Multiple sequence alignment - TraesCS1A01G316000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G316000 chr1A 100.000 2807 0 0 1 2807 508191963 508194769 0.000000e+00 5184
1 TraesCS1A01G316000 chr1A 98.301 942 11 2 1869 2807 235785137 235786076 0.000000e+00 1646
2 TraesCS1A01G316000 chr3A 99.103 1449 12 1 369 1817 688614745 688613298 0.000000e+00 2603
3 TraesCS1A01G316000 chr3A 97.964 1326 25 2 363 1688 264034751 264036074 0.000000e+00 2298
4 TraesCS1A01G316000 chr4A 98.694 1455 17 2 363 1817 44648801 44650253 0.000000e+00 2580
5 TraesCS1A01G316000 chr4A 98.620 1449 19 1 369 1817 44647661 44646214 0.000000e+00 2564
6 TraesCS1A01G316000 chr4A 98.351 1455 23 1 363 1817 44780274 44781727 0.000000e+00 2553
7 TraesCS1A01G316000 chr4A 93.629 361 22 1 1 360 695148847 695148487 3.180000e-149 538
8 TraesCS1A01G316000 chr4A 95.000 320 13 2 374 693 730688948 730688632 1.500000e-137 499
9 TraesCS1A01G316000 chr7A 97.558 942 20 1 1869 2807 105768367 105769308 0.000000e+00 1609
10 TraesCS1A01G316000 chr6A 97.360 947 19 4 1865 2807 386533450 386534394 0.000000e+00 1605
11 TraesCS1A01G316000 chr6A 95.091 876 41 1 942 1817 85350681 85351554 0.000000e+00 1378
12 TraesCS1A01G316000 chr6A 98.387 372 6 0 1 372 225312162 225312533 0.000000e+00 654
13 TraesCS1A01G316000 chr6A 91.689 373 27 3 1 372 169630269 169629900 5.360000e-142 514
14 TraesCS1A01G316000 chr6A 79.216 255 38 12 541 793 31023657 31023898 2.240000e-36 163
15 TraesCS1A01G316000 chr3B 97.360 947 19 4 1865 2807 706003382 706002438 0.000000e+00 1605
16 TraesCS1A01G316000 chr3B 92.800 375 22 4 1 372 762913363 762912991 3.180000e-149 538
17 TraesCS1A01G316000 chr1D 97.167 953 21 4 1860 2807 406956331 406955380 0.000000e+00 1605
18 TraesCS1A01G316000 chr1D 97.450 941 21 1 1870 2807 406964853 406963913 0.000000e+00 1602
19 TraesCS1A01G316000 chr1D 94.527 877 44 3 942 1817 456809087 456809960 0.000000e+00 1351
20 TraesCS1A01G316000 chr1D 96.402 667 20 3 404 1068 202978024 202978688 0.000000e+00 1096
21 TraesCS1A01G316000 chr7B 97.450 941 21 1 1870 2807 125521803 125520863 0.000000e+00 1602
22 TraesCS1A01G316000 chr7B 79.151 259 38 13 541 796 471227873 471227628 6.220000e-37 165
23 TraesCS1A01G316000 chr3D 97.053 950 22 4 1863 2807 340901334 340902282 0.000000e+00 1594
24 TraesCS1A01G316000 chr3D 95.351 882 38 2 936 1817 50894301 50895179 0.000000e+00 1399
25 TraesCS1A01G316000 chr6D 96.957 953 22 5 1860 2807 32707945 32708895 0.000000e+00 1592
26 TraesCS1A01G316000 chr6B 96.750 923 28 1 895 1817 708190446 708191366 0.000000e+00 1537
27 TraesCS1A01G316000 chr6B 94.183 361 20 1 1 360 4682668 4682308 1.470000e-152 549
28 TraesCS1A01G316000 chr6B 95.753 259 10 1 374 631 708190045 708190303 1.560000e-112 416
29 TraesCS1A01G316000 chr2A 97.855 373 7 1 1 372 765062353 765061981 0.000000e+00 643
30 TraesCS1A01G316000 chr2A 91.689 373 24 4 1 372 11531980 11531614 6.940000e-141 510
31 TraesCS1A01G316000 chr5A 92.225 373 27 2 1 372 190044635 190045006 6.890000e-146 527
32 TraesCS1A01G316000 chr7D 91.436 362 26 4 14 372 501789970 501790329 2.510000e-135 492


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G316000 chr1A 508191963 508194769 2806 False 5184.0 5184 100.0000 1 2807 1 chr1A.!!$F2 2806
1 TraesCS1A01G316000 chr1A 235785137 235786076 939 False 1646.0 1646 98.3010 1869 2807 1 chr1A.!!$F1 938
2 TraesCS1A01G316000 chr3A 688613298 688614745 1447 True 2603.0 2603 99.1030 369 1817 1 chr3A.!!$R1 1448
3 TraesCS1A01G316000 chr3A 264034751 264036074 1323 False 2298.0 2298 97.9640 363 1688 1 chr3A.!!$F1 1325
4 TraesCS1A01G316000 chr4A 44648801 44650253 1452 False 2580.0 2580 98.6940 363 1817 1 chr4A.!!$F1 1454
5 TraesCS1A01G316000 chr4A 44646214 44647661 1447 True 2564.0 2564 98.6200 369 1817 1 chr4A.!!$R1 1448
6 TraesCS1A01G316000 chr4A 44780274 44781727 1453 False 2553.0 2553 98.3510 363 1817 1 chr4A.!!$F2 1454
7 TraesCS1A01G316000 chr7A 105768367 105769308 941 False 1609.0 1609 97.5580 1869 2807 1 chr7A.!!$F1 938
8 TraesCS1A01G316000 chr6A 386533450 386534394 944 False 1605.0 1605 97.3600 1865 2807 1 chr6A.!!$F4 942
9 TraesCS1A01G316000 chr6A 85350681 85351554 873 False 1378.0 1378 95.0910 942 1817 1 chr6A.!!$F2 875
10 TraesCS1A01G316000 chr3B 706002438 706003382 944 True 1605.0 1605 97.3600 1865 2807 1 chr3B.!!$R1 942
11 TraesCS1A01G316000 chr1D 406955380 406956331 951 True 1605.0 1605 97.1670 1860 2807 1 chr1D.!!$R1 947
12 TraesCS1A01G316000 chr1D 406963913 406964853 940 True 1602.0 1602 97.4500 1870 2807 1 chr1D.!!$R2 937
13 TraesCS1A01G316000 chr1D 456809087 456809960 873 False 1351.0 1351 94.5270 942 1817 1 chr1D.!!$F2 875
14 TraesCS1A01G316000 chr1D 202978024 202978688 664 False 1096.0 1096 96.4020 404 1068 1 chr1D.!!$F1 664
15 TraesCS1A01G316000 chr7B 125520863 125521803 940 True 1602.0 1602 97.4500 1870 2807 1 chr7B.!!$R1 937
16 TraesCS1A01G316000 chr3D 340901334 340902282 948 False 1594.0 1594 97.0530 1863 2807 1 chr3D.!!$F2 944
17 TraesCS1A01G316000 chr3D 50894301 50895179 878 False 1399.0 1399 95.3510 936 1817 1 chr3D.!!$F1 881
18 TraesCS1A01G316000 chr6D 32707945 32708895 950 False 1592.0 1592 96.9570 1860 2807 1 chr6D.!!$F1 947
19 TraesCS1A01G316000 chr6B 708190045 708191366 1321 False 976.5 1537 96.2515 374 1817 2 chr6B.!!$F1 1443

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.031817 GGGTACTACTGGGGCCTGTA 60.032 60.0 0.84 6.63 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1825 1829 0.037734 CTAGGGTTTCGTTGGGCCTT 59.962 55.0 4.53 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.941483 AGTCAGCCATTAATCTTTGTCCG 59.059 43.478 0.00 0.00 0.00 4.79
23 24 3.689649 GTCAGCCATTAATCTTTGTCCGT 59.310 43.478 0.00 0.00 0.00 4.69
24 25 4.873827 GTCAGCCATTAATCTTTGTCCGTA 59.126 41.667 0.00 0.00 0.00 4.02
25 26 4.873827 TCAGCCATTAATCTTTGTCCGTAC 59.126 41.667 0.00 0.00 0.00 3.67
26 27 4.634004 CAGCCATTAATCTTTGTCCGTACA 59.366 41.667 0.00 0.00 0.00 2.90
27 28 5.123186 CAGCCATTAATCTTTGTCCGTACAA 59.877 40.000 0.00 0.00 43.85 2.41
28 29 5.123344 AGCCATTAATCTTTGTCCGTACAAC 59.877 40.000 0.00 0.00 45.18 3.32
29 30 5.106475 GCCATTAATCTTTGTCCGTACAACA 60.106 40.000 0.00 0.00 45.18 3.33
30 31 6.404293 GCCATTAATCTTTGTCCGTACAACAT 60.404 38.462 0.00 0.00 45.18 2.71
31 32 7.186804 CCATTAATCTTTGTCCGTACAACATC 58.813 38.462 0.00 0.00 45.18 3.06
32 33 7.148323 CCATTAATCTTTGTCCGTACAACATCA 60.148 37.037 0.00 0.00 45.18 3.07
33 34 7.731882 TTAATCTTTGTCCGTACAACATCAA 57.268 32.000 0.00 0.00 45.18 2.57
34 35 5.607119 ATCTTTGTCCGTACAACATCAAC 57.393 39.130 0.00 0.00 45.18 3.18
