Multiple sequence alignment - TraesCS1A01G313100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G313100 chr1A 100.000 2288 0 0 1 2288 504841508 504839221 0.000000e+00 4226.0
1 TraesCS1A01G313100 chr4D 92.841 1732 108 9 1 1723 15240439 15238715 0.000000e+00 2497.0
2 TraesCS1A01G313100 chr4D 90.967 1738 138 13 1 1727 490089252 490087523 0.000000e+00 2322.0
3 TraesCS1A01G313100 chr7D 92.746 1737 107 7 1 1726 561525203 561523475 0.000000e+00 2492.0
4 TraesCS1A01G313100 chr7D 92.095 1733 124 9 1 1723 174131992 174133721 0.000000e+00 2429.0
5 TraesCS1A01G313100 chr7D 91.892 1739 117 13 1 1723 433075920 433077650 0.000000e+00 2409.0
6 TraesCS1A01G313100 chr7D 92.097 1683 117 10 55 1726 188556088 188554411 0.000000e+00 2357.0
7 TraesCS1A01G313100 chr7D 88.073 109 13 0 2055 2163 549271333 549271441 1.840000e-26 130.0
8 TraesCS1A01G313100 chr3D 92.554 1719 110 10 20 1727 95959212 95957501 0.000000e+00 2449.0
9 TraesCS1A01G313100 chr3D 91.691 1733 128 12 1 1723 93188037 93189763 0.000000e+00 2388.0
10 TraesCS1A01G313100 chr3D 91.304 115 9 1 2049 2163 603479547 603479434 3.040000e-34 156.0
11 TraesCS1A01G313100 chr3D 88.235 102 11 1 2058 2158 595953754 595953855 1.110000e-23 121.0
12 TraesCS1A01G313100 chr4A 91.397 1732 131 13 1 1723 629502166 629503888 0.000000e+00 2357.0
13 TraesCS1A01G313100 chr7B 82.381 210 25 8 1724 1927 486709818 486709615 3.020000e-39 172.0
14 TraesCS1A01G313100 chr3B 81.944 216 27 9 1724 1934 100228583 100228375 3.020000e-39 172.0
15 TraesCS1A01G313100 chr3B 95.294 85 4 0 1 85 782817097 782817181 3.960000e-28 135.0
16 TraesCS1A01G313100 chr5A 90.435 115 11 0 2049 2163 14219896 14220010 3.940000e-33 152.0
17 TraesCS1A01G313100 chr5A 95.588 68 3 0 1 68 651644911 651644844 2.400000e-20 110.0
18 TraesCS1A01G313100 chr5D 92.453 106 7 1 2050 2155 483559623 483559519 1.420000e-32 150.0
19 TraesCS1A01G313100 chr4B 87.903 124 14 1 2161 2283 140712639 140712762 6.590000e-31 145.0
20 TraesCS1A01G313100 chr1D 90.826 109 6 3 2058 2164 377980770 377980664 2.370000e-30 143.0
21 TraesCS1A01G313100 chr3A 91.209 91 8 0 2161 2251 658880004 658880094 8.580000e-25 124.0
22 TraesCS1A01G313100 chr3A 92.157 51 4 0 2049 2099 658879944 658879994 3.150000e-09 73.1
23 TraesCS1A01G313100 chr2B 86.957 115 6 4 2049 2163 37815369 37815264 1.110000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G313100 chr1A 504839221 504841508 2287 True 4226 4226 100.000 1 2288 1 chr1A.!!$R1 2287
1 TraesCS1A01G313100 chr4D 15238715 15240439 1724 True 2497 2497 92.841 1 1723 1 chr4D.!!$R1 1722
2 TraesCS1A01G313100 chr4D 490087523 490089252 1729 True 2322 2322 90.967 1 1727 1 chr4D.!!$R2 1726
3 TraesCS1A01G313100 chr7D 561523475 561525203 1728 True 2492 2492 92.746 1 1726 1 chr7D.!!$R2 1725
4 TraesCS1A01G313100 chr7D 174131992 174133721 1729 False 2429 2429 92.095 1 1723 1 chr7D.!!$F1 1722
5 TraesCS1A01G313100 chr7D 433075920 433077650 1730 False 2409 2409 91.892 1 1723 1 chr7D.!!$F2 1722
6 TraesCS1A01G313100 chr7D 188554411 188556088 1677 True 2357 2357 92.097 55 1726 1 chr7D.!!$R1 1671
7 TraesCS1A01G313100 chr3D 95957501 95959212 1711 True 2449 2449 92.554 20 1727 1 chr3D.!!$R1 1707
8 TraesCS1A01G313100 chr3D 93188037 93189763 1726 False 2388 2388 91.691 1 1723 1 chr3D.!!$F1 1722
9 TraesCS1A01G313100 chr4A 629502166 629503888 1722 False 2357 2357 91.397 1 1723 1 chr4A.!!$F1 1722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 593 0.121197 TGGGGAGGAGGAAGGTTGAT 59.879 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 1835 0.026544 CGAGTTCTCGACGTAGAGGC 59.973 60.0 23.09 16.47 38.71 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 79 1.301677 GGGTCGTCGTCGTAGTCCTT 61.302 60.000 1.33 0.00 38.33 3.36
143 147 3.963687 CTCGCTGGCATCTGCACCA 62.964 63.158 4.33 0.00 44.36 4.17
147 151 0.677731 GCTGGCATCTGCACCACTTA 60.678 55.000 4.33 0.00 44.36 2.24
174 178 2.444895 CTCCTTAGGCTCCCCGCT 60.445 66.667 0.00 0.00 39.13 5.52
177 181 2.367202 CCTTAGGCTCCCCGCTGAA 61.367 63.158 0.00 0.00 39.13 3.02
216 220 2.822707 ACCGTCTCCCAGTACACTAT 57.177 50.000 0.00 0.00 0.00 2.12
221 225 2.700897 GTCTCCCAGTACACTATGGCAT 59.299 50.000 4.88 4.88 35.10 4.40
226 230 0.532862 AGTACACTATGGCATGGCGC 60.533 55.000 15.27 0.00 41.28 6.53
247 251 3.041946 CTCATTAGGAGCCCAGTAGGTT 58.958 50.000 0.00 0.00 36.69 3.50
275 279 3.895232 TGCACCACTTCTTCCTCTATC 57.105 47.619 0.00 0.00 0.00 2.08
280 284 4.646945 CACCACTTCTTCCTCTATCTAGCA 59.353 45.833 0.00 0.00 0.00 3.49
310 314 4.613143 GCCTGATTCATGGCCCAT 57.387 55.556 0.00 0.00 43.11 4.00
333 337 2.408271 ATGATGTCAACTGCCATCGT 57.592 45.000 0.00 0.00 40.25 3.73
360 364 1.817099 CTGGGTCAGGAATCAGCGC 60.817 63.158 0.00 0.00 0.00 5.92
389 393 3.944015 CTCTTCTTTAGTGGCCTTCATGG 59.056 47.826 3.32 0.00 39.35 3.66
418 422 7.443575 ACTGCATTAGATTCATTCTACATGTCC 59.556 37.037 0.00 0.00 36.65 4.02
419 423 7.281841 TGCATTAGATTCATTCTACATGTCCA 58.718 34.615 0.00 0.00 36.65 4.02
469 473 4.141287 CCATGGTGTTCTTGAACTTGGTA 58.859 43.478 2.57 0.00 0.00 3.25
470 474 4.582656 CCATGGTGTTCTTGAACTTGGTAA 59.417 41.667 2.57 0.00 0.00 2.85
581 593 0.121197 TGGGGAGGAGGAAGGTTGAT 59.879 55.000 0.00 0.00 0.00 2.57
595 607 5.163457 GGAAGGTTGATAGTGAGAGAAGAGG 60.163 48.000 0.00 0.00 0.00 3.69
596 608 4.285863 AGGTTGATAGTGAGAGAAGAGGG 58.714 47.826 0.00 0.00 0.00 4.30
597 609 3.386402 GGTTGATAGTGAGAGAAGAGGGG 59.614 52.174 0.00 0.00 0.00 4.79
625 639 0.981943 GTAAGTAGTGGTGGGCAGGT 59.018 55.000 0.00 0.00 0.00 4.00
662 685 2.530701 GGGAGAGGAGAAGAGTGACAA 58.469 52.381 0.00 0.00 0.00 3.18
696 719 9.774742 GTTTTAACTACATGCTCTTCAATTAGG 57.225 33.333 0.00 0.00 0.00 2.69
757 780 1.962807 AGATCGAGGAGAGCAATGAGG 59.037 52.381 0.00 0.00 37.82 3.86
799 822 0.738389 CGTTGACAACAAGGGCAAGT 59.262 50.000 18.09 0.00 37.97 3.16
962 986 1.272147 GGATGGCCCAACTCACTTCTT 60.272 52.381 0.00 0.00 34.14 2.52
984 1008 2.380064 AGGTCATCCTTGCACCAAAA 57.620 45.000 0.00 0.00 42.12 2.44
1080 1104 4.021925 ACCGGCTGCTCCTGGAAC 62.022 66.667 0.00 0.00 34.18 3.62
1081 1105 4.020617 CCGGCTGCTCCTGGAACA 62.021 66.667 0.00 0.00 32.51 3.18
1106 1130 2.094894 CGGTGAAGCTGATGAATGACAC 59.905 50.000 0.00 0.00 0.00 3.67
1162 1186 3.133542 AGCCGTTCATCAGATCAAGATCA 59.866 43.478 12.21 0.00 40.22 2.92
1182 1206 2.157668 CAGCTACATGGTGACGTTCAAC 59.842 50.000 0.00 0.00 46.27 3.18
1231 1255 1.939934 TCATTTTCGACGATGATGGCC 59.060 47.619 16.29 0.00 0.00 5.36
1336 1360 5.615544 CGAGTCTGCTTTGAACTGTTTATGG 60.616 44.000 0.00 0.00 0.00 2.74
1354 1379 9.062524 TGTTTATGGTTATGGTTATGCATAGAC 57.937 33.333 6.50 8.23 0.00 2.59
1363 1388 6.493189 TGGTTATGCATAGACCTGTTATGA 57.507 37.500 25.34 10.99 34.52 2.15
1373 1399 7.500992 CATAGACCTGTTATGAAGTGTGGTAT 58.499 38.462 0.00 0.00 31.59 2.73
1377 1403 4.699735 CCTGTTATGAAGTGTGGTATTGCA 59.300 41.667 0.00 0.00 0.00 4.08
1509 1537 1.149627 GGTTACCACACACCAGGCA 59.850 57.895 0.00 0.00 32.74 4.75
1559 1588 3.146066 GTTTGTCCACTAACATGCAGGA 58.854 45.455 4.84 0.00 33.04 3.86
