Multiple sequence alignment - TraesCS1A01G315300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G315300 chr1A 100.000 3107 0 0 1 3107 506856594 506853488 0.000000 5738.0
1 TraesCS1A01G315300 chr1A 84.020 801 92 14 1133 1899 7196262 7195464 0.000000 737.0
2 TraesCS1A01G315300 chr1D 93.888 2618 85 23 1 2582 410603576 410600998 0.000000 3879.0
3 TraesCS1A01G315300 chr1B 94.241 2153 88 10 1 2132 553452927 553450790 0.000000 3256.0
4 TraesCS1A01G315300 chr1B 90.458 524 24 8 2042 2549 553450791 553450278 0.000000 667.0
5 TraesCS1A01G315300 chr1B 97.143 35 1 0 2548 2582 553450030 553449996 0.000034 60.2
6 TraesCS1A01G315300 chr4D 94.329 529 25 3 2580 3107 340091447 340091971 0.000000 806.0
7 TraesCS1A01G315300 chr4D 79.341 1002 204 2 999 1997 353698941 353697940 0.000000 701.0
8 TraesCS1A01G315300 chr4A 79.495 990 200 2 999 1985 111166404 111167393 0.000000 701.0
9 TraesCS1A01G315300 chr4B 78.942 1002 208 2 999 1997 437164071 437163070 0.000000 678.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G315300 chr1A 506853488 506856594 3106 True 5738.000000 5738 100.000000 1 3107 1 chr1A.!!$R2 3106
1 TraesCS1A01G315300 chr1A 7195464 7196262 798 True 737.000000 737 84.020000 1133 1899 1 chr1A.!!$R1 766
2 TraesCS1A01G315300 chr1D 410600998 410603576 2578 True 3879.000000 3879 93.888000 1 2582 1 chr1D.!!$R1 2581
3 TraesCS1A01G315300 chr1B 553449996 553452927 2931 True 1327.733333 3256 93.947333 1 2582 3 chr1B.!!$R1 2581
4 TraesCS1A01G315300 chr4D 340091447 340091971 524 False 806.000000 806 94.329000 2580 3107 1 chr4D.!!$F1 527
5 TraesCS1A01G315300 chr4D 353697940 353698941 1001 True 701.000000 701 79.341000 999 1997 1 chr4D.!!$R1 998
6 TraesCS1A01G315300 chr4A 111166404 111167393 989 False 701.000000 701 79.495000 999 1985 1 chr4A.!!$F1 986
7 TraesCS1A01G315300 chr4B 437163070 437164071 1001 True 678.000000 678 78.942000 999 1997 1 chr4B.!!$R1 998

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
674 698 0.468771 CTCATGGAAGATTGGGGCCC 60.469 60.0 18.17 18.17 0.0 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2505 2693 0.035056 TTAAGAAGCTCCCAGCAGGC 60.035 55.0 0.0 0.0 45.56 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 20 2.293877 CCTACCCTACCACCACCAC 58.706 63.158 0.00 0.00 0.00 4.16
84 87 2.537714 AATCTCCTCGGTGAGCCCCT 62.538 60.000 0.00 0.00 32.22 4.79
135 138 6.737720 TGTTTGTGCTAGATCTGAGGATAT 57.262 37.500 5.18 0.00 31.46 1.63