35 36 4.443621 TCTTTGTCCGTACAACATCAACA 58.556 39.130 0.00 0.00 45.18 3.33
36 37 4.509970 TCTTTGTCCGTACAACATCAACAG 59.490 41.667 0.00 0.00 45.18 3.16
37 38 3.462483 TGTCCGTACAACATCAACAGT 57.538 42.857 0.00 0.00 30.91 3.55
38 39 3.127589 TGTCCGTACAACATCAACAGTG 58.872 45.455 0.00 0.00 30.91 3.66
39 40 3.181474 TGTCCGTACAACATCAACAGTGA 60.181 43.478 0.00 0.00 33.08 3.41
40 41 3.805422 GTCCGTACAACATCAACAGTGAA 59.195 43.478 0.00 0.00 37.30 3.18
41 42 4.271533 GTCCGTACAACATCAACAGTGAAA 59.728 41.667 0.00 0.00 37.30 2.69
42 43 4.271533 TCCGTACAACATCAACAGTGAAAC 59.728 41.667 0.00 0.00 37.30 2.78
84 85 8.138074 TCAATATCTCTACAACATCAGTACTGC 58.862 37.037 18.45 0.00 0.00 4.40
85 86 4.720649 TCTCTACAACATCAGTACTGCC 57.279 45.455 18.45 0.00 0.00 4.85
86 87 3.128764 TCTCTACAACATCAGTACTGCCG 59.871 47.826 18.45 13.18 0.00 5.69
87 88 3.086282 TCTACAACATCAGTACTGCCGA 58.914 45.455 18.45 1.19 0.00 5.54
88 89 2.370281 ACAACATCAGTACTGCCGAG 57.630 50.000 18.45 9.62 0.00 4.63
89 90 1.002366 CAACATCAGTACTGCCGAGC 58.998 55.000 18.45 0.00 0.00 5.03
90 91 0.608130 AACATCAGTACTGCCGAGCA 59.392 50.000 18.45 0.00 36.92 4.26
91 92 0.826715 ACATCAGTACTGCCGAGCAT 59.173 50.000 18.45 2.27 38.13 3.79
92 93 1.215244 CATCAGTACTGCCGAGCATG 58.785 55.000 18.45 11.26 38.13 4.06
93 94 0.826715 ATCAGTACTGCCGAGCATGT 59.173 50.000 18.45 3.51 38.13 3.21
94 95 1.470051 TCAGTACTGCCGAGCATGTA 58.530 50.000 18.45 0.00 38.13 2.29
95 96 2.031870 TCAGTACTGCCGAGCATGTAT 58.968 47.619 18.45 0.00 38.13 2.29
96 97 3.219281 TCAGTACTGCCGAGCATGTATA 58.781 45.455 18.45 0.00 38.13 1.47
97 98 3.826729 TCAGTACTGCCGAGCATGTATAT 59.173 43.478 18.45 0.00 38.13 0.86
98 99 4.280929 TCAGTACTGCCGAGCATGTATATT 59.719 41.667 18.45 0.00 38.13 1.28
99 100 4.991056 CAGTACTGCCGAGCATGTATATTT 59.009 41.667 10.54 0.00 38.13 1.40
100 101 5.466728 CAGTACTGCCGAGCATGTATATTTT 59.533 40.000 10.54 0.00 38.13 1.82
101 102 6.017934 CAGTACTGCCGAGCATGTATATTTTT 60.018 38.462 10.54 0.00 38.13 1.94
102 103 5.424121 ACTGCCGAGCATGTATATTTTTC 57.576 39.130 0.00 0.00 38.13 2.29
103 104 4.275936 ACTGCCGAGCATGTATATTTTTCC 59.724 41.667 0.00 0.00 38.13 3.13
104 105 4.460263 TGCCGAGCATGTATATTTTTCCT 58.540 39.130 0.00 0.00 31.71 3.36
105 106 4.275689 TGCCGAGCATGTATATTTTTCCTG 59.724 41.667 0.00 0.00 31.71 3.86
106 107 4.275936 GCCGAGCATGTATATTTTTCCTGT 59.724 41.667 0.00 0.00 0.00 4.00
107 108 5.468746 GCCGAGCATGTATATTTTTCCTGTA 59.531 40.000 0.00 0.00 0.00 2.74
108 109 6.347725 GCCGAGCATGTATATTTTTCCTGTAG 60.348 42.308 0.00 0.00 0.00 2.74
109 110 6.929049 CCGAGCATGTATATTTTTCCTGTAGA 59.071 38.462 0.00 0.00 0.00 2.59
110 111 7.441157 CCGAGCATGTATATTTTTCCTGTAGAA 59.559 37.037 0.00 0.00 0.00 2.10
111 112 8.826710 CGAGCATGTATATTTTTCCTGTAGAAA 58.173 33.333 0.00 0.00 42.82 2.52
112 113 9.937175 GAGCATGTATATTTTTCCTGTAGAAAC 57.063 33.333 0.00 0.00 44.20 2.78
113 114 8.612619 AGCATGTATATTTTTCCTGTAGAAACG 58.387 33.333 0.00 0.00 44.20 3.60
114 115 8.609176 GCATGTATATTTTTCCTGTAGAAACGA 58.391 33.333 0.00 0.00 44.20 3.85
115 116 9.916397 CATGTATATTTTTCCTGTAGAAACGAC 57.084 33.333 0.00 0.00 44.20 4.34
116 117 9.886132 ATGTATATTTTTCCTGTAGAAACGACT 57.114 29.630 0.00 0.00 44.20 4.18
117 118 9.715121 TGTATATTTTTCCTGTAGAAACGACTT 57.285 29.630 0.00 0.00 44.20 3.01
120 121 7.803279 ATTTTTCCTGTAGAAACGACTTCTT 57.197 32.000 9.27 0.00 44.20 2.52
121 122 6.839820 TTTTCCTGTAGAAACGACTTCTTC 57.160 37.500 9.27 5.97 44.20 2.87
122 123 4.516365 TCCTGTAGAAACGACTTCTTCC 57.484 45.455 9.27 3.38 41.97 3.46
123 124 3.893200 TCCTGTAGAAACGACTTCTTCCA 59.107 43.478 9.27 6.79 41.97 3.53
124 125 4.342951 TCCTGTAGAAACGACTTCTTCCAA 59.657 41.667 9.27 0.00 41.97 3.53
125 126 5.011738 TCCTGTAGAAACGACTTCTTCCAAT 59.988 40.000 9.27 0.00 41.97 3.16
126 127 6.209986 TCCTGTAGAAACGACTTCTTCCAATA 59.790 38.462 9.27 0.00 41.97 1.90
127 128 6.872020 CCTGTAGAAACGACTTCTTCCAATAA 59.128 38.462 9.27 0.00 41.97 1.40
128 129 7.148623 CCTGTAGAAACGACTTCTTCCAATAAC 60.149 40.741 9.27 2.37 41.97 1.89
129 130 7.439381 TGTAGAAACGACTTCTTCCAATAACT 58.561 34.615 9.27 0.00 41.97 2.24
130 131 8.579006 TGTAGAAACGACTTCTTCCAATAACTA 58.421 33.333 9.27 0.00 41.97 2.24
131 132 7.886405 AGAAACGACTTCTTCCAATAACTAC 57.114 36.000 0.00 0.00 41.97 2.73
132 133 7.439381 AGAAACGACTTCTTCCAATAACTACA 58.561 34.615 0.00 0.00 41.97 2.74
133 134 7.929785 AGAAACGACTTCTTCCAATAACTACAA 59.070 33.333 0.00 0.00 41.97 2.41
134 135 8.617290 AAACGACTTCTTCCAATAACTACAAT 57.383 30.769 0.00 0.00 0.00 2.71
135 136 7.829378 ACGACTTCTTCCAATAACTACAATC 57.171 36.000 0.00 0.00 0.00 2.67
136 137 7.612677 ACGACTTCTTCCAATAACTACAATCT 58.387 34.615 0.00 0.00 0.00 2.40
137 138 8.095169 ACGACTTCTTCCAATAACTACAATCTT 58.905 33.333 0.00 0.00 0.00 2.40
138 139 8.383619 CGACTTCTTCCAATAACTACAATCTTG 58.616 37.037 0.00 0.00 0.00 3.02
139 140 8.045176 ACTTCTTCCAATAACTACAATCTTGC 57.955 34.615 0.00 0.00 0.00 4.01
140 141 7.665559 ACTTCTTCCAATAACTACAATCTTGCA 59.334 33.333 0.00 0.00 0.00 4.08
141 142 7.377766 TCTTCCAATAACTACAATCTTGCAC 57.622 36.000 0.00 0.00 0.00 4.57
142 143 7.168219 TCTTCCAATAACTACAATCTTGCACT 58.832 34.615 0.00 0.00 0.00 4.40
143 144 7.665559 TCTTCCAATAACTACAATCTTGCACTT 59.334 33.333 0.00 0.00 0.00 3.16
144 145 7.759489 TCCAATAACTACAATCTTGCACTTT 57.241 32.000 0.00 0.00 0.00 2.66
145 146 8.177119 TCCAATAACTACAATCTTGCACTTTT 57.823 30.769 0.00 0.00 0.00 2.27
146 147 8.296713 TCCAATAACTACAATCTTGCACTTTTC 58.703 33.333 0.00 0.00 0.00 2.29
147 148 8.299570 CCAATAACTACAATCTTGCACTTTTCT 58.700 33.333 0.00 0.00 0.00 2.52
150 151 9.944376 ATAACTACAATCTTGCACTTTTCTAGA 57.056 29.630 0.00 0.00 0.00 2.43
151 152 8.677148 AACTACAATCTTGCACTTTTCTAGAA 57.323 30.769 0.00 0.00 0.00 2.10
152 153 8.677148 ACTACAATCTTGCACTTTTCTAGAAA 57.323 30.769 13.99 13.99 0.00 2.52
153 154 9.120538 ACTACAATCTTGCACTTTTCTAGAAAA 57.879 29.630 25.24 25.24 37.90 2.29
154 155 9.950680 CTACAATCTTGCACTTTTCTAGAAAAA 57.049 29.630 26.37 13.60 39.49 1.94
174 175 8.457261 AGAAAAATAATCTGATCTCTTGTGTGC 58.543 33.333 0.00 0.00 0.00 4.57
175 176 7.692460 AAAATAATCTGATCTCTTGTGTGCA 57.308 32.000 0.00 0.00 0.00 4.57
176 177 6.674694 AATAATCTGATCTCTTGTGTGCAC 57.325 37.500 10.75 10.75 0.00 4.57
177 178 3.690475 ATCTGATCTCTTGTGTGCACA 57.310 42.857 17.42 17.42 39.98 4.57
178 179 3.690475 TCTGATCTCTTGTGTGCACAT 57.310 42.857 24.69 4.37 41.52 3.21
179 180 3.332034 TCTGATCTCTTGTGTGCACATG 58.668 45.455 24.69 16.00 41.52 3.21
180 181 3.072211 CTGATCTCTTGTGTGCACATGT 58.928 45.455 24.69 4.11 41.52 3.21
181 182 3.479489 TGATCTCTTGTGTGCACATGTT 58.521 40.909 24.69 4.00 41.52 2.71
