 57.523 33.333 15.90 3.50 36.97 3.01
34 35 9.832445 AGTTTTTGTAATAAGAGTCTTGTCTCA 57.168 29.630 15.90 8.73 36.97 3.27
36 37 9.614792 ACAGTTTTTGTAATAAGAGTCTTGTCT 57.385 29.630 15.90 2.38 38.56 3.41
49 50 9.131791 AGATGTGTCCTAAACAGTTTTTGTAAT 57.868 29.630 3.25 0.00 39.73 1.89
50 51 8.514330 AGATGTGTCCTAAACAGTTTTTGTAA 57.486 30.769 3.25 0.00 39.73 2.41
51 52 9.616156 TTAGATGTGTCCTAAACAGTTTTTGTA 57.384 29.630 3.25 0.00 39.73 2.41
52 53 8.514330 TTAGATGTGTCCTAAACAGTTTTTGT 57.486 30.769 3.25 0.00 43.45 2.83
53 54 9.965824 ATTTAGATGTGTCCTAAACAGTTTTTG 57.034 29.630 3.25 0.00 38.97 2.44
54 55 9.965824 CATTTAGATGTGTCCTAAACAGTTTTT 57.034 29.630 3.25 0.00 38.97 1.94
55 56 9.131791 ACATTTAGATGTGTCCTAAACAGTTTT 57.868 29.630 3.25 0.00 44.64 2.43
56 57 8.691661 ACATTTAGATGTGTCCTAAACAGTTT 57.308 30.769 3.49 3.49 44.64 2.66
151 152 7.377766 AGCTCTCATAAATAACGCAGAAAAA 57.622 32.000 0.00 0.00 0.00 1.94
152 153 6.985188 AGCTCTCATAAATAACGCAGAAAA 57.015 33.333 0.00 0.00 0.00 2.29
153 154 6.985188 AAGCTCTCATAAATAACGCAGAAA 57.015 33.333 0.00 0.00 0.00 2.52
154 155 8.487313 TTTAAGCTCTCATAAATAACGCAGAA 57.513 30.769 0.00 0.00 0.00 3.02
155 156 8.662781 ATTTAAGCTCTCATAAATAACGCAGA 57.337 30.769 0.25 0.00 31.67 4.26
197 198 9.561069 AGTTTGTCTAATTCACATCTAGTTGTT 57.439 29.630 3.61 0.00 0.00 2.83
198 199 8.993121 CAGTTTGTCTAATTCACATCTAGTTGT 58.007 33.333 0.36 0.36 0.00 3.32
199 200 8.993121 ACAGTTTGTCTAATTCACATCTAGTTG 58.007 33.333 0.00 0.00 0.00 3.16
200 201 9.561069 AACAGTTTGTCTAATTCACATCTAGTT 57.439 29.630 0.00 0.00 0.00 2.24
201 202 8.993121 CAACAGTTTGTCTAATTCACATCTAGT 58.007 33.333 0.00 0.00 0.00 2.57
202 203 7.959651 GCAACAGTTTGTCTAATTCACATCTAG 59.040 37.037 0.00 0.00 34.90 2.43
203 204 7.443879 TGCAACAGTTTGTCTAATTCACATCTA 59.556 33.333 0.00 0.00 34.90 1.98
204 205 6.262944 TGCAACAGTTTGTCTAATTCACATCT 59.737 34.615 0.00 0.00 34.90 2.90
205 206 6.437928 TGCAACAGTTTGTCTAATTCACATC 58.562 36.000 0.00 0.00 34.90 3.06
206 207 6.389830 TGCAACAGTTTGTCTAATTCACAT 57.610 33.333 0.00 0.00 34.90 3.21
207 208 5.826601 TGCAACAGTTTGTCTAATTCACA 57.173 34.783 0.00 0.00 34.90 3.58
208 209 7.518731 TTTTGCAACAGTTTGTCTAATTCAC 57.481 32.000 0.00 0.00 34.90 3.18
209 210 8.715191 ATTTTTGCAACAGTTTGTCTAATTCA 57.285 26.923 0.00 0.00 34.90 2.57
210 211 7.998212 CGATTTTTGCAACAGTTTGTCTAATTC 59.002 33.333 0.00 0.00 34.90 2.17
211 212 7.516627 GCGATTTTTGCAACAGTTTGTCTAATT 60.517 33.333 0.00 0.00 34.90 1.40
212 213 6.074356 GCGATTTTTGCAACAGTTTGTCTAAT 60.074 34.615 0.00 0.00 34.90 1.73
213 214 5.231147 GCGATTTTTGCAACAGTTTGTCTAA 59.769 36.000 0.00 0.00 34.90 2.10
214 215 4.737765 GCGATTTTTGCAACAGTTTGTCTA 59.262 37.500 0.00 0.00 34.90 2.59
215 216 3.551485 GCGATTTTTGCAACAGTTTGTCT 59.449 39.130 0.00 0.00 34.90 3.41
216 217 3.305629 TGCGATTTTTGCAACAGTTTGTC 59.694 39.130 0.00 0.00 39.87 3.18
217 218 3.257393 TGCGATTTTTGCAACAGTTTGT 58.743 36.364 0.00 0.00 39.87 2.83
218 219 3.921969 TGCGATTTTTGCAACAGTTTG 57.078 38.095 0.00 0.00 39.87 2.93
226 227 3.735240 GTGAAGATGTTGCGATTTTTGCA 59.265 39.130 0.00 0.00 41.38 4.08
227 228 3.121778 GGTGAAGATGTTGCGATTTTTGC 59.878 43.478 0.00 0.00 0.00 3.68
228 229 3.361644 CGGTGAAGATGTTGCGATTTTTG 59.638 43.478 0.00 0.00 0.00 2.44
