Multiple sequence alignment - TraesCS1A01G315600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G315600 chr1A 100.000 6703 0 0 1 6703 507085233 507078531 0.000000e+00 12379.0
1 TraesCS1A01G315600 chr1A 96.671 691 22 1 134 824 500896723 500897412 0.000000e+00 1147.0
2 TraesCS1A01G315600 chr1A 93.614 689 41 3 139 824 106084739 106085427 0.000000e+00 1026.0
3 TraesCS1A01G315600 chr1A 90.722 97 3 3 3393 3487 95850361 95850269 2.540000e-24 124.0
4 TraesCS1A01G315600 chr1D 96.160 2943 91 11 3772 6702 410795486 410792554 0.000000e+00 4789.0
5 TraesCS1A01G315600 chr1D 89.703 1447 105 22 827 2249 410798413 410796987 0.000000e+00 1807.0
6 TraesCS1A01G315600 chr1D 90.949 906 73 8 2238 3139 410796942 410796042 0.000000e+00 1210.0
7 TraesCS1A01G315600 chr1D 93.333 210 14 0 3479 3688 410795700 410795491 1.820000e-80 311.0
8 TraesCS1A01G315600 chr1D 92.857 210 6 5 3186 3393 410795904 410795702 5.080000e-76 296.0
9 TraesCS1A01G315600 chr1B 94.180 2560 100 22 3772 6330 553634142 553631631 0.000000e+00 3856.0
10 TraesCS1A01G315600 chr1B 93.279 2470 119 27 949 3395 553636799 553634354 0.000000e+00 3598.0
11 TraesCS1A01G315600 chr1B 93.519 216 13 1 3478 3693 553634355 553634141 3.020000e-83 320.0
12 TraesCS1A01G315600 chr1B 90.698 129 10 2 6576 6703 553631543 553631416 3.210000e-38 171.0
13 TraesCS1A01G315600 chr1B 88.172 93 7 1 3685 3773 493871873 493871965 2.560000e-19 108.0
14 TraesCS1A01G315600 chr1B 87.778 90 7 1 3688 3773 493871969 493871880 1.190000e-17 102.0
15 TraesCS1A01G315600 chr2B 94.067 691 38 3 137 825 256355579 256354890 0.000000e+00 1046.0
16 TraesCS1A01G315600 chr2B 93.795 693 41 2 138 828 655138840 655138148 0.000000e+00 1040.0
17 TraesCS1A01G315600 chr2B 89.373 367 33 3 5963 6325 234631643 234631279 2.200000e-124 457.0
18 TraesCS1A01G315600 chr2B 91.000 100 5 2 3392 3489 22317049 22316952 1.520000e-26 132.0
19 TraesCS1A01G315600 chr2B 96.104 77 3 0 5803 5879 234631727 234631651 7.060000e-25 126.0
20 TraesCS1A01G315600 chr2B 92.683 82 4 1 3692 3773 668173463 668173542 4.250000e-22 117.0
21 TraesCS1A01G315600 chr4B 93.886 687 41 1 139 824 66424918 66424232 0.000000e+00 1035.0
22 TraesCS1A01G315600 chr4B 93.595 687 41 3 140 824 77386575 77385890 0.000000e+00 1022.0
23 TraesCS1A01G315600 chr5B 93.450 687 43 2 139 824 273993375 273994060 0.000000e+00 1018.0
24 TraesCS1A01G315600 chr6A 93.198 691 44 3 135 824 412333762 412334450 0.000000e+00 1013.0
25 TraesCS1A01G315600 chr6A 92.553 94 2 4 3391 3482 584511360 584511450 5.460000e-26 130.0
26 TraesCS1A01G315600 chr6B 93.169 688 46 1 137 824 512497138 512497824 0.000000e+00 1009.0
27 TraesCS1A01G315600 chr6B 93.407 91 1 2 3393 3481 13827610 13827523 5.460000e-26 130.0
28 TraesCS1A01G315600 chr6B 92.308 39 3 0 6471 6509 432571014 432570976 1.000000e-03 56.5
29 TraesCS1A01G315600 chr3B 91.667 96 5 2 3393 3485 771737663 771737758 5.460000e-26 130.0
30 TraesCS1A01G315600 chr3B 90.722 97 7 2 3379 3474 178267996 178267901 1.960000e-25 128.0
31 TraesCS1A01G315600 chr3B 90.476 84 6 2 3690 3773 424740571 424740490 7.110000e-20 110.0
32 TraesCS1A01G315600 chr3B 89.535 86 7 2 3688 3773 424740486 424740569 2.560000e-19 108.0
33 TraesCS1A01G315600 chr6D 90.625 96 6 1 3379 3474 465044409 465044501 2.540000e-24 124.0
34 TraesCS1A01G315600 chr4D 91.489 94 3 3 3390 3481 23320536 23320446 2.540000e-24 124.0
35 TraesCS1A01G315600 chr4D 89.535 86 5 1 3692 3773 450203706 450203791 9.190000e-19 106.0
36 TraesCS1A01G315600 chr4D 86.813 91 10 1 3683 3773 443515477 443515565 4.280000e-17 100.0
37 TraesCS1A01G315600 chr3A 90.722 97 4 2 3392 3486 22230634 22230727 2.540000e-24 124.0
38 TraesCS1A01G315600 chr3A 88.043 92 6 2 3687 3774 130842942 130842852 3.310000e-18 104.0
39 TraesCS1A01G315600 chr2A 86.170 94 9 2 3697 3790 724518153 724518242 1.540000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G315600 chr1A 507078531 507085233 6702 True 12379.00 12379 100.0000 1 6703 1 chr1A.!!$R2 6702
1 TraesCS1A01G315600 chr1A 500896723 500897412 689 False 1147.00 1147 96.6710 134 824 1 chr1A.!!$F2 690
2 TraesCS1A01G315600 chr1A 106084739 106085427 688 False 1026.00 1026 93.6140 139 824 1 chr1A.!!$F1 685
3 TraesCS1A01G315600 chr1D 410792554 410798413 5859 True 1682.60 4789 92.6004 827 6702 5 chr1D.!!$R1 5875
4 TraesCS1A01G315600 chr1B 553631416 553636799 5383 True 1986.25 3856 92.9190 949 6703 4 chr1B.!!$R2 5754
5 TraesCS1A01G315600 chr2B 256354890 256355579 689 True 1046.00 1046 94.0670 137 825 1 chr2B.!!$R2 688
6 TraesCS1A01G315600 chr2B 655138148 655138840 692 True 1040.00 1040 93.7950 138 828 1 chr2B.!!$R3 690
7 TraesCS1A01G315600 chr4B 66424232 66424918 686 True 1035.00 1035 93.8860 139 824 1 chr4B.!!$R1 685
8 TraesCS1A01G315600 chr4B 77385890 77386575 685 True 1022.00 1022 93.5950 140 824 1 chr4B.!!$R2 684
9 TraesCS1A01G315600 chr5B 273993375 273994060 685 False 1018.00 1018 93.4500 139 824 1 chr5B.!!$F1 685
10 TraesCS1A01G315600 chr6A 412333762 412334450 688 False 1013.00 1013 93.1980 135 824 1 chr6A.!!$F1 689
11 TraesCS1A01G315600 chr6B 512497138 512497824 686 False 1009.00 1009 93.1690 137 824 1 chr6B.!!$F1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 916 0.030369 CCGCACGAGTATACCTGGAC 59.970 60.000 0.00 0.00 0.00 4.02 F
1581 1594 0.040058 TTGATGGAATGCCTGCAGGT 59.960 50.000 32.81 14.76 37.57 4.00 F
1598 1611 0.248289 GGTACTGCAGCCGAGGTTAA 59.752 55.000 15.27 0.00 0.00 2.01 F
1615 1628 0.666913 TAATACCAGAGGCGCGTCTC 59.333 55.000 32.52 32.52 0.00 3.36 F
2834 2923 1.200948 GCCAAGTCTGCCACAAGAATC 59.799 52.381 0.00 0.00 0.00 2.52 F
3708 3891 1.053424 ACTACTGCCTCCGTTCCAAA 58.947 50.000 0.00 0.00 0.00 3.28 F
3715 3898 1.202143 GCCTCCGTTCCAAAATAAGCG 60.202 52.381 0.00 0.00 0.00 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 1913 0.249911 CCGCTAATCCTACAGCCCAC 60.250 60.000 0.00 0.0 34.15 4.61 R
2834 2923 1.332375 GCTGAGACTCCTAGTACAGCG 59.668 57.143 16.84 0.0 43.24 5.18 R
3383 3566 1.749634 ACGGAGGGAGTATGTCTTTCG 59.250 52.381 0.00 0.0 0.00 3.46 R
3610 3793 2.993840 AGCGAGCTCCTGACAGCA 60.994 61.111 8.47 0.0 42.40 4.41 R
4815 5004 0.402121 AGACAACCCCAGAGGAAAGC 59.598 55.000 0.00 0.0 39.89 3.51 R
5591 5780 0.691332 ACTCCGAAACTTTCCCCTCC 59.309 55.000 0.00 0.0 0.00 4.30 R
