AutoCloner

Multiple sequence alignment - TraesCS1A01G312900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G312900	chr1A	100.000	2561	0	0	1	2561	504701571	504704131	0.000000e+00	4730.0
1	TraesCS1A01G312900	chr1D	93.539	1687	71	12	902	2561	408745085	408746760	0.000000e+00	2477.0
2	TraesCS1A01G312900	chr1D	89.804	1834	85	27	1	1793	408612187	408613959	0.000000e+00	2257.0
3	TraesCS1A01G312900	chr1D	88.889	432	34	3	479	908	408743809	408744228	1.050000e-143	520.0
4	TraesCS1A01G312900	chr1D	79.770	697	84	14	1847	2519	282178696	282179359	1.080000e-123	453.0
5	TraesCS1A01G312900	chr1D	80.984	305	40	7	92	393	199608204	199607915	2.560000e-55	226.0
6	TraesCS1A01G312900	chr1D	78.838	241	43	5	25	265	10033055	10033287	3.410000e-34	156.0
7	TraesCS1A01G312900	chr1D	85.714	84	12	0	393	476	431815585	431815668	3.510000e-14	89.8
8	TraesCS1A01G312900	chr1B	91.518	1344	69	20	479	1792	550035064	550036392	0.000000e+00	1808.0
9	TraesCS1A01G312900	chr1B	89.010	919	66	20	1317	2230	550038877	550039765	0.000000e+00	1105.0
10	TraesCS1A01G312900	chr1B	91.748	206	11	3	2357	2561	550039845	550040045	5.390000e-72	281.0
11	TraesCS1A01G312900	chr1B	76.210	248	41	15	223	465	570832771	570832537	5.790000e-22	115.0
12	TraesCS1A01G312900	chr5D	84.249	692	80	8	1852	2521	348266046	348265362	0.000000e+00	647.0
13	TraesCS1A01G312900	chr5D	78.157	966	103	34	680	1562	490982499	490981559	1.360000e-142	516.0
14	TraesCS1A01G312900	chr5D	82.590	471	53	11	1032	1474	491682629	491683098	3.090000e-104	388.0
15	TraesCS1A01G312900	chr5D	85.886	333	47	0	1232	1564	491727895	491728227	3.130000e-94	355.0
16	TraesCS1A01G312900	chr5D	77.428	731	67	42	484	1166	491727087	491727767	1.890000e-91	346.0
17	TraesCS1A01G312900	chr5D	78.218	606	64	27	607	1166	490977721	490977138	2.460000e-85	326.0
18	TraesCS1A01G312900	chr5D	84.568	162	24	1	598	759	491682214	491682374	2.640000e-35	159.0
19	TraesCS1A01G312900	chr5D	93.023	43	2	1	890	932	491682459	491682500	7.650000e-06	62.1
20	TraesCS1A01G312900	chr5A	84.348	690	72	13	1855	2521	448554965	448554289	0.000000e+00	643.0
21	TraesCS1A01G312900	chr5A	78.462	975	108	43	680	1570	613471745	613470789	6.230000e-151	544.0
22	TraesCS1A01G312900	chr5A	76.545	631	62	34	598	1166	613466060	613465454	1.510000e-67	267.0
23	TraesCS1A01G312900	chr7A	83.890	689	78	19	1858	2521	556484352	556483672	6.020000e-176	627.0
24	TraesCS1A01G312900	chr7A	83.261	693	86	10	1850	2521	544150571	544151254	6.060000e-171	610.0
25	TraesCS1A01G312900	chr7A	83.750	480	53	6	2062	2521	712250847	712251321	5.060000e-117	431.0
