Multiple sequence alignment - TraesCS1A01G317600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G317600 chr1A 100.000 3454 0 0 1 3454 508947156 508943703 0.000000e+00 6379
1 TraesCS1A01G317600 chr1A 99.115 226 2 0 299 524 508933801 508933576 1.150000e-109 407
2 TraesCS1A01G317600 chr1A 98.230 226 4 0 299 524 27284160 27283935 2.500000e-106 396
3 TraesCS1A01G317600 chr1A 97.175 177 5 0 1 177 88125787 88125963 2.010000e-77 300
4 TraesCS1A01G317600 chr1A 97.175 177 5 0 1 177 508955414 508955238 2.010000e-77 300
5 TraesCS1A01G317600 chr1A 90.551 127 12 0 172 298 509014417 509014291 5.930000e-38 169
6 TraesCS1A01G317600 chr3A 98.575 3158 43 2 297 3453 742272080 742268924 0.000000e+00 5581
7 TraesCS1A01G317600 chr3A 98.067 3155 49 4 299 3453 713855957 713852815 0.000000e+00 5478
8 TraesCS1A01G317600 chr7A 98.449 3159 45 3 298 3453 16704150 16700993 0.000000e+00 5559
9 TraesCS1A01G317600 chr7A 93.310 3184 174 24 299 3453 167946074 167949247 0.000000e+00 4663
10 TraesCS1A01G317600 chr7A 93.001 3186 181 28 299 3453 845366 842192 0.000000e+00 4610
11 TraesCS1A01G317600 chr7A 96.045 177 7 0 1 177 125428107 125427931 4.360000e-74 289
12 TraesCS1A01G317600 chr7A 96.045 177 7 0 1 177 367731356 367731532 4.360000e-74 289
13 TraesCS1A01G317600 chr7A 95.480 177 8 0 1 177 125419900 125419724 2.030000e-72 283
14 TraesCS1A01G317600 chr7A 95.480 177 8 0 1 177 701014538 701014714 2.030000e-72 283
15 TraesCS1A01G317600 chr5A 98.131 3156 41 5 298 3453 701899971 701903108 0.000000e+00 5485
16 TraesCS1A01G317600 chr5A 98.067 3156 47 3 299 3453 683606717 683603575 0.000000e+00 5478
17 TraesCS1A01G317600 chr5A 97.788 226 5 0 299 524 701905134 701905359 1.160000e-104 390
18 TraesCS1A01G317600 chr4B 93.028 3184 179 27 299 3453 605565891 605562722 0.000000e+00 4610
19 TraesCS1A01G317600 chr6D 94.473 2768 144 8 692 3453 446057393 446060157 0.000000e+00 4255
20 TraesCS1A01G317600 chr6D 82.396 409 50 16 301 693 446057050 446057452 1.540000e-88 337
21 TraesCS1A01G317600 chr2A 90.505 495 32 2 299 790 604692844 604693326 1.050000e-179 640
22 TraesCS1A01G317600 chr2A 96.284 296 11 0 299 594 778341835 778342130 1.440000e-133 486
23 TraesCS1A01G317600 chr2A 95.480 177 8 0 1 177 731273920 731273744 2.030000e-72 283
24 TraesCS1A01G317600 chrUn 95.480 177 8 0 1 177 74899679 74899855 2.030000e-72 283
25 TraesCS1A01G317600 chr6A 95.480 177 8 0 1 177 618037652 618037476 2.030000e-72 283
26 TraesCS1A01G317600 chr1B 100.000 127 0 0 172 298 555950595 555950469 5.760000e-58 235
27 TraesCS1A01G317600 chr1D 92.913 127 9 0 172 298 412236407 412236281 5.890000e-43 185
28 TraesCS1A01G317600 chr1D 91.339 127 11 0 172 298 412227278 412227152 1.270000e-39 174
29 TraesCS1A01G317600 chr1D 90.984 122 11 0 177 298 412460972 412460851 7.670000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G317600 chr1A 508943703 508947156 3453 True 6379.0 6379 100.0000 1 3454 1 chr1A.!!$R3 3453
1 TraesCS1A01G317600 chr3A 742268924 742272080 3156 True 5581.0 5581 98.5750 297 3453 1 chr3A.!!$R2 3156
2 TraesCS1A01G317600 chr3A 713852815 713855957 3142 True 5478.0 5478 98.0670 299 3453 1 chr3A.!!$R1 3154
3 TraesCS1A01G317600 chr7A 16700993 16704150 3157 True 5559.0 5559 98.4490 298 3453 1 chr7A.!!$R2 3155
4 TraesCS1A01G317600 chr7A 167946074 167949247 3173 False 4663.0 4663 93.3100 299 3453 1 chr7A.!!$F1 3154
5 TraesCS1A01G317600 chr7A 842192 845366 3174 True 4610.0 4610 93.0010 299 3453 1 chr7A.!!$R1 3154
6 TraesCS1A01G317600 chr5A 683603575 683606717 3142 True 5478.0 5478 98.0670 299 3453 1 chr5A.!!$R1 3154
7 TraesCS1A01G317600 chr5A 701899971 701905359 5388 False 2937.5 5485 97.9595 298 3453 2 chr5A.!!$F1 3155
8 TraesCS1A01G317600 chr4B 605562722 605565891 3169 True 4610.0 4610 93.0280 299 3453 1 chr4B.!!$R1 3154