1726 1763 0.530288 GCAACCAAACACGCCCATAT 59.470 50.000 0.00 0.00 0.00 1.78
1727 1764 1.469079 GCAACCAAACACGCCCATATC 60.469 52.381 0.00 0.00 0.00 1.63
1728 1765 1.815613 CAACCAAACACGCCCATATCA 59.184 47.619 0.00 0.00 0.00 2.15
1729 1766 1.459450 ACCAAACACGCCCATATCAC 58.541 50.000 0.00 0.00 0.00 3.06
1730 1767 1.271652 ACCAAACACGCCCATATCACA 60.272 47.619 0.00 0.00 0.00 3.58
1731 1768 2.023673 CCAAACACGCCCATATCACAT 58.976 47.619 0.00 0.00 0.00 3.21
1732 1769 2.033299 CCAAACACGCCCATATCACATC 59.967 50.000 0.00 0.00 0.00 3.06
1733 1770 2.945008 CAAACACGCCCATATCACATCT 59.055 45.455 0.00 0.00 0.00 2.90
1734 1771 3.281727 AACACGCCCATATCACATCTT 57.718 42.857 0.00 0.00 0.00 2.40
1735 1772 2.838736 ACACGCCCATATCACATCTTC 58.161 47.619 0.00 0.00 0.00 2.87
1736 1773 1.794701 CACGCCCATATCACATCTTCG 59.205 52.381 0.00 0.00 0.00 3.79
1737 1774 1.270305 ACGCCCATATCACATCTTCGG 60.270 52.381 0.00 0.00 0.00 4.30
1738 1775 1.000843 CGCCCATATCACATCTTCGGA 59.999 52.381 0.00 0.00 0.00 4.55
1739 1776 2.354103 CGCCCATATCACATCTTCGGAT 60.354 50.000 0.00 0.00 34.56 4.18
1740 1777 3.265791 GCCCATATCACATCTTCGGATC 58.734 50.000 0.00 0.00 31.35 3.36
1741 1778 3.866651 CCCATATCACATCTTCGGATCC 58.133 50.000 0.00 0.00 31.35 3.36
1742 1779 3.369892 CCCATATCACATCTTCGGATCCC 60.370 52.174 6.06 0.00 31.35 3.85
1743 1780 3.517100 CCATATCACATCTTCGGATCCCT 59.483 47.826 6.06 0.00 31.35 4.20
1744 1781 4.382470 CCATATCACATCTTCGGATCCCTC 60.382 50.000 6.06 0.00 31.35 4.30
1745 1782 1.032794 TCACATCTTCGGATCCCTCG 58.967 55.000 6.06 0.00 31.35 4.63
1746 1783 0.032678 CACATCTTCGGATCCCTCGG 59.967 60.000 6.06 0.00 31.35 4.63
1747 1784 1.005630 CATCTTCGGATCCCTCGGC 60.006 63.158 6.06 0.00 31.35 5.54
1748 1785 1.457643 ATCTTCGGATCCCTCGGCA 60.458 57.895 6.06 0.00 0.00 5.69
1749 1786 0.833834 ATCTTCGGATCCCTCGGCAT 60.834 55.000 6.06 0.00 0.00 4.40
1750 1787 1.301244 CTTCGGATCCCTCGGCATG 60.301 63.158 6.06 0.00 0.00 4.06
1751 1788 2.721971 CTTCGGATCCCTCGGCATGG 62.722 65.000 6.06 0.00 0.00 3.66
1752 1789 4.996434 CGGATCCCTCGGCATGGC 62.996 72.222 9.69 9.69 0.00 4.40
1753 1790 4.650377 GGATCCCTCGGCATGGCC 62.650 72.222 14.46 0.00 46.75 5.36
1781 1818 3.144605 GACACGAAGTCCGCGTTC 58.855 61.111 4.92 0.99 41.61 3.95
1795 1832 4.329545 GTTCGGTGCTGCTCCCCA 62.330 66.667 14.57 0.00 0.00 4.96
1796 1833 3.565214 TTCGGTGCTGCTCCCCAA 61.565 61.111 14.57 5.57 0.00 4.12
1797 1834 2.905996 TTCGGTGCTGCTCCCCAAT 61.906 57.895 14.57 0.00 0.00 3.16
1798 1835 3.136123 CGGTGCTGCTCCCCAATG 61.136 66.667 14.57 0.00 0.00 2.82
1799 1836 3.455469 GGTGCTGCTCCCCAATGC 61.455 66.667 9.55 0.00 0.00 3.56
1800 1837 3.455469 GTGCTGCTCCCCAATGCC 61.455 66.667 0.00 0.00 0.00 4.40
1801 1838 3.664888 TGCTGCTCCCCAATGCCT 61.665 61.111 0.00 0.00 0.00 4.75
1802 1839 2.832201 GCTGCTCCCCAATGCCTC 60.832 66.667 0.00 0.00 0.00 4.70
1803 1840 3.004951 CTGCTCCCCAATGCCTCT 58.995 61.111 0.00 0.00 0.00 3.69
1804 1841 1.987807 GCTGCTCCCCAATGCCTCTA 61.988 60.000 0.00 0.00 0.00 2.43
1805 1842 0.179034 CTGCTCCCCAATGCCTCTAC 60.179 60.000 0.00 0.00 0.00 2.59
1806 1843 1.227674 GCTCCCCAATGCCTCTACG 60.228 63.158 0.00 0.00 0.00 3.51
1807 1844 1.972660 GCTCCCCAATGCCTCTACGT 61.973 60.000 0.00 0.00 0.00 3.57
1808 1845 0.105039 CTCCCCAATGCCTCTACGTC 59.895 60.000 0.00 0.00 0.00 4.34
1809 1846 1.227263 CCCCAATGCCTCTACGTCG 60.227 63.158 0.00 0.00 0.00 5.12
1810 1847 1.672854 CCCCAATGCCTCTACGTCGA 61.673 60.000 0.00 0.00 0.00 4.20
1811 1848 0.249073 CCCAATGCCTCTACGTCGAG 60.249 60.000 10.02 10.02 0.00 4.04
1812 1849 0.738975 CCAATGCCTCTACGTCGAGA 59.261 55.000 17.99 3.17 32.74 4.04
1813 1850 1.134367 CCAATGCCTCTACGTCGAGAA 59.866 52.381 17.99 6.76 32.74 2.87
1814 1851 2.186076 CAATGCCTCTACGTCGAGAAC 58.814 52.381 17.99 10.22 32.74 3.01
1815 1852 1.752683 ATGCCTCTACGTCGAGAACT 58.247 50.000 17.99 0.00 32.74 3.01
1816 1853 1.085091 TGCCTCTACGTCGAGAACTC 58.915 55.000 17.99 5.44 32.74 3.01
1826 1863 4.921834 GAGAACTCGGCTTCCAGG 57.078 61.111 0.00 0.00 0.00 4.45
1827 1864 2.277858 GAGAACTCGGCTTCCAGGA 58.722 57.895 0.00 0.00 0.00 3.86
1828 1865 0.827368 GAGAACTCGGCTTCCAGGAT 59.173 55.000 0.00 0.00 0.00 3.24
1829 1866 0.827368 AGAACTCGGCTTCCAGGATC 59.173 55.000 0.00 0.00 0.00 3.36
1830 1867 0.179070 GAACTCGGCTTCCAGGATCC 60.179 60.000 2.48 2.48 0.00 3.36
1831 1868 0.909610 AACTCGGCTTCCAGGATCCA 60.910 55.000 15.82 0.00 0.00 3.41
1832 1869 1.144936 CTCGGCTTCCAGGATCCAC 59.855 63.158 15.82 0.00 0.00 4.02
1833 1870 1.612146 TCGGCTTCCAGGATCCACA 60.612 57.895 15.82 0.00 0.00 4.17
1834 1871 1.153289 CGGCTTCCAGGATCCACAG 60.153 63.158 15.82 4.86 0.00 3.66
1835 1872 1.225704 GGCTTCCAGGATCCACAGG 59.774 63.158 15.82 12.85 0.00 4.00
1836 1873 1.566298 GGCTTCCAGGATCCACAGGT 61.566 60.000 15.82 0.00 0.00 4.00
1837 1874 0.393537 GCTTCCAGGATCCACAGGTG 60.394 60.000 15.82 2.39 0.00 4.00
1838 1875 1.279496 CTTCCAGGATCCACAGGTGA 58.721 55.000 15.82 5.71 0.00 4.02
1839 1876 1.209019 CTTCCAGGATCCACAGGTGAG 59.791 57.143 15.82 10.96 0.00 3.51
1840 1877 1.222936 CCAGGATCCACAGGTGAGC 59.777 63.158 15.82 0.00 0.00 4.26
1841 1878 1.556373 CCAGGATCCACAGGTGAGCA 61.556 60.000 15.82 0.00 0.00 4.26
1842 1879 0.545171 CAGGATCCACAGGTGAGCAT 59.455 55.000 15.82 0.00 0.00 3.79
1843 1880 0.835941 AGGATCCACAGGTGAGCATC 59.164 55.000 15.82 0.07 0.00 3.91
1844 1881 0.835941 GGATCCACAGGTGAGCATCT 59.164 55.000 6.95 0.00 34.92 2.90
1845 1882 1.202627 GGATCCACAGGTGAGCATCTC 60.203 57.143 6.95 0.00 34.92 2.75
1846 1883 0.463204 ATCCACAGGTGAGCATCTCG 59.537 55.000 0.00 0.00 34.92 4.04
1847 1884 0.900182 TCCACAGGTGAGCATCTCGT 60.900 55.000 0.00 0.00 34.92 4.18
1848 1885 0.459237 CCACAGGTGAGCATCTCGTC 60.459 60.000 0.00 0.00 34.92 4.20
1849 1886 0.529833 CACAGGTGAGCATCTCGTCT 59.470 55.000 0.00 0.00 34.92 4.18
1850 1887 1.067283 CACAGGTGAGCATCTCGTCTT 60.067 52.381 0.00 0.00 34.92 3.01
1851 1888 1.203523 ACAGGTGAGCATCTCGTCTTC 59.796 52.381 0.00 0.00 34.92 2.87
1852 1889 1.476085 CAGGTGAGCATCTCGTCTTCT 59.524 52.381 0.00 0.00 34.92 2.85
1853 1890 1.748493 AGGTGAGCATCTCGTCTTCTC 59.252 52.381 0.00 0.00 34.92 2.87
1854 1891 1.532921 GGTGAGCATCTCGTCTTCTCG 60.533 57.143 0.00 0.00 34.92 4.04
1855 1892 0.099613 TGAGCATCTCGTCTTCTCGC 59.900 55.000 0.00 0.00 34.92 5.03
1856 1893 0.927994 GAGCATCTCGTCTTCTCGCG 60.928 60.000 0.00 0.00 0.00 5.87
1857 1894 1.941734 GCATCTCGTCTTCTCGCGG 60.942 63.158 6.13 0.00 0.00 6.46
1858 1895 1.429825 CATCTCGTCTTCTCGCGGT 59.570 57.895 6.13 0.00 0.00 5.68
1859 1896 0.590230 CATCTCGTCTTCTCGCGGTC 60.590 60.000 6.13 0.00 0.00 4.79
1860 1897 1.025113 ATCTCGTCTTCTCGCGGTCA 61.025 55.000 6.13 0.00 0.00 4.02
1861 1898 1.512310 CTCGTCTTCTCGCGGTCAC 60.512 63.158 6.13 0.00 0.00 3.67
1862 1899 2.183858 CTCGTCTTCTCGCGGTCACA 62.184 60.000 6.13 0.00 0.00 3.58
1863 1900 1.371267 CGTCTTCTCGCGGTCACAA 60.371 57.895 6.13 0.00 0.00 3.33
1864 1901 0.937699 CGTCTTCTCGCGGTCACAAA 60.938 55.000 6.13 0.00 0.00 2.83
1865 1902 0.507358 GTCTTCTCGCGGTCACAAAC 59.493 55.000 6.13 0.00 0.00 2.93
1866 1903 0.599204 TCTTCTCGCGGTCACAAACC 60.599 55.000 6.13 0.00 45.45 3.27
