Multiple sequence alignment - TraesCS1A01G312100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G312100 chr1A 100.000 1410 0 0 886 2295 504202315 504203724 0.000000e+00 2604.0
1 TraesCS1A01G312100 chr1A 97.587 746 18 0 923 1668 11025957 11025212 0.000000e+00 1279.0
2 TraesCS1A01G312100 chr1A 95.833 528 22 0 1768 2295 380401155 380401682 0.000000e+00 854.0
3 TraesCS1A01G312100 chr1A 90.476 525 35 10 886 1403 531839962 531839446 0.000000e+00 678.0
4 TraesCS1A01G312100 chr1A 100.000 322 0 0 1 322 504201430 504201751 1.520000e-166 595.0
5 TraesCS1A01G312100 chr1A 96.181 288 10 1 1 288 11026929 11026643 9.600000e-129 470.0
6 TraesCS1A01G312100 chr1A 94.595 259 12 2 1145 1403 504203204 504203460 1.280000e-107 399.0
7 TraesCS1A01G312100 chr1A 98.333 60 1 0 263 322 11026649 11026590 3.120000e-19 106.0
8 TraesCS1A01G312100 chr7D 85.528 919 70 37 886 1769 596674572 596675462 0.000000e+00 902.0
9 TraesCS1A01G312100 chr7D 84.429 578 53 16 1182 1730 191116164 191116733 3.360000e-148 534.0
10 TraesCS1A01G312100 chr2A 97.159 528 15 0 1768 2295 23796526 23797053 0.000000e+00 893.0
11 TraesCS1A01G312100 chr2A 97.159 528 14 1 1768 2295 600113091 600112565 0.000000e+00 891.0
12 TraesCS1A01G312100 chr2A 96.591 528 17 1 1768 2295 571019476 571020002 0.000000e+00 874.0
13 TraesCS1A01G312100 chr2A 91.013 523 37 8 886 1403 600113345 600112828 0.000000e+00 697.0
14 TraesCS1A01G312100 chr2A 90.979 521 38 7 886 1402 23796273 23796788 0.000000e+00 693.0
15 TraesCS1A01G312100 chr2A 90.840 524 36 9 886 1403 571019222 571019739 0.000000e+00 691.0
16 TraesCS1A01G312100 chr2A 93.750 288 15 3 1 288 571018527 571018811 1.630000e-116 429.0
17 TraesCS1A01G312100 chr2A 91.696 289 21 3 1 288 23795522 23795808 4.590000e-107 398.0
18 TraesCS1A01G312100 chr2A 92.157 255 9 8 68 322 725037718 725037475 1.300000e-92 350.0
19 TraesCS1A01G312100 chr2A 100.000 32 0 0 291 322 23795830 23795861 2.460000e-05 60.2
20 TraesCS1A01G312100 chr2A 100.000 32 0 0 291 322 571018833 571018864 2.460000e-05 60.2
21 TraesCS1A01G312100 chr7A 96.970 528 16 0 1768 2295 707844733 707845260 0.000000e+00 887.0
22 TraesCS1A01G312100 chr7A 96.212 528 20 0 1768 2295 650260403 650259876 0.000000e+00 865.0
23 TraesCS1A01G312100 chr7A 91.221 524 34 10 886 1403 707844479 707844996 0.000000e+00 702.0
24 TraesCS1A01G312100 chr7A 91.137 519 34 9 886 1399 650260655 650260144 0.000000e+00 693.0
25 TraesCS1A01G312100 chr7A 90.304 526 35 10 886 1403 650324471 650323954 0.000000e+00 675.0
26 TraesCS1A01G312100 chr7A 94.444 288 13 2 1 288 707843612 707843896 7.530000e-120 440.0
27 TraesCS1A01G312100 chr7A 90.616 341 12 6 1 322 650261494 650261155 3.500000e-118 435.0
28 TraesCS1A01G312100 chr7A 92.042 289 21 2 1 288 650325170 650324883 2.750000e-109 405.0
29 TraesCS1A01G312100 chr7A 88.612 281 26 2 1491 1769 689906203 689906479 1.020000e-88 337.0
30 TraesCS1A01G312100 chr7A 90.909 44 4 0 1464 1507 689905975 689906018 2.460000e-05 60.2
31 TraesCS1A01G312100 chr3B 96.381 525 19 0 1768 2292 59100375 59100899 0.000000e+00 865.0
32 TraesCS1A01G312100 chr3B 90.182 275 6 8 68 322 59099548 59099821 2.820000e-89 339.0
33 TraesCS1A01G312100 chr1B 96.023 528 20 1 1768 2295 658503790 658503264 0.000000e+00 857.0
34 TraesCS1A01G312100 chr1B 90.613 522 34 9 886 1400 235897887 235898400 0.000000e+00 678.0
35 TraesCS1A01G312100 chr1B 90.286 525 36 10 886 1403 658504043 658503527 0.000000e+00 673.0
36 TraesCS1A01G312100 chrUn 95.857 531 19 1 1768 2295 444178182 444177652 0.000000e+00 856.0
37 TraesCS1A01G312100 chrUn 93.750 288 17 1 1 288 248381218 248380932 4.530000e-117 431.0
38 TraesCS1A01G312100 chr7B 91.048 525 32 11 886 1403 544973108 544973624 0.000000e+00 695.0
39 TraesCS1A01G312100 chr5A 95.139 288 11 3 1 288 603018591 603018875 3.480000e-123 451.0
40 TraesCS1A01G312100 chr5A 94.097 288 15 2 1 288 507566329 507566044 9.740000e-119 436.0
41 TraesCS1A01G312100 chr2D 88.519 270 16 11 68 322 251564133 251563864 1.710000e-81 313.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G312100 chr1A 504201430 504203724 2294 False 1199.333333 2604 98.198333 1 2295 3 chr1A.!!$F2 2294
1 TraesCS1A01G312100 chr1A 380401155 380401682 527 False 854.000000 854 95.833000 1768 2295 1 chr1A.!!$F1 527
2 TraesCS1A01G312100 chr1A 531839446 531839962 516 True 678.000000 678 90.476000 886 1403 1 chr1A.!!$R1 517
3 TraesCS1A01G312100 chr1A 11025212 11026929 1717 True 618.333333 1279 97.367000 1 1668 3 chr1A.!!$R2 1667
4 TraesCS1A01G312100 chr7D 596674572 596675462 890 False 902.000000 902 85.528000 886 1769 1 chr7D.!!$F2 883
5 TraesCS1A01G312100 chr7D 191116164 191116733 569 False 534.000000 534 84.429000 1182 1730 1 chr7D.!!$F1 548
6 TraesCS1A01G312100 chr2A 600112565 600113345 780 True 794.000000 891 94.086000 886 2295 2 chr2A.!!$R2 1409
7 TraesCS1A01G312100 chr2A 571018527 571020002 1475 False 513.550000 874 95.295250 1 2295 4 chr2A.!!$F2 2294
8 TraesCS1A01G312100 chr2A 23795522 23797053 1531 False 511.050000 893 94.958500 1 2295 4 chr2A.!!$F1 2294
9 TraesCS1A01G312100 chr7A 707843612 707845260 1648 False 676.333333 887 94.211667 1 2295 3 chr7A.!!$F2 2294
10 TraesCS1A01G312100 chr7A 650259876 650261494 1618 True 664.333333 865 92.655000 1 2295 3 chr7A.!!$R1 2294
11 TraesCS1A01G312100 chr7A 650323954 650325170 1216 True 540.000000 675 91.173000 1 1403 2 chr7A.!!$R2 1402
12 TraesCS1A01G312100 chr3B 59099548 59100899 1351 False 602.000000 865 93.281500 68 2292 2 chr3B.!!$F1 2224
13 TraesCS1A01G312100 chr1B 658503264 658504043 779 True 765.000000 857 93.154500 886 2295 2 chr1B.!!$R1 1409
14 TraesCS1A01G312100 chr1B 235897887 235898400 513 False 678.000000 678 90.613000 886 1400 1 chr1B.!!$F1 514
15 TraesCS1A01G312100 chrUn 444177652 444178182 530 True 856.000000 856 95.857000 1768 2295 1 chrUn.!!$R2 527
16 TraesCS1A01G312100 chr7B 544973108 544973624 516 False 695.000000 695 91.048000 886 1403 1 chr7B.!!$F1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 157 1.893786 GATCTGAGCCGTCCACACT 59.106 57.895 0.00 0.0 0.00 3.55 F
1196 1582 0.036306 AGAGTTTACCAAGGTGGCGG 59.964 55.000 1.07 0.0 42.67 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1229 1615 0.031043 TTGACGAAGAAGCCGACGAA 59.969 50.000 0.0 0.0 0.00 3.85 R
2211 2709 2.386935 GGAACCAGCCTATGCCCCT 61.387 63.158 0.0 0.0 38.69 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 157 1.893786 GATCTGAGCCGTCCACACT 59.106 57.895 0.00 0.00 0.00 3.55
233 238 3.036959 TCCCCTCCCTCTCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
910 1081 5.596361 ACAAATCCAAACAGTACACCATTCA 59.404 36.000 0.00 0.00 0.00 2.57
913 1084 3.137544 TCCAAACAGTACACCATTCACCT 59.862 43.478 0.00 0.00 0.00 4.00
914 1085 3.888930 CCAAACAGTACACCATTCACCTT 59.111 43.478 0.00 0.00 0.00 3.50
1138 1524 1.744114 GCTCTCCTTGTTTCGGATCCC 60.744 57.143 6.06 0.00 0.00 3.85
1149 1535 1.791662 CGGATCCCGTTTGTTTCCG 59.208 57.895 6.06 0.00 42.73 4.30
1150 1536 0.952010 CGGATCCCGTTTGTTTCCGT 60.952 55.000 6.06 0.00 43.27 4.69
1151 1537 0.800631 GGATCCCGTTTGTTTCCGTC 59.199 55.000 0.00 0.00 0.00 4.79
1152 1538 0.800631 GATCCCGTTTGTTTCCGTCC 59.199 55.000 0.00 0.00 0.00 4.79
1153 1539 0.108963 ATCCCGTTTGTTTCCGTCCA 59.891 50.000 0.00 0.00 0.00 4.02
1154 1540 0.533308 TCCCGTTTGTTTCCGTCCAG 60.533 55.000 0.00 0.00 0.00 3.86
1155 1541 0.533308 CCCGTTTGTTTCCGTCCAGA 60.533 55.000 0.00 0.00 0.00 3.86
1156 1542 1.519408 CCGTTTGTTTCCGTCCAGAT 58.481 50.000 0.00 0.00 0.00 2.90
1157 1543 1.463444 CCGTTTGTTTCCGTCCAGATC 59.537 52.381 0.00 0.00 0.00 2.75
1158 1544 2.413837 CGTTTGTTTCCGTCCAGATCT 58.586 47.619 0.00 0.00 0.00 2.75
1159 1545 2.157668 CGTTTGTTTCCGTCCAGATCTG 59.842 50.000 16.24 16.24 0.00 2.90
1160 1546 3.399330 GTTTGTTTCCGTCCAGATCTGA 58.601 45.455 24.62 7.50 0.00 3.27
1161 1547 2.743636 TGTTTCCGTCCAGATCTGAC 57.256 50.000 24.62 17.47 0.00 3.51
1162 1548 1.067846 TGTTTCCGTCCAGATCTGACG 60.068 52.381 26.88 26.88 41.40 4.35
1163 1549 0.108804 TTTCCGTCCAGATCTGACGC 60.109 55.000 27.73 16.61 40.53 5.19
1164 1550 0.965866 TTCCGTCCAGATCTGACGCT 60.966 55.000 27.73 0.00 40.53 5.07
1165 1551 1.226802 CCGTCCAGATCTGACGCTG 60.227 63.158 27.73 18.13 40.53 5.18
1166 1552 1.657751 CCGTCCAGATCTGACGCTGA 61.658 60.000 27.73 15.13 40.53 4.26
1167 1553 0.383590 CGTCCAGATCTGACGCTGAT 59.616 55.000 24.62 0.00 35.56 2.90
1168 1554 1.202348 CGTCCAGATCTGACGCTGATT 60.202 52.381 24.62 0.00 35.56 2.57
1169 1555 2.736719 CGTCCAGATCTGACGCTGATTT 60.737 50.000 24.62 0.00 35.56 2.17
1170 1556 2.606725 GTCCAGATCTGACGCTGATTTG 59.393 50.000 24.62 3.19 34.06 2.32
1171 1557 1.938577 CCAGATCTGACGCTGATTTGG 59.061 52.381 24.62 15.72 37.58 3.28
1172 1558 1.329906 CAGATCTGACGCTGATTTGGC 59.670 52.381 18.34 0.00 34.06 4.52
1178 1564 2.202388 CGCTGATTTGGCGCACAG 60.202 61.111 10.83 11.17 45.83 3.66
1179 1565 2.679934 CGCTGATTTGGCGCACAGA 61.680 57.895 10.83 0.00 45.83 3.41
1180 1566 1.136147 GCTGATTTGGCGCACAGAG 59.864 57.895 10.83 0.00 32.90 3.35