26	TraesCS1A01G312900	chr7A	80.000	145	13	9	335	465	96553768	96553910	2.710000e-15	93.5
27	TraesCS1A01G312900	chr5B	80.444	946	82	39	685	1564	606828942	606829850	6.020000e-176	627.0
28	TraesCS1A01G312900	chr5B	84.635	384	54	3	1189	1570	605627023	605626643	6.690000e-101	377.0
29	TraesCS1A01G312900	chr5B	78.843	605	59	33	607	1166	605609210	605608630	6.780000e-91	344.0
30	TraesCS1A01G312900	chr5B	85.241	332	48	1	1238	1569	605608497	605608167	8.780000e-90	340.0
31	TraesCS1A01G312900	chr5B	80.357	392	29	19	814	1169	605627454	605627075	1.180000e-63	254.0
32	TraesCS1A01G312900	chr3B	82.902	696	84	18	1847	2519	658461453	658460770	6.100000e-166	593.0
33	TraesCS1A01G312900	chr4A	82.302	695	82	22	1844	2508	729171282	729171965	4.780000e-157	564.0
34	TraesCS1A01G312900	chr4A	81.766	702	94	15	1846	2523	17231703	17232394	8.000000e-155	556.0
35	TraesCS1A01G312900	chr7D	82.096	687	96	18	1847	2521	611867779	611867108	1.720000e-156	562.0
36	TraesCS1A01G312900	chr7D	83.602	372	37	3	2163	2515	612329558	612329924	6.830000e-86	327.0
37	TraesCS1A01G312900	chr7D	81.679	131	9	7	335	451	607545462	607545333	7.540000e-16	95.3
38	TraesCS1A01G312900	chr7B	86.777	484	56	7	1855	2331	45178433	45177951	1.350000e-147	532.0
39	TraesCS1A01G312900	chr7B	80.050	401	55	18	1	393	184350356	184350739	9.030000e-70	274.0
40	TraesCS1A01G312900	chr7B	89.394	66	7	0	411	476	124538327	124538392	1.630000e-12	84.2
41	TraesCS1A01G312900	chr7B	76.259	139	26	4	333	465	185013461	185013598	1.640000e-07	67.6
42	TraesCS1A01G312900	chr2D	80.552	725	81	25	1847	2522	553727236	553726523	1.060000e-138	503.0
43	TraesCS1A01G312900	chr3A	82.852	519	78	10	1844	2357	720148762	720149274	3.000000e-124	455.0
44	TraesCS1A01G312900	chr3A	83.371	439	47	5	2104	2521	36226750	36226317	1.440000e-102	383.0
45	TraesCS1A01G312900	chr4B	80.140	428	64	9	58	464	652249498	652249071	1.490000e-77	300.0
46	TraesCS1A01G312900	chr4B	82.432	148	22	3	336	482	77157491	77157347	2.680000e-25	126.0
47	TraesCS1A01G312900	chr2B	76.278	489	87	15	1	461	792465539	792466026	1.530000e-57	233.0
48	TraesCS1A01G312900	chr2B	78.136	279	44	6	214	476	731214678	731214955	7.330000e-36	161.0
49	TraesCS1A01G312900	chr2A	81.928	166	27	1	231	393	63612455	63612290	1.240000e-28	137.0
50	TraesCS1A01G312900	chr2A	88.889	72	5	3	393	463	684393778	684393847	4.540000e-13	86.1
51	TraesCS1A01G312900	chr6D	82.036	167	17	3	330	483	457479964	457479798	2.070000e-26	130.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G312900	chr1A	504701571	504704131	2560	False	4730.000000	4730	100.000000	1	2561	1	chr1A.!!$F1	2560
