Multiple sequence alignment - TraesCS1A01G313900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G313900 chr1A 100.000 4437 0 0 1 4437 505484988 505480552 0.000000e+00 8194.0
1 TraesCS1A01G313900 chr1A 89.041 365 34 2 996 1360 505480935 505480577 8.750000e-122 448.0
2 TraesCS1A01G313900 chr1A 89.041 365 34 2 4054 4412 505483993 505483629 8.750000e-122 448.0
3 TraesCS1A01G313900 chr1A 95.968 248 10 0 1 248 41258345 41258592 1.920000e-108 403.0
4 TraesCS1A01G313900 chr1A 85.149 404 39 12 1220 1610 523757246 523756851 1.160000e-105 394.0
5 TraesCS1A01G313900 chr1A 88.201 339 19 11 1255 1585 552504549 552504874 6.960000e-103 385.0
6 TraesCS1A01G313900 chr1A 91.579 95 7 1 2272 2365 531647146 531647240 3.600000e-26 130.0
7 TraesCS1A01G313900 chr1D 92.654 1443 61 20 2427 3849 409527681 409526264 0.000000e+00 2036.0
8 TraesCS1A01G313900 chr1D 88.664 988 39 30 656 1611 409529395 409528449 0.000000e+00 1136.0
9 TraesCS1A01G313900 chr1D 91.262 515 17 16 3901 4410 409526181 409525690 0.000000e+00 676.0
10 TraesCS1A01G313900 chr1D 80.691 782 89 32 1523 2281 409528426 409527684 6.490000e-153 551.0
11 TraesCS1A01G313900 chr1D 89.385 358 32 2 1000 1357 409526042 409525691 3.150000e-121 446.0
12 TraesCS1A01G313900 chr1D 89.167 360 30 3 4054 4404 409529062 409528703 1.460000e-119 440.0
13 TraesCS1A01G313900 chr1D 87.071 379 25 7 292 656 258360846 258360478 1.490000e-109 407.0
14 TraesCS1A01G313900 chr1D 95.547 247 10 1 1 247 12486665 12486420 1.160000e-105 394.0
15 TraesCS1A01G313900 chr1D 77.537 601 93 28 2870 3437 409525322 409524731 1.540000e-84 324.0
16 TraesCS1A01G313900 chr1D 90.909 99 5 3 2267 2365 192809902 192809996 3.600000e-26 130.0
17 TraesCS1A01G313900 chr1D 94.203 69 3 1 2364 2431 407351158 407351090 2.180000e-18 104.0
18 TraesCS1A01G313900 chr1B 93.394 1211 59 14 2427 3626 551232499 551231299 0.000000e+00 1773.0
19 TraesCS1A01G313900 chr1B 91.024 947 25 21 738 1651 551234015 551233096 0.000000e+00 1223.0
20 TraesCS1A01G313900 chr1B 92.203 513 18 10 3909 4410 551230770 551230269 0.000000e+00 706.0
21 TraesCS1A01G313900 chr1B 88.976 508 27 15 1099 1585 39564955 39565454 6.350000e-168 601.0
22 TraesCS1A01G313900 chr1B 88.827 358 34 2 1000 1357 551230621 551230270 6.820000e-118 435.0
23 TraesCS1A01G313900 chr1B 88.140 371 32 3 4054 4412 551233769 551233399 8.820000e-117 431.0
24 TraesCS1A01G313900 chr1B 78.209 592 96 25 2870 3437 551229898 551229316 9.130000e-92 348.0
25 TraesCS1A01G313900 chr1B 85.075 268 25 4 4157 4409 39564955 39565222 4.400000e-65 259.0
26 TraesCS1A01G313900 chr1B 84.651 215 12 8 3638 3851 551231238 551231044 1.260000e-45 195.0
27 TraesCS1A01G313900 chr1B 95.455 66 3 0 2364 2429 22433831 22433766 6.070000e-19 106.0
28 TraesCS1A01G313900 chr1B 96.825 63 2 0 580 642 622949511 622949573 6.070000e-19 106.0
29 TraesCS1A01G313900 chr6A 88.845 502 30 14 1099 1585 595961327 595961817 1.060000e-165 593.0
30 TraesCS1A01G313900 chr6A 90.659 364 21 6 292 642 584509499 584509136 5.190000e-129 472.0
31 TraesCS1A01G313900 chr6A 95.968 248 6 2 1 244 528946745 528946498 2.490000e-107 399.0
32 TraesCS1A01G313900 chr6A 96.875 64 1 1 580 642 38946847 38946784 6.070000e-19 106.0
33 TraesCS1A01G313900 chr6A 100.000 32 0 0 243 274 584509532 584509501 4.790000e-05 60.2
34 TraesCS1A01G313900 chr3B 86.704 534 41 13 1099 1610 10181197 10181722 2.320000e-157 566.0
35 TraesCS1A01G313900 chr3B 95.918 245 10 0 1 245 768201329 768201085 8.940000e-107 398.0
36 TraesCS1A01G313900 chr3B 81.303 353 66 0 4057 4409 571602078 571602430 2.020000e-73 287.0
37 TraesCS1A01G313900 chr3B 83.704 270 25 8 4157 4409 10181197 10181464 2.060000e-58 237.0
38 TraesCS1A01G313900 chr3B 91.667 96 6 2 2270 2365 756059631 756059724 1.000000e-26 132.0
39 TraesCS1A01G313900 chr3B 96.875 64 1 1 580 642 131527921 131527984 6.070000e-19 106.0
40 TraesCS1A01G313900 chr6B 84.646 508 49 17 1099 1585 148312313 148311814 3.100000e-131 479.0
41 TraesCS1A01G313900 chr6B 95.492 244 11 0 1 244 489487608 489487365 1.500000e-104 390.0
42 TraesCS1A01G313900 chr6B 94.382 89 5 0 2277 2365 609097530 609097618 2.150000e-28 137.0
43 TraesCS1A01G313900 chr6B 89.041 73 4 4 571 642 131674655 131674724 2.200000e-13 87.9
44 TraesCS1A01G313900 chr2A 85.030 501 40 18 1099 1585 287751470 287751949 1.120000e-130 477.0
45 TraesCS1A01G313900 chr2A 95.547 247 7 1 1 247 79464591 79464349 4.160000e-105 392.0
46 TraesCS1A01G313900 chr2A 87.162 148 11 4 2135 2281 19648316 19648176 1.280000e-35 161.0
47 TraesCS1A01G313900 chr5B 96.327 245 7 2 1 244 551809230 551808987 6.910000e-108 401.0
48 TraesCS1A01G313900 chr5B 90.816 98 7 2 2269 2365 132614188 132614284 3.600000e-26 130.0
49 TraesCS1A01G313900 chr5B 87.778 90 9 2 2364 2452 550925113 550925201 2.180000e-18 104.0
50 TraesCS1A01G313900 chr5A 95.142 247 11 1 1 246 10833020 10832774 5.380000e-104 388.0
51 TraesCS1A01G313900 chr5A 94.253 87 5 0 2279 2365 6596313 6596227 2.780000e-27 134.0
52 TraesCS1A01G313900 chr2B 95.161 248 8 1 1 248 543165524 543165281 5.380000e-104 388.0
53 TraesCS1A01G313900 chr2B 74.771 872 174 38 2593 3437 699048592 699049444 2.540000e-92 350.0
54 TraesCS1A01G313900 chr2B 83.146 356 46 8 4057 4409 699039996 699040340 3.330000e-81 313.0
55 TraesCS1A01G313900 chr3A 84.488 361 50 6 1000 1360 574255302 574255656 7.060000e-93 351.0
56 TraesCS1A01G313900 chr3A 81.395 387 68 4 4024 4409 574255270 574255653 3.330000e-81 313.0
57 TraesCS1A01G313900 chr3A 85.714 224 16 11 1375 1585 678045161 678044941 5.780000e-54 222.0
58 TraesCS1A01G313900 chr3A 83.152 184 31 0 4229 4412 678053202 678053019 7.630000e-38 169.0
59 TraesCS1A01G313900 chr3D 81.586 353 65 0 4057 4409 435444004 435444356 4.340000e-75 292.0
60 TraesCS1A01G313900 chr3D 84.158 101 13 2 4262 4359 608304498 608304598 1.310000e-15 95.3
61 TraesCS1A01G313900 chr4A 96.386 83 3 0 2283 2365 575736535 575736453 2.150000e-28 137.0
62 TraesCS1A01G313900 chr4A 96.721 61 2 0 582 642 311258804 311258864 7.850000e-18 102.0
63 TraesCS1A01G313900 chr4A 86.364 88 5 7 560 642 636011332 636011247 6.110000e-14 89.8
64 TraesCS1A01G313900 chr2D 96.341 82 3 0 2284 2365 174430834 174430753 7.740000e-28 135.0
65 TraesCS1A01G313900 chr2D 95.238 63 3 0 582 644 180078198 180078260 2.820000e-17 100.0
66 TraesCS1A01G313900 chr7B 90.000 100 8 2 2286 2384 451446881 451446979 1.300000e-25 128.0
67 TraesCS1A01G313900 chr7B 84.694 98 12 2 4265 4359 458528451 458528548 1.310000e-15 95.3
68 TraesCS1A01G313900 chr4B 92.208 77 5 1 2364 2440 370917045 370916970 1.690000e-19 108.0
69 TraesCS1A01G313900 chr7D 94.203 69 4 0 2364 2432 92212915 92212983 6.070000e-19 106.0
70 TraesCS1A01G313900 chr7D 94.203 69 3 1 2364 2431 271541795 271541863 2.180000e-18 104.0
71 TraesCS1A01G313900 chr5D 95.455 66 3 0 2364 2429 222673166 222673231 6.070000e-19 106.0
72 TraesCS1A01G313900 chr5D 94.118 68 4 0 2364 2431 226705879 226705946 2.180000e-18 104.0
73 TraesCS1A01G313900 chr7A 92.105 76 3 3 2368 2441 547951709 547951783 2.180000e-18 104.0
74 TraesCS1A01G313900 chr7A 95.082 61 2 1 581 641 14414629 14414570 1.310000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G313900 chr1A 505480552 505484988 4436 True 8194.000000 8194 100.000000 1 4437 1 chr1A.!!$R1 4436
1 TraesCS1A01G313900 chr1A 505480577 505483993 3416 True 448.000000 448 89.041000 996 4412 2 chr1A.!!$R3 3416
2 TraesCS1A01G313900 chr1D 409524731 409529395 4664 True 801.285714 2036 87.051429 656 4410 7 chr1D.!!$R4 3754
3 TraesCS1A01G313900 chr1B 551229316 551234015 4699 True 730.142857 1773 88.064000 738 4412 7 chr1B.!!$R2 3674
4 TraesCS1A01G313900 chr3B 10181197 10181722 525 False 401.500000 566 85.204000 1099 4409 2 chr3B.!!$F4 3310
5 TraesCS1A01G313900 chr2B 699048592 699049444 852 False 350.000000 350 74.771000 2593 3437 1 chr2B.!!$F2 844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 372 0.032515 TTCCCTAGATCCAGACGGCA 60.033 55.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