181 184 1.862806 GGAGACTCTGTTTGCGTGC 59.137 57.895 1.74 0.00 0.00 5.34
210 217 3.558505 TGTCGCTGTCGTTAGAGTAAAC 58.441 45.455 0.00 0.00 36.96 2.01
220 227 8.511465 TGTCGTTAGAGTAAACTGATTTGTAC 57.489 34.615 0.00 0.00 0.00 2.90
221 228 8.136800 TGTCGTTAGAGTAAACTGATTTGTACA 58.863 33.333 0.00 0.00 0.00 2.90
355 362 2.584391 GCTTGTCCTGTCCGTCCCT 61.584 63.158 0.00 0.00 0.00 4.20
401 408 3.102097 GCCTCCGGCTTCATTTCG 58.898 61.111 0.00 0.00 46.69 3.46
486 493 5.004726 GCGAGTCAAAATCAATGGCAAATAC 59.995 40.000 0.00 0.00 0.00 1.89
487 494 6.324819 CGAGTCAAAATCAATGGCAAATACT 58.675 36.000 0.00 0.00 0.00 2.12
488 495 6.470235 CGAGTCAAAATCAATGGCAAATACTC 59.530 38.462 0.00 0.00 0.00 2.59
489 496 6.633856 AGTCAAAATCAATGGCAAATACTCC 58.366 36.000 0.00 0.00 0.00 3.85
490 497 6.438425 AGTCAAAATCAATGGCAAATACTCCT 59.562 34.615 0.00 0.00 0.00 3.69
491 498 7.615365 AGTCAAAATCAATGGCAAATACTCCTA 59.385 33.333 0.00 0.00 0.00 2.94
492 499 7.917505 GTCAAAATCAATGGCAAATACTCCTAG 59.082 37.037 0.00 0.00 0.00 3.02
493 500 7.615365 TCAAAATCAATGGCAAATACTCCTAGT 59.385 33.333 0.00 0.00 0.00 2.57
494 501 8.902806 CAAAATCAATGGCAAATACTCCTAGTA 58.097 33.333 0.00 0.00 34.82 1.82
503 513 5.862860 GCAAATACTCCTAGTATAGAACGCC 59.137 44.000 0.21 0.00 42.77 5.68
580 604 2.770130 GACCCAAGCCAATCCCCA 59.230 61.111 0.00 0.00 0.00 4.96
674 698 0.468771 CTCATGGAAGATTGGGGCCC 60.469 60.000 18.17 18.17 0.00 5.80
695 719 4.053295 CCAGACCTGCATTTTCAAACAAG 58.947 43.478 0.00 0.00 0.00 3.16
785 809 9.891828 TTAATACTAATGTCTGTGTTTGCAAAG 57.108 29.630 13.26 0.02 0.00 2.77
802 826 3.761897 CAAAGGGTGTTTGATGGTAGGA 58.238 45.455 0.00 0.00 0.00 2.94
808 832 4.887655 GGGTGTTTGATGGTAGGAAATAGG 59.112 45.833 0.00 0.00 0.00 2.57
810 834 5.949952 GGTGTTTGATGGTAGGAAATAGGTT 59.050 40.000 0.00 0.00 0.00 3.50
858 885 3.817647 AGCTCCACAAATGTCTCTTGTTC 59.182 43.478 0.00 0.00 34.80 3.18
1035 1062 2.952310 GCCCAAGAACATCCTCATAACC 59.048 50.000 0.00 0.00 0.00 2.85
1044 1071 2.125310 CTCATAACCGGTGCCGCA 60.125 61.111 8.52 0.00 38.24 5.69
1092 1119 1.470979 CGTCTGGTCAGGAATTACCCG 60.471 57.143 0.00 0.00 40.05 5.28
1110 1137 0.645355 CGCGCTACAACATCGTCATT 59.355 50.000 5.56 0.00 0.00 2.57
1294 1321 0.039074 CGTCGACAACTCCTTCAGCT 60.039 55.000 17.16 0.00 0.00 4.24
1336 1371 1.693062 ACAATGTGTACGGTACCCACA 59.307 47.619 20.41 20.41 42.70 4.17
1689 1742 4.158764 AGCTACTTGTACTGTGAGGATGTC 59.841 45.833 0.00 0.00 0.00 3.06