1	TraesCS1A01G312900	chr1D	408612187	408613959	1772	False	2257.000000	2257	89.804000	1	1793	1	chr1D.!!$F3	1792
2	TraesCS1A01G312900	chr1D	408743809	408746760	2951	False	1498.500000	2477	91.214000	479	2561	2	chr1D.!!$F5	2082
3	TraesCS1A01G312900	chr1D	282178696	282179359	663	False	453.000000	453	79.770000	1847	2519	1	chr1D.!!$F2	672
4	TraesCS1A01G312900	chr1B	550035064	550040045	4981	False	1064.666667	1808	90.758667	479	2561	3	chr1B.!!$F1	2082
5	TraesCS1A01G312900	chr5D	348265362	348266046	684	True	647.000000	647	84.249000	1852	2521	1	chr5D.!!$R1	669
6	TraesCS1A01G312900	chr5D	490977138	490982499	5361	True	421.000000	516	78.187500	607	1562	2	chr5D.!!$R2	955
7	TraesCS1A01G312900	chr5D	491727087	491728227	1140	False	350.500000	355	81.657000	484	1564	2	chr5D.!!$F2	1080
8	TraesCS1A01G312900	chr5D	491682214	491683098	884	False	203.033333	388	86.727000	598	1474	3	chr5D.!!$F1	876
9	TraesCS1A01G312900	chr5A	448554289	448554965	676	True	643.000000	643	84.348000	1855	2521	1	chr5A.!!$R1	666
10	TraesCS1A01G312900	chr5A	613470789	613471745	956	True	544.000000	544	78.462000	680	1570	1	chr5A.!!$R3	890
11	TraesCS1A01G312900	chr5A	613465454	613466060	606	True	267.000000	267	76.545000	598	1166	1	chr5A.!!$R2	568
12	TraesCS1A01G312900	chr7A	556483672	556484352	680	True	627.000000	627	83.890000	1858	2521	1	chr7A.!!$R1	663
13	TraesCS1A01G312900	chr7A	544150571	544151254	683	False	610.000000	610	83.261000	1850	2521	1	chr7A.!!$F2	671
14	TraesCS1A01G312900	chr5B	606828942	606829850	908	False	627.000000	627	80.444000	685	1564	1	chr5B.!!$F1	879
15	TraesCS1A01G312900	chr5B	605608167	605609210	1043	True	342.000000	344	82.042000	607	1569	2	chr5B.!!$R1	962
16	TraesCS1A01G312900	chr5B	605626643	605627454	811	True	315.500000	377	82.496000	814	1570	2	chr5B.!!$R2	756
17	TraesCS1A01G312900	chr3B	658460770	658461453	683	True	593.000000	593	82.902000	1847	2519	1	chr3B.!!$R1	672
18	TraesCS1A01G312900	chr4A	729171282	729171965	683	False	564.000000	564	82.302000	1844	2508	1	chr4A.!!$F2	664
19	TraesCS1A01G312900	chr4A	17231703	17232394	691	False	556.000000	556	81.766000	1846	2523	1	chr4A.!!$F1	677
20	TraesCS1A01G312900	chr7D	611867108	611867779	671	True	562.000000	562	82.096000	1847	2521	1	chr7D.!!$R2	674
21	TraesCS1A01G312900	chr2D	553726523	553727236	713	True	503.000000	503	80.552000	1847	2522	1	chr2D.!!$R1	675