1181 1567 1.580845 GCTGATTTGGCGCACAGAGT 61.581 55.000 10.83 0.00 32.90 3.24
1182 1568 0.877071 CTGATTTGGCGCACAGAGTT 59.123 50.000 10.83 0.00 32.90 3.01
1183 1569 1.267806 CTGATTTGGCGCACAGAGTTT 59.732 47.619 10.83 0.00 32.90 2.66
1184 1570 2.483877 CTGATTTGGCGCACAGAGTTTA 59.516 45.455 10.83 0.00 32.90 2.01
1185 1571 2.225491 TGATTTGGCGCACAGAGTTTAC 59.775 45.455 10.83 0.00 0.00 2.01
1186 1572 0.948678 TTTGGCGCACAGAGTTTACC 59.051 50.000 10.83 0.00 0.00 2.85
1187 1573 0.179043 TTGGCGCACAGAGTTTACCA 60.179 50.000 10.83 0.00 0.00 3.25
1188 1574 0.179043 TGGCGCACAGAGTTTACCAA 60.179 50.000 10.83 0.00 0.00 3.67
1189 1575 0.517316 GGCGCACAGAGTTTACCAAG 59.483 55.000 10.83 0.00 0.00 3.61
1190 1576 0.517316 GCGCACAGAGTTTACCAAGG 59.483 55.000 0.30 0.00 0.00 3.61
1191 1577 1.878953 CGCACAGAGTTTACCAAGGT 58.121 50.000 0.00 0.00 0.00 3.50
1192 1578 1.531149 CGCACAGAGTTTACCAAGGTG 59.469 52.381 1.07 0.00 0.00 4.00
1193 1579 1.880027 GCACAGAGTTTACCAAGGTGG 59.120 52.381 1.07 0.00 45.02 4.61
1194 1580 1.880027 CACAGAGTTTACCAAGGTGGC 59.120 52.381 1.07 0.00 42.67 5.01
1195 1581 1.156736 CAGAGTTTACCAAGGTGGCG 58.843 55.000 1.07 0.00 42.67 5.69
1196 1582 0.036306 AGAGTTTACCAAGGTGGCGG 59.964 55.000 1.07 0.00 42.67 6.13
1197 1583 1.583495 GAGTTTACCAAGGTGGCGGC 61.583 60.000 0.00 0.00 42.67 6.53
1198 1584 2.670251 TTTACCAAGGTGGCGGCG 60.670 61.111 0.51 0.51 42.67 6.46
1218 1604 4.487412 GACGGCGATCGGGTTCGT 62.487 66.667 16.62 4.29 44.45 3.85
1219 1605 4.487412 ACGGCGATCGGGTTCGTC 62.487 66.667 16.62 0.00 44.45 4.20
1221 1607 4.487412 GGCGATCGGGTTCGTCGT 62.487 66.667 18.30 0.00 41.16 4.34
1222 1608 2.948134 GCGATCGGGTTCGTCGTC 60.948 66.667 18.30 0.00 41.16 4.20
1223 1609 2.481919 CGATCGGGTTCGTCGTCA 59.518 61.111 7.38 0.00 36.22 4.35
1224 1610 1.063649 CGATCGGGTTCGTCGTCAT 59.936 57.895 7.38 0.00 36.22 3.06
1225 1611 1.200474 CGATCGGGTTCGTCGTCATG 61.200 60.000 7.38 0.00 36.22 3.07
1226 1612 0.870307 GATCGGGTTCGTCGTCATGG 60.870 60.000 0.00 0.00 37.69 3.66
1227 1613 2.292794 ATCGGGTTCGTCGTCATGGG 62.293 60.000 0.00 0.00 37.69 4.00
1228 1614 2.125269 GGGTTCGTCGTCATGGGG 60.125 66.667 0.00 0.00 0.00 4.96
1229 1615 2.660802 GGTTCGTCGTCATGGGGT 59.339 61.111 0.00 0.00 0.00 4.95
1230 1616 1.004200 GGTTCGTCGTCATGGGGTT 60.004 57.895 0.00 0.00 0.00 4.11
1231 1617 1.017701 GGTTCGTCGTCATGGGGTTC 61.018 60.000 0.00 0.00 0.00 3.62
1232 1618 1.080366 TTCGTCGTCATGGGGTTCG 60.080 57.895 0.00 0.00 0.00 3.95
1233 1619 1.808531 TTCGTCGTCATGGGGTTCGT 61.809 55.000 0.00 0.00 0.00 3.85
1234 1620 1.804326 CGTCGTCATGGGGTTCGTC 60.804 63.158 0.00 0.00 0.00 4.20
1235 1621 1.804326 GTCGTCATGGGGTTCGTCG 60.804 63.158 0.00 0.00 0.00 5.12
1236 1622 2.508439 CGTCATGGGGTTCGTCGG 60.508 66.667 0.00 0.00 0.00 4.79
1237 1623 2.818274 GTCATGGGGTTCGTCGGC 60.818 66.667 0.00 0.00 0.00 5.54
1238 1624 3.000819 TCATGGGGTTCGTCGGCT 61.001 61.111 0.00 0.00 0.00 5.52
1239 1625 2.046314 CATGGGGTTCGTCGGCTT 60.046 61.111 0.00 0.00 0.00 4.35
1240 1626 2.106683 CATGGGGTTCGTCGGCTTC 61.107 63.158 0.00 0.00 0.00 3.86
1241 1627 2.291043 ATGGGGTTCGTCGGCTTCT 61.291 57.895 0.00 0.00 0.00 2.85
1242 1628 1.838073 ATGGGGTTCGTCGGCTTCTT 61.838 55.000 0.00 0.00 0.00 2.52
1243 1629 1.740664 GGGGTTCGTCGGCTTCTTC 60.741 63.158 0.00 0.00 0.00 2.87
1244 1630 2.092882 GGGTTCGTCGGCTTCTTCG 61.093 63.158 0.00 0.00 0.00 3.79
1245 1631 1.372623 GGTTCGTCGGCTTCTTCGT 60.373 57.895 0.00 0.00 0.00 3.85
1246 1632 1.342796 GGTTCGTCGGCTTCTTCGTC 61.343 60.000 0.00 0.00 0.00 4.20
1247 1633 0.662374 GTTCGTCGGCTTCTTCGTCA 60.662 55.000 0.00 0.00 0.00 4.35
1248 1634 0.031043 TTCGTCGGCTTCTTCGTCAA 59.969 50.000 0.00 0.00 0.00 3.18
1249 1635 0.386858 TCGTCGGCTTCTTCGTCAAG 60.387 55.000 0.00 0.00 0.00 3.02
1250 1636 1.782181 GTCGGCTTCTTCGTCAAGC 59.218 57.895 7.06 7.06 44.79 4.01
1251 1637 0.667792 GTCGGCTTCTTCGTCAAGCT 60.668 55.000 13.02 0.00 44.87 3.74
1252 1638 0.388649 TCGGCTTCTTCGTCAAGCTC 60.389 55.000 13.02 5.49 44.87 4.09
1253 1639 0.667487 CGGCTTCTTCGTCAAGCTCA 60.667 55.000 13.02 0.00 44.87 4.26
1254 1640 1.731720 GGCTTCTTCGTCAAGCTCAT 58.268 50.000 13.02 0.00 44.87 2.90
1255 1641 1.663135 GGCTTCTTCGTCAAGCTCATC 59.337 52.381 13.02 0.00 44.87 2.92
1256 1642 2.615869 GCTTCTTCGTCAAGCTCATCT 58.384 47.619 8.03 0.00 42.63 2.90
1257 1643 2.999355 GCTTCTTCGTCAAGCTCATCTT 59.001 45.455 8.03 0.00 42.63 2.40
1258 1644 3.061965 GCTTCTTCGTCAAGCTCATCTTC 59.938 47.826 8.03 0.00 42.63 2.87
1259 1645 3.942130 TCTTCGTCAAGCTCATCTTCA 57.058 42.857 0.00 0.00 31.27 3.02
1260 1646 4.462508 TCTTCGTCAAGCTCATCTTCAT 57.537 40.909 0.00 0.00 31.27 2.57
1261 1647 4.428209 TCTTCGTCAAGCTCATCTTCATC 58.572 43.478 0.00 0.00 31.27 2.92
1262 1648 3.170791 TCGTCAAGCTCATCTTCATCC 57.829 47.619 0.00 0.00 31.27 3.51
1263 1649 2.159043 TCGTCAAGCTCATCTTCATCCC 60.159 50.000 0.00 0.00 31.27 3.85
1264 1650 2.570135 GTCAAGCTCATCTTCATCCCC 58.430 52.381 0.00 0.00 31.27 4.81
1265 1651 2.092753 GTCAAGCTCATCTTCATCCCCA 60.093 50.000 0.00 0.00 31.27 4.96
1266 1652 2.781757 TCAAGCTCATCTTCATCCCCAT 59.218 45.455 0.00 0.00 31.27 4.00
1267 1653 3.147629 CAAGCTCATCTTCATCCCCATC 58.852 50.000 0.00 0.00 31.27 3.51
1268 1654 2.415624 AGCTCATCTTCATCCCCATCA 58.584 47.619 0.00 0.00 0.00 3.07
1269 1655 2.781757 AGCTCATCTTCATCCCCATCAA 59.218 45.455 0.00 0.00 0.00 2.57
1270 1656 2.883386 GCTCATCTTCATCCCCATCAAC 59.117 50.000 0.00 0.00 0.00 3.18
1271 1657 3.686405 GCTCATCTTCATCCCCATCAACA 60.686 47.826 0.00 0.00 0.00 3.33
1272 1658 4.529897 CTCATCTTCATCCCCATCAACAA 58.470 43.478 0.00 0.00 0.00 2.83
1273 1659 4.272489 TCATCTTCATCCCCATCAACAAC 58.728 43.478 0.00 0.00 0.00 3.32
1274 1660 3.805066 TCTTCATCCCCATCAACAACA 57.195 42.857 0.00 0.00 0.00 3.33
1275 1661 4.320546 TCTTCATCCCCATCAACAACAT 57.679 40.909 0.00 0.00 0.00 2.71
1276 1662 4.272489 TCTTCATCCCCATCAACAACATC 58.728 43.478 0.00 0.00 0.00 3.06
1277 1663 3.735720 TCATCCCCATCAACAACATCA 57.264 42.857 0.00 0.00 0.00 3.07
1278 1664 4.254039 TCATCCCCATCAACAACATCAT 57.746 40.909 0.00 0.00 0.00 2.45
1279 1665 4.209538 TCATCCCCATCAACAACATCATC 58.790 43.478 0.00 0.00 0.00 2.92
1280 1666 2.642427 TCCCCATCAACAACATCATCG 58.358 47.619 0.00 0.00 0.00 3.84
1281 1667 2.026356 TCCCCATCAACAACATCATCGT 60.026 45.455 0.00 0.00 0.00 3.73
1282 1668 2.355756 CCCCATCAACAACATCATCGTC 59.644 50.000 0.00 0.00 0.00 4.20
1283 1669 2.030823 CCCATCAACAACATCATCGTCG 59.969 50.000 0.00 0.00 0.00 5.12
1284 1670 2.030823 CCATCAACAACATCATCGTCGG 59.969 50.000 0.00 0.00 0.00 4.79
1285 1671 1.075542 TCAACAACATCATCGTCGGC 58.924 50.000 0.00 0.00 0.00 5.54
1286 1672 1.078709 CAACAACATCATCGTCGGCT 58.921 50.000 0.00 0.00 0.00 5.52
1287 1673 1.061131 CAACAACATCATCGTCGGCTC 59.939 52.381 0.00 0.00 0.00 4.70
1288 1674 0.532573 ACAACATCATCGTCGGCTCT 59.467 50.000 0.00 0.00 0.00 4.09
1289 1675 0.926155 CAACATCATCGTCGGCTCTG 59.074 55.000 0.00 0.00 0.00 3.35
1290 1676 0.179100 AACATCATCGTCGGCTCTGG 60.179 55.000 0.00 0.00 0.00 3.86
1291 1677 1.953138 CATCATCGTCGGCTCTGGC 60.953 63.158 0.00 0.00 37.82 4.85
1292 1678 2.130426 ATCATCGTCGGCTCTGGCT 61.130 57.895 0.00 0.00 38.73 4.75
1293 1679 0.823769 ATCATCGTCGGCTCTGGCTA 60.824 55.000 0.00 0.00 38.73 3.93
1294 1680 1.007964 CATCGTCGGCTCTGGCTAG 60.008 63.158 0.00 0.00 38.73 3.42
1295 1681 2.196925 ATCGTCGGCTCTGGCTAGG 61.197 63.158 0.00 0.00 38.73 3.02
1296 1682 2.912987 ATCGTCGGCTCTGGCTAGGT 62.913 60.000 0.00 0.00 38.73 3.08
1297 1683 2.496817 GTCGGCTCTGGCTAGGTG 59.503 66.667 0.00 0.00 38.73 4.00
1298 1684 3.461773 TCGGCTCTGGCTAGGTGC 61.462 66.667 0.00 2.30 41.94 5.01
1299 1685 4.880537 CGGCTCTGGCTAGGTGCG 62.881 72.222 0.00 0.00 44.05 5.34
1300 1686 3.461773 GGCTCTGGCTAGGTGCGA 61.462 66.667 0.00 0.00 44.05 5.10
1301 1687 2.579201 GCTCTGGCTAGGTGCGAA 59.421 61.111 0.00 0.00 44.05 4.70
1302 1688 1.811679 GCTCTGGCTAGGTGCGAAC 60.812 63.158 0.00 0.00 44.05 3.95
1303 1689 1.517257 CTCTGGCTAGGTGCGAACG 60.517 63.158 0.00 0.00 44.05 3.95
1304 1690 3.188786 CTGGCTAGGTGCGAACGC 61.189 66.667 12.33 12.33 44.05 4.84
1307 1693 3.542742 GCTAGGTGCGAACGCGTC 61.543 66.667 14.44 5.31 45.51 5.19
1308 1694 2.178521 CTAGGTGCGAACGCGTCT 59.821 61.111 14.44 6.68 45.51 4.18
1309 1695 1.868251 CTAGGTGCGAACGCGTCTC 60.868 63.158 14.44 11.71 45.51 3.36
1310 1696 3.332493 TAGGTGCGAACGCGTCTCC 62.332 63.158 14.44 10.96 45.51 3.71
1311 1697 4.719369 GGTGCGAACGCGTCTCCT 62.719 66.667 14.44 0.00 45.51 3.69
1312 1698 3.173240 GTGCGAACGCGTCTCCTC 61.173 66.667 14.44 5.19 45.51 3.71
1313 1699 4.415332 TGCGAACGCGTCTCCTCC 62.415 66.667 14.44 1.21 45.51 4.30
1315 1701 3.796443 CGAACGCGTCTCCTCCGA 61.796 66.667 14.44 0.00 0.00 4.55
1316 1702 2.799371 GAACGCGTCTCCTCCGAT 59.201 61.111 14.44 0.00 0.00 4.18
1317 1703 1.298488 GAACGCGTCTCCTCCGATC 60.298 63.158 14.44 0.00 0.00 3.69
1318 1704 2.665172 GAACGCGTCTCCTCCGATCC 62.665 65.000 14.44 0.00 0.00 3.36
1319 1705 3.967335 CGCGTCTCCTCCGATCCC 61.967 72.222 0.00 0.00 0.00 3.85
1320 1706 3.967335 GCGTCTCCTCCGATCCCG 61.967 72.222 0.00 0.00 0.00 5.14