5892 6081 2.233676 TCTGCGAGTATGCTTTGAAGGA 59.766 45.455 0.00 0.0 35.36 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.899734 TGAGTGAATTTGTTTGCATCGG 58.100 40.909 0.00 0.00 0.00 4.18
23 24 3.317711 TGAGTGAATTTGTTTGCATCGGT 59.682 39.130 0.00 0.00 0.00 4.69
24 25 4.202101 TGAGTGAATTTGTTTGCATCGGTT 60.202 37.500 0.00 0.00 0.00 4.44
25 26 4.692228 AGTGAATTTGTTTGCATCGGTTT 58.308 34.783 0.00 0.00 0.00 3.27
26 27 5.115480 AGTGAATTTGTTTGCATCGGTTTT 58.885 33.333 0.00 0.00 0.00 2.43
27 28 5.234116 AGTGAATTTGTTTGCATCGGTTTTC 59.766 36.000 0.00 0.00 0.00 2.29
28 29 4.208047 TGAATTTGTTTGCATCGGTTTTCG 59.792 37.500 0.00 0.00 40.90 3.46
29 30 2.853731 TTGTTTGCATCGGTTTTCGT 57.146 40.000 0.00 0.00 40.32 3.85
30 31 2.392933 TGTTTGCATCGGTTTTCGTC 57.607 45.000 0.00 0.00 40.32 4.20
31 32 1.944024 TGTTTGCATCGGTTTTCGTCT 59.056 42.857 0.00 0.00 40.32 4.18
32 33 2.286713 TGTTTGCATCGGTTTTCGTCTG 60.287 45.455 0.00 0.00 40.32 3.51
33 34 0.871722 TTGCATCGGTTTTCGTCTGG 59.128 50.000 0.00 0.00 40.32 3.86
34 35 0.250124 TGCATCGGTTTTCGTCTGGT 60.250 50.000 0.00 0.00 40.32 4.00
35 36 0.872388 GCATCGGTTTTCGTCTGGTT 59.128 50.000 0.00 0.00 40.32 3.67
36 37 1.265905 GCATCGGTTTTCGTCTGGTTT 59.734 47.619 0.00 0.00 40.32 3.27
37 38 2.287368 GCATCGGTTTTCGTCTGGTTTT 60.287 45.455 0.00 0.00 40.32 2.43
38 39 3.794138 GCATCGGTTTTCGTCTGGTTTTT 60.794 43.478 0.00 0.00 40.32 1.94
68 69 9.875691 ATATTAACCTGGCAATTCTTTTCTTTC 57.124 29.630 0.00 0.00 0.00 2.62
69 70 4.243007 ACCTGGCAATTCTTTTCTTTCG 57.757 40.909 0.00 0.00 0.00 3.46
70 71 3.888930 ACCTGGCAATTCTTTTCTTTCGA 59.111 39.130 0.00 0.00 0.00 3.71
71 72 4.340950 ACCTGGCAATTCTTTTCTTTCGAA 59.659 37.500 0.00 0.00 0.00 3.71
72 73 5.011023 ACCTGGCAATTCTTTTCTTTCGAAT 59.989 36.000 0.00 0.00 0.00 3.34
73 74 5.928264 CCTGGCAATTCTTTTCTTTCGAATT 59.072 36.000 0.00 0.00 37.73 2.17
74 75 7.090173 CCTGGCAATTCTTTTCTTTCGAATTA 58.910 34.615 0.00 0.00 36.06 1.40
75 76 7.598493 CCTGGCAATTCTTTTCTTTCGAATTAA 59.402 33.333 0.00 0.00 36.06 1.40
76 77 8.293114 TGGCAATTCTTTTCTTTCGAATTAAC 57.707 30.769 0.00 0.00 36.06 2.01
77 78 7.383843 TGGCAATTCTTTTCTTTCGAATTAACC 59.616 33.333 0.00 0.00 36.06 2.85
78 79 7.383843 GGCAATTCTTTTCTTTCGAATTAACCA 59.616 33.333 0.00 0.00 36.06 3.67
79 80 8.760569 GCAATTCTTTTCTTTCGAATTAACCAA 58.239 29.630 0.00 0.00 36.06 3.67
81 82 7.901874 TTCTTTTCTTTCGAATTAACCAACG 57.098 32.000 0.00 0.00 0.00 4.10
82 83 7.249186 TCTTTTCTTTCGAATTAACCAACGA 57.751 32.000 0.00 0.00 0.00 3.85
83 84 7.349711 TCTTTTCTTTCGAATTAACCAACGAG 58.650 34.615 0.00 0.00 36.22 4.18
84 85 5.600908 TTCTTTCGAATTAACCAACGAGG 57.399 39.130 0.00 0.00 45.67 4.63
96 97 1.200020 CCAACGAGGTGATCCTTTTGC 59.800 52.381 0.00 0.00 45.24 3.68
97 98 1.200020 CAACGAGGTGATCCTTTTGCC 59.800 52.381 0.00 0.00 45.24 4.52
98 99 0.400213 ACGAGGTGATCCTTTTGCCA 59.600 50.000 0.00 0.00 45.24 4.92
99 100 1.202879 ACGAGGTGATCCTTTTGCCAA 60.203 47.619 0.00 0.00 45.24 4.52
100 101 1.200020 CGAGGTGATCCTTTTGCCAAC 59.800 52.381 0.00 0.00 45.24 3.77
101 102 1.200020 GAGGTGATCCTTTTGCCAACG 59.800 52.381 0.00 0.00 45.24 4.10
102 103 0.958822 GGTGATCCTTTTGCCAACGT 59.041 50.000 0.00 0.00 0.00 3.99
103 104 1.339929 GGTGATCCTTTTGCCAACGTT 59.660 47.619 0.00 0.00 0.00 3.99
104 105 2.223947 GGTGATCCTTTTGCCAACGTTT 60.224 45.455 0.00 0.00 0.00 3.60
105 106 3.453424 GTGATCCTTTTGCCAACGTTTT 58.547 40.909 0.00 0.00 0.00 2.43
106 107 3.868661 GTGATCCTTTTGCCAACGTTTTT 59.131 39.130 0.00 0.00 0.00 1.94
107 108 3.868077 TGATCCTTTTGCCAACGTTTTTG 59.132 39.130 0.00 0.00 0.00 2.44
108 109 2.622436 TCCTTTTGCCAACGTTTTTGG 58.378 42.857 0.00 0.00 42.37 3.28
109 110 1.668237 CCTTTTGCCAACGTTTTTGGG 59.332 47.619 0.00 0.00 39.90 4.12
110 111 1.668237 CTTTTGCCAACGTTTTTGGGG 59.332 47.619 0.00 0.00 39.90 4.96
111 112 0.107654 TTTGCCAACGTTTTTGGGGG 60.108 50.000 0.00 0.00 39.90 5.40
112 113 0.976073 TTGCCAACGTTTTTGGGGGA 60.976 50.000 0.00 0.00 39.90 4.81
113 114 0.976073 TGCCAACGTTTTTGGGGGAA 60.976 50.000 0.00 0.00 39.90 3.97
114 115 0.178301 GCCAACGTTTTTGGGGGAAA 59.822 50.000 0.00 0.00 39.90 3.13
115 116 1.407025 GCCAACGTTTTTGGGGGAAAA 60.407 47.619 0.00 0.00 39.90 2.29
116 117 2.940083 GCCAACGTTTTTGGGGGAAAAA 60.940 45.455 0.00 0.00 40.52 1.94
117 118 3.546724 CCAACGTTTTTGGGGGAAAAAT 58.453 40.909 0.00 0.00 43.71 1.82
118 119 4.704965 CCAACGTTTTTGGGGGAAAAATA 58.295 39.130 0.00 0.00 43.71 1.40
119 120 4.752604 CCAACGTTTTTGGGGGAAAAATAG 59.247 41.667 0.00 0.00 43.71 1.73
120 121 3.997762 ACGTTTTTGGGGGAAAAATAGC 58.002 40.909 0.00 0.00 43.71 2.97
121 122 3.244284 ACGTTTTTGGGGGAAAAATAGCC 60.244 43.478 0.00 0.00 43.71 3.93
122 123 3.331150 GTTTTTGGGGGAAAAATAGCCG 58.669 45.455 0.00 0.00 43.71 5.52
123 124 1.562783 TTTGGGGGAAAAATAGCCGG 58.437 50.000 0.00 0.00 0.00 6.13
124 125 0.410270 TTGGGGGAAAAATAGCCGGT 59.590 50.000 1.90 0.00 0.00 5.28
125 126 1.296984 TGGGGGAAAAATAGCCGGTA 58.703 50.000 1.90 0.00 0.00 4.02
126 127 1.639628 TGGGGGAAAAATAGCCGGTAA 59.360 47.619 1.90 0.00 0.00 2.85
127 128 2.026641 GGGGGAAAAATAGCCGGTAAC 58.973 52.381 1.90 0.00 0.00 2.50
268 269 4.469657 GATTGTTTATGGGTAGGGCATGA 58.530 43.478 0.00 0.00 0.00 3.07
369 372 0.320374 ACGTTCACATGTCCCACGAT 59.680 50.000 21.73 8.34 34.90 3.73
583 587 7.888021 TGGATGTTGATTAACCATAAGTGAAGT 59.112 33.333 0.00 0.00 35.92 3.01
613 617 2.289694 CCACGAGGTGAAGAATGGAAGT 60.290 50.000 0.00 0.00 35.23 3.01
668 672 1.272480 TGTCTCGAGAGGACCCAATGA 60.272 52.381 17.22 0.00 32.54 2.57
708 712 3.582998 ATCCATCGGATTTGGACATGT 57.417 42.857 0.00 0.00 45.71 3.21
762 767 4.233789 GGCGTGCAAAAATTGTCTTCATA 58.766 39.130 0.00 0.00 0.00 2.15
763 768 4.089923 GGCGTGCAAAAATTGTCTTCATAC 59.910 41.667 0.00 0.00 0.00 2.39
819 824 1.073603 CAAACCCAACCCATTGCCATT 59.926 47.619 0.00 0.00 34.17 3.16
825 830 3.455543 CCCAACCCATTGCCATTCTTAAT 59.544 43.478 0.00 0.00 34.17 1.40
848 853 1.000385 CTACACGGGTGTACGGTTTGA 60.000 52.381 0.00 0.00 44.42 2.69
849 854 0.249573 ACACGGGTGTACGGTTTGAG 60.250 55.000 1.96 0.00 42.90 3.02
851 856 1.375013 CGGGTGTACGGTTTGAGGG 60.375 63.158 0.00 0.00 0.00 4.30
853 858 1.756665 GGTGTACGGTTTGAGGGGT 59.243 57.895 0.00 0.00 0.00 4.95
907 916 0.030369 CCGCACGAGTATACCTGGAC 59.970 60.000 0.00 0.00 0.00 4.02
938 947 0.179040 TCGTTTGTCCAGTTCCCACC 60.179 55.000 0.00 0.00 0.00 4.61
1121 1130 2.654877 CTCAACCCGTACCAGCGT 59.345 61.111 0.00 0.00 0.00 5.07
1181 1190 2.935481 CTCCAGGACCCCAAGGCA 60.935 66.667 0.00 0.00 36.11 4.75