182 183 3.499537 TGATCTCTTGTGTGCACATGTTC 59.500 43.478 24.69 10.68 41.52 3.18
183 184 3.198409 TCTCTTGTGTGCACATGTTCT 57.802 42.857 24.69 0.00 41.52 3.01
184 185 3.133691 TCTCTTGTGTGCACATGTTCTC 58.866 45.455 24.69 9.47 41.52 2.87
185 186 3.136763 CTCTTGTGTGCACATGTTCTCT 58.863 45.455 24.69 0.00 41.52 3.10
186 187 2.874086 TCTTGTGTGCACATGTTCTCTG 59.126 45.455 24.69 7.84 41.52 3.35
187 188 0.946528 TGTGTGCACATGTTCTCTGC 59.053 50.000 24.69 7.10 36.21 4.26
188 189 0.110509 GTGTGCACATGTTCTCTGCG 60.111 55.000 24.69 0.00 33.35 5.18
189 190 0.249826 TGTGCACATGTTCTCTGCGA 60.250 50.000 17.42 0.00 33.35 5.10
190 191 1.081892 GTGCACATGTTCTCTGCGAT 58.918 50.000 13.17 0.00 33.35 4.58
191 192 2.270923 GTGCACATGTTCTCTGCGATA 58.729 47.619 13.17 0.00 33.35 2.92
192 193 2.029728 GTGCACATGTTCTCTGCGATAC 59.970 50.000 13.17 0.00 33.35 2.24
193 194 2.094026 TGCACATGTTCTCTGCGATACT 60.094 45.455 0.00 0.00 33.35 2.12
194 195 3.130340 TGCACATGTTCTCTGCGATACTA 59.870 43.478 0.00 0.00 33.35 1.82
195 196 4.112634 GCACATGTTCTCTGCGATACTAA 58.887 43.478 0.00 0.00 0.00 2.24
196 197 4.747108 GCACATGTTCTCTGCGATACTAAT 59.253 41.667 0.00 0.00 0.00 1.73
197 198 5.920840 GCACATGTTCTCTGCGATACTAATA 59.079 40.000 0.00 0.00 0.00 0.98
198 199 6.129062 GCACATGTTCTCTGCGATACTAATAC 60.129 42.308 0.00 0.00 0.00 1.89
199 200 6.918022 CACATGTTCTCTGCGATACTAATACA 59.082 38.462 0.00 0.00 0.00 2.29
200 201 7.596621 CACATGTTCTCTGCGATACTAATACAT 59.403 37.037 0.00 0.00 0.00 2.29
201 202 7.810282 ACATGTTCTCTGCGATACTAATACATC 59.190 37.037 0.00 0.00 0.00 3.06
202 203 6.678878 TGTTCTCTGCGATACTAATACATCC 58.321 40.000 0.00 0.00 0.00 3.51
203 204 6.264518 TGTTCTCTGCGATACTAATACATCCA 59.735 38.462 0.00 0.00 0.00 3.41
204 205 7.039714 TGTTCTCTGCGATACTAATACATCCAT 60.040 37.037 0.00 0.00 0.00 3.41
205 206 6.856895 TCTCTGCGATACTAATACATCCATG 58.143 40.000 0.00 0.00 0.00 3.66
206 207 6.434340 TCTCTGCGATACTAATACATCCATGT 59.566 38.462 0.00 0.00 44.48 3.21
207 208 6.389906 TCTGCGATACTAATACATCCATGTG 58.610 40.000 2.26 0.00 41.89 3.21
208 209 6.015434 TCTGCGATACTAATACATCCATGTGT 60.015 38.462 2.26 0.00 41.89 3.72
209 210 7.175990 TCTGCGATACTAATACATCCATGTGTA 59.824 37.037 2.26 0.00 41.89 2.90
210 211 7.836842 TGCGATACTAATACATCCATGTGTAT 58.163 34.615 2.26 3.70 44.85 2.29
211 212 7.759433 TGCGATACTAATACATCCATGTGTATG 59.241 37.037 9.13 4.54 42.79 2.39
215 216 7.865530 ACTAATACATCCATGTGTATGGGTA 57.134 36.000 9.13 2.96 46.24 3.69
216 217 7.676947 ACTAATACATCCATGTGTATGGGTAC 58.323 38.462 9.13 0.00 46.24 3.34
217 218 6.763715 AATACATCCATGTGTATGGGTACT 57.236 37.500 9.13 0.00 46.24 2.73
218 219 7.865530 AATACATCCATGTGTATGGGTACTA 57.134 36.000 9.13 0.00 46.24 1.82
219 220 5.546621 ACATCCATGTGTATGGGTACTAC 57.453 43.478 6.48 0.00 46.24 2.73
220 221 5.216622 ACATCCATGTGTATGGGTACTACT 58.783 41.667 6.48 0.00 46.24 2.57
221 222 5.070446 ACATCCATGTGTATGGGTACTACTG 59.930 44.000 6.48 0.00 46.24 2.74
222 223 5.511373 CATCCATGTGTATGGGTACTACTGG 60.511 48.000 6.48 0.00 46.24 4.00
223 224 4.336889 CATGTGTATGGGTACTACTGGG 57.663 50.000 0.00 0.00 0.00 4.45
224 225 2.754465 TGTGTATGGGTACTACTGGGG 58.246 52.381 0.00 0.00 0.00 4.96
225 226 1.415289 GTGTATGGGTACTACTGGGGC 59.585 57.143 0.00 0.00 0.00 5.80
226 227 1.054231 GTATGGGTACTACTGGGGCC 58.946 60.000 0.00 0.00 0.00 5.80
227 228 0.946522 TATGGGTACTACTGGGGCCT 59.053 55.000 0.84 0.00 0.00 5.19
228 229 0.694444 ATGGGTACTACTGGGGCCTG 60.694 60.000 0.84 0.00 0.00 4.85
229 230 1.306739 GGGTACTACTGGGGCCTGT 60.307 63.158 0.84 5.68 0.00 4.00
230 231 0.031817 GGGTACTACTGGGGCCTGTA 60.032 60.000 0.84 6.63 0.00 2.74
231 232 1.411041 GGTACTACTGGGGCCTGTAG 58.589 60.000 24.78 24.78 46.76 2.74
232 233 0.751452 GTACTACTGGGGCCTGTAGC 59.249 60.000 25.68 13.95 45.93 3.58
233 234 0.635009 TACTACTGGGGCCTGTAGCT 59.365 55.000 25.68 18.56 45.93 3.32
234 235 0.688087 ACTACTGGGGCCTGTAGCTC 60.688 60.000 25.68 2.59 45.93 4.09
242 243 3.283259 GGGCCTGTAGCTCACTAATTT 57.717 47.619 0.84 0.00 43.83 1.82
243 244 2.945668 GGGCCTGTAGCTCACTAATTTG 59.054 50.000 0.84 0.00 43.83 2.32
244 245 3.610911 GGCCTGTAGCTCACTAATTTGT 58.389 45.455 0.00 0.00 43.05 2.83
245 246 3.375299 GGCCTGTAGCTCACTAATTTGTG 59.625 47.826 13.06 13.06 43.05 3.33
246 247 3.375299 GCCTGTAGCTCACTAATTTGTGG 59.625 47.826 17.99 10.88 38.40 4.17
247 248 4.579869 CCTGTAGCTCACTAATTTGTGGT 58.420 43.478 17.99 4.96 38.40 4.16
248 249 5.003804 CCTGTAGCTCACTAATTTGTGGTT 58.996 41.667 17.99 10.34 38.40 3.67
249 250 5.122396 CCTGTAGCTCACTAATTTGTGGTTC 59.878 44.000 17.99 8.85 38.40 3.62
250 251 5.001232 TGTAGCTCACTAATTTGTGGTTCC 58.999 41.667 17.99 6.23 38.40 3.62
251 252 3.421844 AGCTCACTAATTTGTGGTTCCC 58.578 45.455 17.99 4.80 38.40 3.97
252 253 3.074538 AGCTCACTAATTTGTGGTTCCCT 59.925 43.478 17.99 6.60 38.40 4.20
253 254 3.191371 GCTCACTAATTTGTGGTTCCCTG 59.809 47.826 17.99 4.04 38.40 4.45
254 255 4.398319 CTCACTAATTTGTGGTTCCCTGT 58.602 43.478 17.99 0.00 38.40 4.00
255 256 5.556915 CTCACTAATTTGTGGTTCCCTGTA 58.443 41.667 17.99 0.00 38.40 2.74
256 257 5.942961 TCACTAATTTGTGGTTCCCTGTAA 58.057 37.500 17.99 0.00 38.40 2.41
257 258 6.548321 TCACTAATTTGTGGTTCCCTGTAAT 58.452 36.000 17.99 0.00 38.40 1.89
258 259 7.007723 TCACTAATTTGTGGTTCCCTGTAATT 58.992 34.615 17.99 0.00 38.40 1.40
259 260 8.164733 TCACTAATTTGTGGTTCCCTGTAATTA 58.835 33.333 17.99 0.00 38.40 1.40
260 261 8.966868 CACTAATTTGTGGTTCCCTGTAATTAT 58.033 33.333 11.63 0.00 34.56 1.28
261 262 9.541884 ACTAATTTGTGGTTCCCTGTAATTATT 57.458 29.630 0.00 0.00 0.00 1.40
265 266 7.706100 TTGTGGTTCCCTGTAATTATTTACC 57.294 36.000 5.33 0.00 37.49 2.85
266 267 7.034967 TGTGGTTCCCTGTAATTATTTACCT 57.965 36.000 5.33 0.00 37.49 3.08
267 268 7.114095 TGTGGTTCCCTGTAATTATTTACCTC 58.886 38.462 5.33 0.00 37.49 3.85
268 269 7.037153 TGTGGTTCCCTGTAATTATTTACCTCT 60.037 37.037 5.33 0.00 37.49 3.69
269 270 7.282450 GTGGTTCCCTGTAATTATTTACCTCTG 59.718 40.741 5.33 0.00 37.49 3.35
270 271 6.262496 GGTTCCCTGTAATTATTTACCTCTGC 59.738 42.308 5.33 0.00 37.49 4.26
271 272 6.824958 TCCCTGTAATTATTTACCTCTGCT 57.175 37.500 5.33 0.00 37.49 4.24
272 273 7.924358 TCCCTGTAATTATTTACCTCTGCTA 57.076 36.000 5.33 0.00 37.49 3.49
273 274 8.506196 TCCCTGTAATTATTTACCTCTGCTAT 57.494 34.615 5.33 0.00 37.49 2.97
274 275 8.594550 TCCCTGTAATTATTTACCTCTGCTATC 58.405 37.037 5.33 0.00 37.49 2.08
275 276 8.375506 CCCTGTAATTATTTACCTCTGCTATCA 58.624 37.037 5.33 0.00 37.49 2.15
276 277 9.950496 CCTGTAATTATTTACCTCTGCTATCAT 57.050 33.333 5.33 0.00 37.49 2.45
278 279 9.219603 TGTAATTATTTACCTCTGCTATCATGC 57.780 33.333 5.33 0.00 37.49 4.06