9 TraesCS1A01G317600 chr6D 446057050 446060157 3107 False 2296.0 4255 88.4345 301 3453 2 chr6D.!!$F1 3152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.036858 GCCCTGGCGCCAAAAATTAA 60.037 50.000 32.09 4.31 0.00 1.40 F
287 288 0.106318 GCCAGGGAGGAAATGCTCAT 60.106 55.000 4.30 0.00 41.22 2.90 F
289 290 1.213678 CCAGGGAGGAAATGCTCATCA 59.786 52.381 4.30 0.00 41.22 3.07 F
638 654 1.452145 GCCAAACTTCGCCAAGGTCA 61.452 55.000 0.00 0.00 33.37 4.02 F
923 965 3.135712 TCTTCCTGCTTTGTGGTAACTCA 59.864 43.478 0.00 0.00 38.54 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1354 1399 0.107456 CTTGTCCACACCTCAGCTGT 59.893 55.000 14.67 0.00 0.00 4.40 R
1435 1480 2.281517 CTCTTGCTTGATCTGCCTCAG 58.718 52.381 8.39 3.54 0.00 3.35 R
1628 1673 3.245229 TGTGGCTTGTATGAGTTGGGAAT 60.245 43.478 0.00 0.00 0.00 3.01 R
2235 2283 4.959210 GGAGCTAAGGATCCATCAGCTATA 59.041 45.833 25.89 3.59 46.42 1.31 R
3095 3150 0.404040 TTTGACCGCTTCTCCCCAAT 59.596 50.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.347114 GCCCTGGCGCCAAAAATT 59.653 55.556 32.09 0.00 0.00 1.82
26 27 1.594310 GCCCTGGCGCCAAAAATTA 59.406 52.632 32.09 5.20 0.00 1.40
27 28 0.036858 GCCCTGGCGCCAAAAATTAA 60.037 50.000 32.09 4.31 0.00 1.40
28 29 1.406751 GCCCTGGCGCCAAAAATTAAT 60.407 47.619 32.09 0.00 0.00 1.40
29 30 2.939198 GCCCTGGCGCCAAAAATTAATT 60.939 45.455 32.09 0.00 0.00 1.40
30 31 3.680196 GCCCTGGCGCCAAAAATTAATTA 60.680 43.478 32.09 1.95 0.00 1.40
31 32 4.119136 CCCTGGCGCCAAAAATTAATTAG 58.881 43.478 32.09 13.77 0.00 1.73
32 33 4.382577 CCCTGGCGCCAAAAATTAATTAGT 60.383 41.667 32.09 0.00 0.00 2.24
33 34 5.175127 CCTGGCGCCAAAAATTAATTAGTT 58.825 37.500 32.09 0.00 0.00 2.24
34 35 5.641636 CCTGGCGCCAAAAATTAATTAGTTT 59.358 36.000 32.09 0.41 0.00 2.66
35 36 6.814146 CCTGGCGCCAAAAATTAATTAGTTTA 59.186 34.615 32.09 0.00 0.00 2.01
36 37 7.332182 CCTGGCGCCAAAAATTAATTAGTTTAA 59.668 33.333 32.09 0.00 34.37 1.52
37 38 8.779354 TGGCGCCAAAAATTAATTAGTTTAAT 57.221 26.923 30.74 0.00 41.31 1.40
68 69 4.054780 GATTAGTGCTAATCGGTGTGGA 57.945 45.455 13.97 0.00 41.12 4.02
69 70 2.953466 TAGTGCTAATCGGTGTGGAC 57.047 50.000 0.00 0.00 0.00 4.02
70 71 0.249398 AGTGCTAATCGGTGTGGACC 59.751 55.000 0.00 0.00 39.14 4.46
71 72 0.743345 GTGCTAATCGGTGTGGACCC 60.743 60.000 0.00 0.00 39.39 4.46
72 73 1.153229 GCTAATCGGTGTGGACCCC 60.153 63.158 0.00 0.00 39.39 4.95
73 74 1.906105 GCTAATCGGTGTGGACCCCA 61.906 60.000 0.00 0.00 39.39 4.96
81 82 4.058797 GTGGACCCCACGTTTCAG 57.941 61.111 0.00 0.00 44.95 3.02
82 83 2.112297 TGGACCCCACGTTTCAGC 59.888 61.111 0.00 0.00 0.00 4.26
83 84 2.430367 GGACCCCACGTTTCAGCT 59.570 61.111 0.00 0.00 0.00 4.24
84 85 1.228154 GGACCCCACGTTTCAGCTT 60.228 57.895 0.00 0.00 0.00 3.74
85 86 0.822121 GGACCCCACGTTTCAGCTTT 60.822 55.000 0.00 0.00 0.00 3.51
86 87 0.310854 GACCCCACGTTTCAGCTTTG 59.689 55.000 0.00 0.00 0.00 2.77
87 88 0.106918 ACCCCACGTTTCAGCTTTGA 60.107 50.000 0.00 0.00 0.00 2.69
88 89 0.310854 CCCCACGTTTCAGCTTTGAC 59.689 55.000 0.00 0.00 0.00 3.18
89 90 1.308998 CCCACGTTTCAGCTTTGACT 58.691 50.000 0.00 0.00 0.00 3.41
90 91 1.676006 CCCACGTTTCAGCTTTGACTT 59.324 47.619 0.00 0.00 0.00 3.01
91 92 2.875933 CCCACGTTTCAGCTTTGACTTA 59.124 45.455 0.00 0.00 0.00 2.24
92 93 3.058914 CCCACGTTTCAGCTTTGACTTAG 60.059 47.826 0.00 0.00 0.00 2.18
93 94 3.560068 CCACGTTTCAGCTTTGACTTAGT 59.440 43.478 0.00 0.00 0.00 2.24
94 95 4.318831 CCACGTTTCAGCTTTGACTTAGTC 60.319 45.833 5.27 5.27 0.00 2.59
95 96 4.270084 CACGTTTCAGCTTTGACTTAGTCA 59.730 41.667 11.42 11.42 41.09 3.41
116 117 2.146779 TCAACATTGACCGGTCCCA 58.853 52.632 31.19 18.59 31.01 4.37
117 118 0.250553 TCAACATTGACCGGTCCCAC 60.251 55.000 31.19 8.22 31.01 4.61
118 119 1.074248 AACATTGACCGGTCCCACC 59.926 57.895 31.19 7.79 34.05 4.61
119 120 1.423794 AACATTGACCGGTCCCACCT 61.424 55.000 31.19 10.79 35.66 4.00
120 121 1.377202 CATTGACCGGTCCCACCTG 60.377 63.158 31.19 16.51 35.66 4.00