4414 4934 4.071961 TCCGAATGTCCAATCCTACATG 57.928 45.455 0.0 0.0 36.47 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.463533 TGTGTTGATAATTGAACGCCG 57.536 42.857 0.00 0.00 32.66 6.46
21 22 3.067833 TGTGTTGATAATTGAACGCCGA 58.932 40.909 0.00 0.00 32.66 5.54
22 23 3.124466 TGTGTTGATAATTGAACGCCGAG 59.876 43.478 0.00 0.00 32.66 4.63
23 24 3.369756 GTGTTGATAATTGAACGCCGAGA 59.630 43.478 0.00 0.00 0.00 4.04
24 25 3.369756 TGTTGATAATTGAACGCCGAGAC 59.630 43.478 0.00 0.00 0.00 3.36
25 26 3.239587 TGATAATTGAACGCCGAGACA 57.760 42.857 0.00 0.00 0.00 3.41
26 27 2.927477 TGATAATTGAACGCCGAGACAC 59.073 45.455 0.00 0.00 0.00 3.67
27 28 1.342555 TAATTGAACGCCGAGACACG 58.657 50.000 0.00 0.00 42.18 4.49
36 37 2.355363 CGAGACACGGCGAAACCA 60.355 61.111 16.62 0.00 39.03 3.67
37 38 2.654912 CGAGACACGGCGAAACCAC 61.655 63.158 16.62 0.00 39.03 4.16
38 39 2.654912 GAGACACGGCGAAACCACG 61.655 63.158 16.62 0.00 39.03 4.94
47 48 3.798506 CGAAACCACGCCGAATATG 57.201 52.632 0.00 0.00 0.00 1.78
48 49 0.303493 CGAAACCACGCCGAATATGG 59.697 55.000 0.00 0.00 39.57 2.74
49 50 0.661020 GAAACCACGCCGAATATGGG 59.339 55.000 0.00 0.00 37.86 4.00
57 58 2.789409 GCCGAATATGGGCCTATTCT 57.211 50.000 22.26 0.00 44.97 2.40
58 59 2.633488 GCCGAATATGGGCCTATTCTC 58.367 52.381 22.26 3.45 44.97 2.87
59 60 2.893637 CCGAATATGGGCCTATTCTCG 58.106 52.381 19.45 19.45 36.42 4.04
60 61 2.271800 CGAATATGGGCCTATTCTCGC 58.728 52.381 22.26 7.55 36.42 5.03
61 62 2.633488 GAATATGGGCCTATTCTCGCC 58.367 52.381 7.02 0.00 44.92 5.54
67 68 2.029838 GGCCTATTCTCGCCCATATG 57.970 55.000 0.00 0.00 39.39 1.78
68 69 1.407437 GGCCTATTCTCGCCCATATGG 60.407 57.143 15.41 15.41 39.39 2.74
81 82 1.818674 CCATATGGGCCCTTTATTCGC 59.181 52.381 25.70 0.00 0.00 4.70
82 83 1.818674 CATATGGGCCCTTTATTCGCC 59.181 52.381 25.70 0.00 42.23 5.54
83 84 0.250553 TATGGGCCCTTTATTCGCCG 60.251 55.000 25.70 0.00 43.99 6.46
84 85 1.990160 ATGGGCCCTTTATTCGCCGA 61.990 55.000 25.70 0.00 43.99 5.54
85 86 1.452470 GGGCCCTTTATTCGCCGAA 60.452 57.895 17.04 0.33 43.99 4.30
86 87 1.033202 GGGCCCTTTATTCGCCGAAA 61.033 55.000 17.04 0.00 43.99 3.46
87 88 1.029681 GGCCCTTTATTCGCCGAAAT 58.970 50.000 2.60 0.00 31.92 2.17
88 89 1.407618 GGCCCTTTATTCGCCGAAATT 59.592 47.619 2.60 0.00 31.92 1.82
89 90 2.459934 GCCCTTTATTCGCCGAAATTG 58.540 47.619 2.60 0.00 0.00 2.32
90 91 2.798145 GCCCTTTATTCGCCGAAATTGG 60.798 50.000 2.60 4.21 0.00 3.16
91 92 2.223711 CCCTTTATTCGCCGAAATTGGG 60.224 50.000 2.60 9.64 0.00 4.12
99 100 3.126729 CCGAAATTGGGCTGCAAAG 57.873 52.632 0.50 0.00 0.00 2.77
100 101 0.318120 CCGAAATTGGGCTGCAAAGT 59.682 50.000 0.50 0.00 0.00 2.66
101 102 1.421382 CGAAATTGGGCTGCAAAGTG 58.579 50.000 0.50 0.00 0.00 3.16
102 103 1.799544 GAAATTGGGCTGCAAAGTGG 58.200 50.000 0.50 0.00 0.00 4.00
103 104 0.397564 AAATTGGGCTGCAAAGTGGG 59.602 50.000 0.50 0.00 0.00 4.61
104 105 2.115734 AATTGGGCTGCAAAGTGGGC 62.116 55.000 0.50 0.00 0.00 5.36
107 108 3.233231 GGCTGCAAAGTGGGCCAA 61.233 61.111 8.40 0.00 43.59 4.52
108 109 2.586293 GGCTGCAAAGTGGGCCAAT 61.586 57.895 8.40 3.05 43.59 3.16
109 110 1.372307 GCTGCAAAGTGGGCCAATT 59.628 52.632 14.45 14.45 0.00 2.32
110 111 0.250424 GCTGCAAAGTGGGCCAATTT 60.250 50.000 25.03 25.03 31.76 1.82
111 112 1.799544 CTGCAAAGTGGGCCAATTTC 58.200 50.000 27.50 21.06 29.07 2.17
112 113 0.033228 TGCAAAGTGGGCCAATTTCG 59.967 50.000 27.50 22.02 29.07 3.46
113 114 0.670239 GCAAAGTGGGCCAATTTCGG 60.670 55.000 27.50 18.68 29.07 4.30
120 121 4.496927 GCCAATTTCGGCGCCTGG 62.497 66.667 26.68 24.98 43.52 4.45
121 122 3.825611 CCAATTTCGGCGCCTGGG 61.826 66.667 26.68 8.93 0.00 4.45
122 123 3.825611 CAATTTCGGCGCCTGGGG 61.826 66.667 26.68 9.07 0.00 4.96
141 142 4.477975 CGAGCTGGGGACGACGAC 62.478 72.222 0.00 0.00 0.00 4.34
142 143 3.063084 GAGCTGGGGACGACGACT 61.063 66.667 0.00 0.00 0.00 4.18
143 144 3.343788 GAGCTGGGGACGACGACTG 62.344 68.421 0.00 0.00 0.00 3.51
144 145 4.436998 GCTGGGGACGACGACTGG 62.437 72.222 0.00 0.00 0.00 4.00
145 146 2.675423 CTGGGGACGACGACTGGA 60.675 66.667 0.00 0.00 0.00 3.86
146 147 2.987547 TGGGGACGACGACTGGAC 60.988 66.667 0.00 0.00 0.00 4.02
147 148 4.112341 GGGGACGACGACTGGACG 62.112 72.222 0.00 0.00 39.31 4.79
148 149 4.773117 GGGACGACGACTGGACGC 62.773 72.222 0.00 0.00 36.70 5.19
149 150 4.034258 GGACGACGACTGGACGCA 62.034 66.667 0.00 0.00 36.70 5.24
150 151 2.050714 GACGACGACTGGACGCAA 60.051 61.111 0.00 0.00 36.70 4.85
151 152 1.659335 GACGACGACTGGACGCAAA 60.659 57.895 0.00 0.00 36.70 3.68
152 153 1.210545 GACGACGACTGGACGCAAAA 61.211 55.000 0.00 0.00 36.70 2.44
153 154 1.200839 CGACGACTGGACGCAAAAC 59.799 57.895 0.00 0.00 36.70 2.43
154 155 1.568025 GACGACTGGACGCAAAACC 59.432 57.895 0.00 0.00 36.70 3.27
155 156 2.154427 GACGACTGGACGCAAAACCG 62.154 60.000 0.00 0.00 36.70 4.44
156 157 2.251371 GACTGGACGCAAAACCGC 59.749 61.111 0.00 0.00 0.00 5.68
157 158 3.249973 GACTGGACGCAAAACCGCC 62.250 63.158 0.00 0.00 0.00 6.13
158 159 4.038080 CTGGACGCAAAACCGCCC 62.038 66.667 0.00 0.00 0.00 6.13
173 174 4.169696 CCCCCAGCGCCGATTGTA 62.170 66.667 2.29 0.00 0.00 2.41
174 175 2.111043 CCCCAGCGCCGATTGTAT 59.889 61.111 2.29 0.00 0.00 2.29
175 176 1.961277 CCCCAGCGCCGATTGTATC 60.961 63.158 2.29 0.00 0.00 2.24
183 184 4.027755 CGATTGTATCGCCGGCTT 57.972 55.556 26.68 14.63 46.55 4.35
184 185 1.564622 CGATTGTATCGCCGGCTTG 59.435 57.895 26.68 10.37 46.55 4.01
185 186 1.279840 GATTGTATCGCCGGCTTGC 59.720 57.895 26.68 15.77 0.00 4.01
186 187 2.117941 GATTGTATCGCCGGCTTGCC 62.118 60.000 26.68 10.48 0.00 4.52
187 188 4.849310 TGTATCGCCGGCTTGCCC 62.849 66.667 26.68 8.94 0.00 5.36
207 208 1.134128 CCCAGGGGGCAATTTTTATGC 60.134 52.381 0.00 0.00 43.08 3.14
208 209 1.473080 CCAGGGGGCAATTTTTATGCG 60.473 52.381 0.00 0.00 44.75 4.73
209 210 1.206849 CAGGGGGCAATTTTTATGCGT 59.793 47.619 0.00 0.00 44.75 5.24
210 211 1.480545 AGGGGGCAATTTTTATGCGTC 59.519 47.619 0.00 0.00 44.75 5.19
211 212 1.472552 GGGGGCAATTTTTATGCGTCC 60.473 52.381 0.00 0.00 44.75 4.79
212 213 1.480545 GGGGCAATTTTTATGCGTCCT 59.519 47.619 0.00 0.00 44.75 3.85
213 214 2.539476 GGGCAATTTTTATGCGTCCTG 58.461 47.619 0.00 0.00 44.75 3.86
214 215 2.539476 GGCAATTTTTATGCGTCCTGG 58.461 47.619 0.00 0.00 44.75 4.45
215 216 2.539476 GCAATTTTTATGCGTCCTGGG 58.461 47.619 0.00 0.00 33.57 4.45
216 217 2.738321 GCAATTTTTATGCGTCCTGGGG 60.738 50.000 0.00 0.00 33.57 4.96
217 218 1.775385 ATTTTTATGCGTCCTGGGGG 58.225 50.000 0.00 0.00 0.00 5.40
238 239 4.115199 GGGGCAACGGCTGGAGAT 62.115 66.667 0.00 0.00 40.87 2.75
239 240 2.825836 GGGCAACGGCTGGAGATG 60.826 66.667 0.00 0.00 40.87 2.90
240 241 3.512516 GGCAACGGCTGGAGATGC 61.513 66.667 0.00 1.80 40.87 3.91
241 242 3.512516 GCAACGGCTGGAGATGCC 61.513 66.667 0.00 0.00 46.42 4.40
247 248 1.453669 GGCTGGAGATGCCCTAAGG 59.546 63.158 0.00 0.00 44.32 2.69
257 258 4.176752 CCCTAAGGGCAGGTCCGC 62.177 72.222 0.00 0.00 35.35 5.54
275 276 4.140599 CGCTGCGCTCCTTCCTCT 62.141 66.667 9.88 0.00 0.00 3.69
276 277 2.202864 GCTGCGCTCCTTCCTCTC 60.203 66.667 9.73 0.00 0.00 3.20
277 278 2.720134 GCTGCGCTCCTTCCTCTCT 61.720 63.158 9.73 0.00 0.00 3.10
278 279 1.437160 CTGCGCTCCTTCCTCTCTC 59.563 63.158 9.73 0.00 0.00 3.20
279 280 1.000270 TGCGCTCCTTCCTCTCTCT 60.000 57.895 9.73 0.00 0.00 3.10
280 281 1.034838 TGCGCTCCTTCCTCTCTCTC 61.035 60.000 9.73 0.00 0.00 3.20
281 282 0.751643 GCGCTCCTTCCTCTCTCTCT 60.752 60.000 0.00 0.00 0.00 3.10
282 283 1.308998 CGCTCCTTCCTCTCTCTCTC 58.691 60.000 0.00 0.00 0.00 3.20
283 284 1.134098 CGCTCCTTCCTCTCTCTCTCT 60.134 57.143 0.00 0.00 0.00 3.10
284 285 2.576615 GCTCCTTCCTCTCTCTCTCTC 58.423 57.143 0.00 0.00 0.00 3.20
285 286 2.173569 GCTCCTTCCTCTCTCTCTCTCT 59.826 54.545 0.00 0.00 0.00 3.10
286 287 3.745797 GCTCCTTCCTCTCTCTCTCTCTC 60.746 56.522 0.00 0.00 0.00 3.20
287 288 3.713764 CTCCTTCCTCTCTCTCTCTCTCT 59.286 52.174 0.00 0.00 0.00 3.10
288 289 3.711704 TCCTTCCTCTCTCTCTCTCTCTC 59.288 52.174 0.00 0.00 0.00 3.20