279 280 9.442047 GTAATTATTTACCTCTGCTATCATGCT 57.558 33.333 0.00 0.00 33.05 3.79
280 281 7.918536 ATTATTTACCTCTGCTATCATGCTG 57.081 36.000 0.00 0.00 0.00 4.41
281 282 3.758755 TTACCTCTGCTATCATGCTGG 57.241 47.619 0.00 0.00 33.58 4.85
282 283 1.504912 ACCTCTGCTATCATGCTGGT 58.495 50.000 0.00 0.00 33.58 4.00
283 284 1.842562 ACCTCTGCTATCATGCTGGTT 59.157 47.619 0.00 0.00 31.83 3.67
284 285 2.240667 ACCTCTGCTATCATGCTGGTTT 59.759 45.455 0.00 0.00 31.83 3.27
285 286 2.877168 CCTCTGCTATCATGCTGGTTTC 59.123 50.000 0.00 0.00 33.58 2.78
286 287 2.543012 CTCTGCTATCATGCTGGTTTCG 59.457 50.000 0.00 0.00 33.58 3.46
287 288 1.600957 CTGCTATCATGCTGGTTTCGG 59.399 52.381 0.00 0.00 0.00 4.30
288 289 0.308993 GCTATCATGCTGGTTTCGGC 59.691 55.000 0.00 0.00 45.23 5.54
289 290 1.959042 CTATCATGCTGGTTTCGGCT 58.041 50.000 0.00 0.00 45.25 5.52
290 291 2.806745 GCTATCATGCTGGTTTCGGCTA 60.807 50.000 0.00 0.00 45.25 3.93
291 292 2.645838 ATCATGCTGGTTTCGGCTAT 57.354 45.000 0.00 0.00 45.25 2.97
292 293 1.667236 TCATGCTGGTTTCGGCTATG 58.333 50.000 0.00 0.00 45.25 2.23
293 294 1.065491 TCATGCTGGTTTCGGCTATGT 60.065 47.619 0.00 0.00 45.25 2.29
294 295 2.169561 TCATGCTGGTTTCGGCTATGTA 59.830 45.455 0.00 0.00 45.25 2.29
295 296 2.309528 TGCTGGTTTCGGCTATGTAG 57.690 50.000 0.00 0.00 45.25 2.74
296 297 1.553248 TGCTGGTTTCGGCTATGTAGT 59.447 47.619 0.00 0.00 45.25 2.73
297 298 2.761767 TGCTGGTTTCGGCTATGTAGTA 59.238 45.455 0.00 0.00 45.25 1.82
298 299 3.196039 TGCTGGTTTCGGCTATGTAGTAA 59.804 43.478 0.00 0.00 45.25 2.24
299 300 3.802685 GCTGGTTTCGGCTATGTAGTAAG 59.197 47.826 0.00 0.00 41.88 2.34
300 301 4.369182 CTGGTTTCGGCTATGTAGTAAGG 58.631 47.826 0.00 0.00 0.00 2.69
301 302 3.770933 TGGTTTCGGCTATGTAGTAAGGT 59.229 43.478 0.00 0.00 0.00 3.50
302 303 4.142093 TGGTTTCGGCTATGTAGTAAGGTC 60.142 45.833 0.00 0.00 0.00 3.85
303 304 4.366586 GTTTCGGCTATGTAGTAAGGTCC 58.633 47.826 0.00 0.00 0.00 4.46
304 305 3.589951 TCGGCTATGTAGTAAGGTCCT 57.410 47.619 0.00 0.00 0.00 3.85
305 306 3.484407 TCGGCTATGTAGTAAGGTCCTC 58.516 50.000 0.00 0.00 0.00 3.71
306 307 2.225963 CGGCTATGTAGTAAGGTCCTCG 59.774 54.545 0.00 0.00 0.00 4.63
307 308 3.484407 GGCTATGTAGTAAGGTCCTCGA 58.516 50.000 0.00 0.00 0.00 4.04
308 309 3.252944 GGCTATGTAGTAAGGTCCTCGAC 59.747 52.174 0.00 0.00 0.00 4.20
309 310 3.881688 GCTATGTAGTAAGGTCCTCGACA 59.118 47.826 0.00 0.00 33.68 4.35
310 311 4.519730 GCTATGTAGTAAGGTCCTCGACAT 59.480 45.833 10.07 10.07 33.68 3.06
311 312 5.704515 GCTATGTAGTAAGGTCCTCGACATA 59.295 44.000 10.95 10.95 33.68 2.29
312 313 6.374894 GCTATGTAGTAAGGTCCTCGACATAT 59.625 42.308 11.53 4.53 32.52 1.78
313 314 7.551974 GCTATGTAGTAAGGTCCTCGACATATA 59.448 40.741 11.53 5.17 32.52 0.86
314 315 7.684937 ATGTAGTAAGGTCCTCGACATATAC 57.315 40.000 4.97 0.00 33.68 1.47
315 316 6.835174 TGTAGTAAGGTCCTCGACATATACT 58.165 40.000 0.00 0.00 33.68 2.12
316 317 7.285566 TGTAGTAAGGTCCTCGACATATACTT 58.714 38.462 3.12 0.00 33.68 2.24
317 318 6.880942 AGTAAGGTCCTCGACATATACTTC 57.119 41.667 0.00 0.00 33.68 3.01
318 319 6.603224 AGTAAGGTCCTCGACATATACTTCT 58.397 40.000 0.00 0.00 33.68 2.85
319 320 6.711645 AGTAAGGTCCTCGACATATACTTCTC 59.288 42.308 0.00 0.00 33.68 2.87
320 321 4.066490 AGGTCCTCGACATATACTTCTCG 58.934 47.826 0.00 0.00 33.68 4.04
321 322 3.814283 GGTCCTCGACATATACTTCTCGT 59.186 47.826 0.00 0.00 33.68 4.18
322 323 4.275443 GGTCCTCGACATATACTTCTCGTT 59.725 45.833 0.00 0.00 33.68 3.85
323 324 5.442402 GTCCTCGACATATACTTCTCGTTC 58.558 45.833 0.00 0.00 32.09 3.95
324 325 5.007430 GTCCTCGACATATACTTCTCGTTCA 59.993 44.000 0.00 0.00 32.09 3.18
325 326 5.587443 TCCTCGACATATACTTCTCGTTCAA 59.413 40.000 0.00 0.00 0.00 2.69
326 327 6.094464 TCCTCGACATATACTTCTCGTTCAAA 59.906 38.462 0.00 0.00 0.00 2.69
327 328 6.415280 CCTCGACATATACTTCTCGTTCAAAG 59.585 42.308 0.00 0.00 0.00 2.77
328 329 7.080353 TCGACATATACTTCTCGTTCAAAGA 57.920 36.000 0.00 0.00 0.00 2.52
329 330 7.532571 TCGACATATACTTCTCGTTCAAAGAA 58.467 34.615 0.00 0.00 0.00 2.52
330 331 8.188799 TCGACATATACTTCTCGTTCAAAGAAT 58.811 33.333 0.00 0.00 32.56 2.40
331 332 8.808529 CGACATATACTTCTCGTTCAAAGAATT 58.191 33.333 0.00 0.00 32.56 2.17
335 336 9.817809 ATATACTTCTCGTTCAAAGAATTAGCA 57.182 29.630 0.00 0.00 32.56 3.49
336 337 6.229561 ACTTCTCGTTCAAAGAATTAGCAC 57.770 37.500 0.00 0.00 32.56 4.40
337 338 5.992217 ACTTCTCGTTCAAAGAATTAGCACT 59.008 36.000 0.00 0.00 32.56 4.40
338 339 6.483640 ACTTCTCGTTCAAAGAATTAGCACTT 59.516 34.615 0.00 0.00 32.56 3.16
339 340 6.467723 TCTCGTTCAAAGAATTAGCACTTC 57.532 37.500 0.00 0.00 0.00 3.01
340 341 5.989168 TCTCGTTCAAAGAATTAGCACTTCA 59.011 36.000 0.00 0.00 0.00 3.02
341 342 6.481976 TCTCGTTCAAAGAATTAGCACTTCAA 59.518 34.615 0.00 0.00 0.00 2.69
342 343 7.173218 TCTCGTTCAAAGAATTAGCACTTCAAT 59.827 33.333 0.00 0.00 0.00 2.57
343 344 7.648142 TCGTTCAAAGAATTAGCACTTCAATT 58.352 30.769 0.00 0.00 0.00 2.32
344 345 8.134895 TCGTTCAAAGAATTAGCACTTCAATTT 58.865 29.630 0.00 0.00 0.00 1.82
345 346 8.755018 CGTTCAAAGAATTAGCACTTCAATTTT 58.245 29.630 0.00 0.00 0.00 1.82
366 367 6.561737 TTTTTGTTCGCCTACATAACATCA 57.438 33.333 0.00 0.00 33.44 3.07
367 368 5.794687 TTTGTTCGCCTACATAACATCAG 57.205 39.130 0.00 0.00 33.44 2.90
592 595 1.075212 TGTCTTGGATTGGCACATCCA 59.925 47.619 20.39 20.39 44.85 3.41
1054 1057 3.686916 AAAGAAGAAAGAGGAGACGGG 57.313 47.619 0.00 0.00 0.00 5.28
1087 1090 6.262601 ACCAAACTGTACTTTGAATCGTTTG 58.737 36.000 8.70 0.00 39.36 2.93
1330 1334 1.515521 CGTGGAGGAAAAGGTGGCAC 61.516 60.000 9.70 9.70 0.00 5.01
1351 1355 3.214328 CTGTTCTTGTTGGTAGTTGGCT 58.786 45.455 0.00 0.00 0.00 4.75
1409 1413 5.012148 ACAAGCGCTCCTTATGGACTATTAT 59.988 40.000 12.06 0.00 37.46 1.28
1743 1747 0.390209 GCCGCCAAGATGCATTTGTT 60.390 50.000 0.00 0.00 0.00 2.83
1811 1815 9.988815 CCTCTGTATAATTGTTAGCTAACTCAT 57.011 33.333 31.14 21.78 37.12 2.90
1822 1826 4.301072 AGCTAACTCATTTGCTAACCCA 57.699 40.909 0.00 0.00 43.81 4.51
1823 1827 4.265073 AGCTAACTCATTTGCTAACCCAG 58.735 43.478 0.00 0.00 43.81 4.45
1824 1828 4.010349 GCTAACTCATTTGCTAACCCAGT 58.990 43.478 0.00 0.00 34.22 4.00
1825 1829 5.045869 AGCTAACTCATTTGCTAACCCAGTA 60.046 40.000 0.00 0.00 43.81 2.74
1826 1830 5.646360 GCTAACTCATTTGCTAACCCAGTAA 59.354 40.000 0.00 0.00 34.22 2.24
1827 1831 6.183360 GCTAACTCATTTGCTAACCCAGTAAG 60.183 42.308 0.00 0.00 34.22 2.34
1828 1832 4.589908 ACTCATTTGCTAACCCAGTAAGG 58.410 43.478 0.00 0.00 29.93 2.69
1829 1833 3.352648 TCATTTGCTAACCCAGTAAGGC 58.647 45.455 0.00 0.00 35.39 4.35
1830 1834 2.209690 TTTGCTAACCCAGTAAGGCC 57.790 50.000 0.00 0.00 35.39 5.19
1831 1835 0.330267 TTGCTAACCCAGTAAGGCCC 59.670 55.000 0.00 0.00 35.39 5.80