1867 1904 1.566018 CTTCTCGCGGTCACAAACCC 61.566 60.000 6.13 0.00 46.27 4.11
1868 1905 2.280524 CTCGCGGTCACAAACCCA 60.281 61.111 6.13 0.00 46.27 4.51
1869 1906 2.589442 TCGCGGTCACAAACCCAC 60.589 61.111 6.13 0.00 46.27 4.61
1870 1907 2.897846 CGCGGTCACAAACCCACA 60.898 61.111 0.00 0.00 46.27 4.17
1871 1908 2.719354 GCGGTCACAAACCCACAC 59.281 61.111 0.00 0.00 46.27 3.82
1872 1909 2.115911 GCGGTCACAAACCCACACA 61.116 57.895 0.00 0.00 46.27 3.72
1873 1910 1.725066 CGGTCACAAACCCACACAC 59.275 57.895 0.00 0.00 46.27 3.82
1874 1911 1.027255 CGGTCACAAACCCACACACA 61.027 55.000 0.00 0.00 46.27 3.72
1875 1912 0.454196 GGTCACAAACCCACACACAC 59.546 55.000 0.00 0.00 42.85 3.82
1876 1913 1.459450 GTCACAAACCCACACACACT 58.541 50.000 0.00 0.00 0.00 3.55
1877 1914 2.634600 GTCACAAACCCACACACACTA 58.365 47.619 0.00 0.00 0.00 2.74
1878 1915 3.011119 GTCACAAACCCACACACACTAA 58.989 45.455 0.00 0.00 0.00 2.24
1879 1916 3.630312 GTCACAAACCCACACACACTAAT 59.370 43.478 0.00 0.00 0.00 1.73
1880 1917 4.817464 GTCACAAACCCACACACACTAATA 59.183 41.667 0.00 0.00 0.00 0.98
1881 1918 5.049680 GTCACAAACCCACACACACTAATAG 60.050 44.000 0.00 0.00 0.00 1.73
1882 1919 5.060506 CACAAACCCACACACACTAATAGA 58.939 41.667 0.00 0.00 0.00 1.98
1883 1920 5.529430 CACAAACCCACACACACTAATAGAA 59.471 40.000 0.00 0.00 0.00 2.10
1884 1921 5.529800 ACAAACCCACACACACTAATAGAAC 59.470 40.000 0.00 0.00 0.00 3.01
1885 1922 4.967084 ACCCACACACACTAATAGAACA 57.033 40.909 0.00 0.00 0.00 3.18
1886 1923 4.894784 ACCCACACACACTAATAGAACAG 58.105 43.478 0.00 0.00 0.00 3.16
1887 1924 4.591498 ACCCACACACACTAATAGAACAGA 59.409 41.667 0.00 0.00 0.00 3.41
1888 1925 5.071250 ACCCACACACACTAATAGAACAGAA 59.929 40.000 0.00 0.00 0.00 3.02
1889 1926 5.408604 CCCACACACACTAATAGAACAGAAC 59.591 44.000 0.00 0.00 0.00 3.01
1890 1927 6.223852 CCACACACACTAATAGAACAGAACT 58.776 40.000 0.00 0.00 0.00 3.01
1891 1928 6.146184 CCACACACACTAATAGAACAGAACTG 59.854 42.308 0.00 0.00 0.00 3.16
1892 1929 6.146184 CACACACACTAATAGAACAGAACTGG 59.854 42.308 6.76 0.00 34.19 4.00
1893 1930 6.183360 ACACACACTAATAGAACAGAACTGGT 60.183 38.462 6.76 0.00 34.19 4.00
1894 1931 6.706270 CACACACTAATAGAACAGAACTGGTT 59.294 38.462 6.76 0.00 34.19 3.67
1895 1932 7.870954 CACACACTAATAGAACAGAACTGGTTA 59.129 37.037 6.76 0.00 34.19 2.85
1896 1933 8.088981 ACACACTAATAGAACAGAACTGGTTAG 58.911 37.037 6.76 8.41 34.19 2.34
1897 1934 7.063544 CACACTAATAGAACAGAACTGGTTAGC 59.936 40.741 6.76 0.00 34.19 3.09
1898 1935 7.097192 CACTAATAGAACAGAACTGGTTAGCA 58.903 38.462 6.76 0.00 34.19 3.49
1899 1936 7.063544 CACTAATAGAACAGAACTGGTTAGCAC 59.936 40.741 6.76 0.00 34.19 4.40
1900 1937 2.755650 AGAACAGAACTGGTTAGCACG 58.244 47.619 6.76 0.00 34.19 5.34
1901 1938 1.194772 GAACAGAACTGGTTAGCACGC 59.805 52.381 6.76 0.00 34.19 5.34
1902 1939 0.944311 ACAGAACTGGTTAGCACGCG 60.944 55.000 3.53 3.53 34.19 6.01
1903 1940 2.027625 AGAACTGGTTAGCACGCGC 61.028 57.895 5.73 0.00 38.99 6.86
1904 1941 2.280524 AACTGGTTAGCACGCGCA 60.281 55.556 5.73 0.00 42.27 6.09
1905 1942 2.494504 GAACTGGTTAGCACGCGCAC 62.495 60.000 5.73 0.00 42.27 5.34
1906 1943 3.788766 CTGGTTAGCACGCGCACC 61.789 66.667 5.73 6.82 42.27 5.01
1909 1946 3.788766 GTTAGCACGCGCACCCTG 61.789 66.667 5.73 0.00 42.27 4.45
1931 1968 4.450122 GCGGCAGCACACATCACG 62.450 66.667 3.18 0.00 44.35 4.35
1932 1969 4.450122 CGGCAGCACACATCACGC 62.450 66.667 0.00 0.00 0.00 5.34
1933 1970 3.356267 GGCAGCACACATCACGCA 61.356 61.111 0.00 0.00 0.00 5.24
1934 1971 2.127118 GCAGCACACATCACGCAC 60.127 61.111 0.00 0.00 0.00 5.34
1935 1972 2.895682 GCAGCACACATCACGCACA 61.896 57.895 0.00 0.00 0.00 4.57
1936 1973 1.082561 CAGCACACATCACGCACAC 60.083 57.895 0.00 0.00 0.00 3.82
1937 1974 1.523484 AGCACACATCACGCACACA 60.523 52.632 0.00 0.00 0.00 3.72
1938 1975 1.369209 GCACACATCACGCACACAC 60.369 57.895 0.00 0.00 0.00 3.82
1939 1976 1.083465 CACACATCACGCACACACG 60.083 57.895 0.00 0.00 39.50 4.49
1946 1983 2.028484 ACGCACACACGTGGTAGG 59.972 61.111 21.57 8.78 46.28 3.18
1947 1984 3.411351 CGCACACACGTGGTAGGC 61.411 66.667 21.57 15.94 43.81 3.93
1948 1985 3.047877 GCACACACGTGGTAGGCC 61.048 66.667 21.57 0.00 43.81 5.19
1949 1986 2.736995 CACACACGTGGTAGGCCG 60.737 66.667 21.57 1.49 39.64 6.13
1950 1987 2.913578 ACACACGTGGTAGGCCGA 60.914 61.111 21.57 0.00 37.67 5.54
1951 1988 2.431942 CACACGTGGTAGGCCGAC 60.432 66.667 21.57 7.59 37.67 4.79
1952 1989 2.913578 ACACGTGGTAGGCCGACA 60.914 61.111 21.57 5.62 37.67 4.35
1953 1990 2.126071 CACGTGGTAGGCCGACAG 60.126 66.667 18.37 10.59 37.67 3.51
1954 1991 4.065281 ACGTGGTAGGCCGACAGC 62.065 66.667 18.37 8.48 42.60 4.40
1955 1992 4.063967 CGTGGTAGGCCGACAGCA 62.064 66.667 18.37 10.37 46.50 4.41
1956 1993 2.125512 GTGGTAGGCCGACAGCAG 60.126 66.667 18.37 0.00 46.50 4.24
1957 1994 2.283604 TGGTAGGCCGACAGCAGA 60.284 61.111 18.37 0.00 46.50 4.26
1958 1995 2.184579 GGTAGGCCGACAGCAGAC 59.815 66.667 18.37 0.00 46.50 3.51
1959 1996 2.646175 GGTAGGCCGACAGCAGACA 61.646 63.158 18.37 0.00 46.50 3.41
1960 1997 1.446272 GTAGGCCGACAGCAGACAC 60.446 63.158 11.60 0.00 46.50 3.67
1961 1998 1.906333 TAGGCCGACAGCAGACACA 60.906 57.895 0.00 0.00 46.50 3.72
1962 1999 2.154798 TAGGCCGACAGCAGACACAC 62.155 60.000 0.00 0.00 46.50 3.82
1963 2000 3.044305 GCCGACAGCAGACACACC 61.044 66.667 0.00 0.00 42.97 4.16
1964 2001 2.737180 CCGACAGCAGACACACCT 59.263 61.111 0.00 0.00 0.00 4.00
1965 2002 1.665916 CCGACAGCAGACACACCTG 60.666 63.158 0.00 0.00 37.23 4.00
1966 2003 1.665916 CGACAGCAGACACACCTGG 60.666 63.158 0.00 0.00 34.82 4.45
1967 2004 1.963338 GACAGCAGACACACCTGGC 60.963 63.158 0.00 0.00 34.82 4.85
1968 2005 3.046087 CAGCAGACACACCTGGCG 61.046 66.667 0.00 0.00 34.82 5.69
1969 2006 4.320456 AGCAGACACACCTGGCGG 62.320 66.667 0.00 0.00 34.82 6.13
1970 2007 4.314440 GCAGACACACCTGGCGGA 62.314 66.667 0.00 0.00 34.82 5.54
1971 2008 2.425592 CAGACACACCTGGCGGAA 59.574 61.111 0.00 0.00 0.00 4.30
1972 2009 1.669115 CAGACACACCTGGCGGAAG 60.669 63.158 0.00 0.00 0.00 3.46
1984 2021 3.419828 CGGAAGCAGCAACACACA 58.580 55.556 0.00 0.00 0.00 3.72
1985 2022 1.009675 CGGAAGCAGCAACACACAC 60.010 57.895 0.00 0.00 0.00 3.82
1986 2023 1.713937 CGGAAGCAGCAACACACACA 61.714 55.000 0.00 0.00 0.00 3.72
1987 2024 0.248621 GGAAGCAGCAACACACACAC 60.249 55.000 0.00 0.00 0.00 3.82
1988 2025 0.451383 GAAGCAGCAACACACACACA 59.549 50.000 0.00 0.00 0.00 3.72
1989 2026 0.887247 AAGCAGCAACACACACACAA 59.113 45.000 0.00 0.00 0.00 3.33
1990 2027 0.452987 AGCAGCAACACACACACAAG 59.547 50.000 0.00 0.00 0.00 3.16
1991 2028 1.141591 GCAGCAACACACACACAAGC 61.142 55.000 0.00 0.00 0.00 4.01
1992 2029 0.170784 CAGCAACACACACACAAGCA 59.829 50.000 0.00 0.00 0.00 3.91
1993 2030 0.171007 AGCAACACACACACAAGCAC 59.829 50.000 0.00 0.00 0.00 4.40
1994 2031 0.109365 GCAACACACACACAAGCACA 60.109 50.000 0.00 0.00 0.00 4.57
1995 2032 1.616620 CAACACACACACAAGCACAC 58.383 50.000 0.00 0.00 0.00 3.82
1996 2033 1.068679 CAACACACACACAAGCACACA 60.069 47.619 0.00 0.00 0.00 3.72