121 122 1.846124 ATTGACCGGTCCCACCTGT 60.846 57.895 31.19 6.85 38.46 4.00
124 125 2.203938 ACCGGTCCCACCTGTCAT 60.204 61.111 0.00 0.00 29.12 3.06
125 126 1.079621 ACCGGTCCCACCTGTCATA 59.920 57.895 0.00 0.00 29.12 2.15
126 127 0.976073 ACCGGTCCCACCTGTCATAG 60.976 60.000 0.00 0.00 29.12 2.23
127 128 0.686441 CCGGTCCCACCTGTCATAGA 60.686 60.000 0.00 0.00 35.66 1.98
128 129 0.460311 CGGTCCCACCTGTCATAGAC 59.540 60.000 0.00 0.00 35.66 2.59
129 130 0.831307 GGTCCCACCTGTCATAGACC 59.169 60.000 0.00 0.00 37.25 3.85
130 131 0.831307 GTCCCACCTGTCATAGACCC 59.169 60.000 0.00 0.00 0.00 4.46
131 132 0.415830 TCCCACCTGTCATAGACCCA 59.584 55.000 0.00 0.00 0.00 4.51
132 133 1.203376 TCCCACCTGTCATAGACCCAA 60.203 52.381 0.00 0.00 0.00 4.12
133 134 1.633432 CCCACCTGTCATAGACCCAAA 59.367 52.381 0.00 0.00 0.00 3.28
134 135 2.618045 CCCACCTGTCATAGACCCAAAC 60.618 54.545 0.00 0.00 0.00 2.93
135 136 2.618045 CCACCTGTCATAGACCCAAACC 60.618 54.545 0.00 0.00 0.00 3.27
136 137 2.039746 CACCTGTCATAGACCCAAACCA 59.960 50.000 0.00 0.00 0.00 3.67
137 138 2.305927 ACCTGTCATAGACCCAAACCAG 59.694 50.000 0.00 0.00 0.00 4.00
138 139 2.359900 CTGTCATAGACCCAAACCAGC 58.640 52.381 0.00 0.00 0.00 4.85
139 140 1.004277 TGTCATAGACCCAAACCAGCC 59.996 52.381 0.00 0.00 0.00 4.85
140 141 1.282157 GTCATAGACCCAAACCAGCCT 59.718 52.381 0.00 0.00 0.00 4.58
141 142 1.281867 TCATAGACCCAAACCAGCCTG 59.718 52.381 0.00 0.00 0.00 4.85
142 143 1.281867 CATAGACCCAAACCAGCCTGA 59.718 52.381 0.00 0.00 0.00 3.86
143 144 0.984230 TAGACCCAAACCAGCCTGAG 59.016 55.000 0.00 0.00 0.00 3.35
144 145 0.768221 AGACCCAAACCAGCCTGAGA 60.768 55.000 0.00 0.00 0.00 3.27
145 146 0.606673 GACCCAAACCAGCCTGAGAC 60.607 60.000 0.00 0.00 0.00 3.36
146 147 1.352622 ACCCAAACCAGCCTGAGACA 61.353 55.000 0.00 0.00 0.00 3.41
147 148 0.890996 CCCAAACCAGCCTGAGACAC 60.891 60.000 0.00 0.00 0.00 3.67
148 149 0.109342 CCAAACCAGCCTGAGACACT 59.891 55.000 0.00 0.00 0.00 3.55
149 150 1.233019 CAAACCAGCCTGAGACACTG 58.767 55.000 0.00 0.00 0.00 3.66
150 151 1.131638 AAACCAGCCTGAGACACTGA 58.868 50.000 0.00 0.00 33.10 3.41
151 152 0.394565 AACCAGCCTGAGACACTGAC 59.605 55.000 0.00 0.00 33.10 3.51
152 153 1.294780 CCAGCCTGAGACACTGACC 59.705 63.158 0.00 0.00 33.10 4.02
153 154 1.475169 CCAGCCTGAGACACTGACCA 61.475 60.000 0.00 0.00 33.10 4.02
154 155 0.394192 CAGCCTGAGACACTGACCAA 59.606 55.000 0.00 0.00 33.10 3.67
155 156 1.002888 CAGCCTGAGACACTGACCAAT 59.997 52.381 0.00 0.00 33.10 3.16
156 157 1.002888 AGCCTGAGACACTGACCAATG 59.997 52.381 0.00 0.00 0.00 2.82
157 158 1.947678 GCCTGAGACACTGACCAATGG 60.948 57.143 0.00 0.00 0.00 3.16
158 159 1.339438 CCTGAGACACTGACCAATGGG 60.339 57.143 3.55 0.00 41.29 4.00
168 169 2.438434 CCAATGGGTCCCAGCGTC 60.438 66.667 17.70 0.00 36.75 5.19
169 170 2.350895 CAATGGGTCCCAGCGTCA 59.649 61.111 17.70 0.00 36.75 4.35
170 171 1.746615 CAATGGGTCCCAGCGTCAG 60.747 63.158 17.70 0.00 36.75 3.51
171 172 2.971598 AATGGGTCCCAGCGTCAGG 61.972 63.158 17.70 0.00 36.75 3.86
172 173 4.954118 TGGGTCCCAGCGTCAGGT 62.954 66.667 6.47 0.00 0.00 4.00
173 174 3.637273 GGGTCCCAGCGTCAGGTT 61.637 66.667 1.78 0.00 0.00 3.50
174 175 2.430367 GGTCCCAGCGTCAGGTTT 59.570 61.111 0.00 0.00 0.00 3.27
175 176 1.966451 GGTCCCAGCGTCAGGTTTG 60.966 63.158 0.00 0.00 0.00 2.93
176 177 1.070786 GTCCCAGCGTCAGGTTTGA 59.929 57.895 0.00 0.00 0.00 2.69
177 178 0.321653 GTCCCAGCGTCAGGTTTGAT 60.322 55.000 0.00 0.00 35.39 2.57
178 179 0.321564 TCCCAGCGTCAGGTTTGATG 60.322 55.000 0.00 0.00 42.18 3.07
179 180 0.321564 CCCAGCGTCAGGTTTGATGA 60.322 55.000 1.14 0.00 41.91 2.92
180 181 1.081892 CCAGCGTCAGGTTTGATGAG 58.918 55.000 1.14 0.00 41.91 2.90
181 182 1.338105 CCAGCGTCAGGTTTGATGAGA 60.338 52.381 1.14 0.00 41.91 3.27
182 183 2.416747 CAGCGTCAGGTTTGATGAGAA 58.583 47.619 1.14 0.00 41.91 2.87
183 184 2.807967 CAGCGTCAGGTTTGATGAGAAA 59.192 45.455 1.14 0.00 41.91 2.52