1832 1836 0.842905 TGCTAACCCAGTAAGGCCCA 60.843 55.000 0.00 0.00 35.39 5.36
1833 1837 0.330267 GCTAACCCAGTAAGGCCCAA 59.670 55.000 0.00 0.00 35.39 4.12
1834 1838 1.953785 GCTAACCCAGTAAGGCCCAAC 60.954 57.143 0.00 0.00 35.39 3.77
1835 1839 0.325602 TAACCCAGTAAGGCCCAACG 59.674 55.000 0.00 0.00 35.39 4.10
1836 1840 1.420532 AACCCAGTAAGGCCCAACGA 61.421 55.000 0.00 0.00 35.39 3.85
1837 1841 1.377229 CCCAGTAAGGCCCAACGAA 59.623 57.895 0.00 0.00 35.39 3.85
1838 1842 0.250989 CCCAGTAAGGCCCAACGAAA 60.251 55.000 0.00 0.00 35.39 3.46
1839 1843 0.879090 CCAGTAAGGCCCAACGAAAC 59.121 55.000 0.00 0.00 0.00 2.78
1840 1844 0.879090 CAGTAAGGCCCAACGAAACC 59.121 55.000 0.00 0.00 0.00 3.27
1841 1845 0.251033 AGTAAGGCCCAACGAAACCC 60.251 55.000 0.00 0.00 0.00 4.11
1842 1846 0.251033 GTAAGGCCCAACGAAACCCT 60.251 55.000 0.00 0.00 0.00 4.34
1843 1847 1.003464 GTAAGGCCCAACGAAACCCTA 59.997 52.381 0.00 0.00 0.00 3.53
1844 1848 0.037734 AAGGCCCAACGAAACCCTAG 59.962 55.000 0.00 0.00 0.00 3.02
1845 1849 2.044555 GGCCCAACGAAACCCTAGC 61.045 63.158 0.00 0.00 0.00 3.42
1846 1850 2.396157 GCCCAACGAAACCCTAGCG 61.396 63.158 0.00 0.00 0.00 4.26
1847 1851 1.004200 CCCAACGAAACCCTAGCGT 60.004 57.895 0.00 0.00 40.35 5.07
1848 1852 1.296056 CCCAACGAAACCCTAGCGTG 61.296 60.000 0.00 0.00 38.39 5.34
1849 1853 1.495951 CAACGAAACCCTAGCGTGC 59.504 57.895 0.00 0.00 38.39 5.34
1850 1854 1.670083 AACGAAACCCTAGCGTGCC 60.670 57.895 0.00 0.00 38.39 5.01
1851 1855 2.108278 AACGAAACCCTAGCGTGCCT 62.108 55.000 0.00 0.00 38.39 4.75
1852 1856 2.100631 CGAAACCCTAGCGTGCCTG 61.101 63.158 0.00 0.00 0.00 4.85
1853 1857 1.745489 GAAACCCTAGCGTGCCTGG 60.745 63.158 0.00 0.00 0.00 4.45
1854 1858 3.920093 AAACCCTAGCGTGCCTGGC 62.920 63.158 12.87 12.87 0.00 4.85
1856 1860 4.537433 CCCTAGCGTGCCTGGCTC 62.537 72.222 21.03 15.65 41.80 4.70
1857 1861 3.774528 CCTAGCGTGCCTGGCTCA 61.775 66.667 21.03 0.00 41.80 4.26
1858 1862 2.265739 CTAGCGTGCCTGGCTCAA 59.734 61.111 21.03 3.93 41.80 3.02
1859 1863 1.153289 CTAGCGTGCCTGGCTCAAT 60.153 57.895 21.03 9.81 41.80 2.57
1860 1864 1.153369 TAGCGTGCCTGGCTCAATC 60.153 57.895 21.03 8.21 41.80 2.67
1861 1865 1.617018 TAGCGTGCCTGGCTCAATCT 61.617 55.000 21.03 14.58 41.80 2.40
1862 1866 2.758089 GCGTGCCTGGCTCAATCTG 61.758 63.158 21.03 4.31 0.00 2.90
1863 1867 1.078918 CGTGCCTGGCTCAATCTGA 60.079 57.895 21.03 0.00 0.00 3.27
1864 1868 0.674581 CGTGCCTGGCTCAATCTGAA 60.675 55.000 21.03 0.00 0.00 3.02
1865 1869 0.807496 GTGCCTGGCTCAATCTGAAC 59.193 55.000 21.03 2.01 0.00 3.18
1866 1870 0.322816 TGCCTGGCTCAATCTGAACC 60.323 55.000 21.03 0.00 33.35 3.62
1867 1871 0.322816 GCCTGGCTCAATCTGAACCA 60.323 55.000 12.43 0.00 40.06 3.67
2119 2123 4.301072 AAGTGCATAAGTAAAGGGCTCA 57.699 40.909 0.00 0.00 0.00 4.26
2441 2445 2.308866 CCACAACCTAATTGGAGACCCT 59.691 50.000 0.00 0.00 43.20 4.34
2664 2671 4.224818 CCAAGTCCTTCTCTCTCAAATCCT 59.775 45.833 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.941483 CGGACAAAGATTAATGGCTGACT 59.059 43.478 0.00 0.00 32.35 3.41
1 2 3.689649 ACGGACAAAGATTAATGGCTGAC 59.310 43.478 0.00 0.00 34.42 3.51
5 6 5.106475 TGTTGTACGGACAAAGATTAATGGC 60.106 40.000 16.41 0.00 46.99 4.40
6 7 6.489127 TGTTGTACGGACAAAGATTAATGG 57.511 37.500 16.41 0.00 46.99 3.16
8 9 7.915293 TGATGTTGTACGGACAAAGATTAAT 57.085 32.000 16.41 2.44 46.99 1.40
10 11 6.706716 TGTTGATGTTGTACGGACAAAGATTA 59.293 34.615 16.41 4.50 46.99 1.75
11 12 5.529430 TGTTGATGTTGTACGGACAAAGATT 59.471 36.000 16.41 0.00 46.99 2.40
12 13 5.060506 TGTTGATGTTGTACGGACAAAGAT 58.939 37.500 16.41 10.41 46.99 2.40
14 15 4.272504 ACTGTTGATGTTGTACGGACAAAG 59.727 41.667 16.41 9.66 46.99 2.77
15 16 4.034626 CACTGTTGATGTTGTACGGACAAA 59.965 41.667 16.41 6.31 46.99 2.83
16 17 3.558006 CACTGTTGATGTTGTACGGACAA 59.442 43.478 9.75 9.75 43.41 3.18
17 18 3.127589 CACTGTTGATGTTGTACGGACA 58.872 45.455 0.00 0.00 0.00 4.02
18 19 3.386486 TCACTGTTGATGTTGTACGGAC 58.614 45.455 0.00 0.00 0.00 4.79
19 20 3.737032 TCACTGTTGATGTTGTACGGA 57.263 42.857 0.00 0.00 0.00 4.69
20 21 4.272504 AGTTTCACTGTTGATGTTGTACGG 59.727 41.667 0.00 0.00 0.00 4.02
21 22 5.403897 AGTTTCACTGTTGATGTTGTACG 57.596 39.130 0.00 0.00 0.00 3.67
22 23 9.730420 ATAAAAGTTTCACTGTTGATGTTGTAC 57.270 29.630 0.00 0.00 26.94 2.90
58 59 8.138074 GCAGTACTGATGTTGTAGAGATATTGA 58.862 37.037 27.08 0.00 0.00 2.57
59 60 7.383572 GGCAGTACTGATGTTGTAGAGATATTG 59.616 40.741 27.08 0.00 0.00 1.90
60 61 7.437748 GGCAGTACTGATGTTGTAGAGATATT 58.562 38.462 27.08 0.00 0.00 1.28
61 62 6.294231 CGGCAGTACTGATGTTGTAGAGATAT 60.294 42.308 27.08 0.00 0.00 1.63
62 63 5.008712 CGGCAGTACTGATGTTGTAGAGATA 59.991 44.000 27.08 0.00 0.00 1.98
63 64 4.202060 CGGCAGTACTGATGTTGTAGAGAT 60.202 45.833 27.08 0.00 0.00 2.75
64 65 3.128764 CGGCAGTACTGATGTTGTAGAGA 59.871 47.826 27.08 0.00 0.00 3.10
65 66 3.128764 TCGGCAGTACTGATGTTGTAGAG 59.871 47.826 27.08 4.48 0.00 2.43
66 67 3.086282 TCGGCAGTACTGATGTTGTAGA 58.914 45.455 27.08 9.44 0.00 2.59
67 68 3.439293 CTCGGCAGTACTGATGTTGTAG 58.561 50.000 27.08 8.84 31.63 2.74
68 69 2.416836 GCTCGGCAGTACTGATGTTGTA 60.417 50.000 27.08 3.07 31.63 2.41
69 70 1.673033 GCTCGGCAGTACTGATGTTGT 60.673 52.381 27.08 0.00 31.63 3.32
70 71 1.002366 GCTCGGCAGTACTGATGTTG 58.998 55.000 27.08 12.05 31.63 3.33
71 72 0.608130 TGCTCGGCAGTACTGATGTT 59.392 50.000 27.08 0.00 33.32 2.71
72 73 0.826715 ATGCTCGGCAGTACTGATGT 59.173 50.000 27.08 1.62 43.65 3.06
73 74 1.215244 CATGCTCGGCAGTACTGATG 58.785 55.000 27.08 16.68 43.65 3.07
74 75 0.826715 ACATGCTCGGCAGTACTGAT 59.173 50.000 27.08 6.86 43.65 2.90
75 76 1.470051 TACATGCTCGGCAGTACTGA 58.530 50.000 27.08 4.49 43.65 3.41
76 77 2.515926 ATACATGCTCGGCAGTACTG 57.484 50.000 18.93 18.93 43.65 2.74
77 78 4.873746 AATATACATGCTCGGCAGTACT 57.126 40.909 4.90 0.00 43.65 2.73
78 79 5.924475 AAAATATACATGCTCGGCAGTAC 57.076 39.130 4.90 0.00 43.65 2.73
79 80 5.468746 GGAAAAATATACATGCTCGGCAGTA 59.531 40.000 4.90 7.38 43.65 2.74
80 81 4.275936 GGAAAAATATACATGCTCGGCAGT 59.724 41.667 4.90 5.76 43.65 4.40
81 82 4.516698 AGGAAAAATATACATGCTCGGCAG 59.483 41.667 4.90 0.00 43.65 4.85
82 83 4.275689 CAGGAAAAATATACATGCTCGGCA 59.724 41.667 1.01 1.01 44.86 5.69
83 84 4.275936 ACAGGAAAAATATACATGCTCGGC 59.724 41.667 0.00 0.00 0.00 5.54
84 85 6.929049 TCTACAGGAAAAATATACATGCTCGG 59.071 38.462 0.00 0.00 0.00 4.63
85 86 7.946655 TCTACAGGAAAAATATACATGCTCG 57.053 36.000 0.00 0.00 0.00 5.03
86 87 9.937175 GTTTCTACAGGAAAAATATACATGCTC 57.063 33.333 0.00 0.00 44.34 4.26
87 88 8.612619 CGTTTCTACAGGAAAAATATACATGCT 58.387 33.333 0.00 0.00 44.34 3.79