22	TraesCS1A01G312900	chr3A	720148762	720149274	512	False	455.000000	455	82.852000	1844	2357	1	chr3A.!!$F1	513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
753	836	0.858583	CGCATTCAACTCGTCACACA	59.141	50.0	0.0	0.0	0.0	3.72	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2446	8674	2.157738	GCCTTTCTGTGTGCTTCAGAT	58.842	47.619	6.83	0.0	40.83	2.9	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
50	51	1.676006	CCGTATCATTTGAGTTGCCCC	59.324	52.381	0.00	0.00	0.00	5.80
51	52	1.330521	CGTATCATTTGAGTTGCCCCG	59.669	52.381	0.00	0.00	0.00	5.73
52	53	1.065551	GTATCATTTGAGTTGCCCCGC	59.934	52.381	0.00	0.00	0.00	6.13
54	55	3.061848	ATTTGAGTTGCCCCGCCG	61.062	61.111	0.00	0.00	0.00	6.46
87	88	4.243008	TTTCGAGCCGCACACCCA	62.243	61.111	0.00	0.00	0.00	4.51
120	121	1.362355	CTTTTCCGCCGCCAAACTT	59.638	52.632	0.00	0.00	0.00	2.66
130	131	1.593196	CGCCAAACTTGACCTTCTCA	58.407	50.000	0.00	0.00	0.00	3.27
132	133	1.264288	GCCAAACTTGACCTTCTCACG	59.736	52.381	0.00	0.00	0.00	4.35
138	139	2.125512	GACCTTCTCACGCCGCAT	60.126	61.111	0.00	0.00	0.00	4.73
196	197	2.813474	CGATTCAGAACCGCGCCA	60.813	61.111	0.00	0.00	0.00	5.69
206	207	3.499737	CCGCGCCACTGACCATTC	61.500	66.667	0.00	0.00	0.00	2.67
276	277	4.767255	GCACCTGCTGCTACCGCT	62.767	66.667	0.00	0.00	43.33	5.52
277	278	2.046892	CACCTGCTGCTACCGCTT	60.047	61.111	0.00	0.00	36.97	4.68
278	279	2.046892	ACCTGCTGCTACCGCTTG	60.047	61.111	0.00	0.00	36.97	4.01
279	280	2.821366	CCTGCTGCTACCGCTTGG	60.821	66.667	0.00	0.00	36.97	3.61
296	297	3.695606	GTCTGCCGGTGCTCCTCA	61.696	66.667	1.90	0.23	38.71	3.86
305	306	2.283173	TGCTCCTCACGGCTCTCA	60.283	61.111	0.00	0.00	0.00	3.27
316	317	4.074526	GCTCTCAGTGCTCGGCCA	62.075	66.667	2.24	0.00	0.00	5.36
319	320	4.007644	CTCAGTGCTCGGCCACCA	62.008	66.667	2.24	0.00	36.38	4.17
524	545	2.737180	CCACGGGGAGGATCATCG	59.263	66.667	0.00	0.00	36.25	3.84
643	703	3.405831	AGGCCACGTCTTTAGTTTAACC	58.594	45.455	5.01	0.00	0.00	2.85
645	710	4.284234	AGGCCACGTCTTTAGTTTAACCTA	59.716	41.667	5.01	0.00	0.00	3.08
648	713	5.698089	GCCACGTCTTTAGTTTAACCTAACT	59.302	40.000	0.00	0.00	41.13	2.24
650	715	7.547019	GCCACGTCTTTAGTTTAACCTAACTAT	59.453	37.037	0.00	0.00	39.60	2.12
675	740	1.067565	TGAGCATCTCTTGTGACCGAC	60.068	52.381	0.00	0.00	34.92	4.79
729	807	1.241315	ACACTACATTTGGCGCCACC	61.241	55.000	32.95	0.55	39.84	4.61
753	836	0.858583	CGCATTCAACTCGTCACACA	59.141	50.000	0.00	0.00	0.00	3.72
879	1001	2.575805	TCACTGAGCTCTGTCTCTCA	57.424	50.000	22.01	3.11	37.70	3.27
992	2033	0.867753	CTAGCTTGGCTGCGTACTCG	60.868	60.000	0.00	0.00	40.10	4.18
1152	2213	1.663702	AAAGCAGTTCGTCGTCGGG	60.664	57.895	1.55	0.00	37.69	5.14