1997 2034 1.462616 ACACACACACAAGCACACAT 58.537 45.000 0.00 0.00 0.00 3.21
1998 2035 1.401552 ACACACACACAAGCACACATC 59.598 47.619 0.00 0.00 0.00 3.06
1999 2036 1.401199 CACACACACAAGCACACATCA 59.599 47.619 0.00 0.00 0.00 3.07
2000 2037 1.401552 ACACACACAAGCACACATCAC 59.598 47.619 0.00 0.00 0.00 3.06
2001 2038 0.657312 ACACACAAGCACACATCACG 59.343 50.000 0.00 0.00 0.00 4.35
2002 2039 0.657312 CACACAAGCACACATCACGT 59.343 50.000 0.00 0.00 0.00 4.49
2003 2040 1.864082 CACACAAGCACACATCACGTA 59.136 47.619 0.00 0.00 0.00 3.57
2004 2041 2.286563 CACACAAGCACACATCACGTAA 59.713 45.455 0.00 0.00 0.00 3.18
2005 2042 2.286833 ACACAAGCACACATCACGTAAC 59.713 45.455 0.00 0.00 0.00 2.50
2006 2043 2.286563 CACAAGCACACATCACGTAACA 59.713 45.455 0.00 0.00 0.00 2.41
2007 2044 3.058983 CACAAGCACACATCACGTAACAT 60.059 43.478 0.00 0.00 0.00 2.71
2008 2045 3.058983 ACAAGCACACATCACGTAACATG 60.059 43.478 0.00 0.00 0.00 3.21
2009 2046 2.766313 AGCACACATCACGTAACATGT 58.234 42.857 0.00 0.00 33.29 3.21
2010 2047 3.920446 AGCACACATCACGTAACATGTA 58.080 40.909 0.00 0.00 31.78 2.29
2011 2048 4.503910 AGCACACATCACGTAACATGTAT 58.496 39.130 0.00 0.00 31.78 2.29
2012 2049 4.329801 AGCACACATCACGTAACATGTATG 59.670 41.667 0.00 0.04 31.71 2.39
2013 2050 4.577639 CACACATCACGTAACATGTATGC 58.422 43.478 0.00 0.00 31.78 3.14
2014 2051 4.092675 CACACATCACGTAACATGTATGCA 59.907 41.667 0.00 0.00 31.78 3.96
2015 2052 4.092821 ACACATCACGTAACATGTATGCAC 59.907 41.667 0.00 0.00 31.78 4.57
2016 2053 3.305897 ACATCACGTAACATGTATGCACG 59.694 43.478 16.11 16.11 42.03 5.34
2017 2054 2.263945 TCACGTAACATGTATGCACGG 58.736 47.619 19.66 12.18 41.19 4.94
2018 2055 1.996898 CACGTAACATGTATGCACGGT 59.003 47.619 19.66 8.33 41.19 4.83
2019 2056 3.119566 TCACGTAACATGTATGCACGGTA 60.120 43.478 19.66 9.38 41.19 4.02
2020 2057 3.242016 CACGTAACATGTATGCACGGTAG 59.758 47.826 19.66 10.07 41.19 3.18
2021 2058 2.792674 CGTAACATGTATGCACGGTAGG 59.207 50.000 0.00 0.00 36.49 3.18
2022 2059 3.735820 CGTAACATGTATGCACGGTAGGT 60.736 47.826 0.00 0.00 36.49 3.08
2023 2060 3.343941 AACATGTATGCACGGTAGGTT 57.656 42.857 0.00 0.00 0.00 3.50
2024 2061 3.343941 ACATGTATGCACGGTAGGTTT 57.656 42.857 0.00 0.00 0.00 3.27
2025 2062 3.006940 ACATGTATGCACGGTAGGTTTG 58.993 45.455 0.00 0.00 0.00 2.93
2026 2063 1.444836 TGTATGCACGGTAGGTTTGC 58.555 50.000 0.00 0.00 36.76 3.68
2028 2065 4.811206 TGCACGGTAGGTTTGCAT 57.189 50.000 0.00 0.00 41.29 3.96
2029 2066 3.028916 TGCACGGTAGGTTTGCATT 57.971 47.368 0.00 0.00 41.29 3.56
2030 2067 2.186532 TGCACGGTAGGTTTGCATTA 57.813 45.000 0.00 0.00 41.29 1.90
2031 2068 2.080693 TGCACGGTAGGTTTGCATTAG 58.919 47.619 0.00 0.00 41.29 1.73
2032 2069 1.202143 GCACGGTAGGTTTGCATTAGC 60.202 52.381 0.00 0.00 42.57 3.09
2033 2070 1.062002 CACGGTAGGTTTGCATTAGCG 59.938 52.381 14.09 14.09 46.23 4.26
2034 2071 1.338389 ACGGTAGGTTTGCATTAGCGT 60.338 47.619 15.02 15.02 46.23 5.07
2035 2072 1.735571 CGGTAGGTTTGCATTAGCGTT 59.264 47.619 9.85 0.00 46.23 4.84
2036 2073 2.160813 CGGTAGGTTTGCATTAGCGTTT 59.839 45.455 9.85 0.00 46.23 3.60
2037 2074 3.726782 CGGTAGGTTTGCATTAGCGTTTC 60.727 47.826 9.85 0.00 46.23 2.78
2038 2075 3.189702 GGTAGGTTTGCATTAGCGTTTCA 59.810 43.478 0.00 0.00 46.23 2.69
2039 2076 3.282831 AGGTTTGCATTAGCGTTTCAC 57.717 42.857 0.00 0.00 46.23 3.18
2040 2077 2.884639 AGGTTTGCATTAGCGTTTCACT 59.115 40.909 0.00 0.00 46.23 3.41
2041 2078 3.317993 AGGTTTGCATTAGCGTTTCACTT 59.682 39.130 0.00 0.00 46.23 3.16
2042 2079 4.517453 AGGTTTGCATTAGCGTTTCACTTA 59.483 37.500 0.00 0.00 46.23 2.24
2043 2080 4.615541 GGTTTGCATTAGCGTTTCACTTAC 59.384 41.667 0.00 0.00 46.23 2.34
2044 2081 5.449304 GTTTGCATTAGCGTTTCACTTACT 58.551 37.500 0.00 0.00 46.23 2.24
2045 2082 6.347888 GGTTTGCATTAGCGTTTCACTTACTA 60.348 38.462 0.00 0.00 46.23 1.82
2046 2083 6.403333 TTGCATTAGCGTTTCACTTACTAG 57.597 37.500 0.00 0.00 46.23 2.57
2047 2084 5.475719 TGCATTAGCGTTTCACTTACTAGT 58.524 37.500 0.00 0.00 46.23 2.57
2059 2096 2.688958 ACTTACTAGTGATCTCGCACCC 59.311 50.000 5.39 0.00 39.59 4.61
2060 2097 1.306148 TACTAGTGATCTCGCACCCG 58.694 55.000 5.39 0.00 39.59 5.28
2061 2098 1.299468 CTAGTGATCTCGCACCCGC 60.299 63.158 0.00 0.00 39.59 6.13
2077 2114 4.200283 GCGTCGCTCTCCCAGGAG 62.200 72.222 10.68 7.43 43.21 3.69
2083 2120 3.535962 CTCTCCCAGGAGCGGCTC 61.536 72.222 21.57 21.57 41.71 4.70
2126 2163 3.839432 CGACTCCCTCCCGCCTTC 61.839 72.222 0.00 0.00 0.00 3.46
2127 2164 2.364448 GACTCCCTCCCGCCTTCT 60.364 66.667 0.00 0.00 0.00 2.85
2128 2165 2.364448 ACTCCCTCCCGCCTTCTC 60.364 66.667 0.00 0.00 0.00 2.87
2129 2166 3.157949 CTCCCTCCCGCCTTCTCC 61.158 72.222 0.00 0.00 0.00 3.71
2130 2167 3.684628 TCCCTCCCGCCTTCTCCT 61.685 66.667 0.00 0.00 0.00 3.69
2131 2168 3.157949 CCCTCCCGCCTTCTCCTC 61.158 72.222 0.00 0.00 0.00 3.71
2132 2169 3.157949 CCTCCCGCCTTCTCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
2133 2170 2.364317 CTCCCGCCTTCTCCTCCA 60.364 66.667 0.00 0.00 0.00 3.86
2134 2171 2.683933 TCCCGCCTTCTCCTCCAC 60.684 66.667 0.00 0.00 0.00 4.02
2135 2172 3.787001 CCCGCCTTCTCCTCCACC 61.787 72.222 0.00 0.00 0.00 4.61
2136 2173 2.685380 CCGCCTTCTCCTCCACCT 60.685 66.667 0.00 0.00 0.00 4.00
2137 2174 2.726351 CCGCCTTCTCCTCCACCTC 61.726 68.421 0.00 0.00 0.00 3.85
2138 2175 2.896443 GCCTTCTCCTCCACCTCG 59.104 66.667 0.00 0.00 0.00 4.63
2139 2176 2.896443 CCTTCTCCTCCACCTCGC 59.104 66.667 0.00 0.00 0.00 5.03
2140 2177 2.726351 CCTTCTCCTCCACCTCGCC 61.726 68.421 0.00 0.00 0.00 5.54
2141 2178 3.068691 TTCTCCTCCACCTCGCCG 61.069 66.667 0.00 0.00 0.00 6.46
2173 2210 2.125713 CGTGGGCTGATGCGTGTA 60.126 61.111 0.00 0.00 40.82 2.90
2174 2211 2.167219 CGTGGGCTGATGCGTGTAG 61.167 63.158 0.00 0.00 40.82 2.74
2175 2212 1.815421 GTGGGCTGATGCGTGTAGG 60.815 63.158 0.00 0.00 40.82 3.18
2176 2213 2.290287 TGGGCTGATGCGTGTAGGT 61.290 57.895 0.00 0.00 40.82 3.08
2177 2214 1.521681 GGGCTGATGCGTGTAGGTC 60.522 63.158 0.00 0.00 40.82 3.85
2178 2215 1.878522 GGCTGATGCGTGTAGGTCG 60.879 63.158 0.00 0.00 40.82 4.79
2179 2216 1.878522 GCTGATGCGTGTAGGTCGG 60.879 63.158 0.00 0.00 0.00 4.79
2180 2217 1.878522 CTGATGCGTGTAGGTCGGC 60.879 63.158 0.00 0.00 0.00 5.54
2181 2218 2.954868 GATGCGTGTAGGTCGGCG 60.955 66.667 0.00 0.00 0.00 6.46
2182 2219 4.508128 ATGCGTGTAGGTCGGCGG 62.508 66.667 7.21 0.00 0.00 6.13
2198 2235 2.443390 GGTGCGGGCCTAGGAGTA 60.443 66.667 14.75 0.00 0.00 2.59
2199 2236 2.499827 GGTGCGGGCCTAGGAGTAG 61.500 68.421 14.75 0.98 0.00 2.57
2201 2238 2.918276 GCGGGCCTAGGAGTAGGG 60.918 72.222 14.75 0.00 45.71 3.53
2205 2242 3.130227 GCCTAGGAGTAGGGCGTG 58.870 66.667 14.75 0.00 45.71 5.34
2206 2243 2.499827 GCCTAGGAGTAGGGCGTGG 61.500 68.421 14.75 0.00 45.71 4.94
2207 2244 2.499827 CCTAGGAGTAGGGCGTGGC 61.500 68.421 1.05 0.00 42.25 5.01
2224 2261 2.556286 GCCTTGTGCCTTACCTCAC 58.444 57.895 0.00 0.00 0.00 3.51
2225 2262 1.298859 GCCTTGTGCCTTACCTCACG 61.299 60.000 0.00 0.00 36.06 4.35
2226 2263 0.034896 CCTTGTGCCTTACCTCACGT 59.965 55.000 0.00 0.00 36.06 4.49
2227 2264 1.148310 CTTGTGCCTTACCTCACGTG 58.852 55.000 9.94 9.94 36.06 4.49