289 290 3.713764 CCTTCCTCTCTCTCTCTCTCTCT 59.286 52.174 0.00 0.00 0.00 3.10
290 291 4.202305 CCTTCCTCTCTCTCTCTCTCTCTC 60.202 54.167 0.00 0.00 0.00 3.20
291 292 4.271807 TCCTCTCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
292 293 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
293 294 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
294 295 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
295 296 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
296 297 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
297 298 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
298 299 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
299 300 3.386078 TCTCTCTCTCTCTCTCTCTCTGC 59.614 52.174 0.00 0.00 0.00 4.26
300 301 3.378512 TCTCTCTCTCTCTCTCTCTGCT 58.621 50.000 0.00 0.00 0.00 4.24
301 302 4.546674 TCTCTCTCTCTCTCTCTCTGCTA 58.453 47.826 0.00 0.00 0.00 3.49
302 303 5.150715 TCTCTCTCTCTCTCTCTCTGCTAT 58.849 45.833 0.00 0.00 0.00 2.97
303 304 5.244851 TCTCTCTCTCTCTCTCTCTGCTATC 59.755 48.000 0.00 0.00 0.00 2.08
304 305 5.150715 TCTCTCTCTCTCTCTCTGCTATCT 58.849 45.833 0.00 0.00 0.00 1.98
305 306 5.244851 TCTCTCTCTCTCTCTCTGCTATCTC 59.755 48.000 0.00 0.00 0.00 2.75
306 307 5.150715 TCTCTCTCTCTCTCTGCTATCTCT 58.849 45.833 0.00 0.00 0.00 3.10
307 308 6.314917 TCTCTCTCTCTCTCTGCTATCTCTA 58.685 44.000 0.00 0.00 0.00 2.43
308 309 6.956435 TCTCTCTCTCTCTCTGCTATCTCTAT 59.044 42.308 0.00 0.00 0.00 1.98
309 310 7.123397 TCTCTCTCTCTCTCTGCTATCTCTATC 59.877 44.444 0.00 0.00 0.00 2.08
310 311 5.965922 TCTCTCTCTCTGCTATCTCTATCG 58.034 45.833 0.00 0.00 0.00 2.92
311 312 4.503910 TCTCTCTCTGCTATCTCTATCGC 58.496 47.826 0.00 0.00 0.00 4.58
312 313 4.222810 TCTCTCTCTGCTATCTCTATCGCT 59.777 45.833 0.00 0.00 0.00 4.93
313 314 4.905429 TCTCTCTGCTATCTCTATCGCTT 58.095 43.478 0.00 0.00 0.00 4.68
314 315 4.935205 TCTCTCTGCTATCTCTATCGCTTC 59.065 45.833 0.00 0.00 0.00 3.86
315 316 3.682377 TCTCTGCTATCTCTATCGCTTCG 59.318 47.826 0.00 0.00 0.00 3.79
316 317 3.665190 TCTGCTATCTCTATCGCTTCGA 58.335 45.455 0.00 0.00 41.13 3.71
317 318 3.433957 TCTGCTATCTCTATCGCTTCGAC 59.566 47.826 0.00 0.00 39.18 4.20
318 319 2.157863 TGCTATCTCTATCGCTTCGACG 59.842 50.000 0.00 0.00 39.18 5.12
320 321 2.953640 ATCTCTATCGCTTCGACGAC 57.046 50.000 0.00 0.00 46.28 4.34
321 322 0.575859 TCTCTATCGCTTCGACGACG 59.424 55.000 0.00 0.00 46.28 5.12
322 323 0.383246 CTCTATCGCTTCGACGACGG 60.383 60.000 7.55 0.00 46.28 4.79
323 324 1.368969 CTATCGCTTCGACGACGGG 60.369 63.158 11.53 11.53 46.28 5.28
324 325 3.459378 TATCGCTTCGACGACGGGC 62.459 63.158 12.72 11.09 46.28 6.13
328 329 4.409218 CTTCGACGACGGGCGGAA 62.409 66.667 8.66 1.00 46.49 4.30
329 330 4.409218 TTCGACGACGGGCGGAAG 62.409 66.667 8.66 0.00 46.49 3.46
339 340 4.547367 GGCGGAAGGGACGGGATG 62.547 72.222 0.00 0.00 0.00 3.51
340 341 3.782443 GCGGAAGGGACGGGATGT 61.782 66.667 0.00 0.00 0.00 3.06
341 342 2.428925 GCGGAAGGGACGGGATGTA 61.429 63.158 0.00 0.00 0.00 2.29
342 343 1.963464 GCGGAAGGGACGGGATGTAA 61.963 60.000 0.00 0.00 0.00 2.41
343 344 0.104304 CGGAAGGGACGGGATGTAAG 59.896 60.000 0.00 0.00 0.00 2.34
344 345 0.468648 GGAAGGGACGGGATGTAAGG 59.531 60.000 0.00 0.00 0.00 2.69
345 346 0.179054 GAAGGGACGGGATGTAAGGC 60.179 60.000 0.00 0.00 0.00 4.35
346 347 0.912487 AAGGGACGGGATGTAAGGCA 60.912 55.000 0.00 0.00 0.00 4.75
347 348 0.694444 AGGGACGGGATGTAAGGCAT 60.694 55.000 0.00 0.00 41.24 4.40
348 349 0.182775 GGGACGGGATGTAAGGCATT 59.817 55.000 0.00 0.00 38.06 3.56
349 350 1.594331 GGACGGGATGTAAGGCATTC 58.406 55.000 0.00 0.00 38.06 2.67
361 362 2.522013 AGGCATTCCCTTCCCTAGAT 57.478 50.000 0.00 0.00 43.06 1.98
362 363 2.343625 AGGCATTCCCTTCCCTAGATC 58.656 52.381 0.00 0.00 43.06 2.75
363 364 1.352687 GGCATTCCCTTCCCTAGATCC 59.647 57.143 0.00 0.00 0.00 3.36
364 365 2.057922 GCATTCCCTTCCCTAGATCCA 58.942 52.381 0.00 0.00 0.00 3.41
365 366 2.039613 GCATTCCCTTCCCTAGATCCAG 59.960 54.545 0.00 0.00 0.00 3.86
366 367 3.591789 CATTCCCTTCCCTAGATCCAGA 58.408 50.000 0.00 0.00 0.00 3.86
367 368 2.777459 TCCCTTCCCTAGATCCAGAC 57.223 55.000 0.00 0.00 0.00 3.51
368 369 1.133450 TCCCTTCCCTAGATCCAGACG 60.133 57.143 0.00 0.00 0.00 4.18
369 370 1.333177 CCTTCCCTAGATCCAGACGG 58.667 60.000 0.00 0.00 0.00 4.79
370 371 0.676736 CTTCCCTAGATCCAGACGGC 59.323 60.000 0.00 0.00 0.00 5.68
371 372 0.032515 TTCCCTAGATCCAGACGGCA 60.033 55.000 0.00 0.00 0.00 5.69
372 373 0.755698 TCCCTAGATCCAGACGGCAC 60.756 60.000 0.00 0.00 0.00 5.01
385 386 4.832608 GGCACGGGACATCGGGTC 62.833 72.222 0.00 0.20 46.20 4.46
393 394 3.384816 GACATCGGGTCATGATGCA 57.615 52.632 0.00 0.00 45.61 3.96
394 395 1.224075 GACATCGGGTCATGATGCAG 58.776 55.000 0.00 0.00 45.61 4.41
395 396 0.816825 ACATCGGGTCATGATGCAGC 60.817 55.000 0.00 0.00 45.61 5.25
396 397 1.596203 ATCGGGTCATGATGCAGCG 60.596 57.895 0.00 0.00 0.00 5.18
397 398 3.945434 CGGGTCATGATGCAGCGC 61.945 66.667 0.00 0.00 0.00 5.92
398 399 2.825387 GGGTCATGATGCAGCGCA 60.825 61.111 11.47 5.73 44.86 6.09
407 408 2.045143 TGCAGCGCATGGGATTGA 60.045 55.556 14.90 0.00 31.71 2.57
408 409 1.454295 TGCAGCGCATGGGATTGAT 60.454 52.632 14.90 0.00 31.71 2.57
409 410 1.007734 GCAGCGCATGGGATTGATG 60.008 57.895 14.90 4.70 0.00 3.07
410 411 1.658114 CAGCGCATGGGATTGATGG 59.342 57.895 14.90 0.00 0.00 3.51
411 412 2.198287 AGCGCATGGGATTGATGGC 61.198 57.895 14.90 0.00 0.00 4.40
412 413 2.640989 CGCATGGGATTGATGGCG 59.359 61.111 3.11 0.00 0.00 5.69
413 414 1.893335 CGCATGGGATTGATGGCGA 60.893 57.895 3.11 0.00 0.00 5.54
414 415 1.848932 CGCATGGGATTGATGGCGAG 61.849 60.000 3.11 0.00 0.00 5.03
415 416 1.954528 CATGGGATTGATGGCGAGC 59.045 57.895 0.00 0.00 0.00 5.03
416 417 0.820482 CATGGGATTGATGGCGAGCA 60.820 55.000 0.00 0.00 0.00 4.26
417 418 0.820891 ATGGGATTGATGGCGAGCAC 60.821 55.000 0.00 0.00 0.00 4.40
418 419 1.451927 GGGATTGATGGCGAGCACA 60.452 57.895 0.00 0.00 0.00 4.57
419 420 1.442526 GGGATTGATGGCGAGCACAG 61.443 60.000 0.00 0.00 0.00 3.66
420 421 1.442526 GGATTGATGGCGAGCACAGG 61.443 60.000 0.00 0.00 0.00 4.00
421 422 2.056481 GATTGATGGCGAGCACAGGC 62.056 60.000 0.00 0.00 41.61 4.85
432 433 3.434319 CACAGGCGGCGATGCTTT 61.434 61.111 12.98 0.00 34.52 3.51
433 434 2.672996 ACAGGCGGCGATGCTTTT 60.673 55.556 12.98 0.00 34.52 2.27
434 435 2.100991 CAGGCGGCGATGCTTTTC 59.899 61.111 12.98 0.00 34.52 2.29
435 436 2.045926 AGGCGGCGATGCTTTTCT 60.046 55.556 12.98 0.00 34.52 2.52
436 437 2.109126 AGGCGGCGATGCTTTTCTC 61.109 57.895 12.98 0.00 34.52 2.87
437 438 2.405191 GCGGCGATGCTTTTCTCC 59.595 61.111 12.98 0.00 0.00 3.71
438 439 2.703409 CGGCGATGCTTTTCTCCG 59.297 61.111 0.00 0.29 37.62 4.63
439 440 1.809619 CGGCGATGCTTTTCTCCGA 60.810 57.895 0.00 0.00 44.72 4.55
440 441 1.716172 GGCGATGCTTTTCTCCGAC 59.284 57.895 0.00 0.00 0.00 4.79
441 442 1.019278 GGCGATGCTTTTCTCCGACA 61.019 55.000 0.00 0.00 0.00 4.35
442 443 0.371645 GCGATGCTTTTCTCCGACAG 59.628 55.000 0.00 0.00 0.00 3.51
443 444 1.996292 CGATGCTTTTCTCCGACAGA 58.004 50.000 0.00 0.00 0.00 3.41
444 445 1.923204 CGATGCTTTTCTCCGACAGAG 59.077 52.381 0.00 0.00 44.75 3.35
451 452 4.244326 CTCCGACAGAGACGGGAT 57.756 61.111 7.94 0.00 46.50 3.85
452 453 2.026522 CTCCGACAGAGACGGGATC 58.973 63.158 7.94 0.00 46.50 3.36
453 454 1.777030 CTCCGACAGAGACGGGATCG 61.777 65.000 7.94 0.00 46.50 3.69
454 455 2.716244 CGACAGAGACGGGATCGG 59.284 66.667 0.00 0.00 41.39 4.18
455 456 2.835705 CGACAGAGACGGGATCGGG 61.836 68.421 0.00 0.00 41.39 5.14
456 457 1.453379 GACAGAGACGGGATCGGGA 60.453 63.158 0.00 0.00 41.39 5.14
457 458 1.448922 GACAGAGACGGGATCGGGAG 61.449 65.000 0.00 0.00 41.39 4.30
458 459 2.519780 AGAGACGGGATCGGGAGC 60.520 66.667 0.00 0.00 41.39 4.70
459 460 3.967335 GAGACGGGATCGGGAGCG 61.967 72.222 0.00 0.00 41.39 5.03
460 461 4.501285 AGACGGGATCGGGAGCGA 62.501 66.667 0.00 0.00 41.39 4.93
461 462 3.967335 GACGGGATCGGGAGCGAG 61.967 72.222 0.00 0.00 41.39 5.03
476 477 3.093172 GAGGGGGCTTGGGGAGAG 61.093 72.222 0.00 0.00 0.00 3.20