1573	2718	0.463620	GCTCTAGGCTCCCACAAGAG	59.536	60.000	5.54	5.54	37.37	2.85
1584	2729	1.204941	CCCACAAGAGGACCTTCTACG	59.795	57.143	0.00	0.00	31.42	3.51
1711	6472	2.363683	AGCTATCTTTCCTTGCAGTGC	58.636	47.619	8.58	8.58	0.00	4.40
1721	6494	1.336517	CCTTGCAGTGCATTGGTGAAG	60.337	52.381	20.50	11.15	38.76	3.02
1722	6495	1.338973	CTTGCAGTGCATTGGTGAAGT	59.661	47.619	20.50	0.00	38.76	3.01
1723	6496	1.401761	TGCAGTGCATTGGTGAAGTT	58.598	45.000	15.37	0.00	31.71	2.66
1724	6497	2.580962	TGCAGTGCATTGGTGAAGTTA	58.419	42.857	15.37	0.00	31.71	2.24
1725	6498	3.156293	TGCAGTGCATTGGTGAAGTTAT	58.844	40.909	15.37	0.00	31.71	1.89
1726	6499	4.331108	TGCAGTGCATTGGTGAAGTTATA	58.669	39.130	15.37	0.00	31.71	0.98
1727	6500	4.949238	TGCAGTGCATTGGTGAAGTTATAT	59.051	37.500	15.37	0.00	31.71	0.86
1728	6501	5.066375	TGCAGTGCATTGGTGAAGTTATATC	59.934	40.000	15.37	0.00	31.71	1.63
1729	6502	5.066375	GCAGTGCATTGGTGAAGTTATATCA	59.934	40.000	11.09	0.00	0.00	2.15
1730	6503	6.722301	CAGTGCATTGGTGAAGTTATATCAG	58.278	40.000	0.32	0.00	0.00	2.90
1731	6504	6.317140	CAGTGCATTGGTGAAGTTATATCAGT	59.683	38.462	0.32	0.00	0.00	3.41
1732	6505	6.317140	AGTGCATTGGTGAAGTTATATCAGTG	59.683	38.462	0.00	0.00	0.00	3.66
1733	6506	6.316140	GTGCATTGGTGAAGTTATATCAGTGA	59.684	38.462	0.00	0.00	0.00	3.41
1734	6507	6.883756	TGCATTGGTGAAGTTATATCAGTGAA	59.116	34.615	0.00	0.00	0.00	3.18
1954	6751	0.259065	ACCGGACCTAGCTGATCTCA	59.741	55.000	9.46	0.00	0.00	3.27
2015	6817	8.131455	ACTTATGCAATTCTAGTGTACATTCG	57.869	34.615	0.00	0.00	0.00	3.34
2268	8133	0.580578	CGATCCTGCATTGCTCTTCG	59.419	55.000	10.49	9.32	0.00	3.79
2336	8205	1.651987	CCGCTGGTGATGTAACGATT	58.348	50.000	0.00	0.00	0.00	3.34
2460	8688	1.520494	AGCACATCTGAAGCACACAG	58.480	50.000	0.00	0.00	36.80	3.66

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	2.202756	ATTCGACGGCGGAGAAGC	60.203	61.111	12.58	0.07	38.28	3.86
19	20	2.050714	GATACGGCGGCGATTCGA	60.051	61.111	38.93	16.83	0.00	3.71
68	69	2.970324	GGTGTGCGGCTCGAAACA	60.970	61.111	0.00	0.00	0.00	2.83
91	92	4.404654	GGAAAAGTGGCAGCGGCG	62.405	66.667	0.51	0.51	42.47	6.46
120	121	2.942796	ATGCGGCGTGAGAAGGTCA	61.943	57.895	9.37	0.00	0.00	4.02
186	187	4.980805	TGGTCAGTGGCGCGGTTC	62.981	66.667	8.83	0.00	0.00	3.62
196	197	1.901085	GGGAGCTCGAATGGTCAGT	59.099	57.895	7.83	0.00	36.30	3.41
262	263	3.612247	ACCAAGCGGTAGCAGCAGG	62.612	63.158	10.47	12.43	46.71	4.85
263	264	2.046892	ACCAAGCGGTAGCAGCAG	60.047	61.111	10.47	3.86	46.71	4.24
275	276	2.743928	GAGCACCGGCAGACCAAG	60.744	66.667	0.00	0.00	44.61	3.61