1321 1707 2.516460 CGTCTCCTCCGATCCCGT 60.516 66.667 0.00 0.00 0.00 5.28
1322 1708 2.544698 CGTCTCCTCCGATCCCGTC 61.545 68.421 0.00 0.00 0.00 4.79
1323 1709 1.152922 GTCTCCTCCGATCCCGTCT 60.153 63.158 0.00 0.00 0.00 4.18
1324 1710 1.148723 TCTCCTCCGATCCCGTCTC 59.851 63.158 0.00 0.00 0.00 3.36
1325 1711 1.899534 CTCCTCCGATCCCGTCTCC 60.900 68.421 0.00 0.00 0.00 3.71
1326 1712 2.913060 CCTCCGATCCCGTCTCCC 60.913 72.222 0.00 0.00 0.00 4.30
1327 1713 2.196229 CTCCGATCCCGTCTCCCT 59.804 66.667 0.00 0.00 0.00 4.20
1328 1714 1.899534 CTCCGATCCCGTCTCCCTC 60.900 68.421 0.00 0.00 0.00 4.30
1329 1715 2.196229 CCGATCCCGTCTCCCTCT 59.804 66.667 0.00 0.00 0.00 3.69
1330 1716 1.455959 CCGATCCCGTCTCCCTCTT 60.456 63.158 0.00 0.00 0.00 2.85
1331 1717 1.736586 CGATCCCGTCTCCCTCTTG 59.263 63.158 0.00 0.00 0.00 3.02
1332 1718 1.443828 GATCCCGTCTCCCTCTTGC 59.556 63.158 0.00 0.00 0.00 4.01
1333 1719 1.002274 ATCCCGTCTCCCTCTTGCT 59.998 57.895 0.00 0.00 0.00 3.91
1334 1720 0.618968 ATCCCGTCTCCCTCTTGCTT 60.619 55.000 0.00 0.00 0.00 3.91
1335 1721 1.078848 CCCGTCTCCCTCTTGCTTG 60.079 63.158 0.00 0.00 0.00 4.01
1336 1722 1.743252 CCGTCTCCCTCTTGCTTGC 60.743 63.158 0.00 0.00 0.00 4.01
1337 1723 1.004560 CGTCTCCCTCTTGCTTGCA 60.005 57.895 0.00 0.00 0.00 4.08
1338 1724 1.294659 CGTCTCCCTCTTGCTTGCAC 61.295 60.000 0.00 0.00 0.00 4.57
1339 1725 1.004560 TCTCCCTCTTGCTTGCACG 60.005 57.895 0.00 0.00 0.00 5.34
1340 1726 2.032528 TCCCTCTTGCTTGCACGG 59.967 61.111 0.00 0.00 0.00 4.94
1341 1727 2.281761 CCCTCTTGCTTGCACGGT 60.282 61.111 0.00 0.00 0.00 4.83
1342 1728 1.898574 CCCTCTTGCTTGCACGGTT 60.899 57.895 0.00 0.00 0.00 4.44
1343 1729 1.455383 CCCTCTTGCTTGCACGGTTT 61.455 55.000 0.00 0.00 0.00 3.27
1344 1730 1.234821 CCTCTTGCTTGCACGGTTTA 58.765 50.000 0.00 0.00 0.00 2.01
1345 1731 1.197721 CCTCTTGCTTGCACGGTTTAG 59.802 52.381 0.00 0.00 0.00 1.85
1346 1732 1.873591 CTCTTGCTTGCACGGTTTAGT 59.126 47.619 0.00 0.00 0.00 2.24
1347 1733 2.290641 CTCTTGCTTGCACGGTTTAGTT 59.709 45.455 0.00 0.00 0.00 2.24
1348 1734 3.468770 TCTTGCTTGCACGGTTTAGTTA 58.531 40.909 0.00 0.00 0.00 2.24
1349 1735 3.496884 TCTTGCTTGCACGGTTTAGTTAG 59.503 43.478 0.00 0.00 0.00 2.34
1350 1736 3.114668 TGCTTGCACGGTTTAGTTAGA 57.885 42.857 0.00 0.00 0.00 2.10
1351 1737 2.803956 TGCTTGCACGGTTTAGTTAGAC 59.196 45.455 0.00 0.00 0.00 2.59
1352 1738 3.064931 GCTTGCACGGTTTAGTTAGACT 58.935 45.455 0.00 0.00 0.00 3.24
1353 1739 3.497262 GCTTGCACGGTTTAGTTAGACTT 59.503 43.478 0.00 0.00 0.00 3.01
1354 1740 4.610680 GCTTGCACGGTTTAGTTAGACTTG 60.611 45.833 0.00 0.00 0.00 3.16
1355 1741 3.395639 TGCACGGTTTAGTTAGACTTGG 58.604 45.455 0.00 0.00 0.00 3.61
1356 1742 3.181463 TGCACGGTTTAGTTAGACTTGGT 60.181 43.478 0.00 0.00 0.00 3.67
1357 1743 3.811497 GCACGGTTTAGTTAGACTTGGTT 59.189 43.478 0.00 0.00 0.00 3.67
1358 1744 4.084171 GCACGGTTTAGTTAGACTTGGTTC 60.084 45.833 0.00 0.00 0.00 3.62
1359 1745 4.450080 CACGGTTTAGTTAGACTTGGTTCC 59.550 45.833 0.00 0.00 0.00 3.62
1360 1746 4.346127 ACGGTTTAGTTAGACTTGGTTCCT 59.654 41.667 0.00 0.00 0.00 3.36
1361 1747 4.689345 CGGTTTAGTTAGACTTGGTTCCTG 59.311 45.833 0.00 0.00 0.00 3.86
1362 1748 5.618236 GGTTTAGTTAGACTTGGTTCCTGT 58.382 41.667 0.00 0.00 0.00 4.00
1363 1749 6.060136 GGTTTAGTTAGACTTGGTTCCTGTT 58.940 40.000 0.00 0.00 0.00 3.16
1364 1750 6.017357 GGTTTAGTTAGACTTGGTTCCTGTTG 60.017 42.308 0.00 0.00 0.00 3.33
1365 1751 4.772886 AGTTAGACTTGGTTCCTGTTGT 57.227 40.909 0.00 0.00 0.00 3.32
1366 1752 4.704965 AGTTAGACTTGGTTCCTGTTGTC 58.295 43.478 0.00 0.00 0.00 3.18
1367 1753 4.409247 AGTTAGACTTGGTTCCTGTTGTCT 59.591 41.667 0.00 0.00 38.21 3.41
1368 1754 3.477210 AGACTTGGTTCCTGTTGTCTC 57.523 47.619 0.00 0.00 30.08 3.36
1369 1755 2.135933 GACTTGGTTCCTGTTGTCTCG 58.864 52.381 0.00 0.00 0.00 4.04
1370 1756 1.485066 ACTTGGTTCCTGTTGTCTCGT 59.515 47.619 0.00 0.00 0.00 4.18
1371 1757 1.867233 CTTGGTTCCTGTTGTCTCGTG 59.133 52.381 0.00 0.00 0.00 4.35
1372 1758 0.531974 TGGTTCCTGTTGTCTCGTGC 60.532 55.000 0.00 0.00 0.00 5.34
1373 1759 0.249911 GGTTCCTGTTGTCTCGTGCT 60.250 55.000 0.00 0.00 0.00 4.40
1374 1760 0.861837 GTTCCTGTTGTCTCGTGCTG 59.138 55.000 0.00 0.00 0.00 4.41
1375 1761 0.464036 TTCCTGTTGTCTCGTGCTGT 59.536 50.000 0.00 0.00 0.00 4.40
1376 1762 0.249447 TCCTGTTGTCTCGTGCTGTG 60.249 55.000 0.00 0.00 0.00 3.66
1377 1763 0.249447 CCTGTTGTCTCGTGCTGTGA 60.249 55.000 0.00 0.00 0.00 3.58
1378 1764 1.606480 CCTGTTGTCTCGTGCTGTGAT 60.606 52.381 0.00 0.00 0.00 3.06
1379 1765 1.723542 CTGTTGTCTCGTGCTGTGATC 59.276 52.381 0.00 0.00 0.00 2.92
1380 1766 1.341209 TGTTGTCTCGTGCTGTGATCT 59.659 47.619 0.00 0.00 0.00 2.75
1381 1767 1.723542 GTTGTCTCGTGCTGTGATCTG 59.276 52.381 0.00 0.00 0.00 2.90
1382 1768 0.961753 TGTCTCGTGCTGTGATCTGT 59.038 50.000 0.00 0.00 0.00 3.41
1383 1769 1.341209 TGTCTCGTGCTGTGATCTGTT 59.659 47.619 0.00 0.00 0.00 3.16
1384 1770 1.723542 GTCTCGTGCTGTGATCTGTTG 59.276 52.381 0.00 0.00 0.00 3.33
1385 1771 1.073964 CTCGTGCTGTGATCTGTTGG 58.926 55.000 0.00 0.00 0.00 3.77
1386 1772 0.678950 TCGTGCTGTGATCTGTTGGA 59.321 50.000 0.00 0.00 0.00 3.53
1387 1773 1.276138 TCGTGCTGTGATCTGTTGGAT 59.724 47.619 0.00 0.00 37.37 3.41
1394 1780 3.768633 GATCTGTTGGATCTGCGGT 57.231 52.632 0.00 0.00 45.38 5.68
1395 1781 1.293924 GATCTGTTGGATCTGCGGTG 58.706 55.000 0.00 0.00 45.38 4.94
1396 1782 0.615331 ATCTGTTGGATCTGCGGTGT 59.385 50.000 0.00 0.00 0.00 4.16
1397 1783 0.320683 TCTGTTGGATCTGCGGTGTG 60.321 55.000 0.00 0.00 0.00 3.82
1398 1784 1.915614 CTGTTGGATCTGCGGTGTGC 61.916 60.000 0.00 0.00 46.70 4.57
1424 1810 3.460868 CCCCAGGGATTTTGCGGC 61.461 66.667 7.25 0.00 37.50 6.53
1425 1811 2.362889 CCCAGGGATTTTGCGGCT 60.363 61.111 0.00 0.00 0.00 5.52
1426 1812 2.713967 CCCAGGGATTTTGCGGCTG 61.714 63.158 0.00 0.00 0.00 4.85
1427 1813 2.182537 CAGGGATTTTGCGGCTGC 59.817 61.111 11.65 11.65 43.20 5.25
1445 1831 2.559785 CAGGCCTGCGAAATTGAGT 58.440 52.632 22.33 0.00 0.00 3.41
1446 1832 0.883833 CAGGCCTGCGAAATTGAGTT 59.116 50.000 22.33 0.00 0.00 3.01
1447 1833 1.135575 CAGGCCTGCGAAATTGAGTTC 60.136 52.381 22.33 0.00 0.00 3.01
1448 1834 0.171231 GGCCTGCGAAATTGAGTTCC 59.829 55.000 0.00 0.00 0.00 3.62
1449 1835 0.179189 GCCTGCGAAATTGAGTTCCG 60.179 55.000 0.00 0.00 0.00 4.30
1450 1836 1.156736 CCTGCGAAATTGAGTTCCGT 58.843 50.000 0.00 0.00 0.00 4.69
1451 1837 1.535462 CCTGCGAAATTGAGTTCCGTT 59.465 47.619 0.00 0.00 0.00 4.44
1452 1838 2.574322 CTGCGAAATTGAGTTCCGTTG 58.426 47.619 0.00 0.00 0.00 4.10
1453 1839 2.214347 TGCGAAATTGAGTTCCGTTGA 58.786 42.857 0.00 0.00 0.00 3.18
1454 1840 2.032377 TGCGAAATTGAGTTCCGTTGAC 60.032 45.455 0.00 0.00 0.00 3.18
1455 1841 2.032377 GCGAAATTGAGTTCCGTTGACA 60.032 45.455 0.00 0.00 0.00 3.58
1456 1842 3.364964 GCGAAATTGAGTTCCGTTGACAT 60.365 43.478 0.00 0.00 0.00 3.06
1457 1843 4.783242 CGAAATTGAGTTCCGTTGACATT 58.217 39.130 0.00 0.00 0.00 2.71
1458 1844 4.846137 CGAAATTGAGTTCCGTTGACATTC 59.154 41.667 0.00 0.00 0.00 2.67
1459 1845 4.404507 AATTGAGTTCCGTTGACATTCG 57.595 40.909 0.00 0.00 0.00 3.34
1460 1846 1.790755 TGAGTTCCGTTGACATTCGG 58.209 50.000 11.72 11.72 46.93 4.30
1461 1847 0.442699 GAGTTCCGTTGACATTCGGC 59.557 55.000 12.74 3.12 45.44 5.54
1462 1848 0.034896 AGTTCCGTTGACATTCGGCT 59.965 50.000 12.74 4.93 45.44 5.52
1463 1849 0.872388 GTTCCGTTGACATTCGGCTT 59.128 50.000 12.74 0.00 45.44 4.35
1464 1850 1.265905 GTTCCGTTGACATTCGGCTTT 59.734 47.619 12.74 0.00 45.44 3.51
1465 1851 1.600023 TCCGTTGACATTCGGCTTTT 58.400 45.000 12.74 0.00 45.44 2.27
1466 1852 1.265635 TCCGTTGACATTCGGCTTTTG 59.734 47.619 12.74 0.00 45.44 2.44
1467 1853 1.265635 CCGTTGACATTCGGCTTTTGA 59.734 47.619 6.65 0.00 40.28 2.69
1468 1854 2.287308 CCGTTGACATTCGGCTTTTGAA 60.287 45.455 6.65 0.00 40.28 2.69
1469 1855 3.564511 CGTTGACATTCGGCTTTTGAAT 58.435 40.909 0.00 0.00 36.52 2.57
1470 1856 4.378978 CCGTTGACATTCGGCTTTTGAATA 60.379 41.667 6.65 0.00 40.28 1.75
1471 1857 5.331902 CGTTGACATTCGGCTTTTGAATAT 58.668 37.500 0.00 0.00 34.41 1.28
1472 1858 5.227805 CGTTGACATTCGGCTTTTGAATATG 59.772 40.000 0.00 0.00 34.41 1.78
1473 1859 5.895636 TGACATTCGGCTTTTGAATATGT 57.104 34.783 0.00 0.00 34.41 2.29
1474 1860 6.266168 TGACATTCGGCTTTTGAATATGTT 57.734 33.333 0.00 0.00 34.41 2.71
1475 1861 6.092092 TGACATTCGGCTTTTGAATATGTTG 58.908 36.000 0.00 0.00 34.41 3.33
1476 1862 5.410067 ACATTCGGCTTTTGAATATGTTGG 58.590 37.500 0.00 0.00 34.41 3.77
1477 1863 4.448537 TTCGGCTTTTGAATATGTTGGG 57.551 40.909 0.00 0.00 0.00 4.12
1478 1864 3.426615 TCGGCTTTTGAATATGTTGGGT 58.573 40.909 0.00 0.00 0.00 4.51
1479 1865 3.829601 TCGGCTTTTGAATATGTTGGGTT 59.170 39.130 0.00 0.00 0.00 4.11
1480 1866 4.282195 TCGGCTTTTGAATATGTTGGGTTT 59.718 37.500 0.00 0.00 0.00 3.27
1481 1867 4.994217 CGGCTTTTGAATATGTTGGGTTTT 59.006 37.500 0.00 0.00 0.00 2.43
1482 1868 6.015350 TCGGCTTTTGAATATGTTGGGTTTTA 60.015 34.615 0.00 0.00 0.00 1.52
1483 1869 6.310224 CGGCTTTTGAATATGTTGGGTTTTAG 59.690 38.462 0.00 0.00 0.00 1.85