477 478 3.626596 AGGGGGCTTGGGGAGAGA 61.627 66.667 0.00 0.00 0.00 3.10
478 479 2.368878 GGGGGCTTGGGGAGAGAT 60.369 66.667 0.00 0.00 0.00 2.75
479 480 2.761465 GGGGGCTTGGGGAGAGATG 61.761 68.421 0.00 0.00 0.00 2.90
480 481 2.761465 GGGGCTTGGGGAGAGATGG 61.761 68.421 0.00 0.00 0.00 3.51
481 482 2.761465 GGGCTTGGGGAGAGATGGG 61.761 68.421 0.00 0.00 0.00 4.00
482 483 2.761465 GGCTTGGGGAGAGATGGGG 61.761 68.421 0.00 0.00 0.00 4.96
483 484 2.761465 GCTTGGGGAGAGATGGGGG 61.761 68.421 0.00 0.00 0.00 5.40
484 485 2.696125 TTGGGGAGAGATGGGGGC 60.696 66.667 0.00 0.00 0.00 5.80
487 488 3.866582 GGGAGAGATGGGGGCGTG 61.867 72.222 0.00 0.00 0.00 5.34
488 489 4.554036 GGAGAGATGGGGGCGTGC 62.554 72.222 0.00 0.00 0.00 5.34
489 490 4.899239 GAGAGATGGGGGCGTGCG 62.899 72.222 0.00 0.00 0.00 5.34
500 501 4.627114 GCGTGCGACGTGTGTGTG 62.627 66.667 0.00 0.00 44.73 3.82
501 502 4.627114 CGTGCGACGTGTGTGTGC 62.627 66.667 0.00 0.00 36.74 4.57
502 503 4.627114 GTGCGACGTGTGTGTGCG 62.627 66.667 0.00 0.00 0.00 5.34
508 509 4.918060 CGTGTGTGTGCGCGTGTG 62.918 66.667 8.43 0.00 37.56 3.82
509 510 4.589700 GTGTGTGTGCGCGTGTGG 62.590 66.667 8.43 0.00 0.00 4.17
519 520 4.264638 GCGTGTGGCGGCAGTTTT 62.265 61.111 13.91 0.00 41.69 2.43
520 521 2.411290 CGTGTGGCGGCAGTTTTT 59.589 55.556 13.91 0.00 36.85 1.94
537 538 1.323412 TTTTTGACGATGGGTGGTGG 58.677 50.000 0.00 0.00 0.00 4.61
538 539 0.538516 TTTTGACGATGGGTGGTGGG 60.539 55.000 0.00 0.00 0.00 4.61
539 540 1.419720 TTTGACGATGGGTGGTGGGA 61.420 55.000 0.00 0.00 0.00 4.37
540 541 1.836999 TTGACGATGGGTGGTGGGAG 61.837 60.000 0.00 0.00 0.00 4.30
541 542 3.682292 GACGATGGGTGGTGGGAGC 62.682 68.421 0.00 0.00 0.00 4.70
542 543 3.716195 CGATGGGTGGTGGGAGCA 61.716 66.667 0.00 0.00 0.00 4.26
543 544 3.010144 GATGGGTGGTGGGAGCAT 58.990 61.111 0.00 0.00 0.00 3.79
544 545 1.454479 GATGGGTGGTGGGAGCATG 60.454 63.158 0.00 0.00 0.00 4.06
545 546 3.667217 ATGGGTGGTGGGAGCATGC 62.667 63.158 10.51 10.51 0.00 4.06
547 548 4.722700 GGTGGTGGGAGCATGCGT 62.723 66.667 13.01 0.00 0.00 5.24
548 549 2.672996 GTGGTGGGAGCATGCGTT 60.673 61.111 13.01 0.00 0.00 4.84
549 550 2.672651 TGGTGGGAGCATGCGTTG 60.673 61.111 13.01 0.00 0.00 4.10
550 551 3.443045 GGTGGGAGCATGCGTTGG 61.443 66.667 13.01 0.00 0.00 3.77
551 552 2.672996 GTGGGAGCATGCGTTGGT 60.673 61.111 13.01 0.00 39.22 3.67
552 553 2.115052 TGGGAGCATGCGTTGGTT 59.885 55.556 13.01 0.00 35.82 3.67
553 554 1.530419 TGGGAGCATGCGTTGGTTT 60.530 52.632 13.01 0.00 35.82 3.27
554 555 1.112315 TGGGAGCATGCGTTGGTTTT 61.112 50.000 13.01 0.00 35.82 2.43
555 556 0.033366 GGGAGCATGCGTTGGTTTTT 59.967 50.000 13.01 0.00 35.82 1.94
556 557 1.139163 GGAGCATGCGTTGGTTTTTG 58.861 50.000 13.01 0.00 35.82 2.44
557 558 1.537990 GGAGCATGCGTTGGTTTTTGT 60.538 47.619 13.01 0.00 35.82 2.83
558 559 1.786579 GAGCATGCGTTGGTTTTTGTC 59.213 47.619 13.01 0.00 35.82 3.18
559 560 1.408702 AGCATGCGTTGGTTTTTGTCT 59.591 42.857 13.01 0.00 29.87 3.41
560 561 2.159114 AGCATGCGTTGGTTTTTGTCTT 60.159 40.909 13.01 0.00 29.87 3.01
561 562 2.218530 GCATGCGTTGGTTTTTGTCTTC 59.781 45.455 0.00 0.00 0.00 2.87
562 563 2.181426 TGCGTTGGTTTTTGTCTTCG 57.819 45.000 0.00 0.00 0.00 3.79
563 564 1.469308 TGCGTTGGTTTTTGTCTTCGT 59.531 42.857 0.00 0.00 0.00 3.85
564 565 1.843753 GCGTTGGTTTTTGTCTTCGTG 59.156 47.619 0.00 0.00 0.00 4.35
565 566 1.843753 CGTTGGTTTTTGTCTTCGTGC 59.156 47.619 0.00 0.00 0.00 5.34
566 567 1.843753 GTTGGTTTTTGTCTTCGTGCG 59.156 47.619 0.00 0.00 0.00 5.34
567 568 1.370609 TGGTTTTTGTCTTCGTGCGA 58.629 45.000 0.00 0.00 0.00 5.10
568 569 1.944024 TGGTTTTTGTCTTCGTGCGAT 59.056 42.857 0.00 0.00 0.00 4.58
569 570 2.286713 TGGTTTTTGTCTTCGTGCGATG 60.287 45.455 0.00 0.00 0.00 3.84
570 571 2.307049 GTTTTTGTCTTCGTGCGATGG 58.693 47.619 7.46 0.00 0.00 3.51
571 572 1.872388 TTTTGTCTTCGTGCGATGGA 58.128 45.000 7.46 1.77 0.00 3.41
572 573 1.428448 TTTGTCTTCGTGCGATGGAG 58.572 50.000 7.46 0.00 0.00 3.86
573 574 0.389817 TTGTCTTCGTGCGATGGAGG 60.390 55.000 7.46 0.00 0.00 4.30
574 575 1.519455 GTCTTCGTGCGATGGAGGG 60.519 63.158 7.46 0.00 0.00 4.30
575 576 2.202932 CTTCGTGCGATGGAGGGG 60.203 66.667 0.00 0.00 0.00 4.79
576 577 2.682136 TTCGTGCGATGGAGGGGA 60.682 61.111 0.00 0.00 0.00 4.81
577 578 2.032860 CTTCGTGCGATGGAGGGGAT 62.033 60.000 0.00 0.00 0.00 3.85
578 579 2.280389 CGTGCGATGGAGGGGATG 60.280 66.667 0.00 0.00 0.00 3.51
579 580 2.796193 CGTGCGATGGAGGGGATGA 61.796 63.158 0.00 0.00 0.00 2.92
580 581 1.227674 GTGCGATGGAGGGGATGAC 60.228 63.158 0.00 0.00 0.00 3.06
581 582 2.029666 GCGATGGAGGGGATGACG 59.970 66.667 0.00 0.00 0.00 4.35
582 583 2.498941 GCGATGGAGGGGATGACGA 61.499 63.158 0.00 0.00 0.00 4.20
583 584 2.028125 GCGATGGAGGGGATGACGAA 62.028 60.000 0.00 0.00 0.00 3.85
584 585 0.032678 CGATGGAGGGGATGACGAAG 59.967 60.000 0.00 0.00 0.00 3.79
585 586 0.394565 GATGGAGGGGATGACGAAGG 59.605 60.000 0.00 0.00 0.00 3.46
586 587 1.056700 ATGGAGGGGATGACGAAGGG 61.057 60.000 0.00 0.00 0.00 3.95
587 588 1.382695 GGAGGGGATGACGAAGGGA 60.383 63.158 0.00 0.00 0.00 4.20
588 589 1.403687 GGAGGGGATGACGAAGGGAG 61.404 65.000 0.00 0.00 0.00 4.30
589 590 1.383248 AGGGGATGACGAAGGGAGG 60.383 63.158 0.00 0.00 0.00 4.30
590 591 1.689582 GGGGATGACGAAGGGAGGT 60.690 63.158 0.00 0.00 0.00 3.85
591 592 1.522569 GGGATGACGAAGGGAGGTG 59.477 63.158 0.00 0.00 0.00 4.00
592 593 1.522569 GGATGACGAAGGGAGGTGG 59.477 63.158 0.00 0.00 0.00 4.61
593 594 1.522569 GATGACGAAGGGAGGTGGG 59.477 63.158 0.00 0.00 0.00 4.61
594 595 1.972660 GATGACGAAGGGAGGTGGGG 61.973 65.000 0.00 0.00 0.00 4.96
595 596 2.284405 GACGAAGGGAGGTGGGGA 60.284 66.667 0.00 0.00 0.00 4.81
596 597 1.689582 GACGAAGGGAGGTGGGGAT 60.690 63.158 0.00 0.00 0.00 3.85
597 598 1.687297 GACGAAGGGAGGTGGGGATC 61.687 65.000 0.00 0.00 0.00 3.36
598 599 2.797278 CGAAGGGAGGTGGGGATCG 61.797 68.421 0.00 0.00 0.00 3.69
599 600 1.382695 GAAGGGAGGTGGGGATCGA 60.383 63.158 0.00 0.00 0.00 3.59
600 601 0.981277 GAAGGGAGGTGGGGATCGAA 60.981 60.000 0.00 0.00 0.00 3.71
601 602 0.983378 AAGGGAGGTGGGGATCGAAG 60.983 60.000 0.00 0.00 0.00 3.79
602 603 2.444256 GGGAGGTGGGGATCGAAGG 61.444 68.421 0.00 0.00 0.00 3.46
603 604 1.382695 GGAGGTGGGGATCGAAGGA 60.383 63.158 0.00 0.00 0.00 3.36
604 605 1.403687 GGAGGTGGGGATCGAAGGAG 61.404 65.000 0.00 0.00 0.00 3.69
605 606 1.383248 AGGTGGGGATCGAAGGAGG 60.383 63.158 0.00 0.00 0.00 4.30
606 607 1.689582 GGTGGGGATCGAAGGAGGT 60.690 63.158 0.00 0.00 0.00 3.85
607 608 0.398098 GGTGGGGATCGAAGGAGGTA 60.398 60.000 0.00 0.00 0.00 3.08
608 609 1.041437 GTGGGGATCGAAGGAGGTAG 58.959 60.000 0.00 0.00 0.00 3.18
609 610 0.931468 TGGGGATCGAAGGAGGTAGA 59.069 55.000 0.00 0.00 0.00 2.59
610 611 1.289830 TGGGGATCGAAGGAGGTAGAA 59.710 52.381 0.00 0.00 0.00 2.10
611 612 1.687660 GGGGATCGAAGGAGGTAGAAC 59.312 57.143 0.00 0.00 0.00 3.01
612 613 1.687660 GGGATCGAAGGAGGTAGAACC 59.312 57.143 0.00 0.00 38.99 3.62
613 614 2.385803 GGATCGAAGGAGGTAGAACCA 58.614 52.381 0.00 0.00 41.95 3.67
614 615 2.966516 GGATCGAAGGAGGTAGAACCAT 59.033 50.000 0.00 0.00 41.95 3.55
615 616 3.006003 GGATCGAAGGAGGTAGAACCATC 59.994 52.174 0.00 0.00 41.95 3.51
616 617 3.095912 TCGAAGGAGGTAGAACCATCA 57.904 47.619 0.00 0.00 41.95 3.07
617 618 2.758979 TCGAAGGAGGTAGAACCATCAC 59.241 50.000 0.00 0.00 41.95 3.06
618 619 2.479730 CGAAGGAGGTAGAACCATCACG 60.480 54.545 0.00 0.00 41.95 4.35
619 620 2.526888 AGGAGGTAGAACCATCACGA 57.473 50.000 0.00 0.00 41.95 4.35
620 621 2.100989 AGGAGGTAGAACCATCACGAC 58.899 52.381 0.00 0.00 41.95 4.34
621 622 1.202268 GGAGGTAGAACCATCACGACG 60.202 57.143 0.00 0.00 41.95 5.12
622 623 1.471684 GAGGTAGAACCATCACGACGT 59.528 52.381 0.00 0.00 41.95 4.34
623 624 1.891150 AGGTAGAACCATCACGACGTT 59.109 47.619 0.00 0.00 41.95 3.99
624 625 2.094854 AGGTAGAACCATCACGACGTTC 60.095 50.000 0.00 0.00 41.95 3.95
625 626 1.909532 GTAGAACCATCACGACGTTCG 59.090 52.381 0.00 0.00 46.93 3.95
626 627 0.594602 AGAACCATCACGACGTTCGA 59.405 50.000 13.06 0.00 43.74 3.71