1692 1745 1.253100 TGTACTGTGAGGATGTCGCA 58.747 50.000 0.00 0.00 43.66 5.10
1829 1893 0.620556 GACCCTGAGAAGGCCATCAA 59.379 55.000 11.19 0.00 0.00 2.57
1860 1924 0.179004 ACAGGCCGTTCAATGACCAA 60.179 50.000 0.00 0.00 0.00 3.67
1904 1968 2.936032 GAGGAGGCTGGGGTGGTT 60.936 66.667 0.00 0.00 0.00 3.67
2019 2083 0.391130 GGCAGCATCGTAACTGGACA 60.391 55.000 0.00 0.00 34.38 4.02
2039 2103 1.970352 TATGCTGCCTCATCACCGCA 61.970 55.000 0.00 0.00 0.00 5.69
2066 2130 4.471025 TGATGAAGCAGTTGAGGATCCTAA 59.529 41.667 16.16 3.77 0.00 2.69
2156 2309 2.350772 GGAGGCAACAACACGATTCAAG 60.351 50.000 0.00 0.00 41.41 3.02
2166 2319 5.240623 ACAACACGATTCAAGCCTCAAATAA 59.759 36.000 0.00 0.00 0.00 1.40
2180 2333 6.213600 AGCCTCAAATAAGAGTGAGTTTCCTA 59.786 38.462 0.00 0.00 39.76 2.94
2204 2370 3.372206 GCTACTACTGCCATTGTGTCTTG 59.628 47.826 0.00 0.00 0.00 3.02
2381 2569 4.813750 AATGCCTTTTTCCATCTCCAAG 57.186 40.909 0.00 0.00 0.00 3.61
2403 2591 4.469227 AGATCTAGTGCATCACCTTGAGTT 59.531 41.667 0.00 0.00 34.49 3.01
2416 2604 7.067496 TCACCTTGAGTTGTAGAGAAAATCT 57.933 36.000 0.00 0.00 42.47 2.40
2498 2686 4.019411 TCCAAGATCAGTTGTCAGCCATAA 60.019 41.667 0.00 0.00 0.00 1.90
2500 2688 4.833478 AGATCAGTTGTCAGCCATAAGT 57.167 40.909 0.00 0.00 0.00 2.24
2501 2689 4.511527 AGATCAGTTGTCAGCCATAAGTG 58.488 43.478 0.00 0.00 0.00 3.16
2502 2690 2.426522 TCAGTTGTCAGCCATAAGTGC 58.573 47.619 0.00 0.00 0.00 4.40
2503 2691 2.038952 TCAGTTGTCAGCCATAAGTGCT 59.961 45.455 0.00 0.00 40.41 4.40
2528 2716 3.371380 CCTGCTGGGAGCTTCTTAATCTT 60.371 47.826 0.71 0.00 42.97 2.40
2530 2718 3.264193 TGCTGGGAGCTTCTTAATCTTGA 59.736 43.478 0.00 0.00 42.97 3.02
2538 2726 6.540189 GGAGCTTCTTAATCTTGATGCAGTAA 59.460 38.462 0.00 0.00 36.30 2.24
2543 2731 9.593134 CTTCTTAATCTTGATGCAGTAAGTAGT 57.407 33.333 11.22 3.04 0.00 2.73
2545 2733 8.972127 TCTTAATCTTGATGCAGTAAGTAGTCT 58.028 33.333 11.22 0.00 0.00 3.24
2582 3020 8.989980 GGTAATACTTTCAGGTATAGCATGAAC 58.010 37.037 13.05 4.91 45.92 3.18
2592 3030 8.360390 TCAGGTATAGCATGAACTAGTAATGTG 58.640 37.037 16.02 6.69 34.70 3.21
2593 3031 8.360390 CAGGTATAGCATGAACTAGTAATGTGA 58.640 37.037 16.02 7.96 0.00 3.58
2602 3040 1.927174 CTAGTAATGTGAGCGCGCTTT 59.073 47.619 36.87 26.66 0.00 3.51
2625 3063 2.435059 GCCGCTCTTCACTGGGAC 60.435 66.667 0.00 0.00 0.00 4.46
2645 3083 5.163395 GGGACGTCTATCTTCCAGAAAATCT 60.163 44.000 16.46 0.00 36.35 2.40