184 185 3.438087 CAGCGTCAGGTTTGATGAGAAAT 59.562 43.478 1.14 0.00 41.91 2.17
185 186 3.686726 AGCGTCAGGTTTGATGAGAAATC 59.313 43.478 1.14 0.00 41.91 2.17
186 187 3.181506 GCGTCAGGTTTGATGAGAAATCC 60.182 47.826 1.14 0.00 41.91 3.01
187 188 4.002982 CGTCAGGTTTGATGAGAAATCCA 58.997 43.478 0.00 0.00 41.91 3.41
188 189 4.637534 CGTCAGGTTTGATGAGAAATCCAT 59.362 41.667 0.00 0.00 41.91 3.41
189 190 5.124457 CGTCAGGTTTGATGAGAAATCCATT 59.876 40.000 0.00 0.00 41.91 3.16
190 191 6.349611 CGTCAGGTTTGATGAGAAATCCATTT 60.350 38.462 0.00 0.00 41.91 2.32
191 192 7.031975 GTCAGGTTTGATGAGAAATCCATTTC 58.968 38.462 4.14 4.14 39.88 2.17
192 193 7.094032 GTCAGGTTTGATGAGAAATCCATTTCT 60.094 37.037 13.32 13.32 45.52 2.52
208 209 9.638176 AATCCATTTCTACAAGATTGATTAGCT 57.362 29.630 0.00 0.00 0.00 3.32
209 210 8.442632 TCCATTTCTACAAGATTGATTAGCTG 57.557 34.615 0.00 0.00 0.00 4.24
210 211 7.012704 TCCATTTCTACAAGATTGATTAGCTGC 59.987 37.037 0.00 0.00 0.00 5.25
211 212 6.683974 TTTCTACAAGATTGATTAGCTGCC 57.316 37.500 0.00 0.00 0.00 4.85
212 213 4.708177 TCTACAAGATTGATTAGCTGCCC 58.292 43.478 0.00 0.00 0.00 5.36
213 214 3.370840 ACAAGATTGATTAGCTGCCCA 57.629 42.857 0.00 0.00 0.00 5.36
214 215 3.700538 ACAAGATTGATTAGCTGCCCAA 58.299 40.909 0.00 0.00 0.00 4.12
215 216 3.445096 ACAAGATTGATTAGCTGCCCAAC 59.555 43.478 0.00 0.00 0.00 3.77
216 217 3.370840 AGATTGATTAGCTGCCCAACA 57.629 42.857 0.00 0.00 0.00 3.33
217 218 3.907221 AGATTGATTAGCTGCCCAACAT 58.093 40.909 0.00 0.00 0.00 2.71
218 219 3.635373 AGATTGATTAGCTGCCCAACATG 59.365 43.478 0.00 0.00 0.00 3.21
219 220 2.512692 TGATTAGCTGCCCAACATGT 57.487 45.000 0.00 0.00 0.00 3.21
220 221 2.093890 TGATTAGCTGCCCAACATGTG 58.906 47.619 0.00 0.00 0.00 3.21
234 235 4.588899 CAACATGTGGAGAAATAGGTCCA 58.411 43.478 0.00 0.00 40.72 4.02
235 236 5.195940 CAACATGTGGAGAAATAGGTCCAT 58.804 41.667 0.00 0.00 44.71 3.41
236 237 5.041191 ACATGTGGAGAAATAGGTCCATC 57.959 43.478 0.00 0.00 44.71 3.51
237 238 4.723789 ACATGTGGAGAAATAGGTCCATCT 59.276 41.667 0.00 0.00 44.71 2.90
238 239 5.905331 ACATGTGGAGAAATAGGTCCATCTA 59.095 40.000 0.00 0.00 44.71 1.98
239 240 6.386927 ACATGTGGAGAAATAGGTCCATCTAA 59.613 38.462 0.00 0.00 44.71 2.10
240 241 7.072961 ACATGTGGAGAAATAGGTCCATCTAAT 59.927 37.037 0.00 0.00 44.71 1.73
241 242 8.597167 CATGTGGAGAAATAGGTCCATCTAATA 58.403 37.037 0.00 0.00 44.71 0.98
242 243 8.561536 TGTGGAGAAATAGGTCCATCTAATAA 57.438 34.615 0.00 0.00 44.71 1.40
243 244 8.998814 TGTGGAGAAATAGGTCCATCTAATAAA 58.001 33.333 0.00 0.00 44.71 1.40
254 255 9.401058 AGGTCCATCTAATAAATTGTTTGAGAG 57.599 33.333 0.00 0.00 0.00 3.20
255 256 9.396022 GGTCCATCTAATAAATTGTTTGAGAGA 57.604 33.333 0.00 0.00 0.00 3.10
269 270 7.369803 TGTTTGAGAGATTGAGAAATACAGC 57.630 36.000 0.00 0.00 0.00 4.40
270 271 6.372659 TGTTTGAGAGATTGAGAAATACAGCC 59.627 38.462 0.00 0.00 0.00 4.85
271 272 5.682234 TGAGAGATTGAGAAATACAGCCA 57.318 39.130 0.00 0.00 0.00 4.75
272 273 5.668471 TGAGAGATTGAGAAATACAGCCAG 58.332 41.667 0.00 0.00 0.00 4.85
273 274 5.033589 AGAGATTGAGAAATACAGCCAGG 57.966 43.478 0.00 0.00 0.00 4.45
274 275 4.133078 GAGATTGAGAAATACAGCCAGGG 58.867 47.826 0.00 0.00 0.00 4.45
275 276 3.782523 AGATTGAGAAATACAGCCAGGGA 59.217 43.478 0.00 0.00 0.00 4.20
276 277 3.634397 TTGAGAAATACAGCCAGGGAG 57.366 47.619 0.00 0.00 0.00 4.30
277 278 1.839994 TGAGAAATACAGCCAGGGAGG 59.160 52.381 0.00 0.00 41.84 4.30
278 279 2.119495 GAGAAATACAGCCAGGGAGGA 58.881 52.381 0.00 0.00 41.22 3.71
279 280 2.505819 GAGAAATACAGCCAGGGAGGAA 59.494 50.000 0.00 0.00 41.22 3.36
280 281 2.919602 AGAAATACAGCCAGGGAGGAAA 59.080 45.455 0.00 0.00 41.22 3.13
281 282 3.529319 AGAAATACAGCCAGGGAGGAAAT 59.471 43.478 0.00 0.00 41.22 2.17
282 283 3.303351 AATACAGCCAGGGAGGAAATG 57.697 47.619 0.00 0.00 41.22 2.32
283 284 0.255890 TACAGCCAGGGAGGAAATGC 59.744 55.000 0.00 0.00 41.22 3.56