88 89 8.609176 TCGTTTCTACAGGAAAAATATACATGC 58.391 33.333 0.00 0.00 44.34 4.06
89 90 9.916397 GTCGTTTCTACAGGAAAAATATACATG 57.084 33.333 0.00 0.00 44.34 3.21
90 91 9.886132 AGTCGTTTCTACAGGAAAAATATACAT 57.114 29.630 0.00 0.00 44.34 2.29
91 92 9.715121 AAGTCGTTTCTACAGGAAAAATATACA 57.285 29.630 0.00 0.00 44.34 2.29
94 95 9.503399 AAGAAGTCGTTTCTACAGGAAAAATAT 57.497 29.630 5.59 0.00 45.41 1.28
95 96 8.897872 AAGAAGTCGTTTCTACAGGAAAAATA 57.102 30.769 5.59 0.00 45.41 1.40
96 97 7.041303 GGAAGAAGTCGTTTCTACAGGAAAAAT 60.041 37.037 5.59 0.00 45.41 1.82
97 98 6.259387 GGAAGAAGTCGTTTCTACAGGAAAAA 59.741 38.462 5.59 0.00 45.41 1.94
98 99 5.756833 GGAAGAAGTCGTTTCTACAGGAAAA 59.243 40.000 5.59 0.00 45.41 2.29
99 100 5.163385 TGGAAGAAGTCGTTTCTACAGGAAA 60.163 40.000 5.59 0.00 45.41 3.13
100 101 4.342951 TGGAAGAAGTCGTTTCTACAGGAA 59.657 41.667 5.59 0.00 45.41 3.36
101 102 3.893200 TGGAAGAAGTCGTTTCTACAGGA 59.107 43.478 5.59 0.00 45.41 3.86
102 103 4.252971 TGGAAGAAGTCGTTTCTACAGG 57.747 45.455 5.59 0.00 45.41 4.00
103 104 7.599245 AGTTATTGGAAGAAGTCGTTTCTACAG 59.401 37.037 5.59 0.00 45.41 2.74
104 105 7.439381 AGTTATTGGAAGAAGTCGTTTCTACA 58.561 34.615 5.59 5.83 45.41 2.74
105 106 7.886405 AGTTATTGGAAGAAGTCGTTTCTAC 57.114 36.000 5.59 3.85 45.41 2.59
106 107 8.579006 TGTAGTTATTGGAAGAAGTCGTTTCTA 58.421 33.333 5.59 0.00 45.41 2.10
108 109 7.647907 TGTAGTTATTGGAAGAAGTCGTTTC 57.352 36.000 0.00 0.00 35.97 2.78
109 110 8.617290 ATTGTAGTTATTGGAAGAAGTCGTTT 57.383 30.769 0.00 0.00 0.00 3.60
110 111 8.095169 AGATTGTAGTTATTGGAAGAAGTCGTT 58.905 33.333 0.00 0.00 0.00 3.85
111 112 7.612677 AGATTGTAGTTATTGGAAGAAGTCGT 58.387 34.615 0.00 0.00 0.00 4.34
112 113 8.383619 CAAGATTGTAGTTATTGGAAGAAGTCG 58.616 37.037 0.00 0.00 0.00 4.18
113 114 8.178313 GCAAGATTGTAGTTATTGGAAGAAGTC 58.822 37.037 0.00 0.00 0.00 3.01
114 115 7.665559 TGCAAGATTGTAGTTATTGGAAGAAGT 59.334 33.333 0.00 0.00 0.00 3.01
115 116 7.965107 GTGCAAGATTGTAGTTATTGGAAGAAG 59.035 37.037 0.00 0.00 0.00 2.85
116 117 7.665559 AGTGCAAGATTGTAGTTATTGGAAGAA 59.334 33.333 0.00 0.00 0.00 2.52
117 118 7.168219 AGTGCAAGATTGTAGTTATTGGAAGA 58.832 34.615 0.00 0.00 0.00 2.87
118 119 7.383102 AGTGCAAGATTGTAGTTATTGGAAG 57.617 36.000 0.00 0.00 0.00 3.46
119 120 7.759489 AAGTGCAAGATTGTAGTTATTGGAA 57.241 32.000 2.38 0.00 35.19 3.53
120 121 7.759489 AAAGTGCAAGATTGTAGTTATTGGA 57.241 32.000 4.48 0.00 35.77 3.53
121 122 8.299570 AGAAAAGTGCAAGATTGTAGTTATTGG 58.700 33.333 4.48 0.00 35.77 3.16
124 125 9.944376 TCTAGAAAAGTGCAAGATTGTAGTTAT 57.056 29.630 4.48 0.00 35.77 1.89
125 126 9.772973 TTCTAGAAAAGTGCAAGATTGTAGTTA 57.227 29.630 1.68 0.00 35.77 2.24
126 127 8.677148 TTCTAGAAAAGTGCAAGATTGTAGTT 57.323 30.769 1.68 0.00 37.92 2.24
127 128 8.677148 TTTCTAGAAAAGTGCAAGATTGTAGT 57.323 30.769 15.57 0.00 0.00 2.73
128 129 9.950680 TTTTTCTAGAAAAGTGCAAGATTGTAG 57.049 29.630 25.38 0.00 40.83 2.74
148 149 8.457261 GCACACAAGAGATCAGATTATTTTTCT 58.543 33.333 0.00 0.00 0.00 2.52
149 150 8.239314 TGCACACAAGAGATCAGATTATTTTTC 58.761 33.333 0.00 0.00 0.00 2.29
150 151 8.025445 GTGCACACAAGAGATCAGATTATTTTT 58.975 33.333 13.17 0.00 0.00 1.94
151 152 7.175467 TGTGCACACAAGAGATCAGATTATTTT 59.825 33.333 17.42 0.00 38.56 1.82
152 153 6.656270 TGTGCACACAAGAGATCAGATTATTT 59.344 34.615 17.42 0.00 38.56 1.40
153 154 6.175471 TGTGCACACAAGAGATCAGATTATT 58.825 36.000 17.42 0.00 38.56 1.40
154 155 5.737860 TGTGCACACAAGAGATCAGATTAT 58.262 37.500 17.42 0.00 38.56 1.28
155 156 5.151297 TGTGCACACAAGAGATCAGATTA 57.849 39.130 17.42 0.00 38.56 1.75
156 157 4.011966 TGTGCACACAAGAGATCAGATT 57.988 40.909 17.42 0.00 38.56 2.40
157 158 3.690475 TGTGCACACAAGAGATCAGAT 57.310 42.857 17.42 0.00 38.56 2.90
158 159 3.244318 ACATGTGCACACAAGAGATCAGA 60.244 43.478 24.37 0.00 45.41 3.27
159 160 3.072211 ACATGTGCACACAAGAGATCAG 58.928 45.455 24.37 4.61 45.41 2.90
160 161 3.130280 ACATGTGCACACAAGAGATCA 57.870 42.857 24.37 0.00 45.41 2.92
161 162 3.750130 AGAACATGTGCACACAAGAGATC 59.250 43.478 24.37 13.19 45.41 2.75
162 163 3.748083 AGAACATGTGCACACAAGAGAT 58.252 40.909 24.37 0.27 45.41 2.75
163 164 3.133691 GAGAACATGTGCACACAAGAGA 58.866 45.455 24.37 0.00 45.41 3.10
164 165 3.059120 CAGAGAACATGTGCACACAAGAG 60.059 47.826 24.37 12.19 45.41 2.85
165 166 2.874086 CAGAGAACATGTGCACACAAGA 59.126 45.455 24.37 0.00 45.41 3.02
166 167 3.263602 CAGAGAACATGTGCACACAAG 57.736 47.619 24.37 17.35 45.41 3.16
173 174 2.544685 AGTATCGCAGAGAACATGTGC 58.455 47.619 0.00 0.00 43.63 4.57
174 175 6.918022 TGTATTAGTATCGCAGAGAACATGTG 59.082 38.462 0.00 0.00 43.63 3.21
175 176 7.039313 TGTATTAGTATCGCAGAGAACATGT 57.961 36.000 0.00 0.00 43.63 3.21
176 177 7.274468 GGATGTATTAGTATCGCAGAGAACATG 59.726 40.741 0.00 0.00 43.63 3.21
177 178 7.039714 TGGATGTATTAGTATCGCAGAGAACAT 60.040 37.037 0.00 0.00 43.63 2.71
178 179 6.264518 TGGATGTATTAGTATCGCAGAGAACA 59.735 38.462 0.00 0.00 43.63 3.18
179 180 6.678878 TGGATGTATTAGTATCGCAGAGAAC 58.321 40.000 0.00 0.00 43.63 3.01
180 181 6.894339 TGGATGTATTAGTATCGCAGAGAA 57.106 37.500 0.00 0.00 43.63 2.87
181 182 6.434340 ACATGGATGTATTAGTATCGCAGAGA 59.566 38.462 0.00 0.00 38.90 3.10
182 183 6.529477 CACATGGATGTATTAGTATCGCAGAG 59.471 42.308 0.00 0.00 38.68 3.35
183 184 6.015434 ACACATGGATGTATTAGTATCGCAGA 60.015 38.462 0.00 0.00 39.39 4.26
184 185 6.159293 ACACATGGATGTATTAGTATCGCAG 58.841 40.000 0.00 0.00 39.39 5.18
185 186 6.096673 ACACATGGATGTATTAGTATCGCA 57.903 37.500 0.00 0.00 39.39 5.10
186 187 8.120030 CATACACATGGATGTATTAGTATCGC 57.880 38.462 6.30 0.00 41.98 4.58
202 203 3.071023 CCCCAGTAGTACCCATACACATG 59.929 52.174 0.00 0.00 33.30 3.21
203 204 3.314693 CCCCAGTAGTACCCATACACAT 58.685 50.000 0.00 0.00 33.30 3.21
204 205 2.754465 CCCCAGTAGTACCCATACACA 58.246 52.381 0.00 0.00 33.30 3.72
205 206 1.415289 GCCCCAGTAGTACCCATACAC 59.585 57.143 0.00 0.00 33.30 2.90
206 207 1.693404 GGCCCCAGTAGTACCCATACA 60.693 57.143 0.00 0.00 33.30 2.29
207 208 1.054231 GGCCCCAGTAGTACCCATAC 58.946 60.000 0.00 0.00 0.00 2.39
208 209 0.946522 AGGCCCCAGTAGTACCCATA 59.053 55.000 0.00 0.00 0.00 2.74
209 210 0.694444 CAGGCCCCAGTAGTACCCAT 60.694 60.000 0.00 0.00 0.00 4.00
210 211 1.306654 CAGGCCCCAGTAGTACCCA 60.307 63.158 0.00 0.00 0.00 4.51
211 212 0.031817 TACAGGCCCCAGTAGTACCC 60.032 60.000 0.00 0.00 0.00 3.69
212 213 1.411041 CTACAGGCCCCAGTAGTACC 58.589 60.000 15.81 0.00 33.27 3.34
213 214 0.751452 GCTACAGGCCCCAGTAGTAC 59.249 60.000 21.71 8.60 38.02 2.73
214 215 0.635009 AGCTACAGGCCCCAGTAGTA 59.365 55.000 21.71 7.29 43.05 1.82
215 216 0.688087 GAGCTACAGGCCCCAGTAGT 60.688 60.000 21.71 12.72 43.05 2.73