2670 3108 8.050778 TGTTCACTTGTTCTCAAATAACAACT 57.949 30.769 0.00 0.00 40.83 3.16
2678 3116 9.872757 TTGTTCTCAAATAACAACTTAACGATC 57.127 29.630 0.00 0.00 40.83 3.69
2697 3135 5.184864 ACGATCTGAAGAGAACTGTGAGATT 59.815 40.000 0.00 0.00 0.00 2.40
2700 3138 6.602410 TCTGAAGAGAACTGTGAGATTGAT 57.398 37.500 0.00 0.00 0.00 2.57
2701 3139 6.396450 TCTGAAGAGAACTGTGAGATTGATG 58.604 40.000 0.00 0.00 0.00 3.07
2703 3141 5.930569 TGAAGAGAACTGTGAGATTGATGTG 59.069 40.000 0.00 0.00 0.00 3.21
2704 3142 5.735285 AGAGAACTGTGAGATTGATGTGA 57.265 39.130 0.00 0.00 0.00 3.58
2705 3143 6.106648 AGAGAACTGTGAGATTGATGTGAA 57.893 37.500 0.00 0.00 0.00 3.18
2708 3146 6.709281 AGAACTGTGAGATTGATGTGAATCT 58.291 36.000 0.00 0.00 43.92 2.40
2783 3222 6.223852 TCATGGACTCTTTTCTAGTGACAAC 58.776 40.000 0.00 0.00 0.00 3.32
2796 3235 8.948631 TTCTAGTGACAACCATGAGATTAATC 57.051 34.615 7.41 7.41 0.00 1.75
2797 3236 7.203218 TCTAGTGACAACCATGAGATTAATCG 58.797 38.462 9.78 0.00 0.00 3.34
2824 3263 5.473846 TCCTATGACTGGATCGTGAGTTATC 59.526 44.000 0.49 0.00 0.00 1.75
2892 3331 0.463620 ATCTGCCTCTTCGAGCTTCC 59.536 55.000 0.00 0.00 0.00 3.46
2932 3371 4.263068 GGTTCTTCAGTCCCATCTTTGAGA 60.263 45.833 0.00 0.00 0.00 3.27
3037 3476 1.019673 ACAATCTGCATTGGCTAGCG 58.980 50.000 9.00 0.00 43.47 4.26
3054 3493 6.127758 TGGCTAGCGACAATAAAAACAATCAT 60.128 34.615 9.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 64 0.526524 GCTCACCGAGGAGATTGACG 60.527 60.000 7.38 0.00 37.05 4.35
62 65 0.179097 GGCTCACCGAGGAGATTGAC 60.179 60.000 7.38 0.00 37.05 3.18
84 87 1.540367 ATGGAAGGGAACGGGGACA 60.540 57.895 0.00 0.00 0.00 4.02
135 138 2.165437 GTCAAAGTCAAACCCAGTGCAA 59.835 45.455 0.00 0.00 0.00 4.08
181 184 2.194800 ACGACAGCGACATGATACAG 57.805 50.000 0.00 0.00 41.64 2.74
210 217 3.871594 GGATTCGGACCTGTACAAATCAG 59.128 47.826 14.51 8.33 0.00 2.90
220 227 4.899502 AGCAATAATAGGATTCGGACCTG 58.100 43.478 0.00 0.00 38.31 4.00
221 228 4.841246 AGAGCAATAATAGGATTCGGACCT 59.159 41.667 0.00 0.00 41.05 3.85
329 336 3.470567 CAGGACAAGCGCGTCGAC 61.471 66.667 8.43 5.18 36.73 4.20
486 493 2.775890 TCCGGCGTTCTATACTAGGAG 58.224 52.381 6.01 0.00 0.00 3.69
487 494 2.936919 TCCGGCGTTCTATACTAGGA 57.063 50.000 6.01 0.00 0.00 2.94
488 495 2.818432 ACATCCGGCGTTCTATACTAGG 59.182 50.000 6.01 0.00 0.00 3.02
489 496 4.227538 CAACATCCGGCGTTCTATACTAG 58.772 47.826 6.01 0.00 0.00 2.57