627 628 1.201647 AGAACCATCACGACGTTCGAT 59.798 47.619 13.06 0.00 43.74 3.59
628 629 1.582502 GAACCATCACGACGTTCGATC 59.417 52.381 13.06 0.00 43.74 3.69
629 630 0.179145 ACCATCACGACGTTCGATCC 60.179 55.000 13.06 0.00 43.74 3.36
630 631 0.870307 CCATCACGACGTTCGATCCC 60.870 60.000 13.06 0.00 43.74 3.85
631 632 0.870307 CATCACGACGTTCGATCCCC 60.870 60.000 13.06 0.00 43.74 4.81
632 633 1.035932 ATCACGACGTTCGATCCCCT 61.036 55.000 13.06 0.00 43.74 4.79
633 634 1.214589 CACGACGTTCGATCCCCTT 59.785 57.895 13.06 0.00 43.74 3.95
634 635 0.389426 CACGACGTTCGATCCCCTTT 60.389 55.000 13.06 0.00 43.74 3.11
635 636 1.135315 CACGACGTTCGATCCCCTTTA 60.135 52.381 13.06 0.00 43.74 1.85
636 637 1.545582 ACGACGTTCGATCCCCTTTAA 59.454 47.619 13.06 0.00 43.74 1.52
637 638 2.167075 ACGACGTTCGATCCCCTTTAAT 59.833 45.455 13.06 0.00 43.74 1.40
638 639 3.381272 ACGACGTTCGATCCCCTTTAATA 59.619 43.478 13.06 0.00 43.74 0.98
639 640 3.979495 CGACGTTCGATCCCCTTTAATAG 59.021 47.826 0.00 0.00 43.74 1.73
640 641 4.498682 CGACGTTCGATCCCCTTTAATAGT 60.499 45.833 0.00 0.00 43.74 2.12
641 642 5.277974 CGACGTTCGATCCCCTTTAATAGTA 60.278 44.000 0.00 0.00 43.74 1.82
642 643 6.569226 CGACGTTCGATCCCCTTTAATAGTAT 60.569 42.308 0.00 0.00 43.74 2.12
643 644 7.059202 ACGTTCGATCCCCTTTAATAGTATT 57.941 36.000 0.17 0.17 0.00 1.89
644 645 7.503549 ACGTTCGATCCCCTTTAATAGTATTT 58.496 34.615 0.00 0.00 0.00 1.40
645 646 8.641541 ACGTTCGATCCCCTTTAATAGTATTTA 58.358 33.333 0.00 0.00 0.00 1.40
646 647 9.480053 CGTTCGATCCCCTTTAATAGTATTTAA 57.520 33.333 0.00 0.00 0.00 1.52
674 675 6.441088 AGAGACTATGGAATATTTGGACCC 57.559 41.667 0.00 0.00 0.00 4.46
675 676 5.012148 AGAGACTATGGAATATTTGGACCCG 59.988 44.000 0.00 0.00 0.00 5.28
679 680 0.178973 GGAATATTTGGACCCGGGGG 60.179 60.000 27.92 5.70 42.03 5.40
726 728 3.302344 GTGGGTTTGGGTGCGCAT 61.302 61.111 15.91 0.00 0.00 4.73
727 729 1.974343 GTGGGTTTGGGTGCGCATA 60.974 57.895 15.91 0.00 0.00 3.14
729 731 2.483288 GGTTTGGGTGCGCATACG 59.517 61.111 15.91 0.00 44.07 3.06
730 732 2.036006 GGTTTGGGTGCGCATACGA 61.036 57.895 15.91 6.77 43.93 3.43
731 733 1.579084 GGTTTGGGTGCGCATACGAA 61.579 55.000 15.91 13.12 43.93 3.85
864 873 4.656117 CCGGCGCCAACCCAAAAC 62.656 66.667 28.98 0.00 0.00 2.43
865 874 3.905678 CGGCGCCAACCCAAAACA 61.906 61.111 28.98 0.00 0.00 2.83
4418 4938 4.755411 CCTCATCAAAGGTACGTACATGT 58.245 43.478 26.02 12.87 0.00 3.21
4421 4941 5.898174 TCATCAAAGGTACGTACATGTAGG 58.102 41.667 26.02 21.04 0.00 3.18
4422 4942 5.653330 TCATCAAAGGTACGTACATGTAGGA 59.347 40.000 27.55 14.96 0.00 2.94
4423 4943 6.322969 TCATCAAAGGTACGTACATGTAGGAT 59.677 38.462 27.55 16.32 0.00 3.24
4425 4945 6.334989 TCAAAGGTACGTACATGTAGGATTG 58.665 40.000 27.55 18.14 0.00 2.67
4426 4946 4.931661 AGGTACGTACATGTAGGATTGG 57.068 45.455 27.55 7.32 0.00 3.16
4427 4947 4.539726 AGGTACGTACATGTAGGATTGGA 58.460 43.478 27.55 8.18 0.00 3.53
4428 4948 4.340381 AGGTACGTACATGTAGGATTGGAC 59.660 45.833 27.55 16.72 0.00 4.02
4434 4954 3.808728 ACATGTAGGATTGGACATTCGG 58.191 45.455 0.00 0.00 34.01 4.30
4435 4955 3.454447 ACATGTAGGATTGGACATTCGGA 59.546 43.478 0.00 0.00 34.01 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.067833 TCGGCGTTCAATTATCAACACA 58.932 40.909 6.85 0.00 0.00 3.72
1 2 3.369756 TCTCGGCGTTCAATTATCAACAC 59.630 43.478 6.85 0.00 0.00 3.32
2 3 3.369756 GTCTCGGCGTTCAATTATCAACA 59.630 43.478 6.85 0.00 0.00 3.33
3 4 3.369756 TGTCTCGGCGTTCAATTATCAAC 59.630 43.478 6.85 0.00 0.00 3.18
5 6 2.927477 GTGTCTCGGCGTTCAATTATCA 59.073 45.455 6.85 0.00 0.00 2.15
6 7 2.034842 CGTGTCTCGGCGTTCAATTATC 60.035 50.000 6.85 0.00 35.71 1.75
7 8 1.924524 CGTGTCTCGGCGTTCAATTAT 59.075 47.619 6.85 0.00 35.71 1.28
8 9 1.342555 CGTGTCTCGGCGTTCAATTA 58.657 50.000 6.85 0.00 35.71 1.40
9 10 2.150424 CGTGTCTCGGCGTTCAATT 58.850 52.632 6.85 0.00 35.71 2.32
10 11 3.856508 CGTGTCTCGGCGTTCAAT 58.143 55.556 6.85 0.00 35.71 2.57
19 20 2.355363 TGGTTTCGCCGTGTCTCG 60.355 61.111 0.00 0.00 41.21 4.04
20 21 2.654912 CGTGGTTTCGCCGTGTCTC 61.655 63.158 0.00 0.00 41.21 3.36
21 22 2.660552 CGTGGTTTCGCCGTGTCT 60.661 61.111 0.00 0.00 41.21 3.41
29 30 0.303493 CCATATTCGGCGTGGTTTCG 59.697 55.000 6.85 0.00 0.00 3.46
30 31 0.661020 CCCATATTCGGCGTGGTTTC 59.339 55.000 6.85 0.00 0.00 2.78
31 32 1.381165 GCCCATATTCGGCGTGGTTT 61.381 55.000 6.85 0.00 36.47 3.27
32 33 1.822186 GCCCATATTCGGCGTGGTT 60.822 57.895 6.85 0.00 36.47 3.67
33 34 2.203153 GCCCATATTCGGCGTGGT 60.203 61.111 6.85 0.00 36.47 4.16
38 39 2.633488 GAGAATAGGCCCATATTCGGC 58.367 52.381 15.47 10.24 43.79 5.54
39 40 2.893637 CGAGAATAGGCCCATATTCGG 58.106 52.381 15.47 10.10 43.79 4.30
40 41 2.271800 GCGAGAATAGGCCCATATTCG 58.728 52.381 15.47 13.38 43.79 3.34
41 42 2.633488 GGCGAGAATAGGCCCATATTC 58.367 52.381 14.20 14.20 43.64 1.75
42 43 2.789409 GGCGAGAATAGGCCCATATT 57.211 50.000 0.00 0.00 43.64 1.28
49 50 2.029838 CCATATGGGCGAGAATAGGC 57.970 55.000 14.52 0.00 34.95 3.93
61 62 1.818674 GCGAATAAAGGGCCCATATGG 59.181 52.381 27.56 15.41 37.09 2.74
62 63 1.818674 GGCGAATAAAGGGCCCATATG 59.181 52.381 27.56 11.89 41.01 1.78
63 64 1.613255 CGGCGAATAAAGGGCCCATAT 60.613 52.381 27.56 19.09 43.99 1.78
64 65 0.250553 CGGCGAATAAAGGGCCCATA 60.251 55.000 27.56 17.50 43.99 2.74
65 66 1.528309 CGGCGAATAAAGGGCCCAT 60.528 57.895 27.56 10.06 43.99 4.00
66 67 2.124487 CGGCGAATAAAGGGCCCA 60.124 61.111 27.56 2.74 43.99 5.36
67 68 1.033202 TTTCGGCGAATAAAGGGCCC 61.033 55.000 24.33 16.46 43.99 5.80
68 69 1.029681 ATTTCGGCGAATAAAGGGCC 58.970 50.000 24.33 0.00 43.42 5.80
69 70 2.459934 CAATTTCGGCGAATAAAGGGC 58.540 47.619 24.33 0.00 0.00 5.19
70 71 2.223711 CCCAATTTCGGCGAATAAAGGG 60.224 50.000 24.33 24.77 0.00 3.95
71 72 2.798145 GCCCAATTTCGGCGAATAAAGG 60.798 50.000 24.33 21.09 36.47 3.11
72 73 2.459934 GCCCAATTTCGGCGAATAAAG 58.540 47.619 24.33 13.17 36.47 1.85
73 74 2.570442 GCCCAATTTCGGCGAATAAA 57.430 45.000 24.33 9.26 36.47 1.40
81 82 0.318120 ACTTTGCAGCCCAATTTCGG 59.682 50.000 0.00 0.00 32.49 4.30
82 83 1.421382 CACTTTGCAGCCCAATTTCG 58.579 50.000 0.00 0.00 32.49 3.46
83 84 1.608801 CCCACTTTGCAGCCCAATTTC 60.609 52.381 0.00 0.00 32.49 2.17
84 85 0.397564 CCCACTTTGCAGCCCAATTT 59.602 50.000 0.00 0.00 32.49 1.82
85 86 2.060370 CCCACTTTGCAGCCCAATT 58.940 52.632 0.00 0.00 32.49 2.32
86 87 2.586293 GCCCACTTTGCAGCCCAAT 61.586 57.895 0.00 0.00 32.49 3.16
87 88 3.233231 GCCCACTTTGCAGCCCAA 61.233 61.111 0.00 0.00 0.00 4.12
90 91 2.115734 AATTGGCCCACTTTGCAGCC 62.116 55.000 0.00 5.48 45.96 4.85
91 92 0.250424 AAATTGGCCCACTTTGCAGC 60.250 50.000 0.00 0.00 0.00 5.25
92 93 1.799544 GAAATTGGCCCACTTTGCAG 58.200 50.000 3.51 0.00 0.00 4.41
93 94 0.033228 CGAAATTGGCCCACTTTGCA 59.967 50.000 3.51 0.00 0.00 4.08
94 95 0.670239 CCGAAATTGGCCCACTTTGC 60.670 55.000 3.51 0.00 0.00 3.68
95 96 3.512978 CCGAAATTGGCCCACTTTG 57.487 52.632 3.51 0.00 0.00 2.77
104 105 3.825611 CCCAGGCGCCGAAATTGG 61.826 66.667 23.20 22.32 0.00 3.16
105 106 3.825611 CCCCAGGCGCCGAAATTG 61.826 66.667 23.20 13.64 0.00 2.32
124 125 4.477975 GTCGTCGTCCCCAGCTCG 62.478 72.222 0.00 0.00 0.00 5.03
125 126 3.063084 AGTCGTCGTCCCCAGCTC 61.063 66.667 0.00 0.00 0.00 4.09
126 127 3.374402 CAGTCGTCGTCCCCAGCT 61.374 66.667 0.00 0.00 0.00 4.24
127 128 4.436998 CCAGTCGTCGTCCCCAGC 62.437 72.222 0.00 0.00 0.00 4.85
128 129 2.675423 TCCAGTCGTCGTCCCCAG 60.675 66.667 0.00 0.00 0.00 4.45
129 130 2.987547 GTCCAGTCGTCGTCCCCA 60.988 66.667 0.00 0.00 0.00 4.96
130 131 4.112341 CGTCCAGTCGTCGTCCCC 62.112 72.222 0.00 0.00 0.00 4.81
131 132 4.773117 GCGTCCAGTCGTCGTCCC 62.773 72.222 0.00 0.00 0.00 4.46
132 133 3.547249 TTGCGTCCAGTCGTCGTCC 62.547 63.158 0.00 0.00 0.00 4.79
133 134 1.210545 TTTTGCGTCCAGTCGTCGTC 61.211 55.000 0.00 0.00 0.00 4.20
134 135 1.227031 TTTTGCGTCCAGTCGTCGT 60.227 52.632 0.00 0.00 0.00 4.34
135 136 1.200839 GTTTTGCGTCCAGTCGTCG 59.799 57.895 0.00 0.00 0.00 5.12
136 137 1.568025 GGTTTTGCGTCCAGTCGTC 59.432 57.895 0.00 0.00 0.00 4.20
137 138 2.241880 CGGTTTTGCGTCCAGTCGT 61.242 57.895 0.00 0.00 0.00 4.34