1484 1870 6.092122 GGCTTTTGAATATGTTGGGTTTTAGC 59.908 38.462 0.00 0.00 0.00 3.09
1485 1871 6.648725 GCTTTTGAATATGTTGGGTTTTAGCA 59.351 34.615 0.00 0.00 0.00 3.49
1486 1872 7.360017 GCTTTTGAATATGTTGGGTTTTAGCAC 60.360 37.037 0.00 0.00 0.00 4.40
1487 1873 6.656632 TTGAATATGTTGGGTTTTAGCACA 57.343 33.333 0.00 0.00 0.00 4.57
1488 1874 6.849085 TGAATATGTTGGGTTTTAGCACAT 57.151 33.333 0.00 0.00 32.80 3.21
1489 1875 6.862209 TGAATATGTTGGGTTTTAGCACATC 58.138 36.000 0.00 0.00 30.70 3.06
1490 1876 6.663093 TGAATATGTTGGGTTTTAGCACATCT 59.337 34.615 0.00 0.00 30.70 2.90
1491 1877 7.178274 TGAATATGTTGGGTTTTAGCACATCTT 59.822 33.333 0.00 0.00 30.70 2.40
1492 1878 4.846779 TGTTGGGTTTTAGCACATCTTC 57.153 40.909 0.00 0.00 0.00 2.87
1493 1879 4.469657 TGTTGGGTTTTAGCACATCTTCT 58.530 39.130 0.00 0.00 0.00 2.85
1494 1880 4.892934 TGTTGGGTTTTAGCACATCTTCTT 59.107 37.500 0.00 0.00 0.00 2.52
1495 1881 6.065374 TGTTGGGTTTTAGCACATCTTCTTA 58.935 36.000 0.00 0.00 0.00 2.10
1496 1882 6.206634 TGTTGGGTTTTAGCACATCTTCTTAG 59.793 38.462 0.00 0.00 0.00 2.18
1497 1883 5.253330 TGGGTTTTAGCACATCTTCTTAGG 58.747 41.667 0.00 0.00 0.00 2.69
1498 1884 5.013704 TGGGTTTTAGCACATCTTCTTAGGA 59.986 40.000 0.00 0.00 0.00 2.94
1499 1885 5.944007 GGGTTTTAGCACATCTTCTTAGGAA 59.056 40.000 0.00 0.00 0.00 3.36
1500 1886 6.433093 GGGTTTTAGCACATCTTCTTAGGAAA 59.567 38.462 0.00 0.00 0.00 3.13
1501 1887 7.122799 GGGTTTTAGCACATCTTCTTAGGAAAT 59.877 37.037 0.00 0.00 0.00 2.17
1502 1888 8.523658 GGTTTTAGCACATCTTCTTAGGAAATT 58.476 33.333 0.00 0.00 0.00 1.82
1503 1889 9.561270 GTTTTAGCACATCTTCTTAGGAAATTC 57.439 33.333 0.00 0.00 0.00 2.17
1504 1890 7.865706 TTAGCACATCTTCTTAGGAAATTCC 57.134 36.000 3.29 3.29 36.58 3.01
1553 1939 7.497773 AAGTTAGGTTTTAGTAGATCCTGCT 57.502 36.000 1.39 0.00 0.00 4.24
1554 1940 8.605325 AAGTTAGGTTTTAGTAGATCCTGCTA 57.395 34.615 1.39 0.00 0.00 3.49
1555 1941 8.605325 AGTTAGGTTTTAGTAGATCCTGCTAA 57.395 34.615 1.39 0.00 37.01 3.09
1556 1942 9.214962 AGTTAGGTTTTAGTAGATCCTGCTAAT 57.785 33.333 5.58 0.00 38.17 1.73
1557 1943 9.833917 GTTAGGTTTTAGTAGATCCTGCTAATT 57.166 33.333 5.58 0.00 38.17 1.40
1559 1945 8.966069 AGGTTTTAGTAGATCCTGCTAATTTC 57.034 34.615 5.58 1.44 38.17 2.17
1560 1946 7.993758 AGGTTTTAGTAGATCCTGCTAATTTCC 59.006 37.037 5.58 8.07 38.17 3.13
1561 1947 7.993758 GGTTTTAGTAGATCCTGCTAATTTCCT 59.006 37.037 5.58 0.00 38.17 3.36
1564 1950 9.435570 TTTAGTAGATCCTGCTAATTTCCTAGT 57.564 33.333 5.58 0.00 38.17 2.57
1565 1951 7.922699 AGTAGATCCTGCTAATTTCCTAGTT 57.077 36.000 0.00 0.00 0.00 2.24
1566 1952 8.325477 AGTAGATCCTGCTAATTTCCTAGTTT 57.675 34.615 0.00 0.00 0.00 2.66
1567 1953 8.207545 AGTAGATCCTGCTAATTTCCTAGTTTG 58.792 37.037 0.00 0.00 0.00 2.93
1568 1954 6.963322 AGATCCTGCTAATTTCCTAGTTTGT 58.037 36.000 0.00 0.00 0.00 2.83
1569 1955 7.406104 AGATCCTGCTAATTTCCTAGTTTGTT 58.594 34.615 0.00 0.00 0.00 2.83
1570 1956 8.548877 AGATCCTGCTAATTTCCTAGTTTGTTA 58.451 33.333 0.00 0.00 0.00 2.41
1571 1957 8.738645 ATCCTGCTAATTTCCTAGTTTGTTAG 57.261 34.615 0.00 0.00 0.00 2.34
1572 1958 7.110155 TCCTGCTAATTTCCTAGTTTGTTAGG 58.890 38.462 0.00 0.00 41.36 2.69
1573 1959 7.037873 TCCTGCTAATTTCCTAGTTTGTTAGGA 60.038 37.037 0.00 0.00 45.79 2.94
1581 1967 6.062258 TCCTAGTTTGTTAGGAGAATTGGG 57.938 41.667 0.00 0.00 43.30 4.12
1582 1968 5.788533 TCCTAGTTTGTTAGGAGAATTGGGA 59.211 40.000 0.00 0.00 43.30 4.37
1583 1969 6.447084 TCCTAGTTTGTTAGGAGAATTGGGAT 59.553 38.462 0.00 0.00 43.30 3.85
1584 1970 6.543831 CCTAGTTTGTTAGGAGAATTGGGATG 59.456 42.308 0.00 0.00 42.39 3.51
1585 1971 6.139679 AGTTTGTTAGGAGAATTGGGATGA 57.860 37.500 0.00 0.00 0.00 2.92
1586 1972 6.552008 AGTTTGTTAGGAGAATTGGGATGAA 58.448 36.000 0.00 0.00 0.00 2.57
1587 1973 7.184862 AGTTTGTTAGGAGAATTGGGATGAAT 58.815 34.615 0.00 0.00 0.00 2.57
1588 1974 7.675619 AGTTTGTTAGGAGAATTGGGATGAATT 59.324 33.333 0.00 0.00 0.00 2.17
1589 1975 7.645058 TTGTTAGGAGAATTGGGATGAATTC 57.355 36.000 0.00 0.00 41.02 2.17
1590 1976 6.730447 TGTTAGGAGAATTGGGATGAATTCA 58.270 36.000 11.26 11.26 42.50 2.57
1591 1977 6.830324 TGTTAGGAGAATTGGGATGAATTCAG 59.170 38.462 14.54 0.00 42.50 3.02
1592 1978 4.801164 AGGAGAATTGGGATGAATTCAGG 58.199 43.478 14.54 0.00 42.50 3.86
1593 1979 3.893813 GGAGAATTGGGATGAATTCAGGG 59.106 47.826 14.54 0.00 42.50 4.45
1594 1980 4.540715 GAGAATTGGGATGAATTCAGGGT 58.459 43.478 14.54 0.00 42.50 4.34
1595 1981 5.399038 GGAGAATTGGGATGAATTCAGGGTA 60.399 44.000 14.54 0.00 42.50 3.69
1596 1982 5.699143 AGAATTGGGATGAATTCAGGGTAG 58.301 41.667 14.54 0.00 42.50 3.18
1597 1983 5.194537 AGAATTGGGATGAATTCAGGGTAGT 59.805 40.000 14.54 0.00 42.50 2.73
1598 1984 4.503714 TTGGGATGAATTCAGGGTAGTC 57.496 45.455 14.54 5.18 0.00 2.59
1599 1985 3.459828 TGGGATGAATTCAGGGTAGTCA 58.540 45.455 14.54 2.89 0.00 3.41
1600 1986 3.455910 TGGGATGAATTCAGGGTAGTCAG 59.544 47.826 14.54 0.00 0.00 3.51
1601 1987 3.471680 GGATGAATTCAGGGTAGTCAGC 58.528 50.000 14.54 0.00 0.00 4.26
1602 1988 3.135530 GGATGAATTCAGGGTAGTCAGCT 59.864 47.826 14.54 0.00 0.00 4.24
1603 1989 3.616956 TGAATTCAGGGTAGTCAGCTG 57.383 47.619 7.63 7.63 0.00 4.24
1604 1990 2.906389 TGAATTCAGGGTAGTCAGCTGT 59.094 45.455 14.67 0.00 0.00 4.40
1605 1991 3.265791 GAATTCAGGGTAGTCAGCTGTG 58.734 50.000 14.67 2.49 0.00 3.66
1606 1992 0.976641 TTCAGGGTAGTCAGCTGTGG 59.023 55.000 14.67 0.00 0.00 4.17
1607 1993 0.904865 TCAGGGTAGTCAGCTGTGGG 60.905 60.000 14.67 0.00 0.00 4.61
1608 1994 1.613630 AGGGTAGTCAGCTGTGGGG 60.614 63.158 14.67 0.00 0.00 4.96
1609 1995 1.612442 GGGTAGTCAGCTGTGGGGA 60.612 63.158 14.67 0.00 0.00 4.81
1610 1996 1.198759 GGGTAGTCAGCTGTGGGGAA 61.199 60.000 14.67 0.00 0.00 3.97
1611 1997 0.036294 GGTAGTCAGCTGTGGGGAAC 60.036 60.000 14.67 2.98 0.00 3.62
1612 1998 0.977395 GTAGTCAGCTGTGGGGAACT 59.023 55.000 14.67 11.02 0.00 3.01
1613 1999 0.976641 TAGTCAGCTGTGGGGAACTG 59.023 55.000 14.67 0.00 0.00 3.16
1614 2000 1.302832 GTCAGCTGTGGGGAACTGG 60.303 63.158 14.67 0.00 0.00 4.00
1615 2001 2.034687 CAGCTGTGGGGAACTGGG 59.965 66.667 5.25 0.00 0.00 4.45
1616 2002 3.260100 AGCTGTGGGGAACTGGGG 61.260 66.667 0.00 0.00 0.00 4.96
1617 2003 4.366684 GCTGTGGGGAACTGGGGG 62.367 72.222 0.00 0.00 0.00 5.40
1618 2004 2.858974 CTGTGGGGAACTGGGGGT 60.859 66.667 0.00 0.00 0.00 4.95
1619 2005 2.370403 TGTGGGGAACTGGGGGTT 60.370 61.111 0.00 0.00 41.40 4.11
1620 2006 2.117423 GTGGGGAACTGGGGGTTG 59.883 66.667 0.00 0.00 38.41 3.77
1621 2007 2.038221 TGGGGAACTGGGGGTTGA 60.038 61.111 0.00 0.00 38.41 3.18
1622 2008 2.439245 GGGGAACTGGGGGTTGAC 59.561 66.667 0.00 0.00 38.41 3.18
1623 2009 2.160853 GGGGAACTGGGGGTTGACT 61.161 63.158 0.00 0.00 38.41 3.41
1624 2010 1.379146 GGGAACTGGGGGTTGACTC 59.621 63.158 0.00 0.00 38.41 3.36
1625 2011 1.134438 GGGAACTGGGGGTTGACTCT 61.134 60.000 0.00 0.00 38.41 3.24
1626 2012 0.771755 GGAACTGGGGGTTGACTCTT 59.228 55.000 0.00 0.00 38.41 2.85
1627 2013 1.545651 GGAACTGGGGGTTGACTCTTG 60.546 57.143 0.00 0.00 38.41 3.02
1628 2014 1.420138 GAACTGGGGGTTGACTCTTGA 59.580 52.381 0.00 0.00 38.41 3.02
1629 2015 0.765510 ACTGGGGGTTGACTCTTGAC 59.234 55.000 0.00 0.00 0.00 3.18
1630 2016 1.059913 CTGGGGGTTGACTCTTGACT 58.940 55.000 0.00 0.00 0.00 3.41
1631 2017 1.421646 CTGGGGGTTGACTCTTGACTT 59.578 52.381 0.00 0.00 0.00 3.01
1632 2018 1.850345 TGGGGGTTGACTCTTGACTTT 59.150 47.619 0.00 0.00 0.00 2.66
1633 2019 2.243736 TGGGGGTTGACTCTTGACTTTT 59.756 45.455 0.00 0.00 0.00 2.27
1634 2020 3.460340 TGGGGGTTGACTCTTGACTTTTA 59.540 43.478 0.00 0.00 0.00 1.52
1635 2021 4.079672 TGGGGGTTGACTCTTGACTTTTAA 60.080 41.667 0.00 0.00 0.00 1.52
1636 2022 4.519350 GGGGGTTGACTCTTGACTTTTAAG 59.481 45.833 0.00 0.00 0.00 1.85
1637 2023 5.131067 GGGGTTGACTCTTGACTTTTAAGT 58.869 41.667 0.00 0.00 43.16 2.24
1638 2024 5.593095 GGGGTTGACTCTTGACTTTTAAGTT 59.407 40.000 0.00 0.00 39.88 2.66
1639 2025 6.238676 GGGGTTGACTCTTGACTTTTAAGTTC 60.239 42.308 0.00 0.00 39.88 3.01
1640 2026 6.419771 GGTTGACTCTTGACTTTTAAGTTCG 58.580 40.000 0.00 0.00 39.88 3.95
1641 2027 6.036844 GGTTGACTCTTGACTTTTAAGTTCGT 59.963 38.462 0.00 0.00 39.88 3.85
1642 2028 7.413767 GGTTGACTCTTGACTTTTAAGTTCGTT 60.414 37.037 0.00 0.00 39.88 3.85
1643 2029 7.605410 TGACTCTTGACTTTTAAGTTCGTTT 57.395 32.000 0.00 0.00 39.88 3.60
1644 2030 7.681903 TGACTCTTGACTTTTAAGTTCGTTTC 58.318 34.615 0.00 0.00 39.88 2.78
1645 2031 7.332430 TGACTCTTGACTTTTAAGTTCGTTTCA 59.668 33.333 0.00 0.00 39.88 2.69
1646 2032 7.685594 ACTCTTGACTTTTAAGTTCGTTTCAG 58.314 34.615 0.00 0.00 39.88 3.02
1647 2033 7.333672 ACTCTTGACTTTTAAGTTCGTTTCAGT 59.666 33.333 0.00 0.00 39.88 3.41
1648 2034 7.461107 TCTTGACTTTTAAGTTCGTTTCAGTG 58.539 34.615 0.00 0.00 39.88 3.66
1649 2035 6.730960 TGACTTTTAAGTTCGTTTCAGTGT 57.269 33.333 0.00 0.00 39.88 3.55
1650 2036 7.830940 TGACTTTTAAGTTCGTTTCAGTGTA 57.169 32.000 0.00 0.00 39.88 2.90
1651 2037 8.254178 TGACTTTTAAGTTCGTTTCAGTGTAA 57.746 30.769 0.00 0.00 39.88 2.41
1652 2038 8.885722 TGACTTTTAAGTTCGTTTCAGTGTAAT 58.114 29.630 0.00 0.00 39.88 1.89