276	277	4.329545	GGAGCACCGGCAGACCAA	62.330	66.667	0.00	0.00	44.61	3.67
278	279	4.459089	GAGGAGCACCGGCAGACC	62.459	72.222	0.00	0.00	44.61	3.85
279	280	3.695606	TGAGGAGCACCGGCAGAC	61.696	66.667	0.00	0.00	44.61	3.51
296	297	3.753434	CCGAGCACTGAGAGCCGT	61.753	66.667	0.00	0.00	0.00	5.68
298	299	4.828925	GGCCGAGCACTGAGAGCC	62.829	72.222	0.00	0.00	0.00	4.70
305	306	4.008933	GACTGGTGGCCGAGCACT	62.009	66.667	0.00	0.00	0.00	4.40
460	465	9.170734	CAATCTCAGAACATCTCCAATAAAAGA	57.829	33.333	0.00	0.00	0.00	2.52
476	497	1.623311	TCGTCAAGGCCAATCTCAGAA	59.377	47.619	5.01	0.00	0.00	3.02
480	501	2.029838	ACATCGTCAAGGCCAATCTC	57.970	50.000	5.01	0.00	0.00	2.75
524	545	2.097466	CGGCCAGGTTCATTGATGTTAC	59.903	50.000	2.24	0.00	0.00	2.50
643	703	8.976471	CACAAGAGATGCTCATTGTATAGTTAG	58.024	37.037	0.00	0.00	33.56	2.34
645	710	7.493971	GTCACAAGAGATGCTCATTGTATAGTT	59.506	37.037	0.00	0.00	33.56	2.24
648	713	6.283694	GGTCACAAGAGATGCTCATTGTATA	58.716	40.000	0.00	0.00	33.56	1.47
650	715	4.507710	GGTCACAAGAGATGCTCATTGTA	58.492	43.478	0.00	0.00	33.56	2.41
675	740	1.944676	GAACAGAGGATACGCCGCG	60.945	63.158	12.14	12.14	41.97	6.46
729	807	2.827604	ACGAGTTGAATGCGTCAGG	58.172	52.632	0.00	0.00	37.61	3.86
879	1001	4.252073	CGCGTACTCTATATACAGGGAGT	58.748	47.826	0.00	7.34	41.22	3.85
992	2033	1.003839	TTGGACGCCATCACTGACC	60.004	57.895	0.00	0.00	31.53	4.02
1152	2213	4.366586	GGAATAAACTACCTAGCGTGTCC	58.633	47.826	0.00	0.00	0.00	4.02
1242	2381	1.681076	GGGGCTCCCGTACTTGAAA	59.319	57.895	0.00	0.00	36.85	2.69
1504	2649	4.778143	GGCCGCCGTCTCACCAAT	62.778	66.667	0.00	0.00	0.00	3.16
1573	2718	3.858247	AGCAACAATACGTAGAAGGTCC	58.142	45.455	0.08	0.00	0.00	4.46
1584	2729	5.062558	ACAACGGTTCGTATAGCAACAATAC	59.937	40.000	0.00	0.00	39.99	1.89
1762	6535	6.945435	TGAAGCCCAAATAATTTCAGTCACTA	59.055	34.615	0.00	0.00	0.00	2.74
1985	6786	9.378551	TGTACACTAGAATTGCATAAGTTTAGG	57.621	33.333	0.00	0.00	0.00	2.69
2053	7054	5.927030	TCGTGATTTGCTTGAACTTCATAC	58.073	37.500	0.00	0.00	0.00	2.39
2268	8133	5.934781	ACAAATAGGATCCTGACATTCCTC	58.065	41.667	25.28	0.00	40.37	3.71
2336	8205	3.051940	AGAGGGATATGCCTGAGAACA	57.948	47.619	22.03	0.00	36.66	3.18
2429	8657	4.695396	TCAGATGTGCTTTGCAATTGTTT	58.305	34.783	7.40	0.00	41.47	2.83
2430	8658	4.325028	TCAGATGTGCTTTGCAATTGTT	57.675	36.364	7.40	0.00	41.47	2.83
2446	8674	2.157738	GCCTTTCTGTGTGCTTCAGAT	58.842	47.619	6.83	0.00	40.83	2.90
2460	8688	3.625649	AAGATGTGGAGAGAGCCTTTC	57.374	47.619	0.00	0.00	0.00	2.62

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.