284 285 1.305623 CAGCCAGGGAGGAAATGCT 59.694 57.895 0.00 0.00 41.22 3.79
285 286 0.750911 CAGCCAGGGAGGAAATGCTC 60.751 60.000 0.00 0.00 41.22 4.26
286 287 1.210204 AGCCAGGGAGGAAATGCTCA 61.210 55.000 4.30 0.00 41.22 4.26
287 288 0.106318 GCCAGGGAGGAAATGCTCAT 60.106 55.000 4.30 0.00 41.22 2.90
288 289 1.978454 CCAGGGAGGAAATGCTCATC 58.022 55.000 4.30 0.00 41.22 2.92
289 290 1.213678 CCAGGGAGGAAATGCTCATCA 59.786 52.381 4.30 0.00 41.22 3.07
290 291 2.158505 CCAGGGAGGAAATGCTCATCAT 60.159 50.000 4.30 0.00 41.22 2.45
291 292 3.563223 CAGGGAGGAAATGCTCATCATT 58.437 45.455 4.30 0.00 46.82 2.57
467 476 3.517500 GTGAACTCCTCTCTCAAATCCCT 59.482 47.826 0.00 0.00 0.00 4.20
587 603 3.345808 TTTGCTGCTCGTCGTGGC 61.346 61.111 0.00 6.13 0.00 5.01
638 654 1.452145 GCCAAACTTCGCCAAGGTCA 61.452 55.000 0.00 0.00 33.37 4.02
923 965 3.135712 TCTTCCTGCTTTGTGGTAACTCA 59.864 43.478 0.00 0.00 38.54 3.41
1354 1399 5.367945 ACAAGTTGAAGGGTTTCAGTCTA 57.632 39.130 10.54 0.00 43.76 2.59
1435 1480 6.623767 GCAAGTCAGTAGGATTTTCCATGAAC 60.624 42.308 0.00 0.00 39.61 3.18
2235 2283 1.572415 TCTGGAAGGGATAGGGTACGT 59.428 52.381 0.00 0.00 0.00 3.57
3095 3150 4.886496 TGATGAATGTGCCAAAATTCCA 57.114 36.364 0.38 0.00 32.81 3.53
3212 3267 6.371548 GTCTCTAACTCATTTATTGTGCCACA 59.628 38.462 0.00 0.00 0.00 4.17
3453 3508 3.571401 GCAACAAGGGGGAGAATATCATG 59.429 47.826 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.036858 TTAATTTTTGGCGCCAGGGC 60.037 50.000 30.75 0.37 42.69 5.19
9 10 2.689553 ATTAATTTTTGGCGCCAGGG 57.310 45.000 30.75 0.00 0.00 4.45
10 11 4.754322 ACTAATTAATTTTTGGCGCCAGG 58.246 39.130 30.75 10.75 0.00 4.45
11 12 6.720012 AAACTAATTAATTTTTGGCGCCAG 57.280 33.333 30.75 15.66 0.00 4.85
12 13 8.779354 ATTAAACTAATTAATTTTTGGCGCCA 57.221 26.923 29.03 29.03 40.52 5.69
37 38 9.826574 ACCGATTAGCACTAATCTAAACATAAA 57.173 29.630 21.91 0.00 45.61 1.40
38 39 9.256477 CACCGATTAGCACTAATCTAAACATAA 57.744 33.333 21.91 0.00 45.61 1.90
39 40 8.418662 ACACCGATTAGCACTAATCTAAACATA 58.581 33.333 21.91 0.00 45.61 2.29
40 41 7.224753 CACACCGATTAGCACTAATCTAAACAT 59.775 37.037 21.91 6.11 45.61 2.71
41 42 6.533723 CACACCGATTAGCACTAATCTAAACA 59.466 38.462 21.91 0.00 45.61 2.83
42 43 6.018994 CCACACCGATTAGCACTAATCTAAAC 60.019 42.308 21.91 3.40 45.61 2.01
43 44 6.046593 CCACACCGATTAGCACTAATCTAAA 58.953 40.000 21.91 0.00 45.61 1.85
44 45 5.361571 TCCACACCGATTAGCACTAATCTAA 59.638 40.000 21.91 0.89 45.61 2.10
45 46 4.891168 TCCACACCGATTAGCACTAATCTA 59.109 41.667 21.91 3.27 45.61 1.98
46 47 3.704566 TCCACACCGATTAGCACTAATCT 59.295 43.478 21.91 7.35 45.61 2.40
47 48 3.802685 GTCCACACCGATTAGCACTAATC 59.197 47.826 16.96 16.96 44.80 1.75
48 49 3.431766 GGTCCACACCGATTAGCACTAAT 60.432 47.826 2.56 2.56 34.09 1.73
49 50 2.093869 GGTCCACACCGATTAGCACTAA 60.094 50.000 0.00 0.00 31.06 2.24
50 51 1.479323 GGTCCACACCGATTAGCACTA 59.521 52.381 0.00 0.00 31.06 2.74
51 52 0.249398 GGTCCACACCGATTAGCACT 59.751 55.000 0.00 0.00 31.06 4.40
52 53 0.743345 GGGTCCACACCGATTAGCAC 60.743 60.000 0.00 0.00 44.91 4.40
53 54 1.600107 GGGTCCACACCGATTAGCA 59.400 57.895 0.00 0.00 44.91 3.49
54 55 1.153229 GGGGTCCACACCGATTAGC 60.153 63.158 0.00 0.00 44.91 3.09
55 56 2.292866 TGGGGTCCACACCGATTAG 58.707 57.895 0.00 0.00 44.25 1.73
56 57 4.563166 TGGGGTCCACACCGATTA 57.437 55.556 0.00 0.00 44.25 1.75
65 66 1.990160 AAGCTGAAACGTGGGGTCCA 61.990 55.000 0.00 0.00 0.00 4.02
66 67 0.822121 AAAGCTGAAACGTGGGGTCC 60.822 55.000 0.00 0.00 0.00 4.46
67 68 0.310854 CAAAGCTGAAACGTGGGGTC 59.689 55.000 0.00 0.00 0.00 4.46
68 69 0.106918 TCAAAGCTGAAACGTGGGGT 60.107 50.000 0.00 0.00 0.00 4.95
69 70 0.310854 GTCAAAGCTGAAACGTGGGG 59.689 55.000 0.00 0.00 31.88 4.96
70 71 1.308998 AGTCAAAGCTGAAACGTGGG 58.691 50.000 0.00 0.00 31.88 4.61
71 72 3.560068 ACTAAGTCAAAGCTGAAACGTGG 59.440 43.478 0.00 0.00 31.88 4.94