229 230 3.564511 CGGTGAAGATGTTGCGATTTTT 58.435 40.909 0.00 0.00 0.00 1.94
230 231 2.668279 GCGGTGAAGATGTTGCGATTTT 60.668 45.455 0.00 0.00 0.00 1.82
231 232 1.135689 GCGGTGAAGATGTTGCGATTT 60.136 47.619 0.00 0.00 0.00 2.17
232 233 0.447801 GCGGTGAAGATGTTGCGATT 59.552 50.000 0.00 0.00 0.00 3.34
233 234 0.673333 TGCGGTGAAGATGTTGCGAT 60.673 50.000 0.00 0.00 0.00 4.58
234 235 0.673333 ATGCGGTGAAGATGTTGCGA 60.673 50.000 0.00 0.00 0.00 5.10
235 236 1.006086 TATGCGGTGAAGATGTTGCG 58.994 50.000 0.00 0.00 0.00 4.85
236 237 4.811555 TTATATGCGGTGAAGATGTTGC 57.188 40.909 0.00 0.00 0.00 4.17
237 238 8.131100 AGAAAATTATATGCGGTGAAGATGTTG 58.869 33.333 0.00 0.00 0.00 3.33
238 239 8.131100 CAGAAAATTATATGCGGTGAAGATGTT 58.869 33.333 0.00 0.00 0.00 2.71
239 240 7.642669 CAGAAAATTATATGCGGTGAAGATGT 58.357 34.615 0.00 0.00 0.00 3.06
240 241 6.580041 GCAGAAAATTATATGCGGTGAAGATG 59.420 38.462 0.00 0.00 0.00 2.90
241 242 6.672147 GCAGAAAATTATATGCGGTGAAGAT 58.328 36.000 0.00 0.00 0.00 2.40
242 243 6.060028 GCAGAAAATTATATGCGGTGAAGA 57.940 37.500 0.00 0.00 0.00 2.87
250 251 6.636447 TGCAACATACGCAGAAAATTATATGC 59.364 34.615 0.00 0.00 33.55 3.14
251 252 8.559222 TTGCAACATACGCAGAAAATTATATG 57.441 30.769 0.00 0.00 41.18 1.78
252 253 9.579768 TTTTGCAACATACGCAGAAAATTATAT 57.420 25.926 0.00 0.00 41.18 0.86
253 254 8.972262 TTTTGCAACATACGCAGAAAATTATA 57.028 26.923 0.00 0.00 41.18 0.98
254 255 7.881643 TTTTGCAACATACGCAGAAAATTAT 57.118 28.000 0.00 0.00 41.18 1.28
255 256 7.700322 TTTTTGCAACATACGCAGAAAATTA 57.300 28.000 0.00 0.00 39.60 1.40
256 257 6.595772 TTTTTGCAACATACGCAGAAAATT 57.404 29.167 0.00 0.00 39.60 1.82
257 258 6.783892 ATTTTTGCAACATACGCAGAAAAT 57.216 29.167 0.00 7.97 43.82 1.82
258 259 6.417327 CAATTTTTGCAACATACGCAGAAAA 58.583 32.000 0.00 6.39 43.82 2.29
259 260 5.972018 CAATTTTTGCAACATACGCAGAAA 58.028 33.333 0.00 3.73 44.45 2.52
260 261 5.573296 CAATTTTTGCAACATACGCAGAA 57.427 34.783 0.00 0.00 41.18 3.02
274 275 4.608890 GCCGAAGATGTGTTGCAATTTTTG 60.609 41.667 0.59 0.00 0.00 2.44
275 276 3.494251 GCCGAAGATGTGTTGCAATTTTT 59.506 39.130 0.59 0.00 0.00 1.94
276 277 3.059166 GCCGAAGATGTGTTGCAATTTT 58.941 40.909 0.59 0.00 0.00 1.82
277 278 2.610232 GGCCGAAGATGTGTTGCAATTT 60.610 45.455 0.59 0.00 0.00 1.82
278 279 1.067635 GGCCGAAGATGTGTTGCAATT 60.068 47.619 0.59 0.00 0.00 2.32
279 280 0.527565 GGCCGAAGATGTGTTGCAAT 59.472 50.000 0.59 0.00 0.00 3.56
280 281 1.851021 CGGCCGAAGATGTGTTGCAA 61.851 55.000 24.07 0.00 0.00 4.08
281 282 2.324330 CGGCCGAAGATGTGTTGCA 61.324 57.895 24.07 0.00 0.00 4.08
282 283 2.480555 CGGCCGAAGATGTGTTGC 59.519 61.111 24.07 0.00 0.00 4.17
283 284 2.480555 GCGGCCGAAGATGTGTTG 59.519 61.111 33.48 0.00 0.00 3.33
284 285 3.118454 CGCGGCCGAAGATGTGTT 61.118 61.111 33.48 0.00 36.29 3.32
303 304 1.922135 ATAACTTGCCCAAGCGCGTG 61.922 55.000 16.87 16.87 44.31 5.34
304 305 1.644786 GATAACTTGCCCAAGCGCGT 61.645 55.000 8.43 0.00 44.31 6.01
305 306 1.062525 GATAACTTGCCCAAGCGCG 59.937 57.895 0.00 0.00 44.31 6.86
306 307 0.811281 AAGATAACTTGCCCAAGCGC 59.189 50.000 0.00 0.00 44.31 5.92
307 308 2.549633 CAAGATAACTTGCCCAAGCG 57.450 50.000 7.88 0.00 45.19 4.68
315 316 3.812799 CGGTGACCGCCAAGATAACTTG 61.813 54.545 12.53 5.78 44.11 3.16
316 317 1.674817 CGGTGACCGCCAAGATAACTT 60.675 52.381 12.53 0.00 41.17 2.66