1268 1277 1.078426 CCTCAATTTCCTCGCCGGT 60.078 57.895 1.90 0.00 0.00 5.28
1283 1292 0.179119 CCGGTTTCGAGCCTAATCGT 60.179 55.000 0.00 0.00 43.20 3.73
1387 1396 2.435938 CCTTTGCCGCCGCTTCTA 60.436 61.111 0.00 0.00 35.36 2.10
1503 1512 2.664851 CAGCGAGGTTGGTTGCGA 60.665 61.111 0.00 0.00 31.41 5.10
1504 1513 2.665185 AGCGAGGTTGGTTGCGAC 60.665 61.111 0.00 0.00 31.41 5.19
1505 1514 3.723348 GCGAGGTTGGTTGCGACC 61.723 66.667 17.01 17.01 46.71 4.79
1532 1545 3.653344 GTGCTCACACATGTCTAGTTGA 58.347 45.455 0.00 0.00 46.61 3.18
1544 1557 3.055819 TGTCTAGTTGAGGTGATTCTGGC 60.056 47.826 0.00 0.00 0.00 4.85
1550 1563 0.809241 GAGGTGATTCTGGCGCTGAG 60.809 60.000 7.64 3.70 0.00 3.35
1551 1564 1.817099 GGTGATTCTGGCGCTGAGG 60.817 63.158 7.64 0.00 0.00 3.86
1556 1569 2.866085 ATTCTGGCGCTGAGGTGCTC 62.866 60.000 7.64 0.00 46.94 4.26
1581 1594 0.040058 TTGATGGAATGCCTGCAGGT 59.960 50.000 32.81 14.76 37.57 4.00
1598 1611 0.248289 GGTACTGCAGCCGAGGTTAA 59.752 55.000 15.27 0.00 0.00 2.01
1615 1628 0.666913 TAATACCAGAGGCGCGTCTC 59.333 55.000 32.52 32.52 0.00 3.36
1643 1656 4.530553 TGCTAGTTGAGGTGAGGAACATTA 59.469 41.667 0.00 0.00 0.00 1.90
1644 1657 4.870991 GCTAGTTGAGGTGAGGAACATTAC 59.129 45.833 0.00 0.00 0.00 1.89
1647 1660 4.104102 AGTTGAGGTGAGGAACATTACCAA 59.896 41.667 3.57 0.00 35.66 3.67
1648 1661 4.715534 TGAGGTGAGGAACATTACCAAA 57.284 40.909 3.57 0.00 35.66 3.28
1664 1677 4.882842 ACCAAAGACCTTGTGTTTTTGT 57.117 36.364 7.32 0.00 43.83 2.83
1669 1682 6.090223 CCAAAGACCTTGTGTTTTTGTTGTAC 59.910 38.462 7.32 0.00 43.83 2.90
1671 1684 6.334102 AGACCTTGTGTTTTTGTTGTACAA 57.666 33.333 3.59 3.59 36.11 2.41
1672 1685 6.930731 AGACCTTGTGTTTTTGTTGTACAAT 58.069 32.000 12.26 0.00 38.00 2.71
1730 1744 5.282510 CCACAGTCCGTAATCTATTCAGTC 58.717 45.833 0.00 0.00 0.00 3.51
1855 1877 2.630889 TTGGTGCATATTTTGGGGGA 57.369 45.000 0.00 0.00 0.00 4.81
1857 1879 3.981516 TGGTGCATATTTTGGGGGATA 57.018 42.857 0.00 0.00 0.00 2.59
2130 2154 4.781775 TGGTGAGTGTTTCTTTTCCCTA 57.218 40.909 0.00 0.00 0.00 3.53
2260 2289 3.181491 TGCTATAAAAATGGGAAGTGCGC 60.181 43.478 0.00 0.00 0.00 6.09
2281 2366 3.243839 GCCTGCCATTTTTCACTGAAAGA 60.244 43.478 4.43 1.03 37.43 2.52
2307 2392 4.575236 GTGCTACTTGGTAATAGGAAAGGC 59.425 45.833 0.00 0.00 0.00 4.35
2717 2806 9.429359 CTGATTTATAGCGATGGAAGATTTACT 57.571 33.333 0.00 0.00 0.00 2.24
2758 2847 3.017048 TGAAAATGATGCCGGATCCTT 57.983 42.857 5.05 2.11 0.00 3.36
2797 2886 6.709846 AGGAAGAATTTATATGCTGAGTCTGC 59.290 38.462 14.60 14.60 0.00 4.26
2834 2923 1.200948 GCCAAGTCTGCCACAAGAATC 59.799 52.381 0.00 0.00 0.00 2.52
3147 3237 8.718102 CACCTAGTGTGTTTGTATATTAAGCT 57.282 34.615 3.86 0.00 40.26 3.74
3148 3238 9.162764 CACCTAGTGTGTTTGTATATTAAGCTT 57.837 33.333 3.48 3.48 40.26 3.74
3149 3239 9.379791 ACCTAGTGTGTTTGTATATTAAGCTTC 57.620 33.333 0.00 0.00 0.00 3.86
3150 3240 9.378551 CCTAGTGTGTTTGTATATTAAGCTTCA 57.621 33.333 0.00 0.00 0.00 3.02
3153 3243 9.893305 AGTGTGTTTGTATATTAAGCTTCAAAC 57.107 29.630 22.61 22.61 42.38 2.93
3296 3478 4.058817 ACGTCCTCACTGAAGCTAAAAAG 58.941 43.478 0.00 0.00 0.00 2.27
3332 3515 4.890158 TTCTGTTTGAGGCATGTCTAGA 57.110 40.909 0.00 0.00 0.00 2.43
3334 3517 5.227569 TCTGTTTGAGGCATGTCTAGAAA 57.772 39.130 0.00 0.00 0.00 2.52
3383 3566 4.006319 AGCTGTTCTAGTTTCTGCCATTC 58.994 43.478 0.00 0.00 0.00 2.67
3393 3576 5.245531 AGTTTCTGCCATTCGAAAGACATA 58.754 37.500 0.00 0.00 41.84 2.29
3394 3577 5.122396 AGTTTCTGCCATTCGAAAGACATAC 59.878 40.000 0.00 0.00 41.84 2.39
3395 3578 4.471904 TCTGCCATTCGAAAGACATACT 57.528 40.909 0.00 0.00 41.84 2.12
3396 3579 4.433615 TCTGCCATTCGAAAGACATACTC 58.566 43.478 0.00 0.00 41.84 2.59
3397 3580 3.531538 TGCCATTCGAAAGACATACTCC 58.468 45.455 0.00 0.00 41.84 3.85
3398 3581 2.872858 GCCATTCGAAAGACATACTCCC 59.127 50.000 0.00 0.00 41.84 4.30
3399 3582 3.432326 GCCATTCGAAAGACATACTCCCT 60.432 47.826 0.00 0.00 41.84 4.20
3400 3583 4.372656 CCATTCGAAAGACATACTCCCTC 58.627 47.826 0.00 0.00 41.84 4.30
3401 3584 4.372656 CATTCGAAAGACATACTCCCTCC 58.627 47.826 0.00 0.00 41.84 4.30
3402 3585 2.022195 TCGAAAGACATACTCCCTCCG 58.978 52.381 0.00 0.00 33.31 4.63
3403 3586 1.749634 CGAAAGACATACTCCCTCCGT 59.250 52.381 0.00 0.00 0.00 4.69
3404 3587 2.947652 CGAAAGACATACTCCCTCCGTA 59.052 50.000 0.00 0.00 0.00 4.02
3405 3588 3.379372 CGAAAGACATACTCCCTCCGTAA 59.621 47.826 0.00 0.00 0.00 3.18
3406 3589 4.142315 CGAAAGACATACTCCCTCCGTAAA 60.142 45.833 0.00 0.00 0.00 2.01
3407 3590 5.340439 AAAGACATACTCCCTCCGTAAAG 57.660 43.478 0.00 0.00 0.00 1.85
3408 3591 4.246712 AGACATACTCCCTCCGTAAAGA 57.753 45.455 0.00 0.00 0.00 2.52
3409 3592 4.607239 AGACATACTCCCTCCGTAAAGAA 58.393 43.478 0.00 0.00 0.00 2.52
3410 3593 5.021458 AGACATACTCCCTCCGTAAAGAAA 58.979 41.667 0.00 0.00 0.00 2.52
3411 3594 5.661759 AGACATACTCCCTCCGTAAAGAAAT 59.338 40.000 0.00 0.00 0.00 2.17
3412 3595 6.837568 AGACATACTCCCTCCGTAAAGAAATA 59.162 38.462 0.00 0.00 0.00 1.40
3413 3596 7.509659 AGACATACTCCCTCCGTAAAGAAATAT 59.490 37.037 0.00 0.00 0.00 1.28
3414 3597 8.716674 ACATACTCCCTCCGTAAAGAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
3415 3598 9.151177 ACATACTCCCTCCGTAAAGAAATATAA 57.849 33.333 0.00 0.00 0.00 0.98
3416 3599 9.640963 CATACTCCCTCCGTAAAGAAATATAAG 57.359 37.037 0.00 0.00 0.00 1.73
3417 3600 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3418 3601 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
3419 3602 7.564292 ACTCCCTCCGTAAAGAAATATAAGAGT 59.436 37.037 0.00 0.00 0.00 3.24
3420 3603 7.723324 TCCCTCCGTAAAGAAATATAAGAGTG 58.277 38.462 0.00 0.00 0.00 3.51
3421 3604 7.343833 TCCCTCCGTAAAGAAATATAAGAGTGT 59.656 37.037 0.00 0.00 0.00 3.55
3422 3605 7.985752 CCCTCCGTAAAGAAATATAAGAGTGTT 59.014 37.037 0.00 0.00 0.00 3.32
3423 3606 9.379791 CCTCCGTAAAGAAATATAAGAGTGTTT 57.620 33.333 0.00 0.00 0.00 2.83
3454 3637 8.278729 ACTAAAGTAGTAGTGATCTAAACGCT 57.721 34.615 0.00 0.00 37.23 5.07
3455 3638 8.397148 ACTAAAGTAGTAGTGATCTAAACGCTC 58.603 37.037 0.00 0.00 37.23 5.03
3456 3639 7.393841 AAAGTAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 0.00 4.09
3457 3640 7.393841 AAGTAGTAGTGATCTAAACGCTCTT 57.606 36.000 0.00 0.00 0.00 2.85
3458 3641 8.503458 AAGTAGTAGTGATCTAAACGCTCTTA 57.497 34.615 0.00 0.00 0.00 2.10
3459 3642 8.680039 AGTAGTAGTGATCTAAACGCTCTTAT 57.320 34.615 0.00 0.00 0.00 1.73
3460 3643 9.122779 AGTAGTAGTGATCTAAACGCTCTTATT 57.877 33.333 0.00 0.00 0.00 1.40