1653 2039 9.712359 GACTTTTAAGTTCGTTTCAGTGTAATT 57.288 29.630 0.00 0.00 39.88 1.40
1668 2054 7.959733 TCAGTGTAATTTATCTAACAAGTGCG 58.040 34.615 0.00 0.00 0.00 5.34
1669 2055 7.815549 TCAGTGTAATTTATCTAACAAGTGCGA 59.184 33.333 0.00 0.00 0.00 5.10
1670 2056 7.898309 CAGTGTAATTTATCTAACAAGTGCGAC 59.102 37.037 0.00 0.00 0.00 5.19
1671 2057 7.064253 AGTGTAATTTATCTAACAAGTGCGACC 59.936 37.037 0.00 0.00 0.00 4.79
1672 2058 6.874664 TGTAATTTATCTAACAAGTGCGACCA 59.125 34.615 0.00 0.00 0.00 4.02
1673 2059 6.422776 AATTTATCTAACAAGTGCGACCAG 57.577 37.500 0.00 0.00 0.00 4.00
1674 2060 4.794278 TTATCTAACAAGTGCGACCAGA 57.206 40.909 0.00 0.00 0.00 3.86
1675 2061 2.433868 TCTAACAAGTGCGACCAGAC 57.566 50.000 0.00 0.00 0.00 3.51
1676 2062 1.684450 TCTAACAAGTGCGACCAGACA 59.316 47.619 0.00 0.00 0.00 3.41
1677 2063 2.101750 TCTAACAAGTGCGACCAGACAA 59.898 45.455 0.00 0.00 0.00 3.18
1678 2064 1.745232 AACAAGTGCGACCAGACAAA 58.255 45.000 0.00 0.00 0.00 2.83
1679 2065 1.967319 ACAAGTGCGACCAGACAAAT 58.033 45.000 0.00 0.00 0.00 2.32
1680 2066 2.297701 ACAAGTGCGACCAGACAAATT 58.702 42.857 0.00 0.00 0.00 1.82
1681 2067 2.033299 ACAAGTGCGACCAGACAAATTG 59.967 45.455 0.00 0.00 0.00 2.32
1682 2068 2.254546 AGTGCGACCAGACAAATTGA 57.745 45.000 0.00 0.00 0.00 2.57
1683 2069 1.873591 AGTGCGACCAGACAAATTGAC 59.126 47.619 0.00 0.00 0.00 3.18
1684 2070 1.601903 GTGCGACCAGACAAATTGACA 59.398 47.619 0.00 0.00 0.00 3.58
1685 2071 2.226437 GTGCGACCAGACAAATTGACAT 59.774 45.455 0.00 0.00 0.00 3.06
1686 2072 2.884012 TGCGACCAGACAAATTGACATT 59.116 40.909 0.00 0.00 0.00 2.71
1687 2073 3.058293 TGCGACCAGACAAATTGACATTC 60.058 43.478 0.00 0.00 0.00 2.67
1688 2074 3.189287 GCGACCAGACAAATTGACATTCT 59.811 43.478 0.00 0.00 0.00 2.40
1689 2075 4.391830 GCGACCAGACAAATTGACATTCTA 59.608 41.667 0.00 0.00 0.00 2.10
1690 2076 5.106712 GCGACCAGACAAATTGACATTCTAA 60.107 40.000 0.00 0.00 0.00 2.10
1691 2077 6.567701 GCGACCAGACAAATTGACATTCTAAA 60.568 38.462 0.00 0.00 0.00 1.85
1692 2078 7.530010 CGACCAGACAAATTGACATTCTAAAT 58.470 34.615 0.00 0.00 0.00 1.40
1693 2079 7.482743 CGACCAGACAAATTGACATTCTAAATG 59.517 37.037 0.00 0.00 0.00 2.32
1694 2080 7.605449 ACCAGACAAATTGACATTCTAAATGG 58.395 34.615 0.00 0.00 0.00 3.16
1695 2081 7.451255 ACCAGACAAATTGACATTCTAAATGGA 59.549 33.333 0.00 0.00 0.00 3.41
1696 2082 8.472413 CCAGACAAATTGACATTCTAAATGGAT 58.528 33.333 0.00 0.00 0.00 3.41
1697 2083 9.865321 CAGACAAATTGACATTCTAAATGGATT 57.135 29.630 0.00 0.35 0.00 3.01
1698 2084 9.865321 AGACAAATTGACATTCTAAATGGATTG 57.135 29.630 0.00 4.85 0.00 2.67
1699 2085 9.643693 GACAAATTGACATTCTAAATGGATTGT 57.356 29.630 0.00 7.28 34.05 2.71
1704 2090 9.643693 ATTGACATTCTAAATGGATTGTTTGTC 57.356 29.630 4.82 0.00 32.32 3.18
1705 2091 8.175925 TGACATTCTAAATGGATTGTTTGTCA 57.824 30.769 4.82 0.00 32.32 3.58
1706 2092 8.081633 TGACATTCTAAATGGATTGTTTGTCAC 58.918 33.333 4.82 0.00 32.32 3.67
1707 2093 7.950512 ACATTCTAAATGGATTGTTTGTCACA 58.049 30.769 4.82 0.00 0.00 3.58
1722 2108 9.915629 TTGTTTGTCACAAGTAATAAGTTGTTT 57.084 25.926 0.00 0.00 45.08 2.83
1723 2109 9.915629 TGTTTGTCACAAGTAATAAGTTGTTTT 57.084 25.926 0.00 0.00 45.08 2.43
1891 2277 2.762887 TCGTCAAGCTCATCTTCATCCT 59.237 45.455 0.00 0.00 31.27 3.24
1998 2387 1.843851 ACTTGGGTCCTGTTGTCTCAA 59.156 47.619 0.00 0.00 0.00 3.02
2130 2628 9.231297 CAATTTCTACCTTGTTAGGAGAATTCA 57.769 33.333 8.44 0.00 45.05 2.57
2173 2671 2.763215 GGGAACTGGGGTCATGCA 59.237 61.111 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 157 6.238566 CGTTTAGGAGACGTTGGATCTGTATA 60.239 42.308 0.00 0.00 35.88 1.47
900 1071 3.237268 AGCCAAAAGGTGAATGGTGTA 57.763 42.857 0.00 0.00 36.57 2.90
910 1081 1.465172 GAGGGGGAAGCCAAAAGGT 59.535 57.895 0.00 0.00 0.00 3.50
913 1084 1.376249 AAGGGAGGGGGAAGCCAAAA 61.376 55.000 0.00 0.00 0.00 2.44
914 1085 1.782608 AAGGGAGGGGGAAGCCAAA 60.783 57.895 0.00 0.00 0.00 3.28
1138 1524 2.157668 CAGATCTGGACGGAAACAAACG 59.842 50.000 15.38 0.00 0.00 3.60
1149 1535 2.593346 AATCAGCGTCAGATCTGGAC 57.407 50.000 22.42 16.69 0.00 4.02
1150 1536 2.419159 CCAAATCAGCGTCAGATCTGGA 60.419 50.000 22.42 11.57 35.99 3.86
1151 1537 1.938577 CCAAATCAGCGTCAGATCTGG 59.061 52.381 22.42 8.67 28.10 3.86
1152 1538 1.329906 GCCAAATCAGCGTCAGATCTG 59.670 52.381 17.07 17.07 0.00 2.90
1153 1539 1.661341 GCCAAATCAGCGTCAGATCT 58.339 50.000 0.00 0.00 0.00 2.75
1162 1548 1.136147 CTCTGTGCGCCAAATCAGC 59.864 57.895 4.18 0.00 0.00 4.26
1163 1549 0.877071 AACTCTGTGCGCCAAATCAG 59.123 50.000 4.18 6.14 0.00 2.90
1164 1550 1.317613 AAACTCTGTGCGCCAAATCA 58.682 45.000 4.18 0.00 0.00 2.57
1165 1551 2.414161 GGTAAACTCTGTGCGCCAAATC 60.414 50.000 4.18 0.00 0.00 2.17
1166 1552 1.539827 GGTAAACTCTGTGCGCCAAAT 59.460 47.619 4.18 0.00 0.00 2.32
1167 1553 0.948678 GGTAAACTCTGTGCGCCAAA 59.051 50.000 4.18 0.00 0.00 3.28
1168 1554 0.179043 TGGTAAACTCTGTGCGCCAA 60.179 50.000 4.18 0.00 0.00 4.52
1169 1555 0.179043 TTGGTAAACTCTGTGCGCCA 60.179 50.000 4.18 0.90 0.00 5.69
1170 1556 0.517316 CTTGGTAAACTCTGTGCGCC 59.483 55.000 4.18 0.00 0.00 6.53
1171 1557 0.517316 CCTTGGTAAACTCTGTGCGC 59.483 55.000 0.00 0.00 0.00 6.09
1172 1558 1.531149 CACCTTGGTAAACTCTGTGCG 59.469 52.381 0.00 0.00 0.00 5.34
1173 1559 1.880027 CCACCTTGGTAAACTCTGTGC 59.120 52.381 0.00 0.00 31.35 4.57
1174 1560 1.880027 GCCACCTTGGTAAACTCTGTG 59.120 52.381 0.00 0.00 40.46 3.66
1175 1561 1.542547 CGCCACCTTGGTAAACTCTGT 60.543 52.381 0.00 0.00 40.46 3.41
1176 1562 1.156736 CGCCACCTTGGTAAACTCTG 58.843 55.000 0.00 0.00 40.46 3.35
1177 1563 0.036306 CCGCCACCTTGGTAAACTCT 59.964 55.000 0.00 0.00 40.46 3.24
1178 1564 1.583495 GCCGCCACCTTGGTAAACTC 61.583 60.000 0.00 0.00 40.46 3.01
1179 1565 1.602605 GCCGCCACCTTGGTAAACT 60.603 57.895 0.00 0.00 40.46 2.66
1180 1566 2.959372 GCCGCCACCTTGGTAAAC 59.041 61.111 0.00 0.00 40.46 2.01
1181 1567 2.670251 CGCCGCCACCTTGGTAAA 60.670 61.111 0.00 0.00 40.46 2.01
1201 1587 4.487412 ACGAACCCGATCGCCGTC 62.487 66.667 10.32 4.88 46.51 4.79
1202 1588 4.487412 GACGAACCCGATCGCCGT 62.487 66.667 10.32 15.19 46.51 5.68
1204 1590 4.487412 ACGACGAACCCGATCGCC 62.487 66.667 10.32 0.00 46.51 5.54
1205 1591 2.931713 ATGACGACGAACCCGATCGC 62.932 60.000 10.32 0.00 46.51 4.58
1207 1593 0.870307 CCATGACGACGAACCCGATC 60.870 60.000 0.00 0.00 39.50 3.69
1208 1594 1.141019 CCATGACGACGAACCCGAT 59.859 57.895 0.00 0.00 39.50 4.18
1209 1595 2.569657 CCATGACGACGAACCCGA 59.430 61.111 0.00 0.00 39.50 5.14
1210 1596 2.508439 CCCATGACGACGAACCCG 60.508 66.667 0.00 0.00 42.50 5.28
1211 1597 2.125269 CCCCATGACGACGAACCC 60.125 66.667 0.00 0.00 0.00 4.11
1212 1598 1.004200 AACCCCATGACGACGAACC 60.004 57.895 0.00 0.00 0.00 3.62
1213 1599 1.349259 CGAACCCCATGACGACGAAC 61.349 60.000 0.00 0.00 0.00 3.95
1214 1600 1.080366 CGAACCCCATGACGACGAA 60.080 57.895 0.00 0.00 0.00 3.85
1215 1601 2.203972 GACGAACCCCATGACGACGA 62.204 60.000 0.00 0.00 0.00 4.20
1216 1602 1.804326 GACGAACCCCATGACGACG 60.804 63.158 0.00 0.00 0.00 5.12
1217 1603 1.804326 CGACGAACCCCATGACGAC 60.804 63.158 0.00 0.00 0.00 4.34
1218 1604 2.569657 CGACGAACCCCATGACGA 59.430 61.111 0.00 0.00 0.00 4.20
1219 1605 2.508439 CCGACGAACCCCATGACG 60.508 66.667 0.00 0.00 0.00 4.35
1220 1606 2.798148 AAGCCGACGAACCCCATGAC 62.798 60.000 0.00 0.00 0.00 3.06
1221 1607 2.515996 GAAGCCGACGAACCCCATGA 62.516 60.000 0.00 0.00 0.00 3.07
1222 1608 2.046314 AAGCCGACGAACCCCATG 60.046 61.111 0.00 0.00 0.00 3.66
1223 1609 1.838073 AAGAAGCCGACGAACCCCAT 61.838 55.000 0.00 0.00 0.00 4.00
1224 1610 2.444700 GAAGAAGCCGACGAACCCCA 62.445 60.000 0.00 0.00 0.00 4.96
1225 1611 1.740664 GAAGAAGCCGACGAACCCC 60.741 63.158 0.00 0.00 0.00 4.95
1226 1612 2.092882 CGAAGAAGCCGACGAACCC 61.093 63.158 0.00 0.00 0.00 4.11
1227 1613 1.342796 GACGAAGAAGCCGACGAACC 61.343 60.000 0.00 0.00 0.00 3.62
1228 1614 0.662374 TGACGAAGAAGCCGACGAAC 60.662 55.000 0.00 0.00 0.00 3.95
1229 1615 0.031043 TTGACGAAGAAGCCGACGAA 59.969 50.000 0.00 0.00 0.00 3.85
1230 1616 0.386858 CTTGACGAAGAAGCCGACGA 60.387 55.000 0.00 0.00 0.00 4.20
1231 1617 1.945776 GCTTGACGAAGAAGCCGACG 61.946 60.000 0.00 0.00 40.03 5.12
1232 1618 0.667792 AGCTTGACGAAGAAGCCGAC 60.668 55.000 12.15 0.00 45.89 4.79
1233 1619 0.388649 GAGCTTGACGAAGAAGCCGA 60.389 55.000 12.15 0.00 45.89 5.54
1234 1620 0.667487 TGAGCTTGACGAAGAAGCCG 60.667 55.000 12.15 0.00 45.89 5.52
1235 1621 1.663135 GATGAGCTTGACGAAGAAGCC 59.337 52.381 12.15 6.72 45.89 4.35
1236 1622 2.615869 AGATGAGCTTGACGAAGAAGC 58.384 47.619 8.98 8.98 45.22 3.86
1237 1623 4.240888 TGAAGATGAGCTTGACGAAGAAG 58.759 43.478 0.00 0.00 36.83 2.85
1238 1624 4.257267 TGAAGATGAGCTTGACGAAGAA 57.743 40.909 0.00 0.00 36.83 2.52
1239 1625 3.942130 TGAAGATGAGCTTGACGAAGA 57.058 42.857 0.00 0.00 36.83 2.87
1240 1626 3.555139 GGATGAAGATGAGCTTGACGAAG 59.445 47.826 0.00 0.00 36.83 3.79
1241 1627 3.525537 GGATGAAGATGAGCTTGACGAA 58.474 45.455 0.00 0.00 36.83 3.85
1242 1628 2.159043 GGGATGAAGATGAGCTTGACGA 60.159 50.000 0.00 0.00 36.83 4.20
1243 1629 2.208431 GGGATGAAGATGAGCTTGACG 58.792 52.381 0.00 0.00 36.83 4.35