317 318 0.108329 CGGTGACCGCCAAGATAACT 60.108 55.000 12.53 0.00 41.17 2.24
318 319 2.380081 CGGTGACCGCCAAGATAAC 58.620 57.895 12.53 0.00 41.17 1.89
319 320 4.924019 CGGTGACCGCCAAGATAA 57.076 55.556 12.53 0.00 41.17 1.75
329 330 2.589442 TCGGCAACAACGGTGACC 60.589 61.111 7.88 4.45 0.00 4.02
330 331 2.604174 CCTCGGCAACAACGGTGAC 61.604 63.158 7.88 0.00 0.00 3.67
331 332 2.280524 CCTCGGCAACAACGGTGA 60.281 61.111 7.88 0.00 0.00 4.02
332 333 3.353836 CCCTCGGCAACAACGGTG 61.354 66.667 0.00 0.00 0.00 4.94
333 334 3.552384 TCCCTCGGCAACAACGGT 61.552 61.111 0.00 0.00 0.00 4.83
334 335 3.047877 GTCCCTCGGCAACAACGG 61.048 66.667 0.00 0.00 0.00 4.44
335 336 2.280524 TGTCCCTCGGCAACAACG 60.281 61.111 0.00 0.00 0.00 4.10
336 337 0.951040 CTCTGTCCCTCGGCAACAAC 60.951 60.000 0.00 0.00 0.00 3.32
337 338 1.118965 TCTCTGTCCCTCGGCAACAA 61.119 55.000 0.00 0.00 0.00 2.83
338 339 1.533033 TCTCTGTCCCTCGGCAACA 60.533 57.895 0.00 0.00 0.00 3.33
339 340 1.079750 GTCTCTGTCCCTCGGCAAC 60.080 63.158 0.00 0.00 0.00 4.17
340 341 0.904865 ATGTCTCTGTCCCTCGGCAA 60.905 55.000 0.00 0.00 0.00 4.52
341 342 1.305297 ATGTCTCTGTCCCTCGGCA 60.305 57.895 0.00 0.00 0.00 5.69
342 343 1.142748 CATGTCTCTGTCCCTCGGC 59.857 63.158 0.00 0.00 0.00 5.54
343 344 1.142748 GCATGTCTCTGTCCCTCGG 59.857 63.158 0.00 0.00 0.00 4.63
344 345 1.226802 CGCATGTCTCTGTCCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
345 346 0.459237 CACGCATGTCTCTGTCCCTC 60.459 60.000 0.00 0.00 0.00 4.30
346 347 1.593787 CACGCATGTCTCTGTCCCT 59.406 57.895 0.00 0.00 0.00 4.20
347 348 1.448540 CCACGCATGTCTCTGTCCC 60.449 63.158 0.00 0.00 0.00 4.46
348 349 0.320771 AACCACGCATGTCTCTGTCC 60.321 55.000 0.00 0.00 0.00 4.02
349 350 2.363788 TAACCACGCATGTCTCTGTC 57.636 50.000 0.00 0.00 0.00 3.51
350 351 2.688507 CTTAACCACGCATGTCTCTGT 58.311 47.619 0.00 0.00 0.00 3.41
351 352 1.394917 GCTTAACCACGCATGTCTCTG 59.605 52.381 0.00 0.00 0.00 3.35
352 353 1.001974 TGCTTAACCACGCATGTCTCT 59.998 47.619 0.00 0.00 0.00 3.10
353 354 1.394917 CTGCTTAACCACGCATGTCTC 59.605 52.381 0.00 0.00 35.32 3.36
354 355 1.442769 CTGCTTAACCACGCATGTCT 58.557 50.000 0.00 0.00 35.32 3.41
355 356 0.447801 CCTGCTTAACCACGCATGTC 59.552 55.000 0.00 0.00 35.32 3.06
356 357 1.586154 GCCTGCTTAACCACGCATGT 61.586 55.000 0.00 0.00 35.32 3.21
357 358 1.137404 GCCTGCTTAACCACGCATG 59.863 57.895 0.00 0.00 35.32 4.06
358 359 2.046285 GGCCTGCTTAACCACGCAT 61.046 57.895 0.00 0.00 35.32 4.73
359 360 2.671619 GGCCTGCTTAACCACGCA 60.672 61.111 0.00 0.00 34.54 5.24
360 361 2.671619 TGGCCTGCTTAACCACGC 60.672 61.111 3.32 0.00 0.00 5.34
361 362 3.263941 GTGGCCTGCTTAACCACG 58.736 61.111 3.32 0.00 44.02 4.94
363 364 1.074775 CAGGTGGCCTGCTTAACCA 59.925 57.895 3.32 0.00 45.13 3.67
364 365 4.002797 CAGGTGGCCTGCTTAACC 57.997 61.111 3.32 0.97 45.13 2.85
375 376 2.859273 GATCTGGCGTGGACAGGTGG 62.859 65.000 0.00 0.00 39.54 4.61
376 377 1.448540 GATCTGGCGTGGACAGGTG 60.449 63.158 0.00 0.00 39.54 4.00
377 378 2.982130 GATCTGGCGTGGACAGGT 59.018 61.111 0.00 0.00 39.54 4.00
378 379 2.202797 CGATCTGGCGTGGACAGG 60.203 66.667 0.00 0.00 39.54 4.00
379 380 2.202797 CCGATCTGGCGTGGACAG 60.203 66.667 0.00 0.00 40.64 3.51
388 389 3.873026 GATCAGCCGGCCGATCTGG 62.873 68.421 35.25 17.91 44.43 3.86