3461 3644 9.733219 GTAGTAGTGATCTAAACGCTCTTATTT 57.267 33.333 0.00 0.00 0.00 1.40
3463 3646 9.654663 AGTAGTGATCTAAACGCTCTTATTTTT 57.345 29.630 0.00 0.00 0.00 1.94
3464 3647 9.903185 GTAGTGATCTAAACGCTCTTATTTTTC 57.097 33.333 0.00 0.00 0.00 2.29
3465 3648 8.779354 AGTGATCTAAACGCTCTTATTTTTCT 57.221 30.769 0.00 0.00 0.00 2.52
3466 3649 9.220767 AGTGATCTAAACGCTCTTATTTTTCTT 57.779 29.630 0.00 0.00 0.00 2.52
3467 3650 9.827411 GTGATCTAAACGCTCTTATTTTTCTTT 57.173 29.630 0.00 0.00 0.00 2.52
3474 3657 8.603242 AACGCTCTTATTTTTCTTTACAGAGA 57.397 30.769 0.00 0.00 0.00 3.10
3475 3658 8.245701 ACGCTCTTATTTTTCTTTACAGAGAG 57.754 34.615 0.00 0.00 34.15 3.20
3476 3659 7.873505 ACGCTCTTATTTTTCTTTACAGAGAGT 59.126 33.333 0.00 0.00 35.79 3.24
3535 3718 7.765695 TTCTAAAACAAAGAGGCATTCTCAT 57.234 32.000 0.00 0.00 44.81 2.90
3610 3793 1.616994 GCAAATTGCCTACCTCCAGGT 60.617 52.381 6.72 3.17 44.19 4.00
3664 3847 4.279145 TCCACTGTCTTCCTGGTATAGAC 58.721 47.826 14.86 14.86 38.96 2.59
3698 3881 8.837737 TCTCTGTTAGGATATATACTACTGCCT 58.162 37.037 3.99 0.00 0.00 4.75
3699 3882 9.116067 CTCTGTTAGGATATATACTACTGCCTC 57.884 40.741 3.99 0.00 0.00 4.70
3700 3883 8.053963 TCTGTTAGGATATATACTACTGCCTCC 58.946 40.741 3.99 0.00 0.00 4.30
3701 3884 6.827251 TGTTAGGATATATACTACTGCCTCCG 59.173 42.308 3.99 0.00 0.00 4.63
3702 3885 5.453866 AGGATATATACTACTGCCTCCGT 57.546 43.478 0.00 0.00 0.00 4.69
3703 3886 5.828871 AGGATATATACTACTGCCTCCGTT 58.171 41.667 0.00 0.00 0.00 4.44
3704 3887 5.887035 AGGATATATACTACTGCCTCCGTTC 59.113 44.000 0.00 0.00 0.00 3.95
3705 3888 5.067544 GGATATATACTACTGCCTCCGTTCC 59.932 48.000 0.00 0.00 0.00 3.62
3706 3889 2.154567 ATACTACTGCCTCCGTTCCA 57.845 50.000 0.00 0.00 0.00 3.53
3707 3890 1.927487 TACTACTGCCTCCGTTCCAA 58.073 50.000 0.00 0.00 0.00 3.53
3708 3891 1.053424 ACTACTGCCTCCGTTCCAAA 58.947 50.000 0.00 0.00 0.00 3.28
3709 3892 1.418637 ACTACTGCCTCCGTTCCAAAA 59.581 47.619 0.00 0.00 0.00 2.44
3710 3893 2.039879 ACTACTGCCTCCGTTCCAAAAT 59.960 45.455 0.00 0.00 0.00 1.82
3711 3894 2.871096 ACTGCCTCCGTTCCAAAATA 57.129 45.000 0.00 0.00 0.00 1.40
3712 3895 3.149005 ACTGCCTCCGTTCCAAAATAA 57.851 42.857 0.00 0.00 0.00 1.40
3713 3896 3.081804 ACTGCCTCCGTTCCAAAATAAG 58.918 45.455 0.00 0.00 0.00 1.73
3714 3897 1.816224 TGCCTCCGTTCCAAAATAAGC 59.184 47.619 0.00 0.00 0.00 3.09
3715 3898 1.202143 GCCTCCGTTCCAAAATAAGCG 60.202 52.381 0.00 0.00 0.00 4.68
3716 3899 2.081462 CCTCCGTTCCAAAATAAGCGT 58.919 47.619 0.00 0.00 0.00 5.07
3717 3900 2.095372 CCTCCGTTCCAAAATAAGCGTC 59.905 50.000 0.00 0.00 0.00 5.19
3718 3901 1.727880 TCCGTTCCAAAATAAGCGTCG 59.272 47.619 0.00 0.00 0.00 5.12
3719 3902 1.461897 CCGTTCCAAAATAAGCGTCGT 59.538 47.619 0.00 0.00 0.00 4.34
3720 3903 2.492001 CGTTCCAAAATAAGCGTCGTG 58.508 47.619 0.00 0.00 0.00 4.35
3721 3904 2.156117 CGTTCCAAAATAAGCGTCGTGA 59.844 45.455 0.00 0.00 0.00 4.35
3722 3905 3.181524 CGTTCCAAAATAAGCGTCGTGAT 60.182 43.478 0.00 0.00 0.00 3.06
3723 3906 4.668177 CGTTCCAAAATAAGCGTCGTGATT 60.668 41.667 0.00 0.00 0.00 2.57
3724 3907 5.151389 GTTCCAAAATAAGCGTCGTGATTT 58.849 37.500 0.00 0.00 0.00 2.17
3725 3908 5.365403 TCCAAAATAAGCGTCGTGATTTT 57.635 34.783 0.00 1.59 32.97 1.82
3726 3909 6.483385 TCCAAAATAAGCGTCGTGATTTTA 57.517 33.333 11.12 0.00 31.86 1.52
3727 3910 6.539324 TCCAAAATAAGCGTCGTGATTTTAG 58.461 36.000 11.12 6.86 31.86 1.85
3728 3911 6.148150 TCCAAAATAAGCGTCGTGATTTTAGT 59.852 34.615 11.12 0.00 31.86 2.24
3729 3912 6.799925 CCAAAATAAGCGTCGTGATTTTAGTT 59.200 34.615 11.12 0.79 31.86 2.24
3730 3913 7.007099 CCAAAATAAGCGTCGTGATTTTAGTTC 59.993 37.037 11.12 0.00 31.86 3.01
3731 3914 6.963049 AATAAGCGTCGTGATTTTAGTTCT 57.037 33.333 0.00 0.00 0.00 3.01
3732 3915 6.963049 ATAAGCGTCGTGATTTTAGTTCTT 57.037 33.333 0.00 0.00 0.00 2.52
3733 3916 4.647291 AGCGTCGTGATTTTAGTTCTTG 57.353 40.909 0.00 0.00 0.00 3.02
3734 3917 4.304110 AGCGTCGTGATTTTAGTTCTTGA 58.696 39.130 0.00 0.00 0.00 3.02
3735 3918 4.748102 AGCGTCGTGATTTTAGTTCTTGAA 59.252 37.500 0.00 0.00 0.00 2.69
3736 3919 4.839174 GCGTCGTGATTTTAGTTCTTGAAC 59.161 41.667 5.44 5.44 0.00 3.18
3737 3920 5.333111 GCGTCGTGATTTTAGTTCTTGAACT 60.333 40.000 18.32 18.32 36.82 3.01
3738 3921 6.129009 GCGTCGTGATTTTAGTTCTTGAACTA 60.129 38.462 16.50 16.50 34.37 2.24
3739 3922 7.568134 GCGTCGTGATTTTAGTTCTTGAACTAA 60.568 37.037 23.91 23.91 41.86 2.24
3747 3930 7.846644 TTTAGTTCTTGAACTAAAACCACGA 57.153 32.000 30.43 16.40 46.35 4.35
3748 3931 5.729974 AGTTCTTGAACTAAAACCACGAC 57.270 39.130 13.62 0.00 0.00 4.34
3749 3932 5.180271 AGTTCTTGAACTAAAACCACGACA 58.820 37.500 13.62 0.00 0.00 4.35
3750 3933 5.064325 AGTTCTTGAACTAAAACCACGACAC 59.936 40.000 13.62 0.00 0.00 3.67
3751 3934 4.761975 TCTTGAACTAAAACCACGACACT 58.238 39.130 0.00 0.00 0.00 3.55
3752 3935 5.180271 TCTTGAACTAAAACCACGACACTT 58.820 37.500 0.00 0.00 0.00 3.16
3753 3936 6.339730 TCTTGAACTAAAACCACGACACTTA 58.660 36.000 0.00 0.00 0.00 2.24
3754 3937 6.987992 TCTTGAACTAAAACCACGACACTTAT 59.012 34.615 0.00 0.00 0.00 1.73
3755 3938 7.496591 TCTTGAACTAAAACCACGACACTTATT 59.503 33.333 0.00 0.00 0.00 1.40
3756 3939 7.556733 TGAACTAAAACCACGACACTTATTT 57.443 32.000 0.00 0.00 0.00 1.40
3757 3940 7.987649 TGAACTAAAACCACGACACTTATTTT 58.012 30.769 0.00 0.00 0.00 1.82
3758 3941 7.911205 TGAACTAAAACCACGACACTTATTTTG 59.089 33.333 0.00 0.00 0.00 2.44
3759 3942 6.731164 ACTAAAACCACGACACTTATTTTGG 58.269 36.000 0.00 0.00 0.00 3.28
3760 3943 5.838531 AAAACCACGACACTTATTTTGGA 57.161 34.783 0.00 0.00 0.00 3.53
3761 3944 5.838531 AAACCACGACACTTATTTTGGAA 57.161 34.783 0.00 0.00 0.00 3.53
3762 3945 4.823790 ACCACGACACTTATTTTGGAAC 57.176 40.909 0.00 0.00 0.00 3.62
3763 3946 3.249080 ACCACGACACTTATTTTGGAACG 59.751 43.478 0.00 0.00 0.00 3.95
3764 3947 3.364565 CCACGACACTTATTTTGGAACGG 60.365 47.826 0.00 0.00 0.00 4.44
3765 3948 3.495377 CACGACACTTATTTTGGAACGGA 59.505 43.478 0.00 0.00 0.00 4.69
3766 3949 3.744426 ACGACACTTATTTTGGAACGGAG 59.256 43.478 0.00 0.00 0.00 4.63
3767 3950 3.124636 CGACACTTATTTTGGAACGGAGG 59.875 47.826 0.00 0.00 0.00 4.30
3768 3951 3.418047 ACACTTATTTTGGAACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
3769 3952 3.073356 ACACTTATTTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
3770 3953 3.689649 CACTTATTTTGGAACGGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