490 497 3.005050 CCAACATCCGGCGTTCTATACTA 59.995 47.826 6.01 0.00 0.00 1.82
491 498 2.223971 CCAACATCCGGCGTTCTATACT 60.224 50.000 6.01 0.00 0.00 2.12
492 499 2.132762 CCAACATCCGGCGTTCTATAC 58.867 52.381 6.01 0.00 0.00 1.47
493 500 1.758280 ACCAACATCCGGCGTTCTATA 59.242 47.619 6.01 0.00 0.00 1.31
494 501 0.539986 ACCAACATCCGGCGTTCTAT 59.460 50.000 6.01 0.00 0.00 1.98
503 513 1.078497 TGGCAGCTACCAACATCCG 60.078 57.895 2.13 0.00 36.55 4.18
556 580 0.846427 ATTGGCTTGGGTCCTCTCCA 60.846 55.000 0.00 0.00 0.00 3.86
606 630 1.369625 CAGAACTGTTATGACCCGGC 58.630 55.000 9.45 0.00 0.00 6.13
674 698 4.505191 CACTTGTTTGAAAATGCAGGTCTG 59.495 41.667 0.00 0.00 0.00 3.51
695 719 8.099364 TCATTTCTATTTCAAGTTGGTCTCAC 57.901 34.615 2.34 0.00 0.00 3.51
770 794 1.476488 ACACCCTTTGCAAACACAGAC 59.524 47.619 8.05 0.00 0.00 3.51
785 809 4.887655 CCTATTTCCTACCATCAAACACCC 59.112 45.833 0.00 0.00 0.00 4.61
838 865 3.503748 GGGAACAAGAGACATTTGTGGAG 59.496 47.826 0.00 0.00 38.67 3.86
872 899 2.548480 GTGTGAGACCAAGGCTGTTAAC 59.452 50.000 0.00 0.00 0.00 2.01
1035 1062 3.039202 GATGAAACCTGCGGCACCG 62.039 63.158 4.30 4.30 43.09 4.94
1044 1071 1.375523 GTGGGACGCGATGAAACCT 60.376 57.895 15.93 0.00 0.00 3.50
1092 1119 1.927174 AGAATGACGATGTTGTAGCGC 59.073 47.619 0.00 0.00 43.14 5.92
1128 1155 1.705186 AGGTTTCTAAGGCTGGAGCAA 59.295 47.619 0.20 0.00 44.36 3.91
1294 1321 5.011125 TGTTTTTGGTGAACTCAAAGGAACA 59.989 36.000 0.00 0.00 34.87 3.18
1548 1597 3.869065 CCCATACACATTGTTACCTCGT 58.131 45.455 0.00 0.00 0.00 4.18
1689 1742 1.267806 ACAACATCAAAGGCTTCTGCG 59.732 47.619 0.00 0.00 40.82 5.18
1692 1745 4.889409 TGAAGAACAACATCAAAGGCTTCT 59.111 37.500 0.00 0.00 33.55 2.85
1829 1893 2.584391 GGCCTGTCCTCCACGAACT 61.584 63.158 0.00 0.00 0.00 3.01
1860 1924 1.764134 TCACCGTCCACAAAGTACCTT 59.236 47.619 0.00 0.00 0.00 3.50
2019 2083 0.604780 GCGGTGATGAGGCAGCATAT 60.605 55.000 0.00 0.00 36.11 1.78
2054 2118 4.695455 CGCTTTTCAACTTAGGATCCTCAA 59.305 41.667 20.22 10.22 0.00 3.02
2066 2130 2.143122 TCGATCTTGCGCTTTTCAACT 58.857 42.857 9.73 0.00 0.00 3.16
2156 2309 5.249420 AGGAAACTCACTCTTATTTGAGGC 58.751 41.667 3.79 0.00 43.12 4.70
2166 2319 6.376018 CAGTAGTAGCTTAGGAAACTCACTCT 59.624 42.308 0.00 0.00 43.67 3.24
2180 2333 3.261897 AGACACAATGGCAGTAGTAGCTT 59.738 43.478 0.00 0.00 0.00 3.74
2204 2370 1.332904 GCACTCGTAACAGTTGTGTGC 60.333 52.381 12.44 12.44 41.53 4.57