1244 1630 2.092753 TGGGGATGAAGATGAGCTTGAC 60.093 50.000 0.00 0.00 36.83 3.18
1245 1631 2.199208 TGGGGATGAAGATGAGCTTGA 58.801 47.619 0.00 0.00 36.83 3.02
1246 1632 2.723322 TGGGGATGAAGATGAGCTTG 57.277 50.000 0.00 0.00 36.83 4.01
1247 1633 2.781757 TGATGGGGATGAAGATGAGCTT 59.218 45.455 0.00 0.00 40.25 3.74
1248 1634 2.415624 TGATGGGGATGAAGATGAGCT 58.584 47.619 0.00 0.00 0.00 4.09
1249 1635 2.883386 GTTGATGGGGATGAAGATGAGC 59.117 50.000 0.00 0.00 0.00 4.26
1250 1636 4.160642 TGTTGATGGGGATGAAGATGAG 57.839 45.455 0.00 0.00 0.00 2.90
1251 1637 4.263860 TGTTGTTGATGGGGATGAAGATGA 60.264 41.667 0.00 0.00 0.00 2.92
1252 1638 4.018490 TGTTGTTGATGGGGATGAAGATG 58.982 43.478 0.00 0.00 0.00 2.90
1253 1639 4.320546 TGTTGTTGATGGGGATGAAGAT 57.679 40.909 0.00 0.00 0.00 2.40
1254 1640 3.805066 TGTTGTTGATGGGGATGAAGA 57.195 42.857 0.00 0.00 0.00 2.87
1255 1641 4.018490 TGATGTTGTTGATGGGGATGAAG 58.982 43.478 0.00 0.00 0.00 3.02
1256 1642 4.044946 TGATGTTGTTGATGGGGATGAA 57.955 40.909 0.00 0.00 0.00 2.57
1257 1643 3.735720 TGATGTTGTTGATGGGGATGA 57.264 42.857 0.00 0.00 0.00 2.92
1258 1644 3.004002 CGATGATGTTGTTGATGGGGATG 59.996 47.826 0.00 0.00 0.00 3.51
1259 1645 3.216800 CGATGATGTTGTTGATGGGGAT 58.783 45.455 0.00 0.00 0.00 3.85
1260 1646 2.026356 ACGATGATGTTGTTGATGGGGA 60.026 45.455 0.00 0.00 0.00 4.81
1261 1647 2.355756 GACGATGATGTTGTTGATGGGG 59.644 50.000 0.00 0.00 0.00 4.96
1262 1648 2.030823 CGACGATGATGTTGTTGATGGG 59.969 50.000 0.00 0.00 0.00 4.00
1263 1649 2.030823 CCGACGATGATGTTGTTGATGG 59.969 50.000 0.00 0.00 0.00 3.51
1264 1650 2.537529 GCCGACGATGATGTTGTTGATG 60.538 50.000 0.00 0.00 0.00 3.07
1265 1651 1.665679 GCCGACGATGATGTTGTTGAT 59.334 47.619 0.00 0.00 0.00 2.57
1266 1652 1.075542 GCCGACGATGATGTTGTTGA 58.924 50.000 0.00 0.00 0.00 3.18
1267 1653 1.061131 GAGCCGACGATGATGTTGTTG 59.939 52.381 0.00 0.00 0.00 3.33
1268 1654 1.066858 AGAGCCGACGATGATGTTGTT 60.067 47.619 0.00 0.00 0.00 2.83
1269 1655 0.532573 AGAGCCGACGATGATGTTGT 59.467 50.000 0.00 0.00 0.00 3.32
1270 1656 0.926155 CAGAGCCGACGATGATGTTG 59.074 55.000 0.00 0.00 0.00 3.33
1271 1657 0.179100 CCAGAGCCGACGATGATGTT 60.179 55.000 0.00 0.00 0.00 2.71
1272 1658 1.439228 CCAGAGCCGACGATGATGT 59.561 57.895 0.00 0.00 0.00 3.06
1273 1659 1.953138 GCCAGAGCCGACGATGATG 60.953 63.158 0.00 0.00 0.00 3.07
1274 1660 0.823769 TAGCCAGAGCCGACGATGAT 60.824 55.000 0.00 0.00 41.25 2.45
1275 1661 1.448119 CTAGCCAGAGCCGACGATGA 61.448 60.000 0.00 0.00 41.25 2.92
1276 1662 1.007964 CTAGCCAGAGCCGACGATG 60.008 63.158 0.00 0.00 41.25 3.84
1277 1663 2.196925 CCTAGCCAGAGCCGACGAT 61.197 63.158 0.00 0.00 41.25 3.73
1278 1664 2.829003 CCTAGCCAGAGCCGACGA 60.829 66.667 0.00 0.00 41.25 4.20
1279 1665 3.141488 ACCTAGCCAGAGCCGACG 61.141 66.667 0.00 0.00 41.25 5.12
1280 1666 2.496817 CACCTAGCCAGAGCCGAC 59.503 66.667 0.00 0.00 41.25 4.79
1281 1667 3.461773 GCACCTAGCCAGAGCCGA 61.462 66.667 0.00 0.00 41.25 5.54
1282 1668 4.880537 CGCACCTAGCCAGAGCCG 62.881 72.222 0.00 0.00 41.25 5.52
1283 1669 3.019003 TTCGCACCTAGCCAGAGCC 62.019 63.158 0.00 0.00 41.25 4.70
1284 1670 1.811679 GTTCGCACCTAGCCAGAGC 60.812 63.158 0.00 0.00 41.38 4.09
1285 1671 1.517257 CGTTCGCACCTAGCCAGAG 60.517 63.158 0.00 0.00 41.38 3.35
1286 1672 2.571757 CGTTCGCACCTAGCCAGA 59.428 61.111 0.00 0.00 41.38 3.86
1287 1673 3.188786 GCGTTCGCACCTAGCCAG 61.189 66.667 12.33 0.00 41.38 4.85
1290 1676 3.542742 GACGCGTTCGCACCTAGC 61.543 66.667 15.53 0.00 39.84 3.42
1291 1677 1.868251 GAGACGCGTTCGCACCTAG 60.868 63.158 15.53 3.09 39.84 3.02
1292 1678 2.177531 GAGACGCGTTCGCACCTA 59.822 61.111 15.53 0.00 39.84 3.08
1293 1679 4.719369 GGAGACGCGTTCGCACCT 62.719 66.667 15.53 3.91 39.84 4.00
1294 1680 4.719369 AGGAGACGCGTTCGCACC 62.719 66.667 15.53 9.16 39.84 5.01
1295 1681 3.173240 GAGGAGACGCGTTCGCAC 61.173 66.667 15.53 0.00 39.84 5.34
1296 1682 4.415332 GGAGGAGACGCGTTCGCA 62.415 66.667 15.53 0.00 39.84 5.10
1298 1684 2.968330 GATCGGAGGAGACGCGTTCG 62.968 65.000 15.53 11.07 42.43 3.95
1299 1685 1.298488 GATCGGAGGAGACGCGTTC 60.298 63.158 15.53 12.91 0.00 3.95
1300 1686 2.772691 GGATCGGAGGAGACGCGTT 61.773 63.158 15.53 2.89 0.00 4.84
1301 1687 3.210528 GGATCGGAGGAGACGCGT 61.211 66.667 13.85 13.85 0.00 6.01
1302 1688 3.967335 GGGATCGGAGGAGACGCG 61.967 72.222 3.53 3.53 0.00 6.01
1303 1689 3.967335 CGGGATCGGAGGAGACGC 61.967 72.222 0.00 0.00 0.00 5.19
1304 1690 2.516460 ACGGGATCGGAGGAGACG 60.516 66.667 0.00 0.00 41.39 4.18
1305 1691 1.152922 AGACGGGATCGGAGGAGAC 60.153 63.158 0.00 0.00 41.39 3.36
1306 1692 1.148723 GAGACGGGATCGGAGGAGA 59.851 63.158 0.00 0.00 41.39 3.71
1307 1693 1.899534 GGAGACGGGATCGGAGGAG 60.900 68.421 0.00 0.00 41.39 3.69
1308 1694 2.195139 GGAGACGGGATCGGAGGA 59.805 66.667 0.00 0.00 41.39 3.71
1309 1695 2.913060 GGGAGACGGGATCGGAGG 60.913 72.222 0.00 0.00 41.39 4.30
1310 1696 1.899534 GAGGGAGACGGGATCGGAG 60.900 68.421 0.00 0.00 41.39 4.63
1311 1697 1.934459 AAGAGGGAGACGGGATCGGA 61.934 60.000 0.00 0.00 41.39 4.55
1312 1698 1.455959 AAGAGGGAGACGGGATCGG 60.456 63.158 0.00 0.00 41.39 4.18
1313 1699 1.736586 CAAGAGGGAGACGGGATCG 59.263 63.158 0.00 0.00 43.02 3.69
1314 1700 1.045911 AGCAAGAGGGAGACGGGATC 61.046 60.000 0.00 0.00 0.00 3.36
1315 1701 0.618968 AAGCAAGAGGGAGACGGGAT 60.619 55.000 0.00 0.00 0.00 3.85
1316 1702 1.229209 AAGCAAGAGGGAGACGGGA 60.229 57.895 0.00 0.00 0.00 5.14
1317 1703 1.078848 CAAGCAAGAGGGAGACGGG 60.079 63.158 0.00 0.00 0.00 5.28
1318 1704 1.743252 GCAAGCAAGAGGGAGACGG 60.743 63.158 0.00 0.00 0.00 4.79
1319 1705 1.004560 TGCAAGCAAGAGGGAGACG 60.005 57.895 0.00 0.00 0.00 4.18
1320 1706 1.294659 CGTGCAAGCAAGAGGGAGAC 61.295 60.000 1.65 0.00 0.00 3.36
1321 1707 1.004560 CGTGCAAGCAAGAGGGAGA 60.005 57.895 1.65 0.00 0.00 3.71
1322 1708 2.037136 CCGTGCAAGCAAGAGGGAG 61.037 63.158 9.53 0.00 0.00 4.30
1323 1709 2.032528 CCGTGCAAGCAAGAGGGA 59.967 61.111 9.53 0.00 0.00 4.20
1324 1710 1.455383 AAACCGTGCAAGCAAGAGGG 61.455 55.000 9.53 5.52 0.00 4.30
1325 1711 1.197721 CTAAACCGTGCAAGCAAGAGG 59.802 52.381 9.53 9.70 0.00 3.69
1326 1712 1.873591 ACTAAACCGTGCAAGCAAGAG 59.126 47.619 9.53 1.78 0.00 2.85
1327 1713 1.961793 ACTAAACCGTGCAAGCAAGA 58.038 45.000 9.53 0.00 0.00 3.02
1328 1714 2.774439 AACTAAACCGTGCAAGCAAG 57.226 45.000 0.00 0.00 0.00 4.01
1329 1715 3.249080 GTCTAACTAAACCGTGCAAGCAA 59.751 43.478 0.00 0.00 0.00 3.91
1330 1716 2.803956 GTCTAACTAAACCGTGCAAGCA 59.196 45.455 0.00 0.00 0.00 3.91
1331 1717 3.064931 AGTCTAACTAAACCGTGCAAGC 58.935 45.455 0.00 0.00 0.00 4.01
1332 1718 4.084013 CCAAGTCTAACTAAACCGTGCAAG 60.084 45.833 0.00 0.00 0.00 4.01
1333 1719 3.810941 CCAAGTCTAACTAAACCGTGCAA 59.189 43.478 0.00 0.00 0.00 4.08
1334 1720 3.181463 ACCAAGTCTAACTAAACCGTGCA 60.181 43.478 0.00 0.00 0.00 4.57
1335 1721 3.396560 ACCAAGTCTAACTAAACCGTGC 58.603 45.455 0.00 0.00 0.00 5.34
1336 1722 4.450080 GGAACCAAGTCTAACTAAACCGTG 59.550 45.833 0.00 0.00 0.00 4.94
1337 1723 4.346127 AGGAACCAAGTCTAACTAAACCGT 59.654 41.667 0.00 0.00 0.00 4.83
1338 1724 4.689345 CAGGAACCAAGTCTAACTAAACCG 59.311 45.833 0.00 0.00 0.00 4.44
1339 1725 5.618236 ACAGGAACCAAGTCTAACTAAACC 58.382 41.667 0.00 0.00 0.00 3.27
1340 1726 6.541278 ACAACAGGAACCAAGTCTAACTAAAC 59.459 38.462 0.00 0.00 0.00 2.01
1341 1727 6.655930 ACAACAGGAACCAAGTCTAACTAAA 58.344 36.000 0.00 0.00 0.00 1.85
1342 1728 6.099269 AGACAACAGGAACCAAGTCTAACTAA 59.901 38.462 0.00 0.00 34.83 2.24
1343 1729 5.601313 AGACAACAGGAACCAAGTCTAACTA 59.399 40.000 0.00 0.00 34.83 2.24
1344 1730 4.409247 AGACAACAGGAACCAAGTCTAACT 59.591 41.667 0.00 0.00 34.83 2.24
1345 1731 4.704965 AGACAACAGGAACCAAGTCTAAC 58.295 43.478 0.00 0.00 34.83 2.34
1346 1732 4.500887 CGAGACAACAGGAACCAAGTCTAA 60.501 45.833 0.00 0.00 36.56 2.10
1347 1733 3.005472 CGAGACAACAGGAACCAAGTCTA 59.995 47.826 0.00 0.00 36.56 2.59
1348 1734 2.224066 CGAGACAACAGGAACCAAGTCT 60.224 50.000 0.00 0.00 38.89 3.24
1349 1735 2.135933 CGAGACAACAGGAACCAAGTC 58.864 52.381 0.00 0.00 0.00 3.01
1350 1736 1.485066 ACGAGACAACAGGAACCAAGT 59.515 47.619 0.00 0.00 0.00 3.16
1351 1737 1.867233 CACGAGACAACAGGAACCAAG 59.133 52.381 0.00 0.00 0.00 3.61
1352 1738 1.948104 CACGAGACAACAGGAACCAA 58.052 50.000 0.00 0.00 0.00 3.67
1353 1739 0.531974 GCACGAGACAACAGGAACCA 60.532 55.000 0.00 0.00 0.00 3.67
1354 1740 0.249911 AGCACGAGACAACAGGAACC 60.250 55.000 0.00 0.00 0.00 3.62
1355 1741 0.861837 CAGCACGAGACAACAGGAAC 59.138 55.000 0.00 0.00 0.00 3.62
1356 1742 0.464036 ACAGCACGAGACAACAGGAA 59.536 50.000 0.00 0.00 0.00 3.36
1357 1743 0.249447 CACAGCACGAGACAACAGGA 60.249 55.000 0.00 0.00 0.00 3.86
1358 1744 0.249447 TCACAGCACGAGACAACAGG 60.249 55.000 0.00 0.00 0.00 4.00
1359 1745 1.723542 GATCACAGCACGAGACAACAG 59.276 52.381 0.00 0.00 0.00 3.16
1360 1746 1.341209 AGATCACAGCACGAGACAACA 59.659 47.619 0.00 0.00 0.00 3.33
1361 1747 1.723542 CAGATCACAGCACGAGACAAC 59.276 52.381 0.00 0.00 0.00 3.32
1362 1748 1.341209 ACAGATCACAGCACGAGACAA 59.659 47.619 0.00 0.00 0.00 3.18