389 390 2.356793 GATCAGCCGGCCGATCTG 60.357 66.667 35.25 29.97 36.04 2.90
390 391 3.620785 GGATCAGCCGGCCGATCT 61.621 66.667 38.40 20.49 38.47 2.75
391 392 4.688966 GGGATCAGCCGGCCGATC 62.689 72.222 35.02 35.02 37.83 3.69
392 393 3.707895 TATAGGGATCAGCCGGCCGAT 62.708 57.143 30.73 25.07 37.63 4.18
393 394 2.435120 TATAGGGATCAGCCGGCCGA 62.435 60.000 30.73 21.05 37.63 5.54
394 395 1.949847 CTATAGGGATCAGCCGGCCG 61.950 65.000 26.15 21.04 37.63 6.13
395 396 1.617947 CCTATAGGGATCAGCCGGCC 61.618 65.000 26.15 7.48 37.63 6.13
396 397 0.614979 TCCTATAGGGATCAGCCGGC 60.615 60.000 21.89 21.89 39.58 6.13
397 398 3.691820 TCCTATAGGGATCAGCCGG 57.308 57.895 18.97 0.00 39.58 6.13
405 406 1.552486 CCAAGGCCGATCCTATAGGGA 60.552 57.143 18.97 6.19 46.94 4.20
406 407 0.905357 CCAAGGCCGATCCTATAGGG 59.095 60.000 18.97 3.70 46.94 3.53
407 408 0.905357 CCCAAGGCCGATCCTATAGG 59.095 60.000 13.07 13.07 46.94 2.57
408 409 0.250513 GCCCAAGGCCGATCCTATAG 59.749 60.000 0.00 0.00 46.94 1.31
409 410 2.372852 GCCCAAGGCCGATCCTATA 58.627 57.895 0.00 0.00 46.94 1.31
410 411 3.161557 GCCCAAGGCCGATCCTAT 58.838 61.111 0.00 0.00 46.94 2.57
420 421 2.363359 GGAAATATGCTCAAGCCCAAGG 59.637 50.000 0.00 0.00 41.18 3.61
421 422 3.025978 TGGAAATATGCTCAAGCCCAAG 58.974 45.455 0.00 0.00 41.18 3.61
422 423 3.025978 CTGGAAATATGCTCAAGCCCAA 58.974 45.455 0.00 0.00 41.18 4.12
423 424 2.658285 CTGGAAATATGCTCAAGCCCA 58.342 47.619 0.00 0.00 41.18 5.36
424 425 1.339291 GCTGGAAATATGCTCAAGCCC 59.661 52.381 0.00 0.00 41.18 5.19
425 426 2.305009 AGCTGGAAATATGCTCAAGCC 58.695 47.619 9.78 0.00 40.26 4.35
431 432 6.847421 AAAAGAAAGAGCTGGAAATATGCT 57.153 33.333 0.00 0.00 40.02 3.79
454 455 3.951775 ATGTGCTTAATCCCGCAAAAA 57.048 38.095 0.00 0.00 37.97 1.94
455 456 3.951775 AATGTGCTTAATCCCGCAAAA 57.048 38.095 0.00 0.00 37.97 2.44
456 457 4.400884 ACATAATGTGCTTAATCCCGCAAA 59.599 37.500 0.00 0.00 37.97 3.68
457 458 3.951037 ACATAATGTGCTTAATCCCGCAA 59.049 39.130 0.00 0.00 37.97 4.85
458 459 3.550820 ACATAATGTGCTTAATCCCGCA 58.449 40.909 0.00 0.00 0.00 5.69
459 460 5.682943 TTACATAATGTGCTTAATCCCGC 57.317 39.130 0.00 0.00 0.00 6.13
460 461 7.643764 CACTTTTACATAATGTGCTTAATCCCG 59.356 37.037 0.00 0.00 0.00 5.14
461 462 8.856490 CACTTTTACATAATGTGCTTAATCCC 57.144 34.615 0.00 0.00 0.00 3.85
470 471 6.558009 AGAGCATGCACTTTTACATAATGTG 58.442 36.000 21.98 0.00 0.00 3.21
471 472 6.764308 AGAGCATGCACTTTTACATAATGT 57.236 33.333 21.98 0.00 0.00 2.71
472 473 7.645340 GGTTAGAGCATGCACTTTTACATAATG 59.355 37.037 22.83 0.00 0.00 1.90
473 474 7.339212 TGGTTAGAGCATGCACTTTTACATAAT 59.661 33.333 22.83 0.00 0.00 1.28
474 475 6.657117 TGGTTAGAGCATGCACTTTTACATAA 59.343 34.615 22.83 6.56 0.00 1.90
475 476 6.176896 TGGTTAGAGCATGCACTTTTACATA 58.823 36.000 22.83 9.07 0.00 2.29
476 477 5.009631 TGGTTAGAGCATGCACTTTTACAT 58.990 37.500 22.83 0.00 0.00 2.29
477 478 4.393834 TGGTTAGAGCATGCACTTTTACA 58.606 39.130 22.83 13.62 0.00 2.41
478 479 5.371115 TTGGTTAGAGCATGCACTTTTAC 57.629 39.130 22.83 16.77 0.00 2.01
479 480 5.622007 GCATTGGTTAGAGCATGCACTTTTA 60.622 40.000 22.83 2.27 33.54 1.52
480 481 4.813027 CATTGGTTAGAGCATGCACTTTT 58.187 39.130 22.83 0.00 0.00 2.27
481 482 3.367703 GCATTGGTTAGAGCATGCACTTT 60.368 43.478 22.83 0.00 33.54 2.66