72 73 4.270084 TGACTAAGTCAAAGCTGAAACGTG 59.730 41.667 0.00 0.00 39.78 4.49
73 74 4.439057 TGACTAAGTCAAAGCTGAAACGT 58.561 39.130 0.00 0.00 39.78 3.99
98 99 0.250553 GTGGGACCGGTCAATGTTGA 60.251 55.000 34.40 7.99 34.20 3.18
99 100 1.241315 GGTGGGACCGGTCAATGTTG 61.241 60.000 34.40 0.00 0.00 3.33
100 101 1.074248 GGTGGGACCGGTCAATGTT 59.926 57.895 34.40 0.00 0.00 2.71
101 102 1.846124 AGGTGGGACCGGTCAATGT 60.846 57.895 34.40 12.97 44.90 2.71
102 103 1.377202 CAGGTGGGACCGGTCAATG 60.377 63.158 34.40 20.18 44.90 2.82
103 104 1.846124 ACAGGTGGGACCGGTCAAT 60.846 57.895 34.40 13.10 43.16 2.57
104 105 2.446994 ACAGGTGGGACCGGTCAA 60.447 61.111 34.40 20.19 43.16 3.18
108 109 0.686441 TCTATGACAGGTGGGACCGG 60.686 60.000 0.00 0.00 44.90 5.28
109 110 0.460311 GTCTATGACAGGTGGGACCG 59.540 60.000 0.00 0.00 44.90 4.79
110 111 0.831307 GGTCTATGACAGGTGGGACC 59.169 60.000 0.00 0.00 38.99 4.46
111 112 0.831307 GGGTCTATGACAGGTGGGAC 59.169 60.000 0.07 0.00 33.68 4.46
112 113 0.415830 TGGGTCTATGACAGGTGGGA 59.584 55.000 0.07 0.00 33.68 4.37
113 114 1.285280 TTGGGTCTATGACAGGTGGG 58.715 55.000 0.07 0.00 33.68 4.61
114 115 2.618045 GGTTTGGGTCTATGACAGGTGG 60.618 54.545 0.07 0.00 33.68 4.61
115 116 2.039746 TGGTTTGGGTCTATGACAGGTG 59.960 50.000 0.07 0.00 33.68 4.00
116 117 2.305927 CTGGTTTGGGTCTATGACAGGT 59.694 50.000 0.07 0.00 33.68 4.00
117 118 2.941415 GCTGGTTTGGGTCTATGACAGG 60.941 54.545 0.07 0.00 33.68 4.00
118 119 2.359900 GCTGGTTTGGGTCTATGACAG 58.640 52.381 0.07 0.00 33.68 3.51
119 120 1.004277 GGCTGGTTTGGGTCTATGACA 59.996 52.381 0.07 0.00 33.68 3.58
120 121 1.282157 AGGCTGGTTTGGGTCTATGAC 59.718 52.381 0.00 0.00 0.00 3.06
121 122 1.281867 CAGGCTGGTTTGGGTCTATGA 59.718 52.381 6.61 0.00 0.00 2.15
122 123 1.281867 TCAGGCTGGTTTGGGTCTATG 59.718 52.381 15.73 0.00 0.00 2.23
123 124 1.561542 CTCAGGCTGGTTTGGGTCTAT 59.438 52.381 15.73 0.00 0.00 1.98
124 125 0.984230 CTCAGGCTGGTTTGGGTCTA 59.016 55.000 15.73 0.00 0.00 2.59
125 126 0.768221 TCTCAGGCTGGTTTGGGTCT 60.768 55.000 15.73 0.00 0.00 3.85
126 127 0.606673 GTCTCAGGCTGGTTTGGGTC 60.607 60.000 15.73 0.00 0.00 4.46
127 128 1.352622 TGTCTCAGGCTGGTTTGGGT 61.353 55.000 15.73 0.00 0.00 4.51
128 129 0.890996 GTGTCTCAGGCTGGTTTGGG 60.891 60.000 15.73 0.00 0.00 4.12
129 130 0.109342 AGTGTCTCAGGCTGGTTTGG 59.891 55.000 15.73 0.70 0.00 3.28
130 131 1.202687 TCAGTGTCTCAGGCTGGTTTG 60.203 52.381 15.73 5.47 0.00 2.93
131 132 1.131638 TCAGTGTCTCAGGCTGGTTT 58.868 50.000 15.73 0.00 0.00 3.27
132 133 0.394565 GTCAGTGTCTCAGGCTGGTT 59.605 55.000 15.73 0.00 0.00 3.67
133 134 1.476007 GGTCAGTGTCTCAGGCTGGT 61.476 60.000 15.73 0.00 0.00 4.00
134 135 1.294780 GGTCAGTGTCTCAGGCTGG 59.705 63.158 15.73 5.63 0.00 4.85
135 136 0.394192 TTGGTCAGTGTCTCAGGCTG 59.606 55.000 8.58 8.58 0.00 4.85
136 137 1.002888 CATTGGTCAGTGTCTCAGGCT 59.997 52.381 0.00 0.00 0.00 4.58
137 138 1.446907 CATTGGTCAGTGTCTCAGGC 58.553 55.000 0.00 0.00 0.00 4.85
138 139 1.339438 CCCATTGGTCAGTGTCTCAGG 60.339 57.143 1.20 0.00 0.00 3.86
139 140 1.349026 ACCCATTGGTCAGTGTCTCAG 59.651 52.381 1.20 0.00 43.06 3.35
140 141 1.434188 ACCCATTGGTCAGTGTCTCA 58.566 50.000 1.20 0.00 43.06 3.27
151 152 2.438434 GACGCTGGGACCCATTGG 60.438 66.667 15.39 8.85 30.82 3.16
152 153 1.746615 CTGACGCTGGGACCCATTG 60.747 63.158 15.39 12.15 30.82 2.82
153 154 2.671070 CTGACGCTGGGACCCATT 59.329 61.111 15.39 0.69 30.82 3.16
154 155 3.402681 CCTGACGCTGGGACCCAT 61.403 66.667 15.39 0.00 30.82 4.00
155 156 4.954118 ACCTGACGCTGGGACCCA 62.954 66.667 14.08 14.08 0.00 4.51
156 157 3.192103 AAACCTGACGCTGGGACCC 62.192 63.158 2.45 2.45 0.00 4.46
157 158 1.966451 CAAACCTGACGCTGGGACC 60.966 63.158 0.00 0.00 0.00 4.46
158 159 0.321653 ATCAAACCTGACGCTGGGAC 60.322 55.000 0.00 0.00 33.30 4.46
159 160 0.321564 CATCAAACCTGACGCTGGGA 60.322 55.000 0.00 0.00 33.30 4.37
160 161 0.321564 TCATCAAACCTGACGCTGGG 60.322 55.000 7.46 0.00 33.30 4.45