216 217 0.687757 TGAGCTACAGGCCCCAGTAG 60.688 60.000 18.47 18.47 43.05 2.57
217 218 0.976073 GTGAGCTACAGGCCCCAGTA 60.976 60.000 0.00 0.00 43.05 2.74
218 219 2.122729 TGAGCTACAGGCCCCAGT 59.877 61.111 0.00 0.00 43.05 4.00
219 220 0.687757 TAGTGAGCTACAGGCCCCAG 60.688 60.000 0.00 0.00 43.05 4.45
220 221 0.252513 TTAGTGAGCTACAGGCCCCA 60.253 55.000 0.00 0.00 43.05 4.96
221 222 1.132500 ATTAGTGAGCTACAGGCCCC 58.868 55.000 0.00 0.00 43.05 5.80
222 223 2.945668 CAAATTAGTGAGCTACAGGCCC 59.054 50.000 0.00 0.00 43.05 5.80
223 224 3.375299 CACAAATTAGTGAGCTACAGGCC 59.625 47.826 0.00 0.00 42.05 5.19
224 225 3.375299 CCACAAATTAGTGAGCTACAGGC 59.625 47.826 0.00 0.00 42.05 4.85
225 226 4.579869 ACCACAAATTAGTGAGCTACAGG 58.420 43.478 0.00 0.00 42.05 4.00
226 227 5.122396 GGAACCACAAATTAGTGAGCTACAG 59.878 44.000 0.00 0.00 42.05 2.74
227 228 5.001232 GGAACCACAAATTAGTGAGCTACA 58.999 41.667 0.00 0.00 42.05 2.74
228 229 5.547181 GGAACCACAAATTAGTGAGCTAC 57.453 43.478 0.00 0.00 42.05 3.58
239 240 8.755028 GGTAAATAATTACAGGGAACCACAAAT 58.245 33.333 3.21 0.00 45.56 2.32
240 241 7.951245 AGGTAAATAATTACAGGGAACCACAAA 59.049 33.333 3.21 0.00 45.56 2.83
241 242 7.471890 AGGTAAATAATTACAGGGAACCACAA 58.528 34.615 3.21 0.00 45.56 3.33
242 243 7.034967 AGGTAAATAATTACAGGGAACCACA 57.965 36.000 3.21 0.00 45.56 4.17
243 244 7.282450 CAGAGGTAAATAATTACAGGGAACCAC 59.718 40.741 3.21 0.00 45.56 4.16
244 245 7.343357 CAGAGGTAAATAATTACAGGGAACCA 58.657 38.462 3.21 0.00 45.56 3.67
245 246 6.262496 GCAGAGGTAAATAATTACAGGGAACC 59.738 42.308 3.21 0.00 43.19 3.62
246 247 7.054751 AGCAGAGGTAAATAATTACAGGGAAC 58.945 38.462 3.21 0.00 42.66 3.62
247 248 7.208064 AGCAGAGGTAAATAATTACAGGGAA 57.792 36.000 3.21 0.00 42.66 3.97
248 249 6.824958 AGCAGAGGTAAATAATTACAGGGA 57.175 37.500 3.21 0.00 42.66 4.20
249 250 8.375506 TGATAGCAGAGGTAAATAATTACAGGG 58.624 37.037 3.21 0.00 42.66 4.45
250 251 9.950496 ATGATAGCAGAGGTAAATAATTACAGG 57.050 33.333 3.21 0.00 42.66 4.00
252 253 9.219603 GCATGATAGCAGAGGTAAATAATTACA 57.780 33.333 0.00 0.00 42.66 2.41
253 254 9.442047 AGCATGATAGCAGAGGTAAATAATTAC 57.558 33.333 0.00 0.00 37.85 1.89
254 255 9.440773 CAGCATGATAGCAGAGGTAAATAATTA 57.559 33.333 0.00 0.00 39.69 1.40
255 256 7.392673 CCAGCATGATAGCAGAGGTAAATAATT 59.607 37.037 0.00 0.00 39.69 1.40
256 257 6.883217 CCAGCATGATAGCAGAGGTAAATAAT 59.117 38.462 0.00 0.00 39.69 1.28
257 258 6.183361 ACCAGCATGATAGCAGAGGTAAATAA 60.183 38.462 0.00 0.00 39.69 1.40
258 259 5.307976 ACCAGCATGATAGCAGAGGTAAATA 59.692 40.000 0.00 0.00 39.69 1.40
259 260 4.103785 ACCAGCATGATAGCAGAGGTAAAT 59.896 41.667 0.00 0.00 39.69 1.40
260 261 3.455910 ACCAGCATGATAGCAGAGGTAAA 59.544 43.478 0.00 0.00 39.69 2.01
261 262 3.041211 ACCAGCATGATAGCAGAGGTAA 58.959 45.455 0.00 0.00 39.69 2.85
262 263 2.682594 ACCAGCATGATAGCAGAGGTA 58.317 47.619 0.00 0.00 39.69 3.08
263 264 1.504912 ACCAGCATGATAGCAGAGGT 58.495 50.000 0.00 0.00 39.69 3.85
264 265 2.634815 AACCAGCATGATAGCAGAGG 57.365 50.000 0.00 0.00 39.69 3.69
265 266 2.543012 CGAAACCAGCATGATAGCAGAG 59.457 50.000 0.00 0.00 39.69 3.35
266 267 2.554142 CGAAACCAGCATGATAGCAGA 58.446 47.619 0.00 0.00 39.69 4.26
267 268 1.600957 CCGAAACCAGCATGATAGCAG 59.399 52.381 0.00 0.00 39.69 4.24
268 269 1.667236 CCGAAACCAGCATGATAGCA 58.333 50.000 0.00 0.00 39.69 3.49
269 270 0.308993 GCCGAAACCAGCATGATAGC 59.691 55.000 0.00 0.00 39.69 2.97
270 271 1.959042 AGCCGAAACCAGCATGATAG 58.041 50.000 0.00 0.00 39.69 2.08
271 272 3.181455 ACATAGCCGAAACCAGCATGATA 60.181 43.478 0.00 0.00 39.69 2.15
272 273 2.224606 CATAGCCGAAACCAGCATGAT 58.775 47.619 0.00 0.00 39.69 2.45
273 274 1.065491 ACATAGCCGAAACCAGCATGA 60.065 47.619 0.00 0.00 39.69 3.07
274 275 1.382522 ACATAGCCGAAACCAGCATG 58.617 50.000 0.00 0.00 0.00 4.06
275 276 2.170607 ACTACATAGCCGAAACCAGCAT 59.829 45.455 0.00 0.00 0.00 3.79
276 277 1.553248 ACTACATAGCCGAAACCAGCA 59.447 47.619 0.00 0.00 0.00 4.41
277 278 2.311124 ACTACATAGCCGAAACCAGC 57.689 50.000 0.00 0.00 0.00 4.85
278 279 4.142004 ACCTTACTACATAGCCGAAACCAG 60.142 45.833 0.00 0.00 0.00 4.00
279 280 3.770933 ACCTTACTACATAGCCGAAACCA 59.229 43.478 0.00 0.00 0.00 3.67
280 281 4.366586 GACCTTACTACATAGCCGAAACC 58.633 47.826 0.00 0.00 0.00 3.27
281 282 4.099113 AGGACCTTACTACATAGCCGAAAC 59.901 45.833 0.00 0.00 0.00 2.78
282 283 4.284178 AGGACCTTACTACATAGCCGAAA 58.716 43.478 0.00 0.00 0.00 3.46
283 284 3.887716 GAGGACCTTACTACATAGCCGAA 59.112 47.826 0.00 0.00 0.00 4.30
284 285 3.484407 GAGGACCTTACTACATAGCCGA 58.516 50.000 0.00 0.00 0.00 5.54
285 286 2.225963 CGAGGACCTTACTACATAGCCG 59.774 54.545 0.00 0.00 0.00 5.52
286 287 3.252944 GTCGAGGACCTTACTACATAGCC 59.747 52.174 0.00 0.00 0.00 3.93
287 288 3.881688 TGTCGAGGACCTTACTACATAGC 59.118 47.826 0.00 0.00 0.00 2.97
288 289 7.925043 ATATGTCGAGGACCTTACTACATAG 57.075 40.000 17.15 0.00 33.33 2.23
289 290 8.600668 AGTATATGTCGAGGACCTTACTACATA 58.399 37.037 15.64 15.64 34.07 2.29
290 291 7.460071 AGTATATGTCGAGGACCTTACTACAT 58.540 38.462 13.29 13.29 0.00 2.29
291 292 6.835174 AGTATATGTCGAGGACCTTACTACA 58.165 40.000 0.00 0.00 0.00 2.74
292 293 7.661027 AGAAGTATATGTCGAGGACCTTACTAC 59.339 40.741 0.00 0.00 0.00 2.73
293 294 7.743749 AGAAGTATATGTCGAGGACCTTACTA 58.256 38.462 0.00 0.00 0.00 1.82
294 295 6.603224 AGAAGTATATGTCGAGGACCTTACT 58.397 40.000 0.00 0.00 0.00 2.24
295 296 6.347563 CGAGAAGTATATGTCGAGGACCTTAC 60.348 46.154 0.00 0.00 38.25 2.34
296 297 5.699915 CGAGAAGTATATGTCGAGGACCTTA 59.300 44.000 0.00 0.00 38.25 2.69
297 298 4.515944 CGAGAAGTATATGTCGAGGACCTT 59.484 45.833 0.00 0.00 38.25 3.50
298 299 4.066490 CGAGAAGTATATGTCGAGGACCT 58.934 47.826 0.00 0.00 38.25 3.85
299 300 3.814283 ACGAGAAGTATATGTCGAGGACC 59.186 47.826 0.74 0.00 38.25 4.46
300 301 5.007430 TGAACGAGAAGTATATGTCGAGGAC 59.993 44.000 0.74 0.00 38.25 3.85
301 302 5.121105 TGAACGAGAAGTATATGTCGAGGA 58.879 41.667 0.74 0.00 38.25 3.71
302 303 5.419760 TGAACGAGAAGTATATGTCGAGG 57.580 43.478 0.74 0.00 38.25 4.63
303 304 7.187480 TCTTTGAACGAGAAGTATATGTCGAG 58.813 38.462 0.74 0.00 38.25 4.04
304 305 7.080353 TCTTTGAACGAGAAGTATATGTCGA 57.920 36.000 0.74 0.00 38.25 4.20
305 306 7.736031 TTCTTTGAACGAGAAGTATATGTCG 57.264 36.000 0.00 0.00 41.40 4.35
309 310 9.817809 TGCTAATTCTTTGAACGAGAAGTATAT 57.182 29.630 0.00 0.00 36.64 0.86
310 311 9.084164 GTGCTAATTCTTTGAACGAGAAGTATA 57.916 33.333 0.00 0.00 36.64 1.47
311 312 7.819900 AGTGCTAATTCTTTGAACGAGAAGTAT 59.180 33.333 0.00 0.00 36.64 2.12
312 313 7.152645 AGTGCTAATTCTTTGAACGAGAAGTA 58.847 34.615 0.00 0.00 36.64 2.24