2228 2265 0.882927 TTGTGCCTTACCTCACGTGC 60.883 55.000 11.67 0.00 36.06 5.34
2229 2266 2.033194 GTGCCTTACCTCACGTGCC 61.033 63.158 11.67 0.00 0.00 5.01
2230 2267 2.813908 GCCTTACCTCACGTGCCG 60.814 66.667 11.67 5.35 0.00 5.69
2231 2268 2.125673 CCTTACCTCACGTGCCGG 60.126 66.667 11.67 15.88 0.00 6.13
2232 2269 2.125673 CTTACCTCACGTGCCGGG 60.126 66.667 22.27 19.40 0.00 5.73
2233 2270 3.659089 CTTACCTCACGTGCCGGGG 62.659 68.421 22.27 17.42 0.00 5.73
2247 2284 4.699522 GGGGTCGCCTTCAACGCT 62.700 66.667 0.00 0.00 0.00 5.07
2248 2285 3.423154 GGGTCGCCTTCAACGCTG 61.423 66.667 0.00 0.00 0.00 5.18
2249 2286 4.090057 GGTCGCCTTCAACGCTGC 62.090 66.667 0.00 0.00 0.00 5.25
2250 2287 3.044305 GTCGCCTTCAACGCTGCT 61.044 61.111 0.00 0.00 0.00 4.24
2251 2288 1.736645 GTCGCCTTCAACGCTGCTA 60.737 57.895 0.00 0.00 0.00 3.49
2252 2289 1.446099 TCGCCTTCAACGCTGCTAG 60.446 57.895 0.00 0.00 0.00 3.42
2253 2290 1.446099 CGCCTTCAACGCTGCTAGA 60.446 57.895 0.00 0.00 0.00 2.43
2254 2291 1.416813 CGCCTTCAACGCTGCTAGAG 61.417 60.000 0.00 0.00 0.00 2.43
2255 2292 1.086634 GCCTTCAACGCTGCTAGAGG 61.087 60.000 0.00 0.00 0.00 3.69
2256 2293 0.247736 CCTTCAACGCTGCTAGAGGT 59.752 55.000 0.00 0.00 0.00 3.85
2257 2294 1.338200 CCTTCAACGCTGCTAGAGGTT 60.338 52.381 0.00 0.00 0.00 3.50
2258 2295 1.728971 CTTCAACGCTGCTAGAGGTTG 59.271 52.381 9.99 9.99 40.73 3.77
2259 2296 0.037326 TCAACGCTGCTAGAGGTTGG 60.037 55.000 14.42 1.18 40.01 3.77
2260 2297 0.320771 CAACGCTGCTAGAGGTTGGT 60.321 55.000 8.79 0.00 36.88 3.67
2261 2298 1.067142 CAACGCTGCTAGAGGTTGGTA 60.067 52.381 8.79 0.00 36.88 3.25
2262 2299 0.818296 ACGCTGCTAGAGGTTGGTAG 59.182 55.000 0.00 0.00 0.00 3.18
2263 2300 0.528684 CGCTGCTAGAGGTTGGTAGC 60.529 60.000 0.00 0.00 41.50 3.58
2264 2301 0.827368 GCTGCTAGAGGTTGGTAGCT 59.173 55.000 0.00 0.00 41.64 3.32
2265 2302 2.032620 GCTGCTAGAGGTTGGTAGCTA 58.967 52.381 0.00 0.00 41.64 3.32
2266 2303 2.223852 GCTGCTAGAGGTTGGTAGCTAC 60.224 54.545 15.88 15.88 41.64 3.58
2267 2304 2.022195 TGCTAGAGGTTGGTAGCTACG 58.978 52.381 17.48 1.80 41.94 3.51
2268 2305 1.337387 GCTAGAGGTTGGTAGCTACGG 59.663 57.143 17.48 1.14 38.92 4.02
2269 2306 1.337387 CTAGAGGTTGGTAGCTACGGC 59.663 57.143 17.48 9.64 39.06 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 73 0.900647 CCTCGACTCCACCAAGGACT 60.901 60.000 0.00 0.00 43.07 3.85
75 79 2.433004 TCGACCTCGACTCCACCA 59.567 61.111 0.00 0.00 44.22 4.17
197 201 2.376109 CATAGTGTACTGGGAGACGGT 58.624 52.381 0.00 0.00 42.62 4.83
226 230 2.683768 ACCTACTGGGCTCCTAATGAG 58.316 52.381 0.00 0.00 39.40 2.90
247 251 3.630312 GGAAGAAGTGGTGCAAGTACAAA 59.370 43.478 0.00 0.00 0.00 2.83
310 314 2.470983 TGGCAGTTGACATCATTCGA 57.529 45.000 0.00 0.00 0.00 3.71
360 364 3.006247 GCCACTAAAGAAGAGCTGAAGG 58.994 50.000 0.00 0.00 0.00 3.46
389 393 5.528690 TGTAGAATGAATCTAATGCAGTGCC 59.471 40.000 13.72 0.00 42.24 5.01
418 422 0.169672 CGAACTTTGGCTCCATGCTG 59.830 55.000 0.00 0.00 42.39 4.41
419 423 0.036732 TCGAACTTTGGCTCCATGCT 59.963 50.000 0.00 0.00 42.39 3.79
430 434 0.468226 TGGAGGTGTGCTCGAACTTT 59.532 50.000 0.00 0.00 0.00 2.66
662 685 4.640201 AGCATGTAGTTAAAACGGCATGAT 59.360 37.500 23.70 18.88 42.62 2.45
696 719 1.605710 AGCACAACACAGAGTTCATGC 59.394 47.619 7.90 7.90 44.28 4.06
779 802 0.594796 CTTGCCCTTGTTGTCAACGC 60.595 55.000 11.03 8.51 0.00 4.84
799 822 1.306296 GCATTGGGTGAAGGGGCTA 59.694 57.895 0.00 0.00 0.00 3.93
842 865 0.969894 CTTCAGGTCTTCCTCGGTGT 59.030 55.000 0.00 0.00 43.07 4.16
915 938 1.080298 GTAGTGGCCGTAGTTGCGT 60.080 57.895 0.00 0.00 0.00 5.24
984 1008 1.075482 CATGGGGGTGCACTCAAGT 59.925 57.895 20.52 0.00 0.00 3.16
1080 1104 2.014335 TCATCAGCTTCACCGTCATG 57.986 50.000 0.00 0.00 0.00 3.07
1081 1105 2.768253 TTCATCAGCTTCACCGTCAT 57.232 45.000 0.00 0.00 0.00 3.06
1162 1186 2.413837 GTTGAACGTCACCATGTAGCT 58.586 47.619 0.00 0.00 0.00 3.32
1182 1206 2.352032 GGTGTCGGGAGTGAGGAGG 61.352 68.421 0.00 0.00 0.00 4.30
1215 1239 1.066502 TCAAGGCCATCATCGTCGAAA 60.067 47.619 5.01 0.00 0.00 3.46
1231 1255 1.261619 GCACTTGTTGACGACCTCAAG 59.738 52.381 13.76 13.76 39.69 3.02
1292 1316 2.409570 GATAGTACTTTGGGAGGCCCT 58.590 52.381 0.00 0.00 45.70 5.19
1302 1326 6.268825 TCAAAGCAGACTCGATAGTACTTT 57.731 37.500 0.00 0.00 35.56 2.66
1336 1360 8.721478 CATAACAGGTCTATGCATAACCATAAC 58.279 37.037 26.25 12.37 35.43 1.89
1354 1379 4.699735 TGCAATACCACACTTCATAACAGG 59.300 41.667 0.00 0.00 0.00 4.00
1363 1388 7.886629 ATTTCAGATATGCAATACCACACTT 57.113 32.000 0.00 0.00 0.00 3.16
1400 1427 6.155221 AGCAGAGTATAAACAGAGGATCAACA 59.845 38.462 0.00 0.00 37.82 3.33
1509 1537 4.567971 CATGGTGTTTGGTTGTATGCAAT 58.432 39.130 0.00 0.00 36.92 3.56
1559 1588 2.101249 CACACTGCCTGATGTTTGGTTT 59.899 45.455 0.00 0.00 0.00 3.27
1618 1647 1.705256 GCACCATCTGCATGTTGTTG 58.295 50.000 0.00 0.00 46.29 3.33
1663 1693 2.552155 GCATACACTTCTCCACCCAACA 60.552 50.000 0.00 0.00 0.00 3.33
1726 1763 1.032794 CGAGGGATCCGAAGATGTGA 58.967 55.000 5.45 0.00 30.90 3.58
1727 1764 0.032678 CCGAGGGATCCGAAGATGTG 59.967 60.000 5.45 0.00 30.90 3.21
1728 1765 1.749334 GCCGAGGGATCCGAAGATGT 61.749 60.000 5.45 0.00 30.90 3.06
1729 1766 1.005630 GCCGAGGGATCCGAAGATG 60.006 63.158 5.45 0.00 30.90 2.90
1730 1767 0.833834 ATGCCGAGGGATCCGAAGAT 60.834 55.000 5.45 0.00 34.57 2.40
1731 1768 1.457643 ATGCCGAGGGATCCGAAGA 60.458 57.895 5.45 0.00 0.00 2.87
1732 1769 1.301244 CATGCCGAGGGATCCGAAG 60.301 63.158 5.45 0.00 0.00 3.79
1733 1770 2.807107 CCATGCCGAGGGATCCGAA 61.807 63.158 5.45 0.00 0.00 4.30
1734 1771 3.233980 CCATGCCGAGGGATCCGA 61.234 66.667 5.45 0.00 0.00 4.55
1735 1772 4.996434 GCCATGCCGAGGGATCCG 62.996 72.222 5.45 0.00 0.00 4.18
1736 1773 4.650377 GGCCATGCCGAGGGATCC 62.650 72.222 1.92 1.92 39.62 3.36
1778 1815 3.842925 TTGGGGAGCAGCACCGAAC 62.843 63.158 2.39 0.00 46.01 3.95
1779 1816 2.905996 ATTGGGGAGCAGCACCGAA 61.906 57.895 2.39 4.53 46.01 4.30
1780 1817 3.329889 ATTGGGGAGCAGCACCGA 61.330 61.111 2.39 0.00 46.01 4.69
1781 1818 3.136123 CATTGGGGAGCAGCACCG 61.136 66.667 2.39 0.00 46.01 4.94
1782 1819 3.455469 GCATTGGGGAGCAGCACC 61.455 66.667 0.00 0.00 42.04 5.01
1783 1820 3.455469 GGCATTGGGGAGCAGCAC 61.455 66.667 0.00 0.00 0.00 4.40
1784 1821 3.650298 GAGGCATTGGGGAGCAGCA 62.650 63.158 0.00 0.00 0.00 4.41
1785 1822 1.987807 TAGAGGCATTGGGGAGCAGC 61.988 60.000 0.00 0.00 0.00 5.25
1786 1823 0.179034 GTAGAGGCATTGGGGAGCAG 60.179 60.000 0.00 0.00 0.00 4.24
1787 1824 1.915228 GTAGAGGCATTGGGGAGCA 59.085 57.895 0.00 0.00 0.00 4.26
1788 1825 1.227674 CGTAGAGGCATTGGGGAGC 60.228 63.158 0.00 0.00 0.00 4.70
1789 1826 0.105039 GACGTAGAGGCATTGGGGAG 59.895 60.000 0.00 0.00 0.00 4.30
1790 1827 1.672854 CGACGTAGAGGCATTGGGGA 61.673 60.000 0.00 0.00 0.00 4.81
1791 1828 1.227263 CGACGTAGAGGCATTGGGG 60.227 63.158 0.00 0.00 0.00 4.96
1792 1829 0.249073 CTCGACGTAGAGGCATTGGG 60.249 60.000 17.01 0.00 34.74 4.12
1793 1830 0.738975 TCTCGACGTAGAGGCATTGG 59.261 55.000 23.09 0.00 38.71 3.16
1794 1831 2.159366 AGTTCTCGACGTAGAGGCATTG 60.159 50.000 23.09 0.24 38.71 2.82