482 483 2.165030 GCATTGGTTAGAGCATGCACTT 59.835 45.455 22.83 8.33 33.54 3.16
483 484 1.747355 GCATTGGTTAGAGCATGCACT 59.253 47.619 21.45 21.45 33.54 4.40
484 485 1.473677 TGCATTGGTTAGAGCATGCAC 59.526 47.619 21.98 14.59 36.23 4.57
485 486 1.836802 TGCATTGGTTAGAGCATGCA 58.163 45.000 21.98 1.57 37.58 3.96
486 487 2.945447 TTGCATTGGTTAGAGCATGC 57.055 45.000 10.51 10.51 36.80 4.06
487 488 4.642445 TGATTGCATTGGTTAGAGCATG 57.358 40.909 0.00 0.00 36.80 4.06
488 489 5.664294 TTTGATTGCATTGGTTAGAGCAT 57.336 34.783 0.00 0.00 36.80 3.79
489 490 5.243507 TCTTTTGATTGCATTGGTTAGAGCA 59.756 36.000 0.00 0.00 34.79 4.26
490 491 5.713025 TCTTTTGATTGCATTGGTTAGAGC 58.287 37.500 0.00 0.00 0.00 4.09
491 492 6.690098 CGATCTTTTGATTGCATTGGTTAGAG 59.310 38.462 0.00 0.00 39.67 2.43
492 493 6.374053 TCGATCTTTTGATTGCATTGGTTAGA 59.626 34.615 0.00 0.00 39.67 2.10
493 494 6.554419 TCGATCTTTTGATTGCATTGGTTAG 58.446 36.000 0.00 0.00 39.67 2.34
494 495 6.507958 TCGATCTTTTGATTGCATTGGTTA 57.492 33.333 0.00 0.00 39.67 2.85
495 496 5.389859 TCGATCTTTTGATTGCATTGGTT 57.610 34.783 0.00 0.00 39.67 3.67
496 497 5.587388 ATCGATCTTTTGATTGCATTGGT 57.413 34.783 0.00 0.00 39.67 3.67
497 498 6.532302 TCAAATCGATCTTTTGATTGCATTGG 59.468 34.615 13.61 0.00 37.97 3.16
498 499 7.514573 TCAAATCGATCTTTTGATTGCATTG 57.485 32.000 13.61 0.92 37.97 2.82
499 500 7.977293 TCATCAAATCGATCTTTTGATTGCATT 59.023 29.630 21.55 7.02 46.45 3.56
500 501 7.485810 TCATCAAATCGATCTTTTGATTGCAT 58.514 30.769 21.55 7.52 46.45 3.96
501 502 6.854778 TCATCAAATCGATCTTTTGATTGCA 58.145 32.000 21.55 11.81 46.45 4.08
502 503 7.745022 TTCATCAAATCGATCTTTTGATTGC 57.255 32.000 21.55 0.00 46.45 3.56
506 507 9.398170 GTCTTTTTCATCAAATCGATCTTTTGA 57.602 29.630 17.70 17.70 44.60 2.69
507 508 9.403110 AGTCTTTTTCATCAAATCGATCTTTTG 57.597 29.630 0.00 0.42 35.79 2.44
510 511 9.658799 TCTAGTCTTTTTCATCAAATCGATCTT 57.341 29.630 0.00 0.00 29.21 2.40
511 512 9.092876 GTCTAGTCTTTTTCATCAAATCGATCT 57.907 33.333 0.00 0.00 29.21 2.75
512 513 8.873830 TGTCTAGTCTTTTTCATCAAATCGATC 58.126 33.333 0.00 0.00 29.21 3.69
513 514 8.777865 TGTCTAGTCTTTTTCATCAAATCGAT 57.222 30.769 0.00 0.00 33.27 3.59
514 515 8.495949 GTTGTCTAGTCTTTTTCATCAAATCGA 58.504 33.333 0.00 0.00 0.00 3.59
515 516 8.282592 TGTTGTCTAGTCTTTTTCATCAAATCG 58.717 33.333 0.00 0.00 0.00 3.34
516 517 9.387123 GTGTTGTCTAGTCTTTTTCATCAAATC 57.613 33.333 0.00 0.00 0.00 2.17
517 518 8.902806 TGTGTTGTCTAGTCTTTTTCATCAAAT 58.097 29.630 0.00 0.00 0.00 2.32
518 519 8.275015 TGTGTTGTCTAGTCTTTTTCATCAAA 57.725 30.769 0.00 0.00 0.00 2.69
519 520 7.857734 TGTGTTGTCTAGTCTTTTTCATCAA 57.142 32.000 0.00 0.00 0.00 2.57
520 521 8.450578 AATGTGTTGTCTAGTCTTTTTCATCA 57.549 30.769 0.00 0.00 0.00 3.07
524 525 9.953825 CGTATAATGTGTTGTCTAGTCTTTTTC 57.046 33.333 0.00 0.00 0.00 2.29
525 526 9.485206 ACGTATAATGTGTTGTCTAGTCTTTTT 57.515 29.630 0.00 0.00 0.00 1.94
526 527 9.136952 GACGTATAATGTGTTGTCTAGTCTTTT 57.863 33.333 0.00 0.00 0.00 2.27
527 528 7.484007 CGACGTATAATGTGTTGTCTAGTCTTT 59.516 37.037 0.00 0.00 0.00 2.52
528 529 6.965500 CGACGTATAATGTGTTGTCTAGTCTT 59.035 38.462 0.00 0.00 0.00 3.01
529 530 6.314648 TCGACGTATAATGTGTTGTCTAGTCT 59.685 38.462 0.00 0.00 0.00 3.24
530 531 6.410337 GTCGACGTATAATGTGTTGTCTAGTC 59.590 42.308 0.00 0.00 0.00 2.59