161 162 1.081892 CTCATCAAACCTGACGCTGG 58.918 55.000 2.15 2.15 33.30 4.85
162 163 2.084610 TCTCATCAAACCTGACGCTG 57.915 50.000 0.00 0.00 33.30 5.18
163 164 2.839486 TTCTCATCAAACCTGACGCT 57.161 45.000 0.00 0.00 33.30 5.07
164 165 3.181506 GGATTTCTCATCAAACCTGACGC 60.182 47.826 0.00 0.00 33.30 5.19
165 166 4.002982 TGGATTTCTCATCAAACCTGACG 58.997 43.478 0.00 0.00 33.30 4.35
166 167 6.521151 AATGGATTTCTCATCAAACCTGAC 57.479 37.500 0.00 0.00 33.30 3.51
167 168 7.161773 GAAATGGATTTCTCATCAAACCTGA 57.838 36.000 5.07 0.00 42.12 3.86
182 183 9.638176 AGCTAATCAATCTTGTAGAAATGGATT 57.362 29.630 0.00 0.00 0.00 3.01
183 184 9.064706 CAGCTAATCAATCTTGTAGAAATGGAT 57.935 33.333 0.00 0.00 0.00 3.41
184 185 7.012704 GCAGCTAATCAATCTTGTAGAAATGGA 59.987 37.037 0.00 0.00 0.00 3.41
185 186 7.137426 GCAGCTAATCAATCTTGTAGAAATGG 58.863 38.462 0.00 0.00 0.00 3.16
186 187 7.137426 GGCAGCTAATCAATCTTGTAGAAATG 58.863 38.462 0.00 0.00 0.00 2.32
187 188 6.264067 GGGCAGCTAATCAATCTTGTAGAAAT 59.736 38.462 0.00 0.00 0.00 2.17
188 189 5.590259 GGGCAGCTAATCAATCTTGTAGAAA 59.410 40.000 0.00 0.00 0.00 2.52
189 190 5.126067 GGGCAGCTAATCAATCTTGTAGAA 58.874 41.667 0.00 0.00 0.00 2.10
190 191 4.164030 TGGGCAGCTAATCAATCTTGTAGA 59.836 41.667 0.00 0.00 0.00 2.59
191 192 4.454678 TGGGCAGCTAATCAATCTTGTAG 58.545 43.478 0.00 0.00 0.00 2.74
192 193 4.502105 TGGGCAGCTAATCAATCTTGTA 57.498 40.909 0.00 0.00 0.00 2.41
193 194 3.370840 TGGGCAGCTAATCAATCTTGT 57.629 42.857 0.00 0.00 0.00 3.16
194 195 3.444742 TGTTGGGCAGCTAATCAATCTTG 59.555 43.478 0.00 0.00 0.00 3.02
195 196 3.700538 TGTTGGGCAGCTAATCAATCTT 58.299 40.909 0.00 0.00 0.00 2.40
196 197 3.370840 TGTTGGGCAGCTAATCAATCT 57.629 42.857 0.00 0.00 0.00 2.40
197 198 3.382546 ACATGTTGGGCAGCTAATCAATC 59.617 43.478 0.00 0.00 0.00 2.67
198 199 3.131577 CACATGTTGGGCAGCTAATCAAT 59.868 43.478 0.00 0.00 0.00 2.57
199 200 2.492881 CACATGTTGGGCAGCTAATCAA 59.507 45.455 0.00 0.00 0.00 2.57
200 201 2.093890 CACATGTTGGGCAGCTAATCA 58.906 47.619 0.00 0.00 0.00 2.57
201 202 1.406539 CCACATGTTGGGCAGCTAATC 59.593 52.381 0.00 0.00 42.54 1.75
202 203 1.005805 TCCACATGTTGGGCAGCTAAT 59.994 47.619 12.53 0.00 46.92 1.73
203 204 0.403655 TCCACATGTTGGGCAGCTAA 59.596 50.000 12.53 0.00 46.92 3.09
204 205 0.035152 CTCCACATGTTGGGCAGCTA 60.035 55.000 12.53 0.00 46.92 3.32
205 206 1.303888 CTCCACATGTTGGGCAGCT 60.304 57.895 12.53 0.00 46.92 4.24
206 207 0.895100 TTCTCCACATGTTGGGCAGC 60.895 55.000 12.53 0.00 46.92 5.25
207 208 1.619654 TTTCTCCACATGTTGGGCAG 58.380 50.000 12.53 5.87 46.92 4.85
208 209 2.307496 ATTTCTCCACATGTTGGGCA 57.693 45.000 12.53 0.00 46.92 5.36
209 210 2.689983 CCTATTTCTCCACATGTTGGGC 59.310 50.000 12.53 0.00 46.92 5.36
210 211 3.947834 GACCTATTTCTCCACATGTTGGG 59.052 47.826 12.53 5.36 46.92 4.12
212 213 4.588899 TGGACCTATTTCTCCACATGTTG 58.411 43.478 0.00 0.00 31.20 3.33
213 214 4.927267 TGGACCTATTTCTCCACATGTT 57.073 40.909 0.00 0.00 31.20 2.71
214 215 4.723789 AGATGGACCTATTTCTCCACATGT 59.276 41.667 0.00 0.00 39.44 3.21
215 216 5.301835 AGATGGACCTATTTCTCCACATG 57.698 43.478 0.00 0.00 39.44 3.21
216 217 7.639062 ATTAGATGGACCTATTTCTCCACAT 57.361 36.000 0.00 0.00 39.44 3.21
217 218 8.561536 TTATTAGATGGACCTATTTCTCCACA 57.438 34.615 0.00 0.00 39.44 4.17
228 229 9.401058 CTCTCAAACAATTTATTAGATGGACCT 57.599 33.333 0.00 0.00 0.00 3.85
229 230 9.396022 TCTCTCAAACAATTTATTAGATGGACC 57.604 33.333 0.00 0.00 0.00 4.46
243 244 8.457261 GCTGTATTTCTCAATCTCTCAAACAAT 58.543 33.333 0.00 0.00 0.00 2.71
244 245 7.094634 GGCTGTATTTCTCAATCTCTCAAACAA 60.095 37.037 0.00 0.00 0.00 2.83
245 246 6.372659 GGCTGTATTTCTCAATCTCTCAAACA 59.627 38.462 0.00 0.00 0.00 2.83
246 247 6.372659 TGGCTGTATTTCTCAATCTCTCAAAC 59.627 38.462 0.00 0.00 0.00 2.93
247 248 6.475504 TGGCTGTATTTCTCAATCTCTCAAA 58.524 36.000 0.00 0.00 0.00 2.69