3771 3954 3.329814 ACTTATTTTGGAACGGAGGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
3772 3955 4.533311 ACTTATTTTGGAACGGAGGGAGTA 59.467 41.667 0.00 0.00 0.00 2.59
3841 4024 5.634859 GGTGCTCCAGTGTTTGATAAAAATG 59.365 40.000 0.00 0.00 0.00 2.32
3939 4122 5.416083 GTGTCAGTGGTATACTTATGCACA 58.584 41.667 2.25 3.83 37.60 4.57
3940 4123 6.049149 GTGTCAGTGGTATACTTATGCACAT 58.951 40.000 2.25 0.00 37.60 3.21
3941 4124 6.018751 GTGTCAGTGGTATACTTATGCACATG 60.019 42.308 2.25 0.00 37.60 3.21
3942 4125 5.466728 GTCAGTGGTATACTTATGCACATGG 59.533 44.000 2.25 0.00 37.60 3.66
3943 4126 5.365314 TCAGTGGTATACTTATGCACATGGA 59.635 40.000 2.25 0.00 37.60 3.41
3944 4127 6.054941 CAGTGGTATACTTATGCACATGGAA 58.945 40.000 2.25 0.00 37.60 3.53
3945 4128 6.712095 CAGTGGTATACTTATGCACATGGAAT 59.288 38.462 2.25 0.00 37.60 3.01
3946 4129 6.712095 AGTGGTATACTTATGCACATGGAATG 59.288 38.462 2.25 0.00 43.93 2.67
4096 4279 4.393680 ACAAAAGTGCAGACAGTAAAACGA 59.606 37.500 0.00 0.00 0.00 3.85
4157 4340 7.987458 TGTCTCTAATTTAGCCAATGACCTTAG 59.013 37.037 0.00 0.00 0.00 2.18
4718 4907 7.703058 ACCATAGTTTCCAAAATAGTTCCTG 57.297 36.000 0.00 0.00 0.00 3.86
4815 5004 2.034812 GGCTGTAGGTCTATGTTCCTCG 59.965 54.545 0.00 0.00 35.51 4.63
4995 5184 2.224769 ACATGGTCGAATGGTTGGACTT 60.225 45.455 0.00 0.00 38.31 3.01
5148 5337 1.946768 TCTTGGTGTTTTCCTGCTTCG 59.053 47.619 0.00 0.00 0.00 3.79
5219 5408 4.150897 ACTGTCTTTGCAGTCACCTTAA 57.849 40.909 0.00 0.00 45.63 1.85
5245 5434 2.725221 AGATTCTAGCAAAGGCCCAG 57.275 50.000 0.00 0.00 42.56 4.45
5261 5450 1.942657 CCCAGCATACTCGTTTCCATG 59.057 52.381 0.00 0.00 0.00 3.66
5396 5585 2.991190 GCAGGTGCTTGTTCAAATCATG 59.009 45.455 0.00 0.00 38.21 3.07
5690 5879 5.243954 GGCTTTCCTTAAACACAAGATTCCT 59.756 40.000 0.00 0.00 0.00 3.36
5892 6081 2.690653 TTTGGCCTGCCGCTACAAGT 62.691 55.000 3.32 0.00 39.42 3.16
5909 6098 3.997021 ACAAGTCCTTCAAAGCATACTCG 59.003 43.478 0.00 0.00 0.00 4.18
5953 6142 3.375299 GCCTGTCGCTAATGAATGAGTTT 59.625 43.478 0.00 0.00 0.00 2.66
5954 6143 4.142600 GCCTGTCGCTAATGAATGAGTTTT 60.143 41.667 0.00 0.00 0.00 2.43
5955 6144 5.619981 GCCTGTCGCTAATGAATGAGTTTTT 60.620 40.000 0.00 0.00 0.00 1.94
5957 6146 6.128172 CCTGTCGCTAATGAATGAGTTTTTCT 60.128 38.462 0.00 0.00 0.00 2.52
6036 6227 8.911662 GTTACAATAGCGTGTTGAATTTGATTT 58.088 29.630 5.90 0.00 32.75 2.17
6037 6228 7.337150 ACAATAGCGTGTTGAATTTGATTTG 57.663 32.000 5.90 0.00 0.00 2.32
6149 6340 2.671396 CGTGAGTTGTACTACCAATGCC 59.329 50.000 3.72 0.00 0.00 4.40
6154 6345 5.472137 TGAGTTGTACTACCAATGCCTTTTC 59.528 40.000 3.72 0.00 0.00 2.29
6157 6348 4.980573 TGTACTACCAATGCCTTTTCAGT 58.019 39.130 0.00 0.00 0.00 3.41
6159 6350 4.098914 ACTACCAATGCCTTTTCAGTGA 57.901 40.909 0.00 0.00 34.31 3.41
6183 6374 3.244078 TGCAGTTAGTCTGAAACCATCGT 60.244 43.478 0.00 0.00 46.27 3.73
6204 6395 9.003112 CATCGTCATGTTTTCTGATTCATTTAC 57.997 33.333 0.00 0.00 0.00 2.01
6273 6464 6.073314 ACCAATCTGGGATTTTGATATCCTG 58.927 40.000 0.00 0.00 43.37 3.86
6291 6482 2.002586 CTGCTACCACACATTTCCTCG 58.997 52.381 0.00 0.00 0.00 4.63
6315 6506 6.289901 GCGCTATCGTAGTGATAAAAATGAC 58.710 40.000 0.00 0.00 39.06 3.06
6376 6570 7.531534 GCGAAATAACGTTATACAGTGTTTGTT 59.468 33.333 20.62 7.62 37.12 2.83
6437 6631 2.950309 ACACGTCCTCTTATCATACGCT 59.050 45.455 0.00 0.00 37.07 5.07
6464 6658 5.474578 AGTGATGTAAGACTGAGCTTCAA 57.525 39.130 0.00 0.00 0.00 2.69
6475 6669 3.056107 ACTGAGCTTCAATGCCGTAACTA 60.056 43.478 0.00 0.00 0.00 2.24
6479 6673 2.351726 GCTTCAATGCCGTAACTACAGG 59.648 50.000 0.00 0.00 0.00 4.00
6506 6700 1.376466 GGTCAGTGACATGTGGGCT 59.624 57.895 24.20 0.00 33.68 5.19
6530 6724 0.742281 AGCAGCAGTTAGGCATCACG 60.742 55.000 0.00 0.00 35.83 4.35
6563 6757 4.211794 GGGCATTGAAAACAATGAACAGTG 59.788 41.667 21.74 0.74 43.26 3.66
6567 6761 6.346040 GCATTGAAAACAATGAACAGTGTAGC 60.346 38.462 21.74 2.69 43.26 3.58
6569 6763 6.060028 TGAAAACAATGAACAGTGTAGCTC 57.940 37.500 8.24 6.40 38.83 4.09
6580 6774 2.427453 CAGTGTAGCTCGACAATACCCT 59.573 50.000 0.00 0.00 0.00 4.34
6664 6859 0.905357 ATCCTTCACCAGTCGGGAAG 59.095 55.000 0.00 0.00 41.15 3.46
6680 6875 3.181461 CGGGAAGATAAGGTCAATCTGCT 60.181 47.826 0.00 0.00 33.95 4.24
6702 6897 9.950680 CTGCTTTTACAATGTAAGAAGAAGAAA 57.049 29.630 19.82 6.43 27.66 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.202101 ACCGATGCAAACAAATTCACTCAA 60.202 37.500 0.00 0.00 0.00 3.02
1 2 3.317711 ACCGATGCAAACAAATTCACTCA 59.682 39.130 0.00 0.00 0.00 3.41
4 5 5.402464 AAAACCGATGCAAACAAATTCAC 57.598 34.783 0.00 0.00 0.00 3.18
5 6 4.208047 CGAAAACCGATGCAAACAAATTCA 59.792 37.500 0.00 0.00 41.76 2.57
6 7 4.208253 ACGAAAACCGATGCAAACAAATTC 59.792 37.500 0.00 0.00 41.76 2.17
7 8 4.116238 ACGAAAACCGATGCAAACAAATT 58.884 34.783 0.00 0.00 41.76 1.82
8 9 3.712187 ACGAAAACCGATGCAAACAAAT 58.288 36.364 0.00 0.00 41.76 2.32
9 10 3.109619 GACGAAAACCGATGCAAACAAA 58.890 40.909 0.00 0.00 41.76 2.83
10 11 2.356382 AGACGAAAACCGATGCAAACAA 59.644 40.909 0.00 0.00 41.76 2.83
11 12 1.944024 AGACGAAAACCGATGCAAACA 59.056 42.857 0.00 0.00 41.76 2.83
12 13 2.307049 CAGACGAAAACCGATGCAAAC 58.693 47.619 0.00 0.00 41.76 2.93
13 14 1.265635 CCAGACGAAAACCGATGCAAA 59.734 47.619 0.00 0.00 41.76 3.68
14 15 0.871722 CCAGACGAAAACCGATGCAA 59.128 50.000 0.00 0.00 41.76 4.08
15 16 0.250124 ACCAGACGAAAACCGATGCA 60.250 50.000 0.00 0.00 41.76 3.96
16 17 0.872388 AACCAGACGAAAACCGATGC 59.128 50.000 0.00 0.00 41.76 3.91
17 18 3.619233 AAAACCAGACGAAAACCGATG 57.381 42.857 0.00 0.00 41.76 3.84
42 43 9.875691 GAAAGAAAAGAATTGCCAGGTTAATAT 57.124 29.630 0.00 0.00 0.00 1.28
43 44 8.026607 CGAAAGAAAAGAATTGCCAGGTTAATA 58.973 33.333 0.00 0.00 0.00 0.98
44 45 6.868339 CGAAAGAAAAGAATTGCCAGGTTAAT 59.132 34.615 0.00 0.00 0.00 1.40
45 46 6.039941 TCGAAAGAAAAGAATTGCCAGGTTAA 59.960 34.615 0.00 0.00 37.03 2.01
46 47 5.533154 TCGAAAGAAAAGAATTGCCAGGTTA 59.467 36.000 0.00 0.00 37.03 2.85
47 48 4.340950 TCGAAAGAAAAGAATTGCCAGGTT 59.659 37.500 0.00 0.00 37.03 3.50
48 49 3.888930 TCGAAAGAAAAGAATTGCCAGGT 59.111 39.130 0.00 0.00 37.03 4.00
49 50 4.503741 TCGAAAGAAAAGAATTGCCAGG 57.496 40.909 0.00 0.00 37.03 4.45
83 84 0.958822 ACGTTGGCAAAAGGATCACC 59.041 50.000 0.00 0.00 0.00 4.02
84 85 2.793278 AACGTTGGCAAAAGGATCAC 57.207 45.000 0.00 0.00 0.00 3.06
85 86 3.810310 AAAACGTTGGCAAAAGGATCA 57.190 38.095 0.00 0.00 0.00 2.92