531 532 6.128200 TGTCGACGTATAATGTGTTGTCTAGT 60.128 38.462 11.62 0.00 0.00 2.57
532 533 6.194142 GTGTCGACGTATAATGTGTTGTCTAG 59.806 42.308 11.62 0.00 0.00 2.43
533 534 6.023435 GTGTCGACGTATAATGTGTTGTCTA 58.977 40.000 11.62 0.00 0.00 2.59
534 535 4.855388 GTGTCGACGTATAATGTGTTGTCT 59.145 41.667 11.62 0.00 0.00 3.41
535 536 4.618067 TGTGTCGACGTATAATGTGTTGTC 59.382 41.667 11.62 0.00 0.00 3.18
536 537 4.548494 TGTGTCGACGTATAATGTGTTGT 58.452 39.130 11.62 0.00 0.00 3.32
537 538 5.696260 ATGTGTCGACGTATAATGTGTTG 57.304 39.130 11.62 0.00 0.00 3.33
538 539 6.097356 AGAATGTGTCGACGTATAATGTGTT 58.903 36.000 11.62 0.00 0.00 3.32
539 540 5.647589 AGAATGTGTCGACGTATAATGTGT 58.352 37.500 11.62 0.00 0.00 3.72
540 541 7.431376 AGTTAGAATGTGTCGACGTATAATGTG 59.569 37.037 11.62 0.00 0.00 3.21
541 542 7.431376 CAGTTAGAATGTGTCGACGTATAATGT 59.569 37.037 11.62 0.00 0.00 2.71
542 543 7.642586 TCAGTTAGAATGTGTCGACGTATAATG 59.357 37.037 11.62 2.88 0.00 1.90
543 544 7.642978 GTCAGTTAGAATGTGTCGACGTATAAT 59.357 37.037 11.62 3.11 0.00 1.28
544 545 6.963242 GTCAGTTAGAATGTGTCGACGTATAA 59.037 38.462 11.62 1.63 0.00 0.98
545 546 6.481134 GTCAGTTAGAATGTGTCGACGTATA 58.519 40.000 11.62 0.00 0.00 1.47
546 547 5.330295 GTCAGTTAGAATGTGTCGACGTAT 58.670 41.667 11.62 4.77 0.00 3.06
547 548 4.667415 CGTCAGTTAGAATGTGTCGACGTA 60.667 45.833 11.62 2.21 39.93 3.57
548 549 3.562505 GTCAGTTAGAATGTGTCGACGT 58.437 45.455 11.62 0.00 0.00 4.34
549 550 2.588539 CGTCAGTTAGAATGTGTCGACG 59.411 50.000 11.62 0.00 38.99 5.12
550 551 2.341760 GCGTCAGTTAGAATGTGTCGAC 59.658 50.000 9.11 9.11 0.00 4.20
551 552 2.592194 GCGTCAGTTAGAATGTGTCGA 58.408 47.619 0.00 0.00 0.00 4.20
552 553 1.654105 GGCGTCAGTTAGAATGTGTCG 59.346 52.381 0.00 0.00 0.00 4.35
553 554 2.960819 AGGCGTCAGTTAGAATGTGTC 58.039 47.619 0.00 0.00 0.00 3.67
554 555 3.510360 ACTAGGCGTCAGTTAGAATGTGT 59.490 43.478 0.00 0.00 0.00 3.72
555 556 4.106197 GACTAGGCGTCAGTTAGAATGTG 58.894 47.826 0.00 0.00 42.37 3.21
556 557 4.017808 AGACTAGGCGTCAGTTAGAATGT 58.982 43.478 0.00 0.00 45.32 2.71
557 558 4.096532 TCAGACTAGGCGTCAGTTAGAATG 59.903 45.833 0.00 0.00 45.32 2.67
558 559 4.096682 GTCAGACTAGGCGTCAGTTAGAAT 59.903 45.833 0.00 0.00 45.32 2.40
559 560 3.439476 GTCAGACTAGGCGTCAGTTAGAA 59.561 47.826 0.00 0.00 45.32 2.10
560 561 3.008330 GTCAGACTAGGCGTCAGTTAGA 58.992 50.000 0.00 0.00 45.32 2.10
561 562 3.011119 AGTCAGACTAGGCGTCAGTTAG 58.989 50.000 0.00 0.00 45.32 2.34
562 563 2.747989 CAGTCAGACTAGGCGTCAGTTA 59.252 50.000 1.67 0.00 45.32 2.24
563 564 1.542030 CAGTCAGACTAGGCGTCAGTT 59.458 52.381 1.67 0.00 45.32 3.16
564 565 1.169577 CAGTCAGACTAGGCGTCAGT 58.830 55.000 1.67 0.00 45.32 3.41
591 592 2.343843 CGGTCGTATACTCGTATCTCGG 59.656 54.545 0.56 0.00 40.32 4.63
602 603 1.365267 GGGGGAAGCGGTCGTATAC 59.635 63.158 0.00 0.00 0.00 1.47
603 604 0.687098 TTGGGGGAAGCGGTCGTATA 60.687 55.000 0.00 0.00 0.00 1.47
604 605 1.555477 TTTGGGGGAAGCGGTCGTAT 61.555 55.000 0.00 0.00 0.00 3.06
606 607 3.122727 TTTTGGGGGAAGCGGTCGT 62.123 57.895 0.00 0.00 0.00 4.34
607 608 2.281900 TTTTGGGGGAAGCGGTCG 60.282 61.111 0.00 0.00 0.00 4.79
608 609 1.074248 TCTTTTGGGGGAAGCGGTC 59.926 57.895 0.00 0.00 0.00 4.79
609 610 1.228459 GTCTTTTGGGGGAAGCGGT 60.228 57.895 0.00 0.00 0.00 5.68