1363 1749 0.961753 ACAGATCACAGCACGAGACA 59.038 50.000 0.00 0.00 0.00 3.41
1364 1750 1.723542 CAACAGATCACAGCACGAGAC 59.276 52.381 0.00 0.00 0.00 3.36
1365 1751 1.337167 CCAACAGATCACAGCACGAGA 60.337 52.381 0.00 0.00 0.00 4.04
1366 1752 1.073964 CCAACAGATCACAGCACGAG 58.926 55.000 0.00 0.00 0.00 4.18
1367 1753 0.678950 TCCAACAGATCACAGCACGA 59.321 50.000 0.00 0.00 0.00 4.35
1368 1754 1.730501 ATCCAACAGATCACAGCACG 58.269 50.000 0.00 0.00 0.00 5.34
1377 1763 0.615331 ACACCGCAGATCCAACAGAT 59.385 50.000 0.00 0.00 38.17 2.90
1378 1764 0.320683 CACACCGCAGATCCAACAGA 60.321 55.000 0.00 0.00 0.00 3.41
1379 1765 1.915614 GCACACCGCAGATCCAACAG 61.916 60.000 0.00 0.00 41.79 3.16
1380 1766 1.965930 GCACACCGCAGATCCAACA 60.966 57.895 0.00 0.00 41.79 3.33
1381 1767 2.870372 GCACACCGCAGATCCAAC 59.130 61.111 0.00 0.00 41.79 3.77
1382 1768 2.741985 CGCACACCGCAGATCCAA 60.742 61.111 0.00 0.00 42.60 3.53
1401 1787 3.623934 AAAATCCCTGGGGGCAGGC 62.624 63.158 14.00 0.00 43.94 4.85
1402 1788 1.686800 CAAAATCCCTGGGGGCAGG 60.687 63.158 14.00 0.00 43.94 4.85
1403 1789 2.361567 GCAAAATCCCTGGGGGCAG 61.362 63.158 14.00 0.83 43.94 4.85
1404 1790 2.284552 GCAAAATCCCTGGGGGCA 60.285 61.111 14.00 0.00 43.94 5.36
1405 1791 3.460868 CGCAAAATCCCTGGGGGC 61.461 66.667 14.00 8.36 43.94 5.80
1406 1792 2.759560 CCGCAAAATCCCTGGGGG 60.760 66.667 14.00 0.00 46.11 5.40
1407 1793 3.460868 GCCGCAAAATCCCTGGGG 61.461 66.667 14.00 2.42 46.82 4.96
1408 1794 2.362889 AGCCGCAAAATCCCTGGG 60.363 61.111 6.33 6.33 0.00 4.45
1409 1795 2.887360 CAGCCGCAAAATCCCTGG 59.113 61.111 0.00 0.00 0.00 4.45
1410 1796 2.182537 GCAGCCGCAAAATCCCTG 59.817 61.111 0.00 0.00 38.36 4.45
1427 1813 0.883833 AACTCAATTTCGCAGGCCTG 59.116 50.000 29.34 29.34 0.00 4.85
1428 1814 1.168714 GAACTCAATTTCGCAGGCCT 58.831 50.000 0.00 0.00 0.00 5.19
1429 1815 0.171231 GGAACTCAATTTCGCAGGCC 59.829 55.000 0.00 0.00 0.00 5.19
1430 1816 0.179189 CGGAACTCAATTTCGCAGGC 60.179 55.000 0.00 0.00 30.94 4.85
1431 1817 1.156736 ACGGAACTCAATTTCGCAGG 58.843 50.000 0.00 0.00 43.79 4.85
1432 1818 2.223144 TCAACGGAACTCAATTTCGCAG 59.777 45.455 0.00 0.00 43.79 5.18
1433 1819 2.032377 GTCAACGGAACTCAATTTCGCA 60.032 45.455 0.00 0.00 43.79 5.10
1434 1820 2.032377 TGTCAACGGAACTCAATTTCGC 60.032 45.455 0.00 0.00 43.79 4.70
1435 1821 3.870723 TGTCAACGGAACTCAATTTCG 57.129 42.857 0.00 0.00 45.62 3.46
1436 1822 4.846137 CGAATGTCAACGGAACTCAATTTC 59.154 41.667 0.00 0.00 0.00 2.17
1437 1823 4.783242 CGAATGTCAACGGAACTCAATTT 58.217 39.130 0.00 0.00 0.00 1.82
1438 1824 4.404507 CGAATGTCAACGGAACTCAATT 57.595 40.909 0.00 0.00 0.00 2.32
1448 1834 2.679355 TCAAAAGCCGAATGTCAACG 57.321 45.000 0.00 0.00 0.00 4.10
1449 1835 6.092748 ACATATTCAAAAGCCGAATGTCAAC 58.907 36.000 0.00 0.00 34.89 3.18
1450 1836 6.266168 ACATATTCAAAAGCCGAATGTCAA 57.734 33.333 0.00 0.00 34.89 3.18
1451 1837 5.895636 ACATATTCAAAAGCCGAATGTCA 57.104 34.783 0.00 0.00 34.89 3.58
1452 1838 5.516339 CCAACATATTCAAAAGCCGAATGTC 59.484 40.000 0.00 0.00 34.89 3.06
1453 1839 5.410067 CCAACATATTCAAAAGCCGAATGT 58.590 37.500 0.00 0.00 34.89 2.71
1454 1840 4.805192 CCCAACATATTCAAAAGCCGAATG 59.195 41.667 0.00 0.00 34.89 2.67
1455 1841 4.466015 ACCCAACATATTCAAAAGCCGAAT 59.534 37.500 0.00 0.00 36.97 3.34
1456 1842 3.829601 ACCCAACATATTCAAAAGCCGAA 59.170 39.130 0.00 0.00 0.00 4.30
1457 1843 3.426615 ACCCAACATATTCAAAAGCCGA 58.573 40.909 0.00 0.00 0.00 5.54
1458 1844 3.866883 ACCCAACATATTCAAAAGCCG 57.133 42.857 0.00 0.00 0.00 5.52
1459 1845 6.092122 GCTAAAACCCAACATATTCAAAAGCC 59.908 38.462 0.00 0.00 0.00 4.35
1460 1846 6.648725 TGCTAAAACCCAACATATTCAAAAGC 59.351 34.615 0.00 0.00 0.00 3.51
1461 1847 7.655328 TGTGCTAAAACCCAACATATTCAAAAG 59.345 33.333 0.00 0.00 0.00 2.27
1462 1848 7.500992 TGTGCTAAAACCCAACATATTCAAAA 58.499 30.769 0.00 0.00 0.00 2.44
1463 1849 7.055667 TGTGCTAAAACCCAACATATTCAAA 57.944 32.000 0.00 0.00 0.00 2.69
1464 1850 6.656632 TGTGCTAAAACCCAACATATTCAA 57.343 33.333 0.00 0.00 0.00 2.69
1465 1851 6.663093 AGATGTGCTAAAACCCAACATATTCA 59.337 34.615 0.00 0.00 0.00 2.57
1466 1852 7.100458 AGATGTGCTAAAACCCAACATATTC 57.900 36.000 0.00 0.00 0.00 1.75
1467 1853 7.397192 AGAAGATGTGCTAAAACCCAACATATT 59.603 33.333 0.00 0.00 0.00 1.28
1468 1854 6.891908 AGAAGATGTGCTAAAACCCAACATAT 59.108 34.615 0.00 0.00 0.00 1.78
1469 1855 6.245408 AGAAGATGTGCTAAAACCCAACATA 58.755 36.000 0.00 0.00 0.00 2.29
1470 1856 5.079643 AGAAGATGTGCTAAAACCCAACAT 58.920 37.500 0.00 0.00 0.00 2.71
1471 1857 4.469657 AGAAGATGTGCTAAAACCCAACA 58.530 39.130 0.00 0.00 0.00 3.33
1472 1858 5.453567 AAGAAGATGTGCTAAAACCCAAC 57.546 39.130 0.00 0.00 0.00 3.77
1473 1859 5.710099 CCTAAGAAGATGTGCTAAAACCCAA 59.290 40.000 0.00 0.00 0.00 4.12
1474 1860 5.013704 TCCTAAGAAGATGTGCTAAAACCCA 59.986 40.000 0.00 0.00 0.00 4.51
1475 1861 5.497474 TCCTAAGAAGATGTGCTAAAACCC 58.503 41.667 0.00 0.00 0.00 4.11
1476 1862 7.448748 TTTCCTAAGAAGATGTGCTAAAACC 57.551 36.000 0.00 0.00 32.35 3.27
1477 1863 9.561270 GAATTTCCTAAGAAGATGTGCTAAAAC 57.439 33.333 0.00 0.00 32.35 2.43
1478 1864 8.739972 GGAATTTCCTAAGAAGATGTGCTAAAA 58.260 33.333 8.25 0.00 32.53 1.52
1479 1865 8.281212 GGAATTTCCTAAGAAGATGTGCTAAA 57.719 34.615 8.25 0.00 32.53 1.85
1480 1866 7.865706 GGAATTTCCTAAGAAGATGTGCTAA 57.134 36.000 8.25 0.00 32.53 3.09
1527 1913 9.214962 AGCAGGATCTACTAAAACCTAACTTAT 57.785 33.333 0.00 0.00 0.00 1.73
1528 1914 8.605325 AGCAGGATCTACTAAAACCTAACTTA 57.395 34.615 0.00 0.00 0.00 2.24
1529 1915 7.497773 AGCAGGATCTACTAAAACCTAACTT 57.502 36.000 0.00 0.00 0.00 2.66
1530 1916 8.605325 TTAGCAGGATCTACTAAAACCTAACT 57.395 34.615 0.00 0.00 0.00 2.24
1531 1917 9.833917 AATTAGCAGGATCTACTAAAACCTAAC 57.166 33.333 0.00 0.00 30.23 2.34
1534 1920 7.993758 GGAAATTAGCAGGATCTACTAAAACCT 59.006 37.037 0.00 0.00 30.23 3.50
1535 1921 7.993758 AGGAAATTAGCAGGATCTACTAAAACC 59.006 37.037 0.00 4.66 30.23 3.27
1536 1922 8.966069 AGGAAATTAGCAGGATCTACTAAAAC 57.034 34.615 0.00 0.00 30.23 2.43
1538 1924 9.435570 ACTAGGAAATTAGCAGGATCTACTAAA 57.564 33.333 0.00 0.00 30.23 1.85
1539 1925 9.435570 AACTAGGAAATTAGCAGGATCTACTAA 57.564 33.333 0.00 0.00 0.00 2.24
1540 1926 9.435570 AAACTAGGAAATTAGCAGGATCTACTA 57.564 33.333 0.00 0.00 0.00 1.82
1541 1927 7.922699 AACTAGGAAATTAGCAGGATCTACT 57.077 36.000 0.00 0.00 0.00 2.57
1542 1928 7.988028 ACAAACTAGGAAATTAGCAGGATCTAC 59.012 37.037 0.00 0.00 0.00 2.59
1543 1929 8.090788 ACAAACTAGGAAATTAGCAGGATCTA 57.909 34.615 0.00 0.00 0.00 1.98
1544 1930 6.963322 ACAAACTAGGAAATTAGCAGGATCT 58.037 36.000 0.00 0.00 0.00 2.75
1545 1931 7.631717 AACAAACTAGGAAATTAGCAGGATC 57.368 36.000 0.00 0.00 0.00 3.36
1546 1932 7.775561 CCTAACAAACTAGGAAATTAGCAGGAT 59.224 37.037 0.00 0.00 41.02 3.24
1547 1933 7.037873 TCCTAACAAACTAGGAAATTAGCAGGA 60.038 37.037 0.00 0.00 43.70 3.86
1548 1934 7.110155 TCCTAACAAACTAGGAAATTAGCAGG 58.890 38.462 0.00 0.00 43.70 4.85
1549 1935 8.041323 TCTCCTAACAAACTAGGAAATTAGCAG 58.959 37.037 0.00 0.00 45.50 4.24
1550 1936 7.913789 TCTCCTAACAAACTAGGAAATTAGCA 58.086 34.615 0.00 0.00 45.50 3.49
1551 1937 8.788325 TTCTCCTAACAAACTAGGAAATTAGC 57.212 34.615 0.00 0.00 45.50 3.09
1554 1940 9.025041 CCAATTCTCCTAACAAACTAGGAAATT 57.975 33.333 0.00 7.16 45.50 1.82
1555 1941 7.615757 CCCAATTCTCCTAACAAACTAGGAAAT 59.384 37.037 0.00 2.52 45.50 2.17
1556 1942 6.946009 CCCAATTCTCCTAACAAACTAGGAAA 59.054 38.462 0.00 0.61 45.50 3.13
1557 1943 6.273730 TCCCAATTCTCCTAACAAACTAGGAA 59.726 38.462 0.00 0.00 45.50 3.36
1558 1944 5.788533 TCCCAATTCTCCTAACAAACTAGGA 59.211 40.000 0.00 0.00 44.32 2.94
1559 1945 6.062258 TCCCAATTCTCCTAACAAACTAGG 57.938 41.667 0.00 0.00 40.03 3.02
1560 1946 7.338710 TCATCCCAATTCTCCTAACAAACTAG 58.661 38.462 0.00 0.00 0.00 2.57
1561 1947 7.265599 TCATCCCAATTCTCCTAACAAACTA 57.734 36.000 0.00 0.00 0.00 2.24
1562 1948 6.139679 TCATCCCAATTCTCCTAACAAACT 57.860 37.500 0.00 0.00 0.00 2.66
1563 1949 6.834168 TTCATCCCAATTCTCCTAACAAAC 57.166 37.500 0.00 0.00 0.00 2.93
1564 1950 7.673504 TGAATTCATCCCAATTCTCCTAACAAA 59.326 33.333 3.38 0.00 41.54 2.83
1565 1951 7.181361 TGAATTCATCCCAATTCTCCTAACAA 58.819 34.615 3.38 0.00 41.54 2.83
1566 1952 6.730447 TGAATTCATCCCAATTCTCCTAACA 58.270 36.000 3.38 0.00 41.54 2.41
1567 1953 6.264067 CCTGAATTCATCCCAATTCTCCTAAC 59.736 42.308 8.96 0.00 41.54 2.34
1568 1954 6.367983 CCTGAATTCATCCCAATTCTCCTAA 58.632 40.000 8.96 0.00 41.54 2.69
1569 1955 5.163055 CCCTGAATTCATCCCAATTCTCCTA 60.163 44.000 8.96 0.00 41.54 2.94
1570 1956 4.387211 CCCTGAATTCATCCCAATTCTCCT 60.387 45.833 8.96 0.00 41.54 3.69
1571 1957 3.893813 CCCTGAATTCATCCCAATTCTCC 59.106 47.826 8.96 0.00 41.54 3.71
1572 1958 4.540715 ACCCTGAATTCATCCCAATTCTC 58.459 43.478 8.96 0.00 41.54 2.87
1573 1959 4.614967 ACCCTGAATTCATCCCAATTCT 57.385 40.909 8.96 0.00 41.54 2.40
1574 1960 5.449553 ACTACCCTGAATTCATCCCAATTC 58.550 41.667 8.96 0.00 41.41 2.17
1575 1961 5.044179 TGACTACCCTGAATTCATCCCAATT 60.044 40.000 8.96 0.00 0.00 2.32
1576 1962 4.478317 TGACTACCCTGAATTCATCCCAAT 59.522 41.667 8.96 0.00 0.00 3.16