1795 1832 2.093106 AGTTCTCGACGTAGAGGCATT 58.907 47.619 23.09 6.86 38.71 3.56
1796 1833 1.671845 GAGTTCTCGACGTAGAGGCAT 59.328 52.381 23.09 10.66 38.71 4.40
1797 1834 1.085091 GAGTTCTCGACGTAGAGGCA 58.915 55.000 23.09 9.61 38.71 4.75
1798 1835 0.026544 CGAGTTCTCGACGTAGAGGC 59.973 60.000 23.09 16.47 38.71 4.70
1799 1836 0.651551 CCGAGTTCTCGACGTAGAGG 59.348 60.000 23.09 8.54 38.71 3.69
1800 1837 0.026544 GCCGAGTTCTCGACGTAGAG 59.973 60.000 18.49 18.49 39.52 2.43
1801 1838 0.390866 AGCCGAGTTCTCGACGTAGA 60.391 55.000 21.39 0.00 34.64 2.59
1802 1839 0.447011 AAGCCGAGTTCTCGACGTAG 59.553 55.000 21.39 7.29 34.64 3.51
1803 1840 0.445436 GAAGCCGAGTTCTCGACGTA 59.555 55.000 21.39 0.00 34.64 3.57
1804 1841 1.209640 GAAGCCGAGTTCTCGACGT 59.790 57.895 21.39 9.91 34.64 4.34
1805 1842 1.514443 GGAAGCCGAGTTCTCGACG 60.514 63.158 21.39 8.57 34.64 5.12
1806 1843 0.456995 CTGGAAGCCGAGTTCTCGAC 60.457 60.000 21.39 11.64 34.64 4.20
1807 1844 1.595993 CCTGGAAGCCGAGTTCTCGA 61.596 60.000 21.39 1.98 34.64 4.04
1808 1845 1.153745 CCTGGAAGCCGAGTTCTCG 60.154 63.158 14.26 14.26 0.00 4.04
1809 1846 0.827368 ATCCTGGAAGCCGAGTTCTC 59.173 55.000 0.00 0.00 0.00 2.87
1810 1847 0.827368 GATCCTGGAAGCCGAGTTCT 59.173 55.000 0.00 0.00 0.00 3.01
1811 1848 0.179070 GGATCCTGGAAGCCGAGTTC 60.179 60.000 3.84 0.00 0.00 3.01
1812 1849 0.909610 TGGATCCTGGAAGCCGAGTT 60.910 55.000 14.23 0.00 0.00 3.01
1813 1850 1.306141 TGGATCCTGGAAGCCGAGT 60.306 57.895 14.23 0.00 0.00 4.18
1814 1851 1.144936 GTGGATCCTGGAAGCCGAG 59.855 63.158 14.23 0.00 0.00 4.63
1815 1852 1.612146 TGTGGATCCTGGAAGCCGA 60.612 57.895 14.23 0.00 0.00 5.54
1816 1853 1.153289 CTGTGGATCCTGGAAGCCG 60.153 63.158 14.23 0.00 0.00 5.52
1817 1854 1.225704 CCTGTGGATCCTGGAAGCC 59.774 63.158 14.23 6.24 0.00 4.35
1818 1855 0.393537 CACCTGTGGATCCTGGAAGC 60.394 60.000 20.54 0.00 0.00 3.86
1819 1856 1.209019 CTCACCTGTGGATCCTGGAAG 59.791 57.143 20.54 14.43 0.00 3.46
1820 1857 1.279496 CTCACCTGTGGATCCTGGAA 58.721 55.000 20.54 10.42 0.00 3.53
1821 1858 1.267574 GCTCACCTGTGGATCCTGGA 61.268 60.000 20.54 0.00 0.00 3.86
1822 1859 1.222936 GCTCACCTGTGGATCCTGG 59.777 63.158 14.23 14.45 0.00 4.45
1823 1860 0.545171 ATGCTCACCTGTGGATCCTG 59.455 55.000 14.23 2.09 0.00 3.86
1824 1861 0.835941 GATGCTCACCTGTGGATCCT 59.164 55.000 14.23 0.00 32.58 3.24
1825 1862 0.835941 AGATGCTCACCTGTGGATCC 59.164 55.000 4.20 4.20 37.17 3.36
1826 1863 1.537776 CGAGATGCTCACCTGTGGATC 60.538 57.143 0.00 1.76 36.88 3.36
1827 1864 0.463204 CGAGATGCTCACCTGTGGAT 59.537 55.000 0.00 0.00 0.00 3.41
1828 1865 0.900182 ACGAGATGCTCACCTGTGGA 60.900 55.000 0.00 0.00 0.00 4.02
1829 1866 0.459237 GACGAGATGCTCACCTGTGG 60.459 60.000 0.00 0.00 0.00 4.17
1830 1867 0.529833 AGACGAGATGCTCACCTGTG 59.470 55.000 0.00 0.00 0.00 3.66
1831 1868 1.203523 GAAGACGAGATGCTCACCTGT 59.796 52.381 0.00 0.00 0.00 4.00
1832 1869 1.476085 AGAAGACGAGATGCTCACCTG 59.524 52.381 0.00 0.00 0.00 4.00
1833 1870 1.748493 GAGAAGACGAGATGCTCACCT 59.252 52.381 0.00 0.00 0.00 4.00
1834 1871 1.532921 CGAGAAGACGAGATGCTCACC 60.533 57.143 0.00 0.00 35.09 4.02
1835 1872 1.821336 CGAGAAGACGAGATGCTCAC 58.179 55.000 0.00 0.00 35.09 3.51
1836 1873 0.099613 GCGAGAAGACGAGATGCTCA 59.900 55.000 0.00 0.00 35.09 4.26
1837 1874 0.927994 CGCGAGAAGACGAGATGCTC 60.928 60.000 0.00 0.00 35.31 4.26
1838 1875 1.063327 CGCGAGAAGACGAGATGCT 59.937 57.895 0.00 0.00 35.31 3.79
1839 1876 1.941734 CCGCGAGAAGACGAGATGC 60.942 63.158 8.23 0.00 35.31 3.91
1840 1877 0.590230 GACCGCGAGAAGACGAGATG 60.590 60.000 8.23 0.00 35.31 2.90
1841 1878 1.025113 TGACCGCGAGAAGACGAGAT 61.025 55.000 8.23 0.00 35.31 2.75
1842 1879 1.670083 TGACCGCGAGAAGACGAGA 60.670 57.895 8.23 0.00 35.31 4.04
1843 1880 1.512310 GTGACCGCGAGAAGACGAG 60.512 63.158 8.23 0.00 35.09 4.18
1844 1881 1.788067 TTGTGACCGCGAGAAGACGA 61.788 55.000 8.23 0.00 35.09 4.20
1845 1882 0.937699 TTTGTGACCGCGAGAAGACG 60.938 55.000 8.23 0.00 0.00 4.18
1846 1883 0.507358 GTTTGTGACCGCGAGAAGAC 59.493 55.000 8.23 0.00 0.00 3.01
1847 1884 0.599204 GGTTTGTGACCGCGAGAAGA 60.599 55.000 8.23 0.00 39.00 2.87
1848 1885 1.860078 GGTTTGTGACCGCGAGAAG 59.140 57.895 8.23 0.00 39.00 2.85
1849 1886 4.036977 GGTTTGTGACCGCGAGAA 57.963 55.556 8.23 0.00 39.00 2.87
1857 1894 1.459450 AGTGTGTGTGGGTTTGTGAC 58.541 50.000 0.00 0.00 0.00 3.67
1858 1895 3.351794 TTAGTGTGTGTGGGTTTGTGA 57.648 42.857 0.00 0.00 0.00 3.58
1859 1896 5.060506 TCTATTAGTGTGTGTGGGTTTGTG 58.939 41.667 0.00 0.00 0.00 3.33
1860 1897 5.298989 TCTATTAGTGTGTGTGGGTTTGT 57.701 39.130 0.00 0.00 0.00 2.83
1861 1898 5.529430 TGTTCTATTAGTGTGTGTGGGTTTG 59.471 40.000 0.00 0.00 0.00 2.93
1862 1899 5.686753 TGTTCTATTAGTGTGTGTGGGTTT 58.313 37.500 0.00 0.00 0.00 3.27
1863 1900 5.071250 TCTGTTCTATTAGTGTGTGTGGGTT 59.929 40.000 0.00 0.00 0.00 4.11
1864 1901 4.591498 TCTGTTCTATTAGTGTGTGTGGGT 59.409 41.667 0.00 0.00 0.00 4.51
1865 1902 5.147330 TCTGTTCTATTAGTGTGTGTGGG 57.853 43.478 0.00 0.00 0.00 4.61
1866 1903 6.146184 CAGTTCTGTTCTATTAGTGTGTGTGG 59.854 42.308 0.00 0.00 0.00 4.17
1867 1904 6.146184 CCAGTTCTGTTCTATTAGTGTGTGTG 59.854 42.308 0.00 0.00 0.00 3.82
1868 1905 6.183360 ACCAGTTCTGTTCTATTAGTGTGTGT 60.183 38.462 0.00 0.00 0.00 3.72
1869 1906 6.223852 ACCAGTTCTGTTCTATTAGTGTGTG 58.776 40.000 0.00 0.00 0.00 3.82
1870 1907 6.420913 ACCAGTTCTGTTCTATTAGTGTGT 57.579 37.500 0.00 0.00 0.00 3.72
1871 1908 7.063544 GCTAACCAGTTCTGTTCTATTAGTGTG 59.936 40.741 0.00 0.00 0.00 3.82
1872 1909 7.097834 GCTAACCAGTTCTGTTCTATTAGTGT 58.902 38.462 0.00 0.00 0.00 3.55
1873 1910 7.063544 GTGCTAACCAGTTCTGTTCTATTAGTG 59.936 40.741 0.00 0.00 0.00 2.74
1874 1911 7.097834 GTGCTAACCAGTTCTGTTCTATTAGT 58.902 38.462 0.00 0.00 0.00 2.24
1875 1912 6.253727 CGTGCTAACCAGTTCTGTTCTATTAG 59.746 42.308 0.00 0.00 0.00 1.73
1876 1913 6.097356 CGTGCTAACCAGTTCTGTTCTATTA 58.903 40.000 0.00 0.00 0.00 0.98
1877 1914 4.929808 CGTGCTAACCAGTTCTGTTCTATT 59.070 41.667 0.00 0.00 0.00 1.73
1878 1915 4.495422 CGTGCTAACCAGTTCTGTTCTAT 58.505 43.478 0.00 0.00 0.00 1.98
1879 1916 3.859627 GCGTGCTAACCAGTTCTGTTCTA 60.860 47.826 0.00 0.00 0.00 2.10
1880 1917 2.755650 CGTGCTAACCAGTTCTGTTCT 58.244 47.619 0.00 0.00 0.00 3.01
1881 1918 1.194772 GCGTGCTAACCAGTTCTGTTC 59.805 52.381 0.00 0.00 0.00 3.18
1882 1919 1.226746 GCGTGCTAACCAGTTCTGTT 58.773 50.000 0.00 0.00 0.00 3.16
1883 1920 0.944311 CGCGTGCTAACCAGTTCTGT 60.944 55.000 0.00 0.00 0.00 3.41
1884 1921 1.781555 CGCGTGCTAACCAGTTCTG 59.218 57.895 0.00 0.00 0.00 3.02
1885 1922 2.027625 GCGCGTGCTAACCAGTTCT 61.028 57.895 15.02 0.00 38.39 3.01
1886 1923 2.314647 TGCGCGTGCTAACCAGTTC 61.315 57.895 23.16 0.00 43.34 3.01
1887 1924 2.280524 TGCGCGTGCTAACCAGTT 60.281 55.556 23.16 0.00 43.34 3.16
1888 1925 3.041940 GTGCGCGTGCTAACCAGT 61.042 61.111 23.16 0.00 43.34 4.00
1889 1926 3.788766 GGTGCGCGTGCTAACCAG 61.789 66.667 23.16 0.00 43.34 4.00
1892 1929 3.788766 CAGGGTGCGCGTGCTAAC 61.789 66.667 23.16 12.72 43.34 2.34
1911 1948 4.471726 GATGTGTGCTGCCGCTGC 62.472 66.667 14.83 14.83 36.97 5.25