86 87 3.247411 CCAAAAACGTTGGCAAAAGGATC 59.753 43.478 0.00 0.00 32.18 3.36
87 88 3.202097 CCAAAAACGTTGGCAAAAGGAT 58.798 40.909 0.00 0.00 32.18 3.24
88 89 2.622436 CCAAAAACGTTGGCAAAAGGA 58.378 42.857 0.00 0.00 32.18 3.36
89 90 1.668237 CCCAAAAACGTTGGCAAAAGG 59.332 47.619 0.00 0.00 38.23 3.11
90 91 1.668237 CCCCAAAAACGTTGGCAAAAG 59.332 47.619 0.00 1.45 38.23 2.27
91 92 1.679032 CCCCCAAAAACGTTGGCAAAA 60.679 47.619 0.00 0.00 38.23 2.44
92 93 0.107654 CCCCCAAAAACGTTGGCAAA 60.108 50.000 0.00 0.00 38.23 3.68
93 94 0.976073 TCCCCCAAAAACGTTGGCAA 60.976 50.000 0.00 0.00 38.23 4.52
94 95 0.976073 TTCCCCCAAAAACGTTGGCA 60.976 50.000 0.00 0.00 38.23 4.92
95 96 0.178301 TTTCCCCCAAAAACGTTGGC 59.822 50.000 0.00 0.00 38.23 4.52
96 97 2.693267 TTTTCCCCCAAAAACGTTGG 57.307 45.000 0.00 0.00 39.25 3.77
97 98 4.212425 GCTATTTTTCCCCCAAAAACGTTG 59.788 41.667 0.00 0.00 44.89 4.10
98 99 4.382291 GCTATTTTTCCCCCAAAAACGTT 58.618 39.130 0.00 0.00 44.89 3.99
99 100 3.244284 GGCTATTTTTCCCCCAAAAACGT 60.244 43.478 0.00 0.00 44.89 3.99
100 101 3.331150 GGCTATTTTTCCCCCAAAAACG 58.669 45.455 0.00 0.00 44.89 3.60
101 102 3.331150 CGGCTATTTTTCCCCCAAAAAC 58.669 45.455 0.00 0.00 44.89 2.43
102 103 2.303311 CCGGCTATTTTTCCCCCAAAAA 59.697 45.455 0.00 0.00 45.88 1.94
103 104 1.903183 CCGGCTATTTTTCCCCCAAAA 59.097 47.619 0.00 0.00 31.73 2.44
104 105 1.203199 ACCGGCTATTTTTCCCCCAAA 60.203 47.619 0.00 0.00 0.00 3.28
105 106 0.410270 ACCGGCTATTTTTCCCCCAA 59.590 50.000 0.00 0.00 0.00 4.12
106 107 1.296984 TACCGGCTATTTTTCCCCCA 58.703 50.000 0.00 0.00 0.00 4.96
107 108 2.026641 GTTACCGGCTATTTTTCCCCC 58.973 52.381 0.00 0.00 0.00 5.40
108 109 1.672363 CGTTACCGGCTATTTTTCCCC 59.328 52.381 0.00 0.00 0.00 4.81
109 110 1.064505 GCGTTACCGGCTATTTTTCCC 59.935 52.381 0.00 0.00 33.68 3.97
110 111 1.738908 TGCGTTACCGGCTATTTTTCC 59.261 47.619 0.00 0.00 33.68 3.13
111 112 3.359654 CATGCGTTACCGGCTATTTTTC 58.640 45.455 0.00 0.00 33.68 2.29
112 113 2.098443 CCATGCGTTACCGGCTATTTTT 59.902 45.455 0.00 0.00 33.68 1.94
113 114 1.673920 CCATGCGTTACCGGCTATTTT 59.326 47.619 0.00 0.00 33.68 1.82
114 115 1.305201 CCATGCGTTACCGGCTATTT 58.695 50.000 0.00 0.00 33.68 1.40
115 116 1.164041 GCCATGCGTTACCGGCTATT 61.164 55.000 0.00 0.00 41.50 1.73
116 117 1.597027 GCCATGCGTTACCGGCTAT 60.597 57.895 0.00 0.00 41.50 2.97
117 118 2.202960 GCCATGCGTTACCGGCTA 60.203 61.111 0.00 0.00 41.50 3.93
119 120 2.202960 TAGCCATGCGTTACCGGC 60.203 61.111 0.00 0.00 45.23 6.13
120 121 0.386476 TAGTAGCCATGCGTTACCGG 59.614 55.000 0.00 0.00 33.68 5.28
121 122 2.124903 CTTAGTAGCCATGCGTTACCG 58.875 52.381 0.00 0.00 37.07 4.02
122 123 2.101917 TCCTTAGTAGCCATGCGTTACC 59.898 50.000 0.00 0.00 0.00 2.85
123 124 3.447918 TCCTTAGTAGCCATGCGTTAC 57.552 47.619 0.00 0.00 0.00 2.50
124 125 3.244078 CCATCCTTAGTAGCCATGCGTTA 60.244 47.826 0.00 0.00 0.00 3.18
125 126 2.485479 CCATCCTTAGTAGCCATGCGTT 60.485 50.000 0.00 0.00 0.00 4.84
126 127 1.070758 CCATCCTTAGTAGCCATGCGT 59.929 52.381 0.00 0.00 0.00 5.24
127 128 1.800805 CCATCCTTAGTAGCCATGCG 58.199 55.000 0.00 0.00 0.00 4.73
128 129 1.202806 TGCCATCCTTAGTAGCCATGC 60.203 52.381 0.00 0.00 0.00 4.06
129 130 2.936919 TGCCATCCTTAGTAGCCATG 57.063 50.000 0.00 0.00 0.00 3.66
130 131 4.459852 AATTGCCATCCTTAGTAGCCAT 57.540 40.909 0.00 0.00 0.00 4.40
131 132 3.951563 AATTGCCATCCTTAGTAGCCA 57.048 42.857 0.00 0.00 0.00 4.75
132 133 6.071896 GGATAAAATTGCCATCCTTAGTAGCC 60.072 42.308 6.14 0.00 36.17 3.93
133 134 6.490040 TGGATAAAATTGCCATCCTTAGTAGC 59.510 38.462 12.15 0.00 39.24 3.58
172 173 0.320374 TTCGGGTCGGATATCCATGC 59.680 55.000 21.70 10.12 35.14 4.06
583 587 0.396556 TCACCTCGTGGCAGGCTATA 60.397 55.000 2.76 0.00 36.98 1.31
708 712 2.702478 TCCATGGGTGAAAAATTGTGCA 59.298 40.909 13.02 0.00 0.00 4.57
736 741 2.560542 AGACAATTTTTGCACGCCCATA 59.439 40.909 0.00 0.00 0.00 2.74
744 749 8.747471 TCCATATGTATGAAGACAATTTTTGCA 58.253 29.630 1.24 0.00 35.75 4.08
819 824 1.903860 ACACCCGTGTAGCCATTAAGA 59.096 47.619 0.00 0.00 42.90 2.10
825 830 2.638354 CCGTACACCCGTGTAGCCA 61.638 63.158 7.93 0.00 45.61 4.75
848 853 1.002990 CGGCCGACTTTTTACCCCT 60.003 57.895 24.07 0.00 0.00 4.79
849 854 2.042259 CCGGCCGACTTTTTACCCC 61.042 63.158 30.73 0.00 0.00 4.95
851 856 2.042259 CCCCGGCCGACTTTTTACC 61.042 63.158 30.73 0.00 0.00 2.85
853 858 0.321830 CTTCCCCGGCCGACTTTTTA 60.322 55.000 30.73 3.81 0.00 1.52
938 947 3.699067 CTGACTTTGTTTGCTGGTTGAG 58.301 45.455 0.00 0.00 0.00 3.02
1121 1130 2.849096 TAGCGGGAAAGCTCGGGAGA 62.849 60.000 0.00 0.00 45.67 3.71
1181 1190 4.393155 TGGCGGCGCATCTTGACT 62.393 61.111 34.36 0.00 0.00 3.41
1242 1251 2.158957 CGAGGAAATTGAGGAATCGGGA 60.159 50.000 0.00 0.00 0.00 5.14
1243 1252 2.213499 CGAGGAAATTGAGGAATCGGG 58.787 52.381 0.00 0.00 0.00 5.14
1268 1277 2.602878 GTCACACGATTAGGCTCGAAA 58.397 47.619 1.39 0.00 41.12 3.46
1283 1292 0.754957 CCAAACCAAGGCAGGTCACA 60.755 55.000 1.96 0.00 42.25 3.58
1372 1381 3.124921 GCTAGAAGCGGCGGCAAA 61.125 61.111 19.21 0.00 43.41 3.68
1384 1393 1.504900 CGCGCATATACGGGCTAGA 59.495 57.895 8.75 0.00 42.32 2.43
1503 1512 2.335369 GTGTGAGCACGAGACGGT 59.665 61.111 0.00 0.00 35.75 4.83
1527 1540 0.674895 GCGCCAGAATCACCTCAACT 60.675 55.000 0.00 0.00 0.00 3.16
1528 1541 0.674895 AGCGCCAGAATCACCTCAAC 60.675 55.000 2.29 0.00 0.00 3.18
1532 1545 1.220206 CTCAGCGCCAGAATCACCT 59.780 57.895 2.29 0.00 0.00 4.00
1544 1557 3.782244 GCAACGAGCACCTCAGCG 61.782 66.667 0.00 0.00 44.79 5.18
1556 1569 0.813184 AGGCATTCCATCAAGCAACG 59.187 50.000 0.00 0.00 33.74 4.10
1581 1594 2.101917 GGTATTAACCTCGGCTGCAGTA 59.898 50.000 16.64 0.23 43.08 2.74
1598 1611 2.835705 CGAGACGCGCCTCTGGTAT 61.836 63.158 20.28 0.00 0.00 2.73
1603 1616 3.134792 ACATCGAGACGCGCCTCT 61.135 61.111 20.28 10.04 40.61 3.69
1615 1628 2.534298 CTCACCTCAACTAGCACATCG 58.466 52.381 0.00 0.00 0.00 3.84
1643 1656 4.882842 ACAAAAACACAAGGTCTTTGGT 57.117 36.364 0.00 0.00 41.25 3.67
1644 1657 4.994217 ACAACAAAAACACAAGGTCTTTGG 59.006 37.500 0.00 0.00 41.25 3.28
1647 1660 6.334102 TGTACAACAAAAACACAAGGTCTT 57.666 33.333 0.00 0.00 0.00 3.01
1648 1661 5.968528 TGTACAACAAAAACACAAGGTCT 57.031 34.783 0.00 0.00 0.00 3.85
1681 1694 6.324561 TGCAAGTGTGAATAATTAGCACAA 57.675 33.333 19.54 6.88 43.33 3.33
1730 1744 7.603784 CACATATTTCTTTCTTTTTCAAGGGGG 59.396 37.037 0.00 0.00 0.00 5.40
1855 1877 7.775561 GTCCCATTGGTCTGAAGTCTTAATTAT 59.224 37.037 1.20 0.00 0.00 1.28