138 139 2.549282 CGGTTTTGCGTCCAGTCG 59.451 61.111 0.00 0.00 0.00 4.18
139 140 2.251371 GCGGTTTTGCGTCCAGTC 59.749 61.111 0.00 0.00 0.00 3.51
140 141 3.284449 GGCGGTTTTGCGTCCAGT 61.284 61.111 0.00 0.00 35.06 4.00
141 142 4.038080 GGGCGGTTTTGCGTCCAG 62.038 66.667 0.00 0.00 35.06 3.86
156 157 3.476031 ATACAATCGGCGCTGGGGG 62.476 63.158 17.88 8.36 0.00 5.40
157 158 1.961277 GATACAATCGGCGCTGGGG 60.961 63.158 17.88 8.74 0.00 4.96
158 159 3.642755 GATACAATCGGCGCTGGG 58.357 61.111 17.88 9.12 0.00 4.45
167 168 1.279840 GCAAGCCGGCGATACAATC 59.720 57.895 23.20 1.67 0.00 2.67
168 169 2.186826 GGCAAGCCGGCGATACAAT 61.187 57.895 23.20 0.00 33.57 2.71
169 170 2.822255 GGCAAGCCGGCGATACAA 60.822 61.111 23.20 0.00 33.57 2.41
170 171 4.849310 GGGCAAGCCGGCGATACA 62.849 66.667 23.20 0.00 42.43 2.29
188 189 1.473080 CGCATAAAAATTGCCCCCTGG 60.473 52.381 0.00 0.00 36.75 4.45
189 190 1.206849 ACGCATAAAAATTGCCCCCTG 59.793 47.619 0.00 0.00 36.75 4.45
190 191 1.480545 GACGCATAAAAATTGCCCCCT 59.519 47.619 0.00 0.00 36.75 4.79
191 192 1.472552 GGACGCATAAAAATTGCCCCC 60.473 52.381 0.00 0.00 36.75 5.40
192 193 1.480545 AGGACGCATAAAAATTGCCCC 59.519 47.619 0.00 0.00 36.75 5.80
193 194 2.539476 CAGGACGCATAAAAATTGCCC 58.461 47.619 0.00 0.00 36.75 5.36
194 195 2.539476 CCAGGACGCATAAAAATTGCC 58.461 47.619 0.00 0.00 36.75 4.52
195 196 2.539476 CCCAGGACGCATAAAAATTGC 58.461 47.619 0.00 0.00 36.74 3.56
196 197 2.159114 CCCCCAGGACGCATAAAAATTG 60.159 50.000 0.00 0.00 33.47 2.32
197 198 2.107366 CCCCCAGGACGCATAAAAATT 58.893 47.619 0.00 0.00 33.47 1.82
198 199 1.775385 CCCCCAGGACGCATAAAAAT 58.225 50.000 0.00 0.00 33.47 1.82
199 200 3.274601 CCCCCAGGACGCATAAAAA 57.725 52.632 0.00 0.00 33.47 1.94
221 222 4.115199 ATCTCCAGCCGTTGCCCC 62.115 66.667 0.00 0.00 38.69 5.80
222 223 2.825836 CATCTCCAGCCGTTGCCC 60.826 66.667 0.00 0.00 38.69 5.36
223 224 3.512516 GCATCTCCAGCCGTTGCC 61.513 66.667 0.00 0.00 38.69 4.52
224 225 3.512516 GGCATCTCCAGCCGTTGC 61.513 66.667 0.00 0.00 43.15 4.17
230 231 1.453669 CCCTTAGGGCATCTCCAGC 59.546 63.158 3.52 0.00 35.35 4.85
260 261 1.037030 AGAGAGAGGAAGGAGCGCAG 61.037 60.000 11.47 0.00 0.00 5.18
261 262 1.000270 AGAGAGAGGAAGGAGCGCA 60.000 57.895 11.47 0.00 0.00 6.09
262 263 0.751643 AGAGAGAGAGGAAGGAGCGC 60.752 60.000 0.00 0.00 0.00 5.92
263 264 1.134098 AGAGAGAGAGAGGAAGGAGCG 60.134 57.143 0.00 0.00 0.00 5.03
264 265 2.173569 AGAGAGAGAGAGAGGAAGGAGC 59.826 54.545 0.00 0.00 0.00 4.70
265 266 3.713764 AGAGAGAGAGAGAGAGGAAGGAG 59.286 52.174 0.00 0.00 0.00 3.69
266 267 3.711704 GAGAGAGAGAGAGAGAGGAAGGA 59.288 52.174 0.00 0.00 0.00 3.36
267 268 3.713764 AGAGAGAGAGAGAGAGAGGAAGG 59.286 52.174 0.00 0.00 0.00 3.46
268 269 4.653341 AGAGAGAGAGAGAGAGAGAGGAAG 59.347 50.000 0.00 0.00 0.00 3.46
269 270 4.624913 AGAGAGAGAGAGAGAGAGAGGAA 58.375 47.826 0.00 0.00 0.00 3.36
270 271 4.078922 AGAGAGAGAGAGAGAGAGAGAGGA 60.079 50.000 0.00 0.00 0.00 3.71
271 272 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
272 273 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
273 274 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
274 275 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
275 276 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
276 277 4.501229 GCAGAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
277 278 3.386078 GCAGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
278 279 3.387374 AGCAGAGAGAGAGAGAGAGAGAG 59.613 52.174 0.00 0.00 0.00 3.20
279 280 3.378512 AGCAGAGAGAGAGAGAGAGAGA 58.621 50.000 0.00 0.00 0.00 3.10
280 281 3.834489 AGCAGAGAGAGAGAGAGAGAG 57.166 52.381 0.00 0.00 0.00 3.20
281 282 5.150715 AGATAGCAGAGAGAGAGAGAGAGA 58.849 45.833 0.00 0.00 0.00 3.10
282 283 5.245751 AGAGATAGCAGAGAGAGAGAGAGAG 59.754 48.000 0.00 0.00 0.00 3.20
283 284 5.150715 AGAGATAGCAGAGAGAGAGAGAGA 58.849 45.833 0.00 0.00 0.00 3.10
284 285 5.480642 AGAGATAGCAGAGAGAGAGAGAG 57.519 47.826 0.00 0.00 0.00 3.20
285 286 6.127619 CGATAGAGATAGCAGAGAGAGAGAGA 60.128 46.154 0.00 0.00 39.76 3.10
286 287 6.038985 CGATAGAGATAGCAGAGAGAGAGAG 58.961 48.000 0.00 0.00 39.76 3.20
287 288 5.624509 GCGATAGAGATAGCAGAGAGAGAGA 60.625 48.000 0.00 0.00 34.12 3.10
288 289 4.568359 GCGATAGAGATAGCAGAGAGAGAG 59.432 50.000 0.00 0.00 34.12 3.20
289 290 4.222810 AGCGATAGAGATAGCAGAGAGAGA 59.777 45.833 0.00 0.00 36.24 3.10
290 291 4.507710 AGCGATAGAGATAGCAGAGAGAG 58.492 47.826 0.00 0.00 36.24 3.20
291 292 4.551702 AGCGATAGAGATAGCAGAGAGA 57.448 45.455 0.00 0.00 36.24 3.10
292 293 4.201714 CGAAGCGATAGAGATAGCAGAGAG 60.202 50.000 0.00 0.00 36.24 3.20
293 294 3.682377 CGAAGCGATAGAGATAGCAGAGA 59.318 47.826 0.00 0.00 36.24 3.10
294 295 3.682377 TCGAAGCGATAGAGATAGCAGAG 59.318 47.826 0.00 0.00 36.24 3.35
295 296 3.433957 GTCGAAGCGATAGAGATAGCAGA 59.566 47.826 0.00 0.00 38.42 4.26
296 297 3.723542 CGTCGAAGCGATAGAGATAGCAG 60.724 52.174 0.00 0.00 38.42 4.24
297 298 2.157863 CGTCGAAGCGATAGAGATAGCA 59.842 50.000 0.00 0.00 38.42 3.49
298 299 2.412429 TCGTCGAAGCGATAGAGATAGC 59.588 50.000 0.00 0.00 38.42 2.97
299 300 3.480665 CGTCGTCGAAGCGATAGAGATAG 60.481 52.174 0.00 0.00 43.07 2.08
300 301 2.407696 CGTCGTCGAAGCGATAGAGATA 59.592 50.000 0.00 0.00 43.07 1.98
301 302 1.192757 CGTCGTCGAAGCGATAGAGAT 59.807 52.381 0.00 0.00 43.07 2.75
302 303 0.575859 CGTCGTCGAAGCGATAGAGA 59.424 55.000 0.00 0.00 43.07 3.10
303 304 0.383246 CCGTCGTCGAAGCGATAGAG 60.383 60.000 14.27 2.84 43.07 2.43
304 305 1.640069 CCGTCGTCGAAGCGATAGA 59.360 57.895 14.27 0.00 43.07 1.98
305 306 1.368969 CCCGTCGTCGAAGCGATAG 60.369 63.158 14.27 6.77 43.07 2.08
306 307 2.711311 CCCGTCGTCGAAGCGATA 59.289 61.111 14.27 0.00 43.07 2.92
307 308 4.849329 GCCCGTCGTCGAAGCGAT 62.849 66.667 14.27 0.00 43.07 4.58
311 312 4.409218 TTCCGCCCGTCGTCGAAG 62.409 66.667 2.98 0.00 39.71 3.79
312 313 4.409218 CTTCCGCCCGTCGTCGAA 62.409 66.667 2.98 0.00 39.71 3.71
322 323 4.547367 CATCCCGTCCCTTCCGCC 62.547 72.222 0.00 0.00 0.00 6.13
323 324 1.963464 TTACATCCCGTCCCTTCCGC 61.963 60.000 0.00 0.00 0.00 5.54
324 325 0.104304 CTTACATCCCGTCCCTTCCG 59.896 60.000 0.00 0.00 0.00 4.30
325 326 0.468648 CCTTACATCCCGTCCCTTCC 59.531 60.000 0.00 0.00 0.00 3.46
326 327 0.179054 GCCTTACATCCCGTCCCTTC 60.179 60.000 0.00 0.00 0.00 3.46
327 328 0.912487 TGCCTTACATCCCGTCCCTT 60.912 55.000 0.00 0.00 0.00 3.95
328 329 0.694444 ATGCCTTACATCCCGTCCCT 60.694 55.000 0.00 0.00 31.52 4.20
329 330 0.182775 AATGCCTTACATCCCGTCCC 59.817 55.000 0.00 0.00 38.34 4.46
330 331 1.594331 GAATGCCTTACATCCCGTCC 58.406 55.000 0.00 0.00 38.34 4.79
331 332 1.594331 GGAATGCCTTACATCCCGTC 58.406 55.000 0.00 0.00 38.34 4.79
332 333 0.182775 GGGAATGCCTTACATCCCGT 59.817 55.000 0.00 0.00 32.82 5.28
333 334 0.474184 AGGGAATGCCTTACATCCCG 59.526 55.000 4.15 0.00 44.53 5.14
334 335 2.587522 GAAGGGAATGCCTTACATCCC 58.412 52.381 5.89 1.34 42.23 3.85
335 336 2.587522 GGAAGGGAATGCCTTACATCC 58.412 52.381 11.17 2.00 38.34 3.51
336 337 2.175715 AGGGAAGGGAATGCCTTACATC 59.824 50.000 17.75 1.00 38.03 3.06
337 338 2.217776 AGGGAAGGGAATGCCTTACAT 58.782 47.619 17.75 7.70 38.03 2.29
338 339 1.681229 AGGGAAGGGAATGCCTTACA 58.319 50.000 17.75 0.00 38.03 2.41
339 340 3.046374 TCTAGGGAAGGGAATGCCTTAC 58.954 50.000 7.29 7.29 41.86 2.34
340 341 3.431411 TCTAGGGAAGGGAATGCCTTA 57.569 47.619 5.89 0.00 41.86 2.69
341 342 2.286935 TCTAGGGAAGGGAATGCCTT 57.713 50.000 5.51 5.51 41.86 4.35
342 343 2.343625 GATCTAGGGAAGGGAATGCCT 58.656 52.381 0.00 0.00 44.23 4.75
343 344 1.352687 GGATCTAGGGAAGGGAATGCC 59.647 57.143 0.00 0.00 0.00 4.40
344 345 2.039613 CTGGATCTAGGGAAGGGAATGC 59.960 54.545 0.00 0.00 0.00 3.56
345 346 3.326297 GTCTGGATCTAGGGAAGGGAATG 59.674 52.174 6.21 0.00 0.00 2.67
346 347 3.592865 GTCTGGATCTAGGGAAGGGAAT 58.407 50.000 6.21 0.00 0.00 3.01
347 348 2.690026 CGTCTGGATCTAGGGAAGGGAA 60.690 54.545 6.21 0.00 0.00 3.97
348 349 1.133450 CGTCTGGATCTAGGGAAGGGA 60.133 57.143 6.21 0.00 0.00 4.20
