Multiple sequence alignment - TraesCS1A01G311200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G311200 chr1A 100.000 2909 0 0 1 2909 502825541 502822633 0.000000e+00 5373
1 TraesCS1A01G311200 chr1B 91.074 1210 45 13 1118 2286 547578317 547577130 0.000000e+00 1578
2 TraesCS1A01G311200 chr1B 90.562 943 59 10 1 921 547579339 547578405 0.000000e+00 1221
3 TraesCS1A01G311200 chr1B 82.738 336 49 7 2346 2681 547577132 547576806 1.020000e-74 291
4 TraesCS1A01G311200 chr1D 93.950 843 30 7 997 1839 407209150 407208329 0.000000e+00 1254
5 TraesCS1A01G311200 chr1D 87.766 940 69 22 1 917 407210085 407209169 0.000000e+00 1057
6 TraesCS1A01G311200 chr1D 89.862 434 31 7 2195 2623 407175793 407175368 1.970000e-151 545
7 TraesCS1A01G311200 chr1D 86.235 247 16 5 1923 2156 407206413 407206172 4.810000e-63 252
8 TraesCS1A01G311200 chr1D 88.889 99 2 4 1830 1928 407208308 407208219 2.370000e-21 113
9 TraesCS1A01G311200 chr4A 86.382 749 84 8 1102 1838 625686023 625685281 0.000000e+00 802
10 TraesCS1A01G311200 chr3B 79.634 766 115 24 1128 1859 572790154 572790912 2.000000e-141 512
11 TraesCS1A01G311200 chr3A 79.545 748 103 25 1128 1832 575612973 575613713 3.370000e-134 488
12 TraesCS1A01G311200 chr3D 81.548 504 66 18 1346 1832 437670013 437670506 9.770000e-105 390


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G311200 chr1A 502822633 502825541 2908 True 5373 5373 100.000000 1 2909 1 chr1A.!!$R1 2908
1 TraesCS1A01G311200 chr1B 547576806 547579339 2533 True 1030 1578 88.124667 1 2681 3 chr1B.!!$R1 2680
2 TraesCS1A01G311200 chr1D 407206172 407210085 3913 True 669 1254 89.210000 1 2156 4 chr1D.!!$R2 2155
3 TraesCS1A01G311200 chr4A 625685281 625686023 742 True 802 802 86.382000 1102 1838 1 chr4A.!!$R1 736
4 TraesCS1A01G311200 chr3B 572790154 572790912 758 False 512 512 79.634000 1128 1859 1 chr3B.!!$F1 731
5 TraesCS1A01G311200 chr3A 575612973 575613713 740 False 488 488 79.545000 1128 1832 1 chr3A.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 428 0.107268 AGCTCGCATGATACATGGCA 59.893 50.0 12.56 0.0 0.0 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2389 4357 0.038599 TGACTGGTGCATGGCAGATT 59.961 50.0 0.0 0.0 40.08 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 49 5.470437 CAGATCTGATGATTGGTGGATCTTG 59.530 44.000 18.34 0.00 38.13 3.02
167 176 1.651987 CAGATATTTCCGCGTGTGGT 58.348 50.000 4.92 0.00 0.00 4.16
377 386 4.460683 TGTGCCCGCCGTGGATAC 62.461 66.667 0.00 0.00 42.00 2.24
378 387 4.157120 GTGCCCGCCGTGGATACT 62.157 66.667 0.00 0.00 42.00 2.12
417 426 3.657634 ACTAAGCTCGCATGATACATGG 58.342 45.455 12.56 4.50 0.00 3.66
418 427 1.233019 AAGCTCGCATGATACATGGC 58.767 50.000 12.56 8.14 0.00 4.40
419 428 0.107268 AGCTCGCATGATACATGGCA 59.893 50.000 12.56 0.00 0.00 4.92
434 456 9.461312 TGATACATGGCAAAGTAAACTAAGATT 57.539 29.630 7.16 0.00 0.00 2.40
537 566 4.598894 CAGCGAGCCTGGATCGGG 62.599 72.222 32.25 9.37 41.94 5.14
570 599 2.035442 GCTGCTCCGGTCCAAGAAC 61.035 63.158 0.00 0.00 0.00 3.01
587 616 2.637025 CGGCACTGTTTTGACGGG 59.363 61.111 0.00 0.00 44.79 5.28
589 618 2.561037 GGCACTGTTTTGACGGGGG 61.561 63.158 0.00 0.00 0.00 5.40
590 619 3.039134 CACTGTTTTGACGGGGGC 58.961 61.111 0.00 0.00 0.00 5.80
591 620 1.826054 CACTGTTTTGACGGGGGCA 60.826 57.895 0.00 0.00 0.00 5.36
593 622 2.902846 TGTTTTGACGGGGGCACG 60.903 61.111 0.00 0.00 40.31 5.34
594 623 3.666253 GTTTTGACGGGGGCACGG 61.666 66.667 5.83 0.00 38.39 4.94
696 726 2.474032 GCTTTTCTGATCGCAACCGTAC 60.474 50.000 0.00 0.00 35.54 3.67
763 793 2.125350 CGACAAGAGGAGCAGGGC 60.125 66.667 0.00 0.00 0.00 5.19
768 798 4.737476 AGAGGAGCAGGGCTGGCT 62.737 66.667 0.00 3.18 46.07 4.75
913 945 2.340809 CACCACGTCGGGCAACTA 59.659 61.111 8.57 0.00 40.22 2.24
917 949 1.005394 CACGTCGGGCAACTAGGTT 60.005 57.895 0.00 0.00 0.00 3.50
918 950 1.012486 CACGTCGGGCAACTAGGTTC 61.012 60.000 0.00 0.00 0.00 3.62
919 951 1.804326 CGTCGGGCAACTAGGTTCG 60.804 63.158 0.00 0.00 0.00 3.95
920 952 1.447314 GTCGGGCAACTAGGTTCGG 60.447 63.158 0.00 0.00 0.00 4.30
921 953 2.818274 CGGGCAACTAGGTTCGGC