610 611 1.977009 GGTCTTTTGGGGGAAGCGG 60.977 63.158 0.00 0.00 0.00 5.52
611 612 0.611896 ATGGTCTTTTGGGGGAAGCG 60.612 55.000 0.00 0.00 0.00 4.68
612 613 1.186200 GATGGTCTTTTGGGGGAAGC 58.814 55.000 0.00 0.00 0.00 3.86
613 614 1.852633 GGATGGTCTTTTGGGGGAAG 58.147 55.000 0.00 0.00 0.00 3.46
747 781 2.207229 GGAGGGGTTGGTTGGTTGC 61.207 63.158 0.00 0.00 0.00 4.17
759 793 1.251251 CTTTGCTTTGAGTGGAGGGG 58.749 55.000 0.00 0.00 0.00 4.79
846 880 2.729491 GTTGCGCCGTGCTTTTCC 60.729 61.111 4.18 0.00 46.63 3.13
889 923 2.111878 GATGGGCGATGGTGGGAG 59.888 66.667 0.00 0.00 0.00 4.30
892 926 1.152694 AATGGATGGGCGATGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
898 932 1.224315 CAGTGGAATGGATGGGCGA 59.776 57.895 0.00 0.00 0.00 5.54
899 933 1.077501 ACAGTGGAATGGATGGGCG 60.078 57.895 0.00 0.00 0.00 6.13
900 934 1.669999 GCACAGTGGAATGGATGGGC 61.670 60.000 1.84 0.00 34.49 5.36
903 937 1.996786 GCGGCACAGTGGAATGGATG 61.997 60.000 1.84 0.00 0.00 3.51
904 938 1.750399 GCGGCACAGTGGAATGGAT 60.750 57.895 1.84 0.00 0.00 3.41
933 968 4.777854 GGAAATGGGGGCGGGCTT 62.778 66.667 0.26 0.00 0.00 4.35
940 975 1.645402 ATCGAGGGTGGAAATGGGGG 61.645 60.000 0.00 0.00 0.00 5.40
1107 1149 0.390735 ACGTCGCATTGTAGAACCCC 60.391 55.000 0.00 0.00 0.00 4.95
1434 1476 0.311165 ACTTGTCGTCGTGGTCTCTG 59.689 55.000 0.00 0.00 0.00 3.35
1449 1491 7.910441 AAAGATGCCCAATTAAATCAACTTG 57.090 32.000 0.00 0.00 0.00 3.16
1570 1613 4.373116 GGCGCCAGGTCGTTCTCA 62.373 66.667 24.80 0.00 0.00 3.27
1678 1721 2.433970 GGAGTCATGGAGAGGAAAGGAG 59.566 54.545 0.00 0.00 0.00 3.69
1690 1733 1.293924 GTGAAGCGATGGAGTCATGG 58.706 55.000 0.00 0.00 32.98 3.66
1691 1734 0.926155 CGTGAAGCGATGGAGTCATG 59.074 55.000 0.00 0.00 44.77 3.07
1692 1735 0.807667 GCGTGAAGCGATGGAGTCAT 60.808 55.000 0.00 0.00 44.77 3.06
1693 1736 1.446099 GCGTGAAGCGATGGAGTCA 60.446 57.895 0.00 0.00 44.77 3.41
1694 1737 3.389206 GCGTGAAGCGATGGAGTC 58.611 61.111 0.00 0.00 44.77 3.36
1751 1794 2.603135 GATGCCATTGTCAGTGCGGC 62.603 60.000 0.00 0.00 43.28 6.53
2264 2307 0.911045 AGAACCCGATAAACCCCCGT 60.911 55.000 0.00 0.00 0.00 5.28
2265 2308 0.179065 GAGAACCCGATAAACCCCCG 60.179 60.000 0.00 0.00 0.00 5.73
2346 2400 0.322546 CCCCCTCAGCTAAAAAGCGT 60.323 55.000 0.00 0.00 40.27 5.07
2347 2401 0.322546 ACCCCCTCAGCTAAAAAGCG 60.323 55.000 0.00 0.00 40.27 4.68
2365 2419 6.854496 TTTGTACAAGTTACAGGTGATGAC 57.146 37.500 8.56 0.00 0.00 3.06
2430 2512 7.481642 ACGACCAGATGTACTTAACAGATAAG 58.518 38.462 0.00 0.00 45.48 1.73
2541 2623 3.447742 TGCATGATAAGTAGCTGACACG 58.552 45.455 0.00 0.00 0.00 4.49
2543 2625 5.089970 ACTTGCATGATAAGTAGCTGACA 57.910 39.130 12.43 0.00 36.66 3.58
2566 2648 3.063997 AGAAGTTTGCTCACACAAGTTCG 59.936 43.478 0.00 0.00 34.69 3.95
2589 2671 7.914346 AGTATTTAGTTTCGGTTGTCTCGATAG 59.086 37.037 0.00 0.00 36.49 2.08
2593 2675 5.444218 GCAGTATTTAGTTTCGGTTGTCTCG 60.444 44.000 0.00 0.00 0.00 4.04
2603 2685 4.120589 CGGAGGGAGCAGTATTTAGTTTC 58.879 47.826 0.00 0.00 0.00 2.78
2616 2698 1.032114 CATTTTGGGACGGAGGGAGC 61.032 60.000 0.00 0.00 0.00 4.70
2618 2700 1.659022 TACATTTTGGGACGGAGGGA 58.341 50.000 0.00 0.00 0.00 4.20
2619 2701 2.026636 TCTTACATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2620 2702 3.007635 GTCTTACATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2621 2703 3.670625 TGTCTTACATTTTGGGACGGAG 58.329 45.455 0.00 0.00 0.00 4.63