1857 1879 5.946377 GTCCCATTGGTCTGAAGTCTTAATT 59.054 40.000 1.20 0.00 0.00 1.40
1891 1913 0.249911 CCGCTAATCCTACAGCCCAC 60.250 60.000 0.00 0.00 34.15 4.61
2051 2075 4.100653 TCCAGAATCTCCATGTCTGATGTC 59.899 45.833 10.91 4.09 41.08 3.06
2163 2187 7.384477 ACTACACTAGAATCTGGGTAAACAAC 58.616 38.462 0.00 0.00 0.00 3.32
2260 2289 4.589216 TCTTTCAGTGAAAAATGGCAGG 57.411 40.909 18.55 5.48 30.84 4.85
2281 2366 6.884836 CCTTTCCTATTACCAAGTAGCACTTT 59.115 38.462 0.00 0.00 36.03 2.66
2307 2392 6.371809 AATTATGTATGCCCACTTTGTACG 57.628 37.500 0.00 0.00 0.00 3.67
2566 2655 8.731275 TCATATGTTAACAAGGATAACACAGG 57.269 34.615 13.23 0.00 43.74 4.00
2717 2806 6.000246 TCAACCTGATAATGGCTGATAACA 58.000 37.500 0.00 0.00 0.00 2.41
2783 2872 1.415659 GGGTCAGCAGACTCAGCATAT 59.584 52.381 9.29 0.00 44.96 1.78
2797 2886 3.003394 TGGCTATTGTTGATGGGTCAG 57.997 47.619 0.00 0.00 35.39 3.51
2834 2923 1.332375 GCTGAGACTCCTAGTACAGCG 59.668 57.143 16.84 0.00 43.24 5.18
3148 3238 9.681692 CACTGATGAATATTTTCAACTGTTTGA 57.318 29.630 13.02 0.00 44.70 2.69
3149 3239 9.467258 ACACTGATGAATATTTTCAACTGTTTG 57.533 29.630 13.02 8.15 44.70 2.93
3296 3478 6.349300 TCAAACAGAATTAGACTATCCCTGC 58.651 40.000 0.00 0.00 0.00 4.85
3332 3515 4.522789 ACAATGAATAAGCCTTCACGGTTT 59.477 37.500 0.00 0.00 37.93 3.27
3334 3517 3.686016 ACAATGAATAAGCCTTCACGGT 58.314 40.909 0.00 0.00 37.93 4.83
3383 3566 1.749634 ACGGAGGGAGTATGTCTTTCG 59.250 52.381 0.00 0.00 0.00 3.46
3393 3576 7.564292 ACTCTTATATTTCTTTACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
3394 3577 7.868415 CACTCTTATATTTCTTTACGGAGGGAG 59.132 40.741 0.00 0.00 0.00 4.30
3395 3578 7.343833 ACACTCTTATATTTCTTTACGGAGGGA 59.656 37.037 0.00 0.00 0.00 4.20
3396 3579 7.498443 ACACTCTTATATTTCTTTACGGAGGG 58.502 38.462 0.00 0.00 0.00 4.30
3397 3580 8.943909 AACACTCTTATATTTCTTTACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
3429 3612 8.278729 AGCGTTTAGATCACTACTACTTTAGT 57.721 34.615 0.00 0.00 42.68 2.24
3430 3613 8.614346 AGAGCGTTTAGATCACTACTACTTTAG 58.386 37.037 0.00 0.00 37.82 1.85
3431 3614 8.503458 AGAGCGTTTAGATCACTACTACTTTA 57.497 34.615 0.00 0.00 37.82 1.85
3432 3615 7.393841 AGAGCGTTTAGATCACTACTACTTT 57.606 36.000 0.00 0.00 37.82 2.66
3433 3616 7.393841 AAGAGCGTTTAGATCACTACTACTT 57.606 36.000 0.00 0.00 37.82 2.24
3434 3617 8.680039 ATAAGAGCGTTTAGATCACTACTACT 57.320 34.615 0.00 0.00 37.82 2.57
3435 3618 9.733219 AAATAAGAGCGTTTAGATCACTACTAC 57.267 33.333 0.00 0.00 37.82 2.73
3437 3620 9.654663 AAAAATAAGAGCGTTTAGATCACTACT 57.345 29.630 0.00 0.00 37.82 2.57
3438 3621 9.903185 GAAAAATAAGAGCGTTTAGATCACTAC 57.097 33.333 0.00 0.00 37.82 2.73
3439 3622 9.871238 AGAAAAATAAGAGCGTTTAGATCACTA 57.129 29.630 0.00 0.00 37.82 2.74
3440 3623 8.779354 AGAAAAATAAGAGCGTTTAGATCACT 57.221 30.769 0.00 0.00 37.82 3.41
3441 3624 9.827411 AAAGAAAAATAAGAGCGTTTAGATCAC 57.173 29.630 0.00 0.00 37.82 3.06
3448 3631 9.052759 TCTCTGTAAAGAAAAATAAGAGCGTTT 57.947 29.630 0.00 0.00 31.76 3.60
3449 3632 8.603242 TCTCTGTAAAGAAAAATAAGAGCGTT 57.397 30.769 0.00 0.00 31.76 4.84
3450 3633 7.873505 ACTCTCTGTAAAGAAAAATAAGAGCGT 59.126 33.333 0.00 0.00 32.82 5.07
3451 3634 8.245701 ACTCTCTGTAAAGAAAAATAAGAGCG 57.754 34.615 0.00 0.00 32.82 5.03
3457 3640 9.944376 AGCATGTACTCTCTGTAAAGAAAAATA 57.056 29.630 0.00 0.00 32.25 1.40
3458 3641 8.854614 AGCATGTACTCTCTGTAAAGAAAAAT 57.145 30.769 0.00 0.00 32.25 1.82
3459 3642 9.944376 ATAGCATGTACTCTCTGTAAAGAAAAA 57.056 29.630 0.00 0.00 32.25 1.94
3460 3643 9.944376 AATAGCATGTACTCTCTGTAAAGAAAA 57.056 29.630 0.00 0.00 32.25 2.29
3464 3647 9.632807 GGATAATAGCATGTACTCTCTGTAAAG 57.367 37.037 0.00 0.00 32.25 1.85
3465 3648 9.143155 TGGATAATAGCATGTACTCTCTGTAAA 57.857 33.333 0.00 0.00 32.25 2.01
3466 3649 8.577296 GTGGATAATAGCATGTACTCTCTGTAA 58.423 37.037 0.00 0.00 32.25 2.41
3467 3650 7.945109 AGTGGATAATAGCATGTACTCTCTGTA 59.055 37.037 0.00 0.00 0.00 2.74
3468 3651 6.780031 AGTGGATAATAGCATGTACTCTCTGT 59.220 38.462 0.00 0.00 0.00 3.41
3469 3652 7.225784 AGTGGATAATAGCATGTACTCTCTG 57.774 40.000 0.00 0.00 0.00 3.35
3470 3653 7.847711 AAGTGGATAATAGCATGTACTCTCT 57.152 36.000 0.00 0.00 0.00 3.10
3563 3746 5.817296 CAGCACCAACTGATATACTGCTTAA 59.183 40.000 0.00 0.00 40.25 1.85
3610 3793 2.993840 AGCGAGCTCCTGACAGCA 60.994 61.111 8.47 0.00 42.40 4.41
3693 3876 2.159379 GCTTATTTTGGAACGGAGGCAG 60.159 50.000 0.00 0.00 0.00 4.85
3696 3879 2.081462 ACGCTTATTTTGGAACGGAGG 58.919 47.619 0.00 0.00 0.00 4.30
3698 3881 1.727880 CGACGCTTATTTTGGAACGGA 59.272 47.619 0.00 0.00 0.00 4.69
3699 3882 1.461897 ACGACGCTTATTTTGGAACGG 59.538 47.619 0.00 0.00 0.00 4.44
3700 3883 2.156117 TCACGACGCTTATTTTGGAACG 59.844 45.455 0.00 0.00 0.00 3.95
3701 3884 3.799137 TCACGACGCTTATTTTGGAAC 57.201 42.857 0.00 0.00 0.00 3.62
3702 3885 5.365403 AAATCACGACGCTTATTTTGGAA 57.635 34.783 0.00 0.00 0.00 3.53
3703 3886 5.365403 AAAATCACGACGCTTATTTTGGA 57.635 34.783 12.04 0.00 31.99 3.53
3704 3887 6.311723 ACTAAAATCACGACGCTTATTTTGG 58.688 36.000 18.24 17.64 36.46 3.28
3705 3888 7.744715 AGAACTAAAATCACGACGCTTATTTTG 59.255 33.333 18.24 13.08 34.37 2.44
3706 3889 7.803724 AGAACTAAAATCACGACGCTTATTTT 58.196 30.769 15.33 15.33 36.04 1.82
3707 3890 7.360575 AGAACTAAAATCACGACGCTTATTT 57.639 32.000 0.00 0.00 0.00 1.40
3708 3891 6.963049 AGAACTAAAATCACGACGCTTATT 57.037 33.333 0.00 0.00 0.00 1.40
3709 3892 6.588756 TCAAGAACTAAAATCACGACGCTTAT 59.411 34.615 0.00 0.00 0.00 1.73
3710 3893 5.921976 TCAAGAACTAAAATCACGACGCTTA 59.078 36.000 0.00 0.00 0.00 3.09
3711 3894 4.748102 TCAAGAACTAAAATCACGACGCTT 59.252 37.500 0.00 0.00 0.00 4.68
3712 3895 4.304110 TCAAGAACTAAAATCACGACGCT 58.696 39.130 0.00 0.00 0.00 5.07
3713 3896 4.640805 TCAAGAACTAAAATCACGACGC 57.359 40.909 0.00 0.00 0.00 5.19
3727 3910 5.064325 AGTGTCGTGGTTTTAGTTCAAGAAC 59.936 40.000 4.82 4.82 41.45 3.01
3728 3911 5.180271 AGTGTCGTGGTTTTAGTTCAAGAA 58.820 37.500 0.00 0.00 0.00 2.52
3729 3912 4.761975 AGTGTCGTGGTTTTAGTTCAAGA 58.238 39.130 0.00 0.00 0.00 3.02
3730 3913 5.479716 AAGTGTCGTGGTTTTAGTTCAAG 57.520 39.130 0.00 0.00 0.00 3.02
3731 3914 7.556733 AATAAGTGTCGTGGTTTTAGTTCAA 57.443 32.000 0.00 0.00 0.00 2.69
3732 3915 7.556733 AAATAAGTGTCGTGGTTTTAGTTCA 57.443 32.000 0.00 0.00 0.00 3.18
3733 3916 7.377662 CCAAAATAAGTGTCGTGGTTTTAGTTC 59.622 37.037 0.00 0.00 0.00 3.01