313 314 5.992217 AGTGCTAATTCTTTGAACGAGAAGT 59.008 36.000 0.00 0.00 36.64 3.01
314 315 6.473397 AGTGCTAATTCTTTGAACGAGAAG 57.527 37.500 0.00 0.00 36.64 2.85
315 316 6.481976 TGAAGTGCTAATTCTTTGAACGAGAA 59.518 34.615 0.00 0.00 37.52 2.87
316 317 5.989168 TGAAGTGCTAATTCTTTGAACGAGA 59.011 36.000 0.00 0.00 0.00 4.04
317 318 6.228273 TGAAGTGCTAATTCTTTGAACGAG 57.772 37.500 0.00 0.00 0.00 4.18
318 319 6.612247 TTGAAGTGCTAATTCTTTGAACGA 57.388 33.333 0.00 0.00 0.00 3.85
319 320 7.858052 AATTGAAGTGCTAATTCTTTGAACG 57.142 32.000 0.00 0.00 0.00 3.95
343 344 6.205853 ACTGATGTTATGTAGGCGAACAAAAA 59.794 34.615 0.00 0.00 36.70 1.94
344 345 5.703592 ACTGATGTTATGTAGGCGAACAAAA 59.296 36.000 0.00 0.00 36.70 2.44
345 346 5.242434 ACTGATGTTATGTAGGCGAACAAA 58.758 37.500 0.00 0.00 36.70 2.83
346 347 4.827692 ACTGATGTTATGTAGGCGAACAA 58.172 39.130 0.00 0.00 36.70 2.83
347 348 4.465632 ACTGATGTTATGTAGGCGAACA 57.534 40.909 0.00 0.00 37.47 3.18
348 349 4.743644 GGTACTGATGTTATGTAGGCGAAC 59.256 45.833 0.00 0.00 0.00 3.95
349 350 4.403113 TGGTACTGATGTTATGTAGGCGAA 59.597 41.667 0.00 0.00 0.00 4.70
350 351 3.955551 TGGTACTGATGTTATGTAGGCGA 59.044 43.478 0.00 0.00 0.00 5.54
351 352 4.299155 CTGGTACTGATGTTATGTAGGCG 58.701 47.826 0.00 0.00 0.00 5.52
352 353 4.058817 GCTGGTACTGATGTTATGTAGGC 58.941 47.826 0.00 0.00 0.00 3.93
353 354 4.299155 CGCTGGTACTGATGTTATGTAGG 58.701 47.826 0.00 0.00 0.00 3.18
354 355 4.202121 ACCGCTGGTACTGATGTTATGTAG 60.202 45.833 0.00 0.00 32.11 2.74
355 356 3.702548 ACCGCTGGTACTGATGTTATGTA 59.297 43.478 0.00 0.00 32.11 2.29
356 357 2.500098 ACCGCTGGTACTGATGTTATGT 59.500 45.455 0.00 0.00 32.11 2.29
357 358 3.179443 ACCGCTGGTACTGATGTTATG 57.821 47.619 0.00 0.00 32.11 1.90
358 359 3.243771 GCTACCGCTGGTACTGATGTTAT 60.244 47.826 3.72 0.00 37.09 1.89
359 360 2.100252 GCTACCGCTGGTACTGATGTTA 59.900 50.000 3.72 0.00 37.09 2.41
360 361 1.134788 GCTACCGCTGGTACTGATGTT 60.135 52.381 3.72 0.00 37.09 2.71
361 362 0.460311 GCTACCGCTGGTACTGATGT 59.540 55.000 3.72 0.00 37.09 3.06
362 363 0.747255 AGCTACCGCTGGTACTGATG 59.253 55.000 3.72 0.00 46.86 3.07
363 364 3.209091 AGCTACCGCTGGTACTGAT 57.791 52.632 3.72 0.00 46.86 2.90
364 365 4.757773 AGCTACCGCTGGTACTGA 57.242 55.556 3.72 0.00 46.86 3.41
592 595 6.013725 TGAACATACCTTCAGTTGGTCTACAT 60.014 38.462 0.00 0.00 38.88 2.29
1087 1090 7.755822 CGTACTAAGATATGCTATCCCAAGAAC 59.244 40.741 0.00 0.00 0.00 3.01
1330 1334 3.214328 AGCCAACTACCAACAAGAACAG 58.786 45.455 0.00 0.00 0.00 3.16
1351 1355 6.427853 CGCAGAATCCTCATTTTGATACCATA 59.572 38.462 0.00 0.00 0.00 2.74
1409 1413 7.160049 TGTTAATACATCGTCAAAGTGGGTAA 58.840 34.615 0.00 0.00 0.00 2.85
1811 1815 1.272258 GGGCCTTACTGGGTTAGCAAA 60.272 52.381 0.84 0.00 36.00 3.68
1817 1821 1.074248 CGTTGGGCCTTACTGGGTT 59.926 57.895 4.53 0.00 36.00 4.11
1818 1822 1.420532 TTCGTTGGGCCTTACTGGGT 61.421 55.000 4.53 0.00 36.00 4.51
1819 1823 0.250989 TTTCGTTGGGCCTTACTGGG 60.251 55.000 4.53 0.00 36.00 4.45
1820 1824 0.879090 GTTTCGTTGGGCCTTACTGG 59.121 55.000 4.53 0.00 39.35 4.00
1821 1825 0.879090 GGTTTCGTTGGGCCTTACTG 59.121 55.000 4.53 0.51 0.00 2.74
1822 1826 0.251033 GGGTTTCGTTGGGCCTTACT 60.251 55.000 4.53 0.00 0.00 2.24
1823 1827 0.251033 AGGGTTTCGTTGGGCCTTAC 60.251 55.000 4.53 1.80 0.00 2.34
1824 1828 1.279846 CTAGGGTTTCGTTGGGCCTTA 59.720 52.381 4.53 0.00 0.00 2.69
1825 1829 0.037734 CTAGGGTTTCGTTGGGCCTT 59.962 55.000 4.53 0.00 0.00 4.35
1826 1830 1.683441 CTAGGGTTTCGTTGGGCCT 59.317 57.895 4.53 0.00 0.00 5.19
1827 1831 2.044555 GCTAGGGTTTCGTTGGGCC 61.045 63.158 0.00 0.00 0.00 5.80
1828 1832 2.396157 CGCTAGGGTTTCGTTGGGC 61.396 63.158 0.00 0.00 0.00 5.36
1829 1833 1.004200 ACGCTAGGGTTTCGTTGGG 60.004 57.895 6.62 0.00 31.89 4.12
1830 1834 1.908066 GCACGCTAGGGTTTCGTTGG 61.908 60.000 10.17 0.00 33.84 3.77
1831 1835 1.495951 GCACGCTAGGGTTTCGTTG 59.504 57.895 10.17 0.00 33.84 4.10
1832 1836 1.670083 GGCACGCTAGGGTTTCGTT 60.670 57.895 10.17 0.00 33.84 3.85
1833 1837 2.047560 GGCACGCTAGGGTTTCGT 60.048 61.111 10.17 0.00 36.84 3.85
1834 1838 2.100631 CAGGCACGCTAGGGTTTCG 61.101 63.158 10.17 0.36 0.00 3.46
1835 1839 1.745489 CCAGGCACGCTAGGGTTTC 60.745 63.158 10.17 5.51 0.00 2.78
1836 1840 2.351276 CCAGGCACGCTAGGGTTT 59.649 61.111 10.17 0.00 0.00 3.27
1837 1841 4.410400 GCCAGGCACGCTAGGGTT 62.410 66.667 10.17 0.00 0.00 4.11
1839 1843 4.537433 GAGCCAGGCACGCTAGGG 62.537 72.222 15.80 5.05 36.48 3.53
1840 1844 2.599645 ATTGAGCCAGGCACGCTAGG 62.600 60.000 15.80 0.00 36.48 3.02
1841 1845 1.153289 ATTGAGCCAGGCACGCTAG 60.153 57.895 15.80 0.00 36.48 3.42
1842 1846 1.153369 GATTGAGCCAGGCACGCTA 60.153 57.895 15.80 0.00 36.48 4.26
1843 1847 2.437359 GATTGAGCCAGGCACGCT 60.437 61.111 15.80 0.00 39.95 5.07
1844 1848 2.437359 AGATTGAGCCAGGCACGC 60.437 61.111 15.80 2.83 0.00 5.34
1845 1849 0.674581 TTCAGATTGAGCCAGGCACG 60.675 55.000 15.80 0.00 0.00 5.34
1846 1850 0.807496 GTTCAGATTGAGCCAGGCAC 59.193 55.000 15.80 8.35 0.00 5.01
1847 1851 0.322816 GGTTCAGATTGAGCCAGGCA 60.323 55.000 15.80 0.00 45.67 4.75
1848 1852 2.486796 GGTTCAGATTGAGCCAGGC 58.513 57.895 1.84 1.84 45.67 4.85
1852 1856 4.460382 TCTTTCAATGGTTCAGATTGAGCC 59.540 41.667 5.15 5.15 46.43 4.70
1853 1857 5.633830 TCTTTCAATGGTTCAGATTGAGC 57.366 39.130 0.00 0.00 40.15 4.26
1854 1858 6.093219 ACGATCTTTCAATGGTTCAGATTGAG 59.907 38.462 0.00 0.00 40.15 3.02
1855 1859 5.939883 ACGATCTTTCAATGGTTCAGATTGA 59.060 36.000 0.00 0.00 37.91 2.57
1856 1860 6.025896 CACGATCTTTCAATGGTTCAGATTG 58.974 40.000 0.00 0.00 33.25 2.67
1857 1861 5.124457 CCACGATCTTTCAATGGTTCAGATT 59.876 40.000 0.00 0.00 0.00 2.40
1858 1862 4.637534 CCACGATCTTTCAATGGTTCAGAT 59.362 41.667 0.00 0.00 0.00 2.90
1859 1863 4.002982 CCACGATCTTTCAATGGTTCAGA 58.997 43.478 0.00 0.00 0.00 3.27
1860 1864 4.002982 TCCACGATCTTTCAATGGTTCAG 58.997 43.478 0.00 0.00 32.14 3.02
1861 1865 4.014569 TCCACGATCTTTCAATGGTTCA 57.985 40.909 0.00 0.00 32.14 3.18
1862 1866 4.396166 ACATCCACGATCTTTCAATGGTTC 59.604 41.667 0.00 0.00 32.14 3.62
1863 1867 4.335416 ACATCCACGATCTTTCAATGGTT 58.665 39.130 0.00 0.00 32.14 3.67
1864 1868 3.941483 GACATCCACGATCTTTCAATGGT 59.059 43.478 0.00 0.00 32.14 3.55
1865 1869 3.001634 CGACATCCACGATCTTTCAATGG 59.998 47.826 0.00 0.00 31.69 3.16
1866 1870 3.544834 GCGACATCCACGATCTTTCAATG 60.545 47.826 0.00 0.00 0.00 2.82
1867 1871 2.609459 GCGACATCCACGATCTTTCAAT 59.391 45.455 0.00 0.00 0.00 2.57
2119 2123 2.694109 GTGCCTCGGTTATCTCTTACCT 59.306 50.000 0.00 0.00 32.08 3.08
2544 2548 7.180408 AGTTGAGAAGCTTATTACTCTTGGGTA 59.820 37.037 12.56 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.