1577 1963 3.849574 TGACTACCCTGAATTCATCCCAA 59.150 43.478 8.96 0.00 0.00 4.12
1578 1964 3.455910 CTGACTACCCTGAATTCATCCCA 59.544 47.826 8.96 0.51 0.00 4.37
1579 1965 3.745797 GCTGACTACCCTGAATTCATCCC 60.746 52.174 8.96 0.00 0.00 3.85
1580 1966 3.135530 AGCTGACTACCCTGAATTCATCC 59.864 47.826 8.96 0.00 0.00 3.51
1581 1967 4.125703 CAGCTGACTACCCTGAATTCATC 58.874 47.826 8.42 3.05 0.00 2.92
1582 1968 3.521126 ACAGCTGACTACCCTGAATTCAT 59.479 43.478 23.35 0.00 0.00 2.57
1583 1969 2.906389 ACAGCTGACTACCCTGAATTCA 59.094 45.455 23.35 8.12 0.00 2.57
1584 1970 3.265791 CACAGCTGACTACCCTGAATTC 58.734 50.000 23.35 0.00 0.00 2.17
1585 1971 2.026822 CCACAGCTGACTACCCTGAATT 60.027 50.000 23.35 0.00 0.00 2.17
1586 1972 1.556911 CCACAGCTGACTACCCTGAAT 59.443 52.381 23.35 0.00 0.00 2.57
1587 1973 0.976641 CCACAGCTGACTACCCTGAA 59.023 55.000 23.35 0.00 0.00 3.02
1588 1974 0.904865 CCCACAGCTGACTACCCTGA 60.905 60.000 23.35 0.00 0.00 3.86
1589 1975 1.599047 CCCACAGCTGACTACCCTG 59.401 63.158 23.35 5.94 0.00 4.45
1590 1976 1.613630 CCCCACAGCTGACTACCCT 60.614 63.158 23.35 0.00 0.00 4.34
1591 1977 1.198759 TTCCCCACAGCTGACTACCC 61.199 60.000 23.35 0.00 0.00 3.69
1592 1978 0.036294 GTTCCCCACAGCTGACTACC 60.036 60.000 23.35 0.00 0.00 3.18
1593 1979 0.977395 AGTTCCCCACAGCTGACTAC 59.023 55.000 23.35 9.11 0.00 2.73
1594 1980 0.976641 CAGTTCCCCACAGCTGACTA 59.023 55.000 23.35 0.00 0.00 2.59
1595 1981 1.757306 CAGTTCCCCACAGCTGACT 59.243 57.895 23.35 9.37 0.00 3.41
1596 1982 1.302832 CCAGTTCCCCACAGCTGAC 60.303 63.158 23.35 6.81 0.00 3.51
1597 1983 2.528818 CCCAGTTCCCCACAGCTGA 61.529 63.158 23.35 0.00 0.00 4.26
1598 1984 2.034687 CCCAGTTCCCCACAGCTG 59.965 66.667 13.48 13.48 0.00 4.24
1599 1985 3.260100 CCCCAGTTCCCCACAGCT 61.260 66.667 0.00 0.00 0.00 4.24
1600 1986 4.366684 CCCCCAGTTCCCCACAGC 62.367 72.222 0.00 0.00 0.00 4.40
1601 1987 2.469765 AACCCCCAGTTCCCCACAG 61.470 63.158 0.00 0.00 30.99 3.66
1602 1988 2.370403 AACCCCCAGTTCCCCACA 60.370 61.111 0.00 0.00 30.99 4.17
1603 1989 2.117423 CAACCCCCAGTTCCCCAC 59.883 66.667 0.00 0.00 36.18 4.61
1604 1990 2.038221 TCAACCCCCAGTTCCCCA 60.038 61.111 0.00 0.00 36.18 4.96
1605 1991 2.138453 GAGTCAACCCCCAGTTCCCC 62.138 65.000 0.00 0.00 36.18 4.81
1606 1992 1.134438 AGAGTCAACCCCCAGTTCCC 61.134 60.000 0.00 0.00 36.18 3.97
1607 1993 0.771755 AAGAGTCAACCCCCAGTTCC 59.228 55.000 0.00 0.00 36.18 3.62
1608 1994 1.420138 TCAAGAGTCAACCCCCAGTTC 59.580 52.381 0.00 0.00 36.18 3.01
1609 1995 1.143073 GTCAAGAGTCAACCCCCAGTT 59.857 52.381 0.00 0.00 40.16 3.16
1610 1996 0.765510 GTCAAGAGTCAACCCCCAGT 59.234 55.000 0.00 0.00 0.00 4.00
1611 1997 1.059913 AGTCAAGAGTCAACCCCCAG 58.940 55.000 0.00 0.00 0.00 4.45
1612 1998 1.518367 AAGTCAAGAGTCAACCCCCA 58.482 50.000 0.00 0.00 0.00 4.96
1613 1999 2.658807 AAAGTCAAGAGTCAACCCCC 57.341 50.000 0.00 0.00 0.00 5.40
1614 2000 5.131067 ACTTAAAAGTCAAGAGTCAACCCC 58.869 41.667 0.00 0.00 32.86 4.95
1615 2001 6.511282 CGAACTTAAAAGTCAAGAGTCAACCC 60.511 42.308 0.00 0.00 38.57 4.11
1616 2002 6.036844 ACGAACTTAAAAGTCAAGAGTCAACC 59.963 38.462 0.00 0.00 38.57 3.77
1617 2003 7.001695 ACGAACTTAAAAGTCAAGAGTCAAC 57.998 36.000 0.00 0.00 38.57 3.18
1618 2004 7.605410 AACGAACTTAAAAGTCAAGAGTCAA 57.395 32.000 0.00 0.00 38.57 3.18
1619 2005 7.332430 TGAAACGAACTTAAAAGTCAAGAGTCA 59.668 33.333 0.00 0.00 38.57 3.41
1620 2006 7.681903 TGAAACGAACTTAAAAGTCAAGAGTC 58.318 34.615 0.00 0.00 38.57 3.36
1621 2007 7.333672 ACTGAAACGAACTTAAAAGTCAAGAGT 59.666 33.333 0.00 0.00 38.57 3.24
1622 2008 7.636359 CACTGAAACGAACTTAAAAGTCAAGAG 59.364 37.037 0.00 0.00 38.57 2.85
1623 2009 7.118680 ACACTGAAACGAACTTAAAAGTCAAGA 59.881 33.333 0.00 0.00 38.57 3.02
1624 2010 7.241376 ACACTGAAACGAACTTAAAAGTCAAG 58.759 34.615 0.00 0.00 38.57 3.02
1625 2011 7.136289 ACACTGAAACGAACTTAAAAGTCAA 57.864 32.000 0.00 0.00 38.57 3.18
1626 2012 6.730960 ACACTGAAACGAACTTAAAAGTCA 57.269 33.333 0.00 0.00 38.57 3.41
1627 2013 9.712359 AATTACACTGAAACGAACTTAAAAGTC 57.288 29.630 0.00 0.00 38.57 3.01
1642 2028 8.440059 CGCACTTGTTAGATAAATTACACTGAA 58.560 33.333 0.00 0.00 0.00 3.02
1643 2029 7.815549 TCGCACTTGTTAGATAAATTACACTGA 59.184 33.333 0.00 0.00 0.00 3.41
1644 2030 7.898309 GTCGCACTTGTTAGATAAATTACACTG 59.102 37.037 0.00 0.00 0.00 3.66
1645 2031 7.064253 GGTCGCACTTGTTAGATAAATTACACT 59.936 37.037 0.00 0.00 0.00 3.55
1646 2032 7.148540 TGGTCGCACTTGTTAGATAAATTACAC 60.149 37.037 0.00 0.00 0.00 2.90
1647 2033 6.874664 TGGTCGCACTTGTTAGATAAATTACA 59.125 34.615 0.00 0.00 0.00 2.41
1648 2034 7.277098 TCTGGTCGCACTTGTTAGATAAATTAC 59.723 37.037 0.00 0.00 0.00 1.89
1649 2035 7.277098 GTCTGGTCGCACTTGTTAGATAAATTA 59.723 37.037 0.00 0.00 0.00 1.40
1650 2036 6.092259 GTCTGGTCGCACTTGTTAGATAAATT 59.908 38.462 0.00 0.00 0.00 1.82
1651 2037 5.581085 GTCTGGTCGCACTTGTTAGATAAAT 59.419 40.000 0.00 0.00 0.00 1.40
1652 2038 4.927425 GTCTGGTCGCACTTGTTAGATAAA 59.073 41.667 0.00 0.00 0.00 1.40
1653 2039 4.021807 TGTCTGGTCGCACTTGTTAGATAA 60.022 41.667 0.00 0.00 0.00 1.75
1654 2040 3.508402 TGTCTGGTCGCACTTGTTAGATA 59.492 43.478 0.00 0.00 0.00 1.98
1655 2041 2.299013 TGTCTGGTCGCACTTGTTAGAT 59.701 45.455 0.00 0.00 0.00 1.98
1656 2042 1.684450 TGTCTGGTCGCACTTGTTAGA 59.316 47.619 0.00 0.00 0.00 2.10
1657 2043 2.148916 TGTCTGGTCGCACTTGTTAG 57.851 50.000 0.00 0.00 0.00 2.34
1658 2044 2.605837 TTGTCTGGTCGCACTTGTTA 57.394 45.000 0.00 0.00 0.00 2.41
1659 2045 1.745232 TTTGTCTGGTCGCACTTGTT 58.255 45.000 0.00 0.00 0.00 2.83
1660 2046 1.967319 ATTTGTCTGGTCGCACTTGT 58.033 45.000 0.00 0.00 0.00 3.16
1661 2047 2.290367 TCAATTTGTCTGGTCGCACTTG 59.710 45.455 0.00 0.00 0.00 3.16
1662 2048 2.290641 GTCAATTTGTCTGGTCGCACTT 59.709 45.455 0.00 0.00 0.00 3.16
1663 2049 1.873591 GTCAATTTGTCTGGTCGCACT 59.126 47.619 0.00 0.00 0.00 4.40
1664 2050 1.601903 TGTCAATTTGTCTGGTCGCAC 59.398 47.619 0.00 0.00 0.00 5.34
1665 2051 1.960417 TGTCAATTTGTCTGGTCGCA 58.040 45.000 0.00 0.00 0.00 5.10
1666 2052 3.189287 AGAATGTCAATTTGTCTGGTCGC 59.811 43.478 0.00 0.00 0.00 5.19
1667 2053 6.480524 TTAGAATGTCAATTTGTCTGGTCG 57.519 37.500 0.00 0.00 0.00 4.79
1668 2054 7.756722 CCATTTAGAATGTCAATTTGTCTGGTC 59.243 37.037 0.00 0.00 0.00 4.02
1669 2055 7.451255 TCCATTTAGAATGTCAATTTGTCTGGT 59.549 33.333 0.00 0.00 0.00 4.00
1670 2056 7.829725 TCCATTTAGAATGTCAATTTGTCTGG 58.170 34.615 0.00 0.00 0.00 3.86
1671 2057 9.865321 AATCCATTTAGAATGTCAATTTGTCTG 57.135 29.630 0.00 0.00 0.00 3.51
1672 2058 9.865321 CAATCCATTTAGAATGTCAATTTGTCT 57.135 29.630 0.00 0.00 0.00 3.41
1673 2059 9.643693 ACAATCCATTTAGAATGTCAATTTGTC 57.356 29.630 0.00 0.00 0.00 3.18
1678 2064 9.643693 GACAAACAATCCATTTAGAATGTCAAT 57.356 29.630 0.00 0.00 34.95 2.57
1679 2065 8.637099 TGACAAACAATCCATTTAGAATGTCAA 58.363 29.630 0.00 0.00 40.07 3.18
1680 2066 8.081633 GTGACAAACAATCCATTTAGAATGTCA 58.918 33.333 0.00 0.00 40.55 3.58
1681 2067 8.081633 TGTGACAAACAATCCATTTAGAATGTC 58.918 33.333 0.00 0.00 35.24 3.06
1682 2068 7.950512 TGTGACAAACAATCCATTTAGAATGT 58.049 30.769 0.58 0.00 35.24 2.71
1683 2069 8.815141 TTGTGACAAACAATCCATTTAGAATG 57.185 30.769 0.00 0.00 43.96 2.67
1696 2082 9.915629 AAACAACTTATTACTTGTGACAAACAA 57.084 25.926 0.00 0.00 46.66 2.83
1697 2083 9.915629 AAAACAACTTATTACTTGTGACAAACA 57.084 25.926 0.00 0.00 36.85 2.83
1748 2134 9.661954 AGAGGAAATTTCAGGATAGTACTATCA 57.338 33.333 33.42 19.37 42.76 2.15
1752 2138 7.982354 CGAAAGAGGAAATTTCAGGATAGTACT 59.018 37.037 19.49 0.00 36.63 2.73
1753 2139 7.254488 GCGAAAGAGGAAATTTCAGGATAGTAC 60.254 40.741 19.49 0.00 36.63 2.73
1754 2140 6.761714 GCGAAAGAGGAAATTTCAGGATAGTA 59.238 38.462 19.49 0.00 36.63 1.82
1755 2141 5.586643 GCGAAAGAGGAAATTTCAGGATAGT 59.413 40.000 19.49 0.00 36.63 2.12
1756 2142 5.008118 GGCGAAAGAGGAAATTTCAGGATAG 59.992 44.000 19.49 6.45 36.63 2.08
1757 2143 4.881850 GGCGAAAGAGGAAATTTCAGGATA 59.118 41.667 19.49 0.00 36.63 2.59
1758 2144 3.696548 GGCGAAAGAGGAAATTTCAGGAT 59.303 43.478 19.49 2.64 36.63 3.24
1759 2145 3.081804 GGCGAAAGAGGAAATTTCAGGA 58.918 45.455 19.49 0.00 36.63 3.86
1760 2146 2.819608 TGGCGAAAGAGGAAATTTCAGG 59.180 45.455 19.49 2.11 36.63 3.86
1761 2147 3.753272 TCTGGCGAAAGAGGAAATTTCAG 59.247 43.478 19.49 5.36 36.63 3.02
1762 2148 3.750371 TCTGGCGAAAGAGGAAATTTCA 58.250 40.909 19.49 0.00 36.63 2.69
1763 2149 4.637977 AGATCTGGCGAAAGAGGAAATTTC 59.362 41.667 9.83 9.83 34.09 2.17
1764 2150 4.397417 CAGATCTGGCGAAAGAGGAAATTT 59.603 41.667 15.38 0.00 0.00 1.82
1765 2151 3.944015 CAGATCTGGCGAAAGAGGAAATT 59.056 43.478 15.38 0.00 0.00 1.82
1766 2152 3.198635 TCAGATCTGGCGAAAGAGGAAAT 59.801 43.478 22.42 0.00 0.00 2.17
1891 2277 2.929398 CCGACGATGATGTTGTTGATGA 59.071 45.455 0.00 0.00 0.00 2.92
2130 2628 4.036518 AGCTGATTACCCTTGACTCATCT 58.963 43.478 0.00 0.00 0.00 2.90
2173 2671 2.614057 GCAACTAGCGGCAATGACTTAT 59.386 45.455 1.45 0.00 0.00 1.73
2211 2709 2.386935 GGAACCAGCCTATGCCCCT 61.387 63.158 0.00 0.00 38.69 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.