248 249 6.053632 TGGCTGTATTTCTCAATCTCTCAA 57.946 37.500 0.00 0.00 0.00 3.02
249 250 5.396101 CCTGGCTGTATTTCTCAATCTCTCA 60.396 44.000 0.00 0.00 0.00 3.27
250 251 5.055812 CCTGGCTGTATTTCTCAATCTCTC 58.944 45.833 0.00 0.00 0.00 3.20
251 252 4.141528 CCCTGGCTGTATTTCTCAATCTCT 60.142 45.833 0.00 0.00 0.00 3.10
252 253 4.133078 CCCTGGCTGTATTTCTCAATCTC 58.867 47.826 0.00 0.00 0.00 2.75
253 254 3.782523 TCCCTGGCTGTATTTCTCAATCT 59.217 43.478 0.00 0.00 0.00 2.40
254 255 4.133078 CTCCCTGGCTGTATTTCTCAATC 58.867 47.826 0.00 0.00 0.00 2.67
255 256 3.117738 CCTCCCTGGCTGTATTTCTCAAT 60.118 47.826 0.00 0.00 0.00 2.57
256 257 2.239654 CCTCCCTGGCTGTATTTCTCAA 59.760 50.000 0.00 0.00 0.00 3.02
257 258 1.839994 CCTCCCTGGCTGTATTTCTCA 59.160 52.381 0.00 0.00 0.00 3.27
258 259 2.119495 TCCTCCCTGGCTGTATTTCTC 58.881 52.381 0.00 0.00 35.26 2.87
259 260 2.270434 TCCTCCCTGGCTGTATTTCT 57.730 50.000 0.00 0.00 35.26 2.52
260 261 3.366052 TTTCCTCCCTGGCTGTATTTC 57.634 47.619 0.00 0.00 35.26 2.17
261 262 3.635591 CATTTCCTCCCTGGCTGTATTT 58.364 45.455 0.00 0.00 35.26 1.40
262 263 2.687914 GCATTTCCTCCCTGGCTGTATT 60.688 50.000 0.00 0.00 35.26 1.89
263 264 1.133668 GCATTTCCTCCCTGGCTGTAT 60.134 52.381 0.00 0.00 35.26 2.29
264 265 0.255890 GCATTTCCTCCCTGGCTGTA 59.744 55.000 0.00 0.00 35.26 2.74
265 266 1.000396 GCATTTCCTCCCTGGCTGT 60.000 57.895 0.00 0.00 35.26 4.40
266 267 0.750911 GAGCATTTCCTCCCTGGCTG 60.751 60.000 0.00 0.00 35.26 4.85
267 268 1.210204 TGAGCATTTCCTCCCTGGCT 61.210 55.000 0.00 0.00 35.26 4.75
268 269 0.106318 ATGAGCATTTCCTCCCTGGC 60.106 55.000 0.00 0.00 35.26 4.85
269 270 1.213678 TGATGAGCATTTCCTCCCTGG 59.786 52.381 0.00 0.00 37.10 4.45
270 271 2.723322 TGATGAGCATTTCCTCCCTG 57.277 50.000 0.00 0.00 0.00 4.45
271 272 3.967467 AATGATGAGCATTTCCTCCCT 57.033 42.857 0.00 0.00 44.68 4.20
280 281 6.433404 ACTCAACAAGAAGAAATGATGAGCAT 59.567 34.615 11.43 0.00 45.20 3.79
281 282 5.766670 ACTCAACAAGAAGAAATGATGAGCA 59.233 36.000 11.43 0.00 45.20 4.26
282 283 6.251655 ACTCAACAAGAAGAAATGATGAGC 57.748 37.500 11.43 0.00 45.20 4.26
283 284 9.823098 CTAAACTCAACAAGAAGAAATGATGAG 57.177 33.333 10.32 10.32 46.13 2.90
284 285 9.342308 ACTAAACTCAACAAGAAGAAATGATGA 57.658 29.630 0.00 0.00 0.00 2.92
285 286 9.390795 CACTAAACTCAACAAGAAGAAATGATG 57.609 33.333 0.00 0.00 0.00 3.07
286 287 8.571336 CCACTAAACTCAACAAGAAGAAATGAT 58.429 33.333 0.00 0.00 0.00 2.45
287 288 7.556275 ACCACTAAACTCAACAAGAAGAAATGA 59.444 33.333 0.00 0.00 0.00 2.57
288 289 7.707104 ACCACTAAACTCAACAAGAAGAAATG 58.293 34.615 0.00 0.00 0.00 2.32
289 290 7.881775 ACCACTAAACTCAACAAGAAGAAAT 57.118 32.000 0.00 0.00 0.00 2.17
290 291 8.795842 TTACCACTAAACTCAACAAGAAGAAA 57.204 30.769 0.00 0.00 0.00 2.52
291 292 8.795842 TTTACCACTAAACTCAACAAGAAGAA 57.204 30.769 0.00 0.00 0.00 2.52
292 293 8.974060 ATTTACCACTAAACTCAACAAGAAGA 57.026 30.769 0.00 0.00 0.00 2.87
294 295 9.796120 CAAATTTACCACTAAACTCAACAAGAA 57.204 29.630 0.00 0.00 0.00 2.52
295 296 8.962679 ACAAATTTACCACTAAACTCAACAAGA 58.037 29.630 0.00 0.00 0.00 3.02
467 476 6.655003 GTGTGAATCAACTAGGGATTTGAGAA 59.345 38.462 11.71 0.00 35.25 2.87
722 760 2.034879 AACATGGAGCGGAACAGCG 61.035 57.895 0.00 0.00 43.00 5.18
923 965 4.835615 ACACAGTTCAATCCTCTCTACACT 59.164 41.667 0.00 0.00 0.00 3.55
1354 1399 0.107456 CTTGTCCACACCTCAGCTGT 59.893 55.000 14.67 0.00 0.00 4.40
1401 1446 4.973168 TCCTACTGACTTGCATCTTGTTT 58.027 39.130 0.00 0.00 0.00 2.83
1435 1480 2.281517 CTCTTGCTTGATCTGCCTCAG 58.718 52.381 8.39 3.54 0.00 3.35
1628 1673 3.245229 TGTGGCTTGTATGAGTTGGGAAT 60.245 43.478 0.00 0.00 0.00 3.01
2235 2283 4.959210 GGAGCTAAGGATCCATCAGCTATA 59.041 45.833 25.89 3.59 46.42 1.31
3095 3150 0.404040 TTTGACCGCTTCTCCCCAAT 59.596 50.000 0.00 0.00 0.00 3.16
3188 3243 6.472016 TGTGGCACAATAAATGAGTTAGAGA 58.528 36.000 19.74 0.00 44.16 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.