2215 2381 2.225491 GGCAAAATCTGTGCACTCGTAA 59.775 45.455 19.41 0.00 44.07 3.18
2359 2536 4.840115 TCTTGGAGATGGAAAAAGGCATTT 59.160 37.500 0.00 0.00 0.00 2.32
2381 2569 4.399004 ACTCAAGGTGATGCACTAGATC 57.601 45.455 0.00 0.00 34.40 2.75
2403 2591 8.816894 ACTGATACAAAGGAGATTTTCTCTACA 58.183 33.333 4.65 0.00 42.95 2.74
2416 2604 5.730550 AGCGTAATTCACTGATACAAAGGA 58.269 37.500 0.00 0.00 0.00 3.36
2502 2690 3.991725 GAAGCTCCCAGCAGGCCAG 62.992 68.421 5.01 0.00 45.56 4.85
2503 2691 4.039092 GAAGCTCCCAGCAGGCCA 62.039 66.667 5.01 0.00 45.56 5.36
2504 2692 1.915078 TAAGAAGCTCCCAGCAGGCC 61.915 60.000 0.00 0.00 45.56 5.19
2505 2693 0.035056 TTAAGAAGCTCCCAGCAGGC 60.035 55.000 0.00 0.00 45.56 4.85
2506 2694 2.172293 AGATTAAGAAGCTCCCAGCAGG 59.828 50.000 0.00 0.00 45.56 4.85
2507 2695 3.557228 AGATTAAGAAGCTCCCAGCAG 57.443 47.619 0.00 0.00 45.56 4.24
2528 2716 7.119262 GCCTTAAAAAGACTACTTACTGCATCA 59.881 37.037 0.00 0.00 35.05 3.07
2530 2718 6.374613 GGCCTTAAAAAGACTACTTACTGCAT 59.625 38.462 0.00 0.00 35.05 3.96
2538 2726 5.488262 TTACCGGCCTTAAAAAGACTACT 57.512 39.130 0.00 0.00 0.00 2.57
2543 2731 6.941436 TGAAAGTATTACCGGCCTTAAAAAGA 59.059 34.615 0.00 0.00 0.00 2.52
2545 2733 6.151480 CCTGAAAGTATTACCGGCCTTAAAAA 59.849 38.462 0.00 0.00 0.00 1.94
2582 3020 1.560923 AAGCGCGCTCACATTACTAG 58.439 50.000 36.57 0.00 0.00 2.57
2645 3083 8.050778 AGTTGTTATTTGAGAACAAGTGAACA 57.949 30.769 7.49 0.00 44.75 3.18
2670 3108 6.206829 TCTCACAGTTCTCTTCAGATCGTTAA 59.793 38.462 0.00 0.00 0.00 2.01
2678 3116 6.091034 CACATCAATCTCACAGTTCTCTTCAG 59.909 42.308 0.00 0.00 0.00 3.02
2783 3222 7.032580 GTCATAGGAGTCGATTAATCTCATGG 58.967 42.308 13.45 0.00 0.00 3.66
2796 3235 2.031595 CACGATCCAGTCATAGGAGTCG 60.032 54.545 0.00 0.00 38.83 4.18
2797 3236 3.215151 TCACGATCCAGTCATAGGAGTC 58.785 50.000 0.00 0.00 38.83 3.36
2824 3263 8.412456 AGAACTTCGATGGATGCATATATAGAG 58.588 37.037 0.00 0.00 0.00 2.43
2837 3276 4.039245 ACTTGAAGACAGAACTTCGATGGA 59.961 41.667 0.00 0.00 46.21 3.41
2838 3277 4.310769 ACTTGAAGACAGAACTTCGATGG 58.689 43.478 0.00 0.00 46.21 3.51
2932 3371 4.974645 TTGGAGTCAACAAGTCTACCAT 57.025 40.909 0.00 0.00 0.00 3.55
2940 3379 9.695526 TGAATAATTTGAATTGGAGTCAACAAG 57.304 29.630 0.00 0.00 34.78 3.16
3012 3451 1.273048 GCCAATGCAGATTGTTGTGGA 59.727 47.619 0.00 0.00 37.82 4.02
3054 3493 2.567169 ACTGGCATACTGCTACTGTCAA 59.433 45.455 0.00 0.00 44.28 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.