349 350 1.333177 CGTCTGGATCTAGGGAAGGG 58.667 60.000 6.21 0.00 0.00 3.95
350 351 1.333177 CCGTCTGGATCTAGGGAAGG 58.667 60.000 6.21 1.54 37.49 3.46
351 352 0.676736 GCCGTCTGGATCTAGGGAAG 59.323 60.000 6.21 0.00 37.49 3.46
352 353 0.032515 TGCCGTCTGGATCTAGGGAA 60.033 55.000 6.21 0.00 37.49 3.97
353 354 0.755698 GTGCCGTCTGGATCTAGGGA 60.756 60.000 6.21 0.00 37.49 4.20
354 355 1.742768 GTGCCGTCTGGATCTAGGG 59.257 63.158 6.21 1.70 37.49 3.53
355 356 1.360551 CGTGCCGTCTGGATCTAGG 59.639 63.158 6.21 0.00 37.49 3.02
356 357 1.360551 CCGTGCCGTCTGGATCTAG 59.639 63.158 0.00 0.00 37.49 2.43
357 358 2.125326 CCCGTGCCGTCTGGATCTA 61.125 63.158 0.00 0.00 37.49 1.98
358 359 3.461773 CCCGTGCCGTCTGGATCT 61.462 66.667 0.00 0.00 37.49 2.75
359 360 3.458163 TCCCGTGCCGTCTGGATC 61.458 66.667 0.00 0.00 37.49 3.36
360 361 3.771160 GTCCCGTGCCGTCTGGAT 61.771 66.667 0.00 0.00 37.49 3.41
362 363 4.082523 ATGTCCCGTGCCGTCTGG 62.083 66.667 0.00 0.00 38.77 3.86
363 364 2.509336 GATGTCCCGTGCCGTCTG 60.509 66.667 0.00 0.00 0.00 3.51
364 365 4.129737 CGATGTCCCGTGCCGTCT 62.130 66.667 0.00 0.00 0.00 4.18
368 369 4.832608 GACCCGATGTCCCGTGCC 62.833 72.222 0.00 0.00 38.09 5.01
369 370 3.385749 ATGACCCGATGTCCCGTGC 62.386 63.158 3.12 0.00 43.78 5.34
370 371 1.521457 CATGACCCGATGTCCCGTG 60.521 63.158 0.00 0.00 43.78 4.94
371 372 1.048724 ATCATGACCCGATGTCCCGT 61.049 55.000 0.00 0.00 43.78 5.28
372 373 0.601046 CATCATGACCCGATGTCCCG 60.601 60.000 0.00 0.00 43.78 5.14
373 374 0.886490 GCATCATGACCCGATGTCCC 60.886 60.000 0.00 0.00 43.78 4.46
374 375 0.179048 TGCATCATGACCCGATGTCC 60.179 55.000 0.00 0.00 43.78 4.02
375 376 1.224075 CTGCATCATGACCCGATGTC 58.776 55.000 0.00 0.00 41.91 3.06
376 377 0.816825 GCTGCATCATGACCCGATGT 60.817 55.000 0.00 0.00 41.91 3.06
377 378 1.838568 CGCTGCATCATGACCCGATG 61.839 60.000 0.00 0.00 42.62 3.84
378 379 1.596203 CGCTGCATCATGACCCGAT 60.596 57.895 0.00 0.00 0.00 4.18
379 380 2.202919 CGCTGCATCATGACCCGA 60.203 61.111 0.00 0.00 0.00 5.14
380 381 3.945434 GCGCTGCATCATGACCCG 61.945 66.667 0.00 0.00 0.00 5.28
381 382 2.825387 TGCGCTGCATCATGACCC 60.825 61.111 9.73 0.00 31.71 4.46
390 391 1.454295 ATCAATCCCATGCGCTGCA 60.454 52.632 9.73 5.73 44.86 4.41
391 392 1.007734 CATCAATCCCATGCGCTGC 60.008 57.895 9.73 0.00 0.00 5.25
392 393 1.658114 CCATCAATCCCATGCGCTG 59.342 57.895 9.73 4.25 0.00 5.18
393 394 2.198287 GCCATCAATCCCATGCGCT 61.198 57.895 9.73 0.00 0.00 5.92
394 395 2.337532 GCCATCAATCCCATGCGC 59.662 61.111 0.00 0.00 0.00 6.09
395 396 1.848932 CTCGCCATCAATCCCATGCG 61.849 60.000 0.00 0.00 0.00 4.73
396 397 1.954528 CTCGCCATCAATCCCATGC 59.045 57.895 0.00 0.00 0.00 4.06
397 398 0.820482 TGCTCGCCATCAATCCCATG 60.820 55.000 0.00 0.00 0.00 3.66
398 399 0.820891 GTGCTCGCCATCAATCCCAT 60.821 55.000 0.00 0.00 0.00 4.00
399 400 1.451927 GTGCTCGCCATCAATCCCA 60.452 57.895 0.00 0.00 0.00 4.37
400 401 1.442526 CTGTGCTCGCCATCAATCCC 61.443 60.000 0.00 0.00 0.00 3.85
401 402 1.442526 CCTGTGCTCGCCATCAATCC 61.443 60.000 0.00 0.00 0.00 3.01
402 403 2.020131 CCTGTGCTCGCCATCAATC 58.980 57.895 0.00 0.00 0.00 2.67
403 404 2.117156 GCCTGTGCTCGCCATCAAT 61.117 57.895 0.00 0.00 33.53 2.57
404 405 2.747460 GCCTGTGCTCGCCATCAA 60.747 61.111 0.00 0.00 33.53 2.57
415 416 2.855728 GAAAAGCATCGCCGCCTGTG 62.856 60.000 0.00 0.00 0.00 3.66
416 417 2.672996 AAAAGCATCGCCGCCTGT 60.673 55.556 0.00 0.00 0.00 4.00
417 418 2.100991 GAAAAGCATCGCCGCCTG 59.899 61.111 0.00 0.00 0.00 4.85
418 419 2.045926 AGAAAAGCATCGCCGCCT 60.046 55.556 0.00 0.00 0.00 5.52
419 420 2.405191 GAGAAAAGCATCGCCGCC 59.595 61.111 0.00 0.00 0.00 6.13
420 421 2.405191 GGAGAAAAGCATCGCCGC 59.595 61.111 0.00 0.00 29.43 6.53
422 423 1.019278 TGTCGGAGAAAAGCATCGCC 61.019 55.000 0.00 0.00 39.69 5.54
423 424 0.371645 CTGTCGGAGAAAAGCATCGC 59.628 55.000 0.00 0.00 39.69 4.58
424 425 1.923204 CTCTGTCGGAGAAAAGCATCG 59.077 52.381 2.09 0.00 44.45 3.84
425 426 3.238108 TCTCTGTCGGAGAAAAGCATC 57.762 47.619 9.04 0.00 46.85 3.91
436 437 2.716244 CGATCCCGTCTCTGTCGG 59.284 66.667 0.00 0.00 46.49 4.79
437 438 2.716244 CCGATCCCGTCTCTGTCG 59.284 66.667 0.00 0.00 0.00 4.35
438 439 1.448922 CTCCCGATCCCGTCTCTGTC 61.449 65.000 0.00 0.00 0.00 3.51
439 440 1.454111 CTCCCGATCCCGTCTCTGT 60.454 63.158 0.00 0.00 0.00 3.41
440 441 2.851071 GCTCCCGATCCCGTCTCTG 61.851 68.421 0.00 0.00 0.00 3.35
441 442 2.519780 GCTCCCGATCCCGTCTCT 60.520 66.667 0.00 0.00 0.00 3.10
442 443 3.967335 CGCTCCCGATCCCGTCTC 61.967 72.222 0.00 0.00 36.29 3.36
443 444 4.501285 TCGCTCCCGATCCCGTCT 62.501 66.667 0.00 0.00 38.82 4.18
444 445 3.967335 CTCGCTCCCGATCCCGTC 61.967 72.222 0.00 0.00 43.47 4.79
459 460 2.923852 ATCTCTCCCCAAGCCCCCTC 62.924 65.000 0.00 0.00 0.00 4.30
460 461 2.978674 ATCTCTCCCCAAGCCCCCT 61.979 63.158 0.00 0.00 0.00 4.79
461 462 2.368878 ATCTCTCCCCAAGCCCCC 60.369 66.667 0.00 0.00 0.00 5.40
462 463 2.761465 CCATCTCTCCCCAAGCCCC 61.761 68.421 0.00 0.00 0.00 5.80
463 464 2.761465 CCCATCTCTCCCCAAGCCC 61.761 68.421 0.00 0.00 0.00 5.19
464 465 2.761465 CCCCATCTCTCCCCAAGCC 61.761 68.421 0.00 0.00 0.00 4.35
465 466 2.761465 CCCCCATCTCTCCCCAAGC 61.761 68.421 0.00 0.00 0.00 4.01
466 467 2.761465 GCCCCCATCTCTCCCCAAG 61.761 68.421 0.00 0.00 0.00 3.61
467 468 2.696125 GCCCCCATCTCTCCCCAA 60.696 66.667 0.00 0.00 0.00 4.12
470 471 3.866582 CACGCCCCCATCTCTCCC 61.867 72.222 0.00 0.00 0.00 4.30
471 472 4.554036 GCACGCCCCCATCTCTCC 62.554 72.222 0.00 0.00 0.00 3.71
472 473 4.899239 CGCACGCCCCCATCTCTC 62.899 72.222 0.00 0.00 0.00 3.20
485 486 4.627114 CGCACACACACGTCGCAC 62.627 66.667 0.00 0.00 0.00 5.34
489 490 4.627114 CACGCGCACACACACGTC 62.627 66.667 5.73 0.00 36.45 4.34
491 492 4.918060 CACACGCGCACACACACG 62.918 66.667 5.73 0.00 0.00 4.49
492 493 4.589700 CCACACGCGCACACACAC 62.590 66.667 5.73 0.00 0.00 3.82
502 503 3.766496 AAAAACTGCCGCCACACGC 62.766 57.895 0.00 0.00 41.76 5.34
503 504 2.411290 AAAAACTGCCGCCACACG 59.589 55.556 0.00 0.00 43.15 4.49
518 519 1.323412 CCACCACCCATCGTCAAAAA 58.677 50.000 0.00 0.00 0.00 1.94
519 520 0.538516 CCCACCACCCATCGTCAAAA 60.539 55.000 0.00 0.00 0.00 2.44
520 521 1.074072 CCCACCACCCATCGTCAAA 59.926 57.895 0.00 0.00 0.00 2.69
521 522 1.836999 CTCCCACCACCCATCGTCAA 61.837 60.000 0.00 0.00 0.00 3.18
522 523 2.203862 TCCCACCACCCATCGTCA 60.204 61.111 0.00 0.00 0.00 4.35
523 524 2.584608 CTCCCACCACCCATCGTC 59.415 66.667 0.00 0.00 0.00 4.20
524 525 3.717294 GCTCCCACCACCCATCGT 61.717 66.667 0.00 0.00 0.00 3.73
525 526 3.047807 ATGCTCCCACCACCCATCG 62.048 63.158 0.00 0.00 0.00 3.84
526 527 1.454479 CATGCTCCCACCACCCATC 60.454 63.158 0.00 0.00 0.00 3.51
527 528 2.685366 CATGCTCCCACCACCCAT 59.315 61.111 0.00 0.00 0.00 4.00
528 529 4.365111 GCATGCTCCCACCACCCA 62.365 66.667 11.37 0.00 0.00 4.51
530 531 4.722700 ACGCATGCTCCCACCACC 62.723 66.667 17.13 0.00 0.00 4.61
531 532 2.672996 AACGCATGCTCCCACCAC 60.673 61.111 17.13 0.00 0.00 4.16
532 533 2.672651 CAACGCATGCTCCCACCA 60.673 61.111 17.13 0.00 0.00 4.17
533 534 3.443045 CCAACGCATGCTCCCACC 61.443 66.667 17.13 0.00 0.00 4.61
534 535 1.805428 AAACCAACGCATGCTCCCAC 61.805 55.000 17.13 0.00 0.00 4.61
535 536 1.112315 AAAACCAACGCATGCTCCCA 61.112 50.000 17.13 0.00 0.00 4.37
536 537 0.033366 AAAAACCAACGCATGCTCCC 59.967 50.000 17.13 0.00 0.00 4.30
537 538 1.139163 CAAAAACCAACGCATGCTCC 58.861 50.000 17.13 0.00 0.00 4.70
538 539 1.786579 GACAAAAACCAACGCATGCTC 59.213 47.619 17.13 0.00 0.00 4.26
539 540 1.408702 AGACAAAAACCAACGCATGCT 59.591 42.857 17.13 0.00 0.00 3.79
540 541 1.851658 AGACAAAAACCAACGCATGC 58.148 45.000 7.91 7.91 0.00 4.06
541 542 2.467305 CGAAGACAAAAACCAACGCATG 59.533 45.455 0.00 0.00 0.00 4.06
542 543 2.098443 ACGAAGACAAAAACCAACGCAT 59.902 40.909 0.00 0.00 0.00 4.73
543 544 1.469308 ACGAAGACAAAAACCAACGCA 59.531 42.857 0.00 0.00 0.00 5.24
544 545 1.843753 CACGAAGACAAAAACCAACGC 59.156 47.619 0.00 0.00 0.00 4.84
545 546 1.843753 GCACGAAGACAAAAACCAACG 59.156 47.619 0.00 0.00 0.00 4.10
546 547 1.843753 CGCACGAAGACAAAAACCAAC 59.156 47.619 0.00 0.00 0.00 3.77