1912 1949 3.051479 TGATGTGTGCTGCCGCTG 61.051 61.111 0.70 0.00 36.97 5.18
1913 1950 3.052082 GTGATGTGTGCTGCCGCT 61.052 61.111 0.70 0.00 36.97 5.52
1914 1951 4.450122 CGTGATGTGTGCTGCCGC 62.450 66.667 0.00 0.00 0.00 6.53
1915 1952 4.450122 GCGTGATGTGTGCTGCCG 62.450 66.667 0.00 0.00 0.00 5.69
1916 1953 3.356267 TGCGTGATGTGTGCTGCC 61.356 61.111 0.00 0.00 0.00 4.85
1917 1954 2.127118 GTGCGTGATGTGTGCTGC 60.127 61.111 0.00 0.00 0.00 5.25
1918 1955 1.082561 GTGTGCGTGATGTGTGCTG 60.083 57.895 0.00 0.00 0.00 4.41
1919 1956 1.523484 TGTGTGCGTGATGTGTGCT 60.523 52.632 0.00 0.00 0.00 4.40
1920 1957 1.369209 GTGTGTGCGTGATGTGTGC 60.369 57.895 0.00 0.00 0.00 4.57
1921 1958 1.083465 CGTGTGTGCGTGATGTGTG 60.083 57.895 0.00 0.00 0.00 3.82
1922 1959 1.520564 ACGTGTGTGCGTGATGTGT 60.521 52.632 0.00 0.00 43.99 3.72
1923 1960 3.318875 ACGTGTGTGCGTGATGTG 58.681 55.556 0.00 0.00 43.99 3.21
1929 1966 2.028484 CCTACCACGTGTGTGCGT 59.972 61.111 15.65 7.22 45.04 5.24
1930 1967 3.411351 GCCTACCACGTGTGTGCG 61.411 66.667 15.65 0.51 45.04 5.34
1931 1968 3.047877 GGCCTACCACGTGTGTGC 61.048 66.667 15.65 11.04 45.04 4.57
1932 1969 2.736995 CGGCCTACCACGTGTGTG 60.737 66.667 15.65 1.33 46.00 3.82
1933 1970 2.913578 TCGGCCTACCACGTGTGT 60.914 61.111 15.65 14.16 34.57 3.72
1934 1971 2.431942 GTCGGCCTACCACGTGTG 60.432 66.667 15.65 8.62 34.57 3.82
1935 1972 2.913578 TGTCGGCCTACCACGTGT 60.914 61.111 15.65 5.35 34.57 4.49
1936 1973 2.126071 CTGTCGGCCTACCACGTG 60.126 66.667 9.08 9.08 34.57 4.49
1937 1974 4.065281 GCTGTCGGCCTACCACGT 62.065 66.667 4.73 0.00 34.57 4.49
1938 1975 3.989698 CTGCTGTCGGCCTACCACG 62.990 68.421 4.73 0.00 40.92 4.94
1939 1976 2.125512 CTGCTGTCGGCCTACCAC 60.126 66.667 4.73 0.00 40.92 4.16
1940 1977 2.283604 TCTGCTGTCGGCCTACCA 60.284 61.111 4.73 0.00 40.92 3.25
1941 1978 2.184579 GTCTGCTGTCGGCCTACC 59.815 66.667 4.73 0.00 40.92 3.18
1942 1979 1.446272 GTGTCTGCTGTCGGCCTAC 60.446 63.158 0.00 0.00 40.92 3.18
1943 1980 1.906333 TGTGTCTGCTGTCGGCCTA 60.906 57.895 0.00 0.00 40.92 3.93
1944 1981 3.233980 TGTGTCTGCTGTCGGCCT 61.234 61.111 0.00 0.00 40.92 5.19
1945 1982 3.044305 GTGTGTCTGCTGTCGGCC 61.044 66.667 0.00 0.00 40.92 6.13
1946 1983 3.044305 GGTGTGTCTGCTGTCGGC 61.044 66.667 0.00 0.00 42.22 5.54
1947 1984 1.665916 CAGGTGTGTCTGCTGTCGG 60.666 63.158 0.00 0.00 0.00 4.79
1948 1985 1.665916 CCAGGTGTGTCTGCTGTCG 60.666 63.158 0.00 0.00 33.64 4.35
1949 1986 1.963338 GCCAGGTGTGTCTGCTGTC 60.963 63.158 0.00 0.00 33.64 3.51
1950 1987 2.111878 GCCAGGTGTGTCTGCTGT 59.888 61.111 0.00 0.00 33.64 4.40
1951 1988 3.046087 CGCCAGGTGTGTCTGCTG 61.046 66.667 0.00 0.00 33.64 4.41
1952 1989 4.320456 CCGCCAGGTGTGTCTGCT 62.320 66.667 0.00 0.00 33.64 4.24
1953 1990 3.825160 TTCCGCCAGGTGTGTCTGC 62.825 63.158 0.00 0.00 39.05 4.26
1954 1991 1.669115 CTTCCGCCAGGTGTGTCTG 60.669 63.158 0.00 0.00 39.05 3.51
1955 1992 2.743718 CTTCCGCCAGGTGTGTCT 59.256 61.111 0.00 0.00 39.05 3.41
1956 1993 3.050275 GCTTCCGCCAGGTGTGTC 61.050 66.667 0.00 0.00 39.05 3.67
1957 1994 3.832237 CTGCTTCCGCCAGGTGTGT 62.832 63.158 0.00 0.00 39.05 3.72
1958 1995 3.052082 CTGCTTCCGCCAGGTGTG 61.052 66.667 0.00 0.00 39.05 3.82
1961 1998 4.269523 TTGCTGCTTCCGCCAGGT 62.270 61.111 0.00 0.00 39.05 4.00
1962 1999 3.741476 GTTGCTGCTTCCGCCAGG 61.741 66.667 0.00 0.00 39.46 4.45
1963 2000 2.979676 TGTTGCTGCTTCCGCCAG 60.980 61.111 0.00 0.00 34.43 4.85
1964 2001 3.286751 GTGTTGCTGCTTCCGCCA 61.287 61.111 0.00 0.00 34.43 5.69
1965 2002 3.286751 TGTGTTGCTGCTTCCGCC 61.287 61.111 0.00 0.00 34.43 6.13
1966 2003 2.050985 GTGTGTTGCTGCTTCCGC 60.051 61.111 0.00 0.00 0.00 5.54
1967 2004 1.009675 GTGTGTGTTGCTGCTTCCG 60.010 57.895 0.00 0.00 0.00 4.30
1968 2005 0.248621 GTGTGTGTGTTGCTGCTTCC 60.249 55.000 0.00 0.00 0.00 3.46
1969 2006 0.451383 TGTGTGTGTGTTGCTGCTTC 59.549 50.000 0.00 0.00 0.00 3.86
1970 2007 0.887247 TTGTGTGTGTGTTGCTGCTT 59.113 45.000 0.00 0.00 0.00 3.91
1971 2008 0.452987 CTTGTGTGTGTGTTGCTGCT 59.547 50.000 0.00 0.00 0.00 4.24
1972 2009 1.141591 GCTTGTGTGTGTGTTGCTGC 61.142 55.000 0.00 0.00 0.00 5.25
1973 2010 0.170784 TGCTTGTGTGTGTGTTGCTG 59.829 50.000 0.00 0.00 0.00 4.41
1974 2011 0.171007 GTGCTTGTGTGTGTGTTGCT 59.829 50.000 0.00 0.00 0.00 3.91
1975 2012 0.109365 TGTGCTTGTGTGTGTGTTGC 60.109 50.000 0.00 0.00 0.00 4.17
1976 2013 1.068679 TGTGTGCTTGTGTGTGTGTTG 60.069 47.619 0.00 0.00 0.00 3.33
1977 2014 1.242989 TGTGTGCTTGTGTGTGTGTT 58.757 45.000 0.00 0.00 0.00 3.32
1978 2015 1.401552 GATGTGTGCTTGTGTGTGTGT 59.598 47.619 0.00 0.00 0.00 3.72
1979 2016 1.401199 TGATGTGTGCTTGTGTGTGTG 59.599 47.619 0.00 0.00 0.00 3.82
1980 2017 1.401552 GTGATGTGTGCTTGTGTGTGT 59.598 47.619 0.00 0.00 0.00 3.72
1981 2018 1.595246 CGTGATGTGTGCTTGTGTGTG 60.595 52.381 0.00 0.00 0.00 3.82
1982 2019 0.657312 CGTGATGTGTGCTTGTGTGT 59.343 50.000 0.00 0.00 0.00 3.72
1983 2020 0.657312 ACGTGATGTGTGCTTGTGTG 59.343 50.000 0.00 0.00 0.00 3.82
1984 2021 2.232756 TACGTGATGTGTGCTTGTGT 57.767 45.000 0.00 0.00 0.00 3.72
1985 2022 2.286563 TGTTACGTGATGTGTGCTTGTG 59.713 45.455 0.00 0.00 0.00 3.33
1986 2023 2.556257 TGTTACGTGATGTGTGCTTGT 58.444 42.857 0.00 0.00 0.00 3.16
1987 2024 3.058983 ACATGTTACGTGATGTGTGCTTG 60.059 43.478 11.89 0.00 31.47 4.01
1988 2025 3.138304 ACATGTTACGTGATGTGTGCTT 58.862 40.909 11.89 0.00 31.47 3.91
1989 2026 2.766313 ACATGTTACGTGATGTGTGCT 58.234 42.857 11.89 0.00 31.47 4.40
1990 2027 4.577639 CATACATGTTACGTGATGTGTGC 58.422 43.478 11.89 0.00 35.68 4.57
1991 2028 4.092675 TGCATACATGTTACGTGATGTGTG 59.907 41.667 20.09 20.09 41.86 3.82
1992 2029 4.092821 GTGCATACATGTTACGTGATGTGT 59.907 41.667 11.89 11.14 34.60 3.72
1993 2030 4.577639 GTGCATACATGTTACGTGATGTG 58.422 43.478 11.89 7.68 34.60 3.21
1994 2031 3.305897 CGTGCATACATGTTACGTGATGT 59.694 43.478 11.89 12.52 36.49 3.06
1995 2032 3.302415 CCGTGCATACATGTTACGTGATG 60.302 47.826 11.89 11.01 38.15 3.07
1996 2033 2.863740 CCGTGCATACATGTTACGTGAT 59.136 45.455 11.89 0.00 38.15 3.06
1997 2034 2.263945 CCGTGCATACATGTTACGTGA 58.736 47.619 11.89 0.00 38.15 4.35
1998 2035 1.996898 ACCGTGCATACATGTTACGTG 59.003 47.619 2.30 2.65 38.15 4.49
1999 2036 2.373540 ACCGTGCATACATGTTACGT 57.626 45.000 2.30 0.00 38.15 3.57
2000 2037 2.792674 CCTACCGTGCATACATGTTACG 59.207 50.000 2.30 10.32 38.90 3.18
2001 2038 3.788937 ACCTACCGTGCATACATGTTAC 58.211 45.455 2.30 0.00 0.00 2.50
2002 2039 4.475051 AACCTACCGTGCATACATGTTA 57.525 40.909 2.30 0.00 0.00 2.41
2003 2040 3.343941 AACCTACCGTGCATACATGTT 57.656 42.857 2.30 0.00 0.00 2.71
2004 2041 3.006940 CAAACCTACCGTGCATACATGT 58.993 45.455 2.69 2.69 0.00 3.21
2005 2042 2.223249 GCAAACCTACCGTGCATACATG 60.223 50.000 0.00 0.00 38.19 3.21
2006 2043 2.014128 GCAAACCTACCGTGCATACAT 58.986 47.619 0.00 0.00 38.19 2.29
2007 2044 1.270893 TGCAAACCTACCGTGCATACA 60.271 47.619 0.00 0.00 43.09 2.29
2008 2045 1.444836 TGCAAACCTACCGTGCATAC 58.555 50.000 0.00 0.00 43.09 2.39
2009 2046 3.938109 TGCAAACCTACCGTGCATA 57.062 47.368 0.00 0.00 43.09 3.14