2622 2704 3.773418 TGTCTTACATTTTGGGACGGA 57.227 42.857 0.00 0.00 0.00 4.69
2663 2745 4.515944 TGTCCCGAAATGTATGACGTTTTT 59.484 37.500 0.00 0.00 37.43 1.94
2664 2746 4.066490 TGTCCCGAAATGTATGACGTTTT 58.934 39.130 0.00 0.00 37.43 2.43
2665 2747 3.666274 TGTCCCGAAATGTATGACGTTT 58.334 40.909 0.00 0.00 39.79 3.60
2666 2748 3.056393 TCTGTCCCGAAATGTATGACGTT 60.056 43.478 0.00 0.00 0.00 3.99
2667 2749 2.494471 TCTGTCCCGAAATGTATGACGT 59.506 45.455 0.00 0.00 0.00 4.34
2668 2750 3.116300 CTCTGTCCCGAAATGTATGACG 58.884 50.000 0.00 0.00 0.00 4.35
2669 2751 3.458189 CCTCTGTCCCGAAATGTATGAC 58.542 50.000 0.00 0.00 0.00 3.06
2670 2752 2.434336 CCCTCTGTCCCGAAATGTATGA 59.566 50.000 0.00 0.00 0.00 2.15
2671 2753 2.434336 TCCCTCTGTCCCGAAATGTATG 59.566 50.000 0.00 0.00 0.00 2.39
2672 2754 2.700897 CTCCCTCTGTCCCGAAATGTAT 59.299 50.000 0.00 0.00 0.00 2.29
2673 2755 2.108168 CTCCCTCTGTCCCGAAATGTA 58.892 52.381 0.00 0.00 0.00 2.29
2674 2756 0.905357 CTCCCTCTGTCCCGAAATGT 59.095 55.000 0.00 0.00 0.00 2.71
2675 2757 0.905357 ACTCCCTCTGTCCCGAAATG 59.095 55.000 0.00 0.00 0.00 2.32
2676 2758 2.108970 GTACTCCCTCTGTCCCGAAAT 58.891 52.381 0.00 0.00 0.00 2.17
2677 2759 1.076677 AGTACTCCCTCTGTCCCGAAA 59.923 52.381 0.00 0.00 0.00 3.46
2678 2760 0.702902 AGTACTCCCTCTGTCCCGAA 59.297 55.000 0.00 0.00 0.00 4.30
2679 2761 0.702902 AAGTACTCCCTCTGTCCCGA 59.297 55.000 0.00 0.00 0.00 5.14
2680 2762 1.558233 AAAGTACTCCCTCTGTCCCG 58.442 55.000 0.00 0.00 0.00 5.14
2681 2763 3.710724 AGTAAAGTACTCCCTCTGTCCC 58.289 50.000 0.00 0.00 32.47 4.46
2682 2764 5.535783 GGATAGTAAAGTACTCCCTCTGTCC 59.464 48.000 0.00 6.60 40.14 4.02
2683 2765 6.127793 TGGATAGTAAAGTACTCCCTCTGTC 58.872 44.000 0.00 1.31 40.14 3.51
2684 2766 6.088541 TGGATAGTAAAGTACTCCCTCTGT 57.911 41.667 0.00 0.00 40.14 3.41
2685 2767 7.287927 TCATTGGATAGTAAAGTACTCCCTCTG 59.712 40.741 0.00 0.00 40.14 3.35
2686 2768 7.288158 GTCATTGGATAGTAAAGTACTCCCTCT 59.712 40.741 0.00 0.00 40.14 3.69
2687 2769 7.288158 AGTCATTGGATAGTAAAGTACTCCCTC 59.712 40.741 0.00 0.00 40.14 4.30
2688 2770 7.070074 CAGTCATTGGATAGTAAAGTACTCCCT 59.930 40.741 0.00 0.00 40.14 4.20
2689 2771 7.210873 CAGTCATTGGATAGTAAAGTACTCCC 58.789 42.308 0.00 0.00 40.14 4.30
2732 2814 4.589216 AATTGTAGTGCATTTGTGCTGT 57.411 36.364 0.00 0.00 35.49 4.40
2733 2815 4.376615 GCAAATTGTAGTGCATTTGTGCTG 60.377 41.667 9.31 1.74 40.58 4.41
2734 2816 3.742369 GCAAATTGTAGTGCATTTGTGCT 59.258 39.130 9.31 0.00 40.58 4.40
2785 2895 1.843753 CCGAAAACGTTCAAGTTGCAC 59.156 47.619 0.00 0.00 34.14 4.57
2794 2904 2.750301 AAACTCTGCCGAAAACGTTC 57.250 45.000 0.00 0.00 0.00 3.95
2805 2915 5.149977 GTTCATTGCTACAGAAAACTCTGC 58.850 41.667 2.05 0.00 41.19 4.26
2815 2925 5.335661 GGGTAAAACCTGTTCATTGCTACAG 60.336 44.000 10.19 10.19 41.08 2.74
2834 2944 9.457436 CAAAGCTTTCCTATTTTACTAGGGTAA 57.543 33.333 9.23 0.00 39.08 2.85
2835 2945 8.050930 CCAAAGCTTTCCTATTTTACTAGGGTA 58.949 37.037 9.23 0.00 39.08 3.69
2882 2994 3.968649 TGAAAGAGCAATTTCACTGCAC 58.031 40.909 11.13 0.00 42.68 4.57
2896 3008 7.324616 GGAATCGAAGTTGAACAAATGAAAGAG 59.675 37.037 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.