3734 3917 7.067251 TCCAAAATAAGTGTCGTGGTTTTAGTT 59.933 33.333 0.00 0.00 0.00 2.24
3735 3918 6.543100 TCCAAAATAAGTGTCGTGGTTTTAGT 59.457 34.615 0.00 0.00 0.00 2.24
3736 3919 6.961576 TCCAAAATAAGTGTCGTGGTTTTAG 58.038 36.000 0.00 0.00 0.00 1.85
3737 3920 6.939132 TCCAAAATAAGTGTCGTGGTTTTA 57.061 33.333 0.00 0.00 0.00 1.52
3738 3921 5.838531 TCCAAAATAAGTGTCGTGGTTTT 57.161 34.783 0.00 0.00 0.00 2.43
3739 3922 5.584442 GTTCCAAAATAAGTGTCGTGGTTT 58.416 37.500 0.00 0.00 0.00 3.27
3740 3923 4.260866 CGTTCCAAAATAAGTGTCGTGGTT 60.261 41.667 0.00 0.00 0.00 3.67
3741 3924 3.249080 CGTTCCAAAATAAGTGTCGTGGT 59.751 43.478 0.00 0.00 0.00 4.16
3742 3925 3.364565 CCGTTCCAAAATAAGTGTCGTGG 60.365 47.826 0.00 0.00 0.00 4.94
3743 3926 3.495377 TCCGTTCCAAAATAAGTGTCGTG 59.505 43.478 0.00 0.00 0.00 4.35
3744 3927 3.731089 TCCGTTCCAAAATAAGTGTCGT 58.269 40.909 0.00 0.00 0.00 4.34
3745 3928 3.124636 CCTCCGTTCCAAAATAAGTGTCG 59.875 47.826 0.00 0.00 0.00 4.35
3746 3929 3.439129 CCCTCCGTTCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
3747 3930 3.073356 TCCCTCCGTTCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
3748 3931 3.681593 TCCCTCCGTTCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
3749 3932 3.329814 ACTCCCTCCGTTCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
3750 3933 3.951663 ACTCCCTCCGTTCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
3751 3934 5.190132 TCATACTCCCTCCGTTCCAAAATAA 59.810 40.000 0.00 0.00 0.00 1.40
3752 3935 4.717778 TCATACTCCCTCCGTTCCAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
3753 3936 3.521937 TCATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
3754 3937 2.907696 TCATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
3755 3938 2.500098 CTCATACTCCCTCCGTTCCAAA 59.500 50.000 0.00 0.00 0.00 3.28
3756 3939 2.108168 CTCATACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
3757 3940 1.006758 ACTCATACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
3758 3941 1.682323 GACTCATACTCCCTCCGTTCC 59.318 57.143 0.00 0.00 0.00 3.62
3759 3942 2.359531 CTGACTCATACTCCCTCCGTTC 59.640 54.545 0.00 0.00 0.00 3.95
3760 3943 2.379972 CTGACTCATACTCCCTCCGTT 58.620 52.381 0.00 0.00 0.00 4.44
3761 3944 2.024825 GCTGACTCATACTCCCTCCGT 61.025 57.143 0.00 0.00 0.00 4.69
3762 3945 0.671251 GCTGACTCATACTCCCTCCG 59.329 60.000 0.00 0.00 0.00 4.63
3763 3946 1.686052 CAGCTGACTCATACTCCCTCC 59.314 57.143 8.42 0.00 0.00 4.30
3764 3947 2.383855 ACAGCTGACTCATACTCCCTC 58.616 52.381 23.35 0.00 0.00 4.30
3765 3948 2.541233 ACAGCTGACTCATACTCCCT 57.459 50.000 23.35 0.00 0.00 4.20
3766 3949 4.737855 TTAACAGCTGACTCATACTCCC 57.262 45.455 23.35 0.00 0.00 4.30
3767 3950 8.894768 AATTATTAACAGCTGACTCATACTCC 57.105 34.615 23.35 0.00 0.00 3.85
3841 4024 0.610232 AGCATCCCCACAAGACAAGC 60.610 55.000 0.00 0.00 0.00 4.01
3924 4107 7.148188 CCATCATTCCATGTGCATAAGTATACC 60.148 40.741 0.00 0.00 0.00 2.73
3925 4108 7.607607 TCCATCATTCCATGTGCATAAGTATAC 59.392 37.037 0.00 0.00 0.00 1.47
3933 4116 3.889538 CTCTTCCATCATTCCATGTGCAT 59.110 43.478 0.00 0.00 0.00 3.96
3939 4122 7.325725 TCACATATCTCTTCCATCATTCCAT 57.674 36.000 0.00 0.00 0.00 3.41
3940 4123 6.752285 TCACATATCTCTTCCATCATTCCA 57.248 37.500 0.00 0.00 0.00 3.53
3941 4124 7.222872 AGTTCACATATCTCTTCCATCATTCC 58.777 38.462 0.00 0.00 0.00 3.01
3942 4125 8.674263 AAGTTCACATATCTCTTCCATCATTC 57.326 34.615 0.00 0.00 0.00 2.67
3944 4127 9.775854 CTTAAGTTCACATATCTCTTCCATCAT 57.224 33.333 0.00 0.00 0.00 2.45
3945 4128 8.762645 ACTTAAGTTCACATATCTCTTCCATCA 58.237 33.333 1.12 0.00 0.00 3.07
4096 4279 2.759839 TCCATGCCACATGATTCCAT 57.240 45.000 9.10 0.00 0.00 3.41
4157 4340 4.811557 GTGAAGGTGGAATGCTATACTGAC 59.188 45.833 0.00 0.00 0.00 3.51
4776 4965 4.530161 ACAGCCAAATACCCAAATAGCAAA 59.470 37.500 0.00 0.00 0.00 3.68
4815 5004 0.402121 AGACAACCCCAGAGGAAAGC 59.598 55.000 0.00 0.00 39.89 3.51
4995 5184 8.116651 ACAATGTTTGTGCATACCTTGTTATA 57.883 30.769 11.55 0.00 43.48 0.98
5148 5337 2.158943 GGAAGTGGGTCACTGTATAGGC 60.159 54.545 1.01 0.00 44.62 3.93
5219 5408 5.830457 GGGCCTTTGCTAGAATCTAGAAAAT 59.170 40.000 20.48 0.00 37.74 1.82
5245 5434 2.009774 AGTGCATGGAAACGAGTATGC 58.990 47.619 0.00 0.00 44.56 3.14
5591 5780 0.691332 ACTCCGAAACTTTCCCCTCC 59.309 55.000 0.00 0.00 0.00 4.30
5892 6081 2.233676 TCTGCGAGTATGCTTTGAAGGA 59.766 45.455 0.00 0.00 35.36 3.36
5909 6098 3.314635 CCTGGTTAGCAATCTCAATCTGC 59.685 47.826 0.00 0.00 36.29 4.26
5953 6142 3.509442 ACATGCATCTTTTGGGGAGAAA 58.491 40.909 0.00 0.00 0.00 2.52
5954 6143 3.173953 ACATGCATCTTTTGGGGAGAA 57.826 42.857 0.00 0.00 0.00 2.87
5955 6144 2.827322 CAACATGCATCTTTTGGGGAGA 59.173 45.455 0.00 0.00 0.00 3.71
5957 6146 2.886913 TCAACATGCATCTTTTGGGGA 58.113 42.857 0.00 0.00 0.00 4.81
6036 6227 6.614657 TCCTGAAGATATGTCCACTATCTCA 58.385 40.000 0.00 0.00 35.40 3.27
6037 6228 7.232534 ACTTCCTGAAGATATGTCCACTATCTC 59.767 40.741 13.58 0.00 40.79 2.75
6149 6340 5.050499 CAGACTAACTGCAGTCACTGAAAAG 60.050 44.000 21.95 5.00 46.15 2.27
6154 6345 3.650070 TCAGACTAACTGCAGTCACTG 57.350 47.619 21.95 23.15 46.15 3.66
6157 6348 3.133901 TGGTTTCAGACTAACTGCAGTCA 59.866 43.478 21.95 4.10 46.15 3.41
6159 6350 3.838244 TGGTTTCAGACTAACTGCAGT 57.162 42.857 15.25 15.25 45.38 4.40
6183 6374 8.421249 AAGGGTAAATGAATCAGAAAACATGA 57.579 30.769 0.00 0.00 0.00 3.07
6220 6411 5.781818 AGGACAAACCCAGATTGATTTTCAT 59.218 36.000 0.00 0.00 40.05 2.57
6273 6464 0.727398 GCGAGGAAATGTGTGGTAGC 59.273 55.000 0.00 0.00 0.00 3.58
6291 6482 6.289901 GTCATTTTTATCACTACGATAGCGC 58.710 40.000 0.00 0.00 42.48 5.92
6315 6506 0.651042 TAACGTTTGTTTCGTGCGCG 60.651 50.000 14.79 14.79 41.38 6.86
6437 6631 5.204292 AGCTCAGTCTTACATCACTATCCA 58.796 41.667 0.00 0.00 0.00 3.41
6464 6658 0.611200 TGCACCTGTAGTTACGGCAT 59.389 50.000 0.00 0.00 0.00 4.40
6475 6669 1.149174 CTGACCCAACTGCACCTGT 59.851 57.895 0.00 0.00 0.00 4.00
6479 6673 0.463654 TGTCACTGACCCAACTGCAC 60.464 55.000 6.72 0.00 0.00 4.57
6506 6700 0.686789 TGCCTAACTGCTGCTTCTGA 59.313 50.000 0.00 0.00 0.00 3.27
6563 6757 6.349197 GGATTACTAGGGTATTGTCGAGCTAC 60.349 46.154 0.00 0.00 0.00 3.58
6567 6761 6.150809 GGTAGGATTACTAGGGTATTGTCGAG 59.849 46.154 0.00 0.00 30.77 4.04
6569 6763 5.771666 TGGTAGGATTACTAGGGTATTGTCG 59.228 44.000 0.00 0.00 30.77 4.35
6664 6859 8.462016 ACATTGTAAAAGCAGATTGACCTTATC 58.538 33.333 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.