2010 2047 4.811206 TGCAAACCTACCGTGCAT 57.189 50.000 0.00 0.00 43.09 3.96
2012 2049 1.202143 GCTAATGCAAACCTACCGTGC 60.202 52.381 0.00 0.00 39.41 5.34
2013 2050 1.062002 CGCTAATGCAAACCTACCGTG 59.938 52.381 0.00 0.00 39.64 4.94
2014 2051 1.338389 ACGCTAATGCAAACCTACCGT 60.338 47.619 0.00 0.00 39.64 4.83
2015 2052 1.365699 ACGCTAATGCAAACCTACCG 58.634 50.000 0.00 0.00 39.64 4.02
2016 2053 3.189702 TGAAACGCTAATGCAAACCTACC 59.810 43.478 0.00 0.00 39.64 3.18
2017 2054 4.083484 AGTGAAACGCTAATGCAAACCTAC 60.083 41.667 0.00 0.00 45.86 3.18
2018 2055 4.069304 AGTGAAACGCTAATGCAAACCTA 58.931 39.130 0.00 0.00 45.86 3.08
2019 2056 2.884639 AGTGAAACGCTAATGCAAACCT 59.115 40.909 0.00 0.00 45.86 3.50
2020 2057 3.282831 AGTGAAACGCTAATGCAAACC 57.717 42.857 0.00 0.00 45.86 3.27
2021 2058 5.449304 AGTAAGTGAAACGCTAATGCAAAC 58.551 37.500 0.00 0.00 45.86 2.93
2022 2059 5.682943 AGTAAGTGAAACGCTAATGCAAA 57.317 34.783 0.00 0.00 45.86 3.68
2023 2060 5.929992 ACTAGTAAGTGAAACGCTAATGCAA 59.070 36.000 0.00 0.00 45.86 4.08
2024 2061 5.475719 ACTAGTAAGTGAAACGCTAATGCA 58.524 37.500 0.00 0.00 45.86 3.96
2038 2075 2.688958 GGGTGCGAGATCACTAGTAAGT 59.311 50.000 0.00 0.00 37.16 2.24
2039 2076 2.287069 CGGGTGCGAGATCACTAGTAAG 60.287 54.545 0.00 0.00 37.16 2.34
2040 2077 1.674441 CGGGTGCGAGATCACTAGTAA 59.326 52.381 0.00 0.00 37.16 2.24
2041 2078 1.306148 CGGGTGCGAGATCACTAGTA 58.694 55.000 0.00 0.00 37.16 1.82
2042 2079 2.005960 GCGGGTGCGAGATCACTAGT 62.006 60.000 0.00 0.00 37.16 2.57
2043 2080 1.299468 GCGGGTGCGAGATCACTAG 60.299 63.158 0.00 0.00 37.16 2.57
2044 2081 2.805546 GCGGGTGCGAGATCACTA 59.194 61.111 0.00 0.00 37.16 2.74
2060 2097 4.200283 CTCCTGGGAGAGCGACGC 62.200 72.222 13.03 13.03 44.53 5.19
2066 2103 3.535962 GAGCCGCTCCTGGGAGAG 61.536 72.222 19.64 15.89 44.53 3.20
2109 2146 3.839432 GAAGGCGGGAGGGAGTCG 61.839 72.222 0.00 0.00 0.00 4.18
2110 2147 2.364448 AGAAGGCGGGAGGGAGTC 60.364 66.667 0.00 0.00 0.00 3.36
2111 2148 2.364448 GAGAAGGCGGGAGGGAGT 60.364 66.667 0.00 0.00 0.00 3.85
2112 2149 3.157949 GGAGAAGGCGGGAGGGAG 61.158 72.222 0.00 0.00 0.00 4.30
2113 2150 3.680920 GAGGAGAAGGCGGGAGGGA 62.681 68.421 0.00 0.00 0.00 4.20
2114 2151 3.157949 GAGGAGAAGGCGGGAGGG 61.158 72.222 0.00 0.00 0.00 4.30
2115 2152 3.157949 GGAGGAGAAGGCGGGAGG 61.158 72.222 0.00 0.00 0.00 4.30
2116 2153 2.364317 TGGAGGAGAAGGCGGGAG 60.364 66.667 0.00 0.00 0.00 4.30
2117 2154 2.683933 GTGGAGGAGAAGGCGGGA 60.684 66.667 0.00 0.00 0.00 5.14
2118 2155 3.787001 GGTGGAGGAGAAGGCGGG 61.787 72.222 0.00 0.00 0.00 6.13
2119 2156 2.685380 AGGTGGAGGAGAAGGCGG 60.685 66.667 0.00 0.00 0.00 6.13
2120 2157 2.896443 GAGGTGGAGGAGAAGGCG 59.104 66.667 0.00 0.00 0.00 5.52
2121 2158 2.896443 CGAGGTGGAGGAGAAGGC 59.104 66.667 0.00 0.00 0.00 4.35
2122 2159 2.726351 GGCGAGGTGGAGGAGAAGG 61.726 68.421 0.00 0.00 0.00 3.46
2123 2160 2.896443 GGCGAGGTGGAGGAGAAG 59.104 66.667 0.00 0.00 0.00 2.85
2124 2161 3.068691 CGGCGAGGTGGAGGAGAA 61.069 66.667 0.00 0.00 0.00 2.87
2155 2192 3.657448 TACACGCATCAGCCCACGG 62.657 63.158 0.00 0.00 37.52 4.94
2156 2193 2.125713 TACACGCATCAGCCCACG 60.126 61.111 0.00 0.00 37.52 4.94
2157 2194 1.815421 CCTACACGCATCAGCCCAC 60.815 63.158 0.00 0.00 37.52 4.61
2158 2195 2.238847 GACCTACACGCATCAGCCCA 62.239 60.000 0.00 0.00 37.52 5.36
2159 2196 1.521681 GACCTACACGCATCAGCCC 60.522 63.158 0.00 0.00 37.52 5.19
2160 2197 1.878522 CGACCTACACGCATCAGCC 60.879 63.158 0.00 0.00 37.52 4.85
2161 2198 1.878522 CCGACCTACACGCATCAGC 60.879 63.158 0.00 0.00 37.42 4.26
2162 2199 1.878522 GCCGACCTACACGCATCAG 60.879 63.158 0.00 0.00 0.00 2.90
2163 2200 2.183300 GCCGACCTACACGCATCA 59.817 61.111 0.00 0.00 0.00 3.07
2164 2201 2.954868 CGCCGACCTACACGCATC 60.955 66.667 0.00 0.00 0.00 3.91
2165 2202 4.508128 CCGCCGACCTACACGCAT 62.508 66.667 0.00 0.00 0.00 4.73
2181 2218 2.443390 TACTCCTAGGCCCGCACC 60.443 66.667 2.96 0.00 0.00 5.01
2182 2219 2.499827 CCTACTCCTAGGCCCGCAC 61.500 68.421 2.96 0.00 33.12 5.34
2183 2220 2.123425 CCTACTCCTAGGCCCGCA 60.123 66.667 2.96 0.00 33.12 5.69
2184 2221 2.918276 CCCTACTCCTAGGCCCGC 60.918 72.222 2.96 0.00 38.71 6.13
2185 2222 2.918276 GCCCTACTCCTAGGCCCG 60.918 72.222 2.96 0.00 38.71 6.13
2186 2223 2.918276 CGCCCTACTCCTAGGCCC 60.918 72.222 2.96 0.00 38.71 5.80
2187 2224 2.123382 ACGCCCTACTCCTAGGCC 60.123 66.667 2.96 0.00 38.71 5.19
2188 2225 2.499827 CCACGCCCTACTCCTAGGC 61.500 68.421 2.96 0.00 38.71 3.93
2189 2226 2.499827 GCCACGCCCTACTCCTAGG 61.500 68.421 0.82 0.82 39.67 3.02
2190 2227 2.499827 GGCCACGCCCTACTCCTAG 61.500 68.421 0.00 0.00 44.06 3.02
2191 2228 2.443390 GGCCACGCCCTACTCCTA 60.443 66.667 0.00 0.00 44.06 2.94
2206 2243 1.298859 CGTGAGGTAAGGCACAAGGC 61.299 60.000 0.00 0.00 43.74 4.35
2207 2244 0.034896 ACGTGAGGTAAGGCACAAGG 59.965 55.000 0.00 0.00 34.78 3.61
2208 2245 1.148310 CACGTGAGGTAAGGCACAAG 58.852 55.000 10.90 0.00 34.78 3.16
2209 2246 0.882927 GCACGTGAGGTAAGGCACAA 60.883 55.000 22.23 0.00 34.78 3.33
2210 2247 1.301401 GCACGTGAGGTAAGGCACA 60.301 57.895 22.23 0.00 34.78 4.57
2211 2248 2.033194 GGCACGTGAGGTAAGGCAC 61.033 63.158 22.23 0.00 0.00 5.01
2212 2249 2.345991 GGCACGTGAGGTAAGGCA 59.654 61.111 22.23 0.00 0.00 4.75
2230 2267 4.699522 AGCGTTGAAGGCGACCCC 62.700 66.667 4.08 0.00 33.62 4.95
2231 2268 3.423154 CAGCGTTGAAGGCGACCC 61.423 66.667 4.08 0.00 33.62 4.46
2232 2269 4.090057 GCAGCGTTGAAGGCGACC 62.090 66.667 2.38 0.00 33.62 4.79
2233 2270 1.687494 CTAGCAGCGTTGAAGGCGAC 61.687 60.000 2.38 0.91 33.62 5.19
2234 2271 1.446099 CTAGCAGCGTTGAAGGCGA 60.446 57.895 2.38 0.00 33.62 5.54
2235 2272 1.416813 CTCTAGCAGCGTTGAAGGCG 61.417 60.000 2.38 1.26 33.62 5.52
2236 2273 1.086634 CCTCTAGCAGCGTTGAAGGC 61.087 60.000 2.38 0.94 0.00 4.35
2237 2274 0.247736 ACCTCTAGCAGCGTTGAAGG 59.752 55.000 2.38 6.19 0.00 3.46
2238 2275 1.728971 CAACCTCTAGCAGCGTTGAAG 59.271 52.381 2.38 0.00 36.28 3.02
2239 2276 1.608025 CCAACCTCTAGCAGCGTTGAA 60.608 52.381 2.38 0.00 36.28 2.69
2240 2277 0.037326 CCAACCTCTAGCAGCGTTGA 60.037 55.000 2.38 0.00 36.28 3.18
2241 2278 0.320771 ACCAACCTCTAGCAGCGTTG 60.321 55.000 0.00 0.00 35.02 4.10
2242 2279 1.204941 CTACCAACCTCTAGCAGCGTT 59.795 52.381 0.00 0.00 0.00 4.84
2243 2280 0.818296 CTACCAACCTCTAGCAGCGT 59.182 55.000 0.00 0.00 0.00 5.07
2244 2281 0.528684 GCTACCAACCTCTAGCAGCG 60.529 60.000 0.00 0.00 36.22 5.18
2245 2282 0.827368 AGCTACCAACCTCTAGCAGC 59.173 55.000 0.00 0.00 38.29 5.25
2246 2283 2.033550 CGTAGCTACCAACCTCTAGCAG 59.966 54.545 18.16 0.00 38.29 4.24
2247 2284 2.022195 CGTAGCTACCAACCTCTAGCA 58.978 52.381 18.16 0.00 38.29 3.49
2248 2285 1.337387 CCGTAGCTACCAACCTCTAGC 59.663 57.143 18.16 0.00 36.40 3.42
2249 2286 1.337387 GCCGTAGCTACCAACCTCTAG 59.663 57.143 18.16 0.73 35.50 2.43
2250 2287 1.396653 GCCGTAGCTACCAACCTCTA 58.603 55.000 18.16 0.00 35.50 2.43
2251 2288 2.200052 GCCGTAGCTACCAACCTCT 58.800 57.895 18.16 0.00 35.50 3.69
2252 2289 4.829588 GCCGTAGCTACCAACCTC 57.170 61.111 18.16 0.00 35.50 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.