547 548 1.738350 TCGCACGAAGACAAAAACCAA 59.262 42.857 0.00 0.00 0.00 3.67
548 549 1.370609 TCGCACGAAGACAAAAACCA 58.629 45.000 0.00 0.00 0.00 3.67
549 550 2.307049 CATCGCACGAAGACAAAAACC 58.693 47.619 0.00 0.00 0.00 3.27
550 551 2.032377 TCCATCGCACGAAGACAAAAAC 60.032 45.455 0.00 0.00 0.00 2.43
551 552 2.214347 TCCATCGCACGAAGACAAAAA 58.786 42.857 0.00 0.00 0.00 1.94
552 553 1.798223 CTCCATCGCACGAAGACAAAA 59.202 47.619 0.00 0.00 0.00 2.44
553 554 1.428448 CTCCATCGCACGAAGACAAA 58.572 50.000 0.00 0.00 0.00 2.83
554 555 0.389817 CCTCCATCGCACGAAGACAA 60.390 55.000 0.00 0.00 0.00 3.18
555 556 1.215382 CCTCCATCGCACGAAGACA 59.785 57.895 0.00 0.00 0.00 3.41
556 557 1.519455 CCCTCCATCGCACGAAGAC 60.519 63.158 0.00 0.00 0.00 3.01
557 558 2.721167 CCCCTCCATCGCACGAAGA 61.721 63.158 0.00 0.00 0.00 2.87
558 559 2.032860 ATCCCCTCCATCGCACGAAG 62.033 60.000 0.00 0.00 0.00 3.79
559 560 2.063979 ATCCCCTCCATCGCACGAA 61.064 57.895 0.00 0.00 0.00 3.85
560 561 2.443952 ATCCCCTCCATCGCACGA 60.444 61.111 0.00 0.00 0.00 4.35
561 562 2.280389 CATCCCCTCCATCGCACG 60.280 66.667 0.00 0.00 0.00 5.34
562 563 1.227674 GTCATCCCCTCCATCGCAC 60.228 63.158 0.00 0.00 0.00 5.34
563 564 2.796193 CGTCATCCCCTCCATCGCA 61.796 63.158 0.00 0.00 0.00 5.10
564 565 2.028125 TTCGTCATCCCCTCCATCGC 62.028 60.000 0.00 0.00 0.00 4.58
565 566 0.032678 CTTCGTCATCCCCTCCATCG 59.967 60.000 0.00 0.00 0.00 3.84
566 567 0.394565 CCTTCGTCATCCCCTCCATC 59.605 60.000 0.00 0.00 0.00 3.51
567 568 1.056700 CCCTTCGTCATCCCCTCCAT 61.057 60.000 0.00 0.00 0.00 3.41
568 569 1.689233 CCCTTCGTCATCCCCTCCA 60.689 63.158 0.00 0.00 0.00 3.86
569 570 1.382695 TCCCTTCGTCATCCCCTCC 60.383 63.158 0.00 0.00 0.00 4.30
570 571 1.403687 CCTCCCTTCGTCATCCCCTC 61.404 65.000 0.00 0.00 0.00 4.30
571 572 1.383248 CCTCCCTTCGTCATCCCCT 60.383 63.158 0.00 0.00 0.00 4.79
572 573 1.689582 ACCTCCCTTCGTCATCCCC 60.690 63.158 0.00 0.00 0.00 4.81
573 574 1.522569 CACCTCCCTTCGTCATCCC 59.477 63.158 0.00 0.00 0.00 3.85
574 575 1.522569 CCACCTCCCTTCGTCATCC 59.477 63.158 0.00 0.00 0.00 3.51
575 576 1.522569 CCCACCTCCCTTCGTCATC 59.477 63.158 0.00 0.00 0.00 2.92
576 577 1.995626 CCCCACCTCCCTTCGTCAT 60.996 63.158 0.00 0.00 0.00 3.06
577 578 2.471084 ATCCCCACCTCCCTTCGTCA 62.471 60.000 0.00 0.00 0.00 4.35
578 579 1.687297 GATCCCCACCTCCCTTCGTC 61.687 65.000 0.00 0.00 0.00 4.20
579 580 1.689582 GATCCCCACCTCCCTTCGT 60.690 63.158 0.00 0.00 0.00 3.85
580 581 2.797278 CGATCCCCACCTCCCTTCG 61.797 68.421 0.00 0.00 0.00 3.79
581 582 0.981277 TTCGATCCCCACCTCCCTTC 60.981 60.000 0.00 0.00 0.00 3.46
582 583 0.983378 CTTCGATCCCCACCTCCCTT 60.983 60.000 0.00 0.00 0.00 3.95
583 584 1.383248 CTTCGATCCCCACCTCCCT 60.383 63.158 0.00 0.00 0.00 4.20
584 585 2.444256 CCTTCGATCCCCACCTCCC 61.444 68.421 0.00 0.00 0.00 4.30
585 586 1.382695 TCCTTCGATCCCCACCTCC 60.383 63.158 0.00 0.00 0.00 4.30
586 587 1.403687 CCTCCTTCGATCCCCACCTC 61.404 65.000 0.00 0.00 0.00 3.85
587 588 1.383248 CCTCCTTCGATCCCCACCT 60.383 63.158 0.00 0.00 0.00 4.00
588 589 0.398098 TACCTCCTTCGATCCCCACC 60.398 60.000 0.00 0.00 0.00 4.61
589 590 1.041437 CTACCTCCTTCGATCCCCAC 58.959 60.000 0.00 0.00 0.00 4.61
590 591 0.931468 TCTACCTCCTTCGATCCCCA 59.069 55.000 0.00 0.00 0.00 4.96
591 592 1.687660 GTTCTACCTCCTTCGATCCCC 59.312 57.143 0.00 0.00 0.00 4.81
592 593 1.687660 GGTTCTACCTCCTTCGATCCC 59.312 57.143 0.00 0.00 34.73 3.85
593 594 2.385803 TGGTTCTACCTCCTTCGATCC 58.614 52.381 0.00 0.00 39.58 3.36
594 595 3.637229 TGATGGTTCTACCTCCTTCGATC 59.363 47.826 0.00 0.00 39.58 3.69
595 596 3.385111 GTGATGGTTCTACCTCCTTCGAT 59.615 47.826 0.00 0.00 39.58 3.59
596 597 2.758979 GTGATGGTTCTACCTCCTTCGA 59.241 50.000 0.00 0.00 39.58 3.71
597 598 2.479730 CGTGATGGTTCTACCTCCTTCG 60.480 54.545 0.00 0.00 39.58 3.79
598 599 2.758979 TCGTGATGGTTCTACCTCCTTC 59.241 50.000 0.00 0.00 39.58 3.46
599 600 2.496470 GTCGTGATGGTTCTACCTCCTT 59.504 50.000 0.00 0.00 39.58 3.36
600 601 2.100989 GTCGTGATGGTTCTACCTCCT 58.899 52.381 0.00 0.00 39.58 3.69
601 602 1.202268 CGTCGTGATGGTTCTACCTCC 60.202 57.143 0.00 0.00 39.58 4.30
602 603 1.471684 ACGTCGTGATGGTTCTACCTC 59.528 52.381 0.00 0.00 39.58 3.85
603 604 1.542492 ACGTCGTGATGGTTCTACCT 58.458 50.000 0.00 0.00 39.58 3.08
604 605 2.257034 GAACGTCGTGATGGTTCTACC 58.743 52.381 0.00 0.00 37.62 3.18
605 606 1.909532 CGAACGTCGTGATGGTTCTAC 59.090 52.381 0.00 0.00 38.27 2.59
606 607 1.805943 TCGAACGTCGTGATGGTTCTA 59.194 47.619 0.00 2.78 41.35 2.10
607 608 0.594602 TCGAACGTCGTGATGGTTCT 59.405 50.000 0.00 0.00 41.35 3.01
608 609 1.582502 GATCGAACGTCGTGATGGTTC 59.417 52.381 0.00 6.67 41.35 3.62
609 610 1.625616 GATCGAACGTCGTGATGGTT 58.374 50.000 0.00 0.00 41.35 3.67
610 611 0.179145 GGATCGAACGTCGTGATGGT 60.179 55.000 0.00 0.00 41.35 3.55
611 612 0.870307 GGGATCGAACGTCGTGATGG 60.870 60.000 0.00 0.00 41.35 3.51
612 613 0.870307 GGGGATCGAACGTCGTGATG 60.870 60.000 0.00 0.00 41.35 3.07
613 614 1.035932 AGGGGATCGAACGTCGTGAT 61.036 55.000 0.00 0.00 41.35 3.06
614 615 1.246056 AAGGGGATCGAACGTCGTGA 61.246 55.000 0.00 0.00 41.35 4.35
615 616 0.389426 AAAGGGGATCGAACGTCGTG 60.389 55.000 0.00 0.00 41.35 4.35
616 617 1.176527 TAAAGGGGATCGAACGTCGT 58.823 50.000 0.00 0.00 41.35 4.34
617 618 2.282701 TTAAAGGGGATCGAACGTCG 57.717 50.000 0.00 0.00 42.10 5.12
618 619 4.941657 ACTATTAAAGGGGATCGAACGTC 58.058 43.478 0.00 0.00 0.00 4.34
619 620 6.661304 ATACTATTAAAGGGGATCGAACGT 57.339 37.500 0.00 0.00 0.00 3.99
620 621 7.958053 AAATACTATTAAAGGGGATCGAACG 57.042 36.000 0.00 0.00 0.00 3.95
647 648 9.310449 GGTCCAAATATTCCATAGTCTCTACTA 57.690 37.037 0.00 0.00 42.35 1.82
648 649 7.235812 GGGTCCAAATATTCCATAGTCTCTACT 59.764 40.741 0.00 0.00 39.91 2.57
649 650 7.387643 GGGTCCAAATATTCCATAGTCTCTAC 58.612 42.308 0.00 0.00 0.00 2.59
650 651 6.210784 CGGGTCCAAATATTCCATAGTCTCTA 59.789 42.308 0.00 0.00 0.00 2.43
651 652 5.012148 CGGGTCCAAATATTCCATAGTCTCT 59.988 44.000 0.00 0.00 0.00 3.10
652 653 5.238583 CGGGTCCAAATATTCCATAGTCTC 58.761 45.833 0.00 0.00 0.00 3.36
653 654 4.041691 CCGGGTCCAAATATTCCATAGTCT 59.958 45.833 0.00 0.00 0.00 3.24
654 655 4.324267 CCGGGTCCAAATATTCCATAGTC 58.676 47.826 0.00 0.00 0.00 2.59
679 680 1.419387 CCCATTCAGTCATCTCCCTCC 59.581 57.143 0.00 0.00 0.00 4.30
681 682 0.842635 GCCCATTCAGTCATCTCCCT 59.157 55.000 0.00 0.00 0.00 4.20
719 721 0.179250 CACTGTGTTCGTATGCGCAC 60.179 55.000 14.90 0.00 38.14 5.34
723 725 6.344800 CGATAATAACACTGTGTTCGTATGC 58.655 40.000 27.73 16.84 40.22 3.14
725 727 5.461078 GCCGATAATAACACTGTGTTCGTAT 59.539 40.000 27.73 23.31 40.22 3.06
726 728 4.799949 GCCGATAATAACACTGTGTTCGTA 59.200 41.667 27.73 20.22 40.22 3.43
727 729 3.615496 GCCGATAATAACACTGTGTTCGT 59.385 43.478 27.73 18.88 40.22 3.85
729 731 3.000925 CGGCCGATAATAACACTGTGTTC 59.999 47.826 27.73 13.57 40.22 3.18
730 732 2.933906 CGGCCGATAATAACACTGTGTT 59.066 45.455 27.14 27.14 43.88 3.32
731 733 2.546778 CGGCCGATAATAACACTGTGT 58.453 47.619 24.07 7.80 0.00 3.72
732 734 1.260561 GCGGCCGATAATAACACTGTG 59.739 52.381 33.48 6.19 0.00 3.66
733 735 1.578583 GCGGCCGATAATAACACTGT 58.421 50.000 33.48 0.00 0.00 3.55
734 736 0.865769 GGCGGCCGATAATAACACTG 59.134 55.000 33.48 0.00 0.00 3.66
860 869 3.192422 GCTGGGGCTTTTTGTTTTGTTTT 59.808 39.130 0.00 0.00 35.22 2.43
861 870 2.752354 GCTGGGGCTTTTTGTTTTGTTT 59.248 40.909 0.00 0.00 35.22 2.83
862 871 2.290577 TGCTGGGGCTTTTTGTTTTGTT 60.291 40.909 0.00 0.00 39.59 2.83
863 872 1.280421 TGCTGGGGCTTTTTGTTTTGT 59.720 42.857 0.00 0.00 39.59 2.83
864 873 1.941975 CTGCTGGGGCTTTTTGTTTTG 59.058 47.619 0.00 0.00 39.59 2.44
865 874 1.746861 GCTGCTGGGGCTTTTTGTTTT 60.747 47.619 0.00 0.00 39.59 2.43
4412 4932 4.651962 TCCGAATGTCCAATCCTACATGTA 59.348 41.667 5.25 5.25 36.47 2.29
4414 4934 4.071961 TCCGAATGTCCAATCCTACATG 57.928 45.455 0.00 0.00 36.47 3.21
4415 4935 4.982241 ATCCGAATGTCCAATCCTACAT 57.018 40.909 0.00 0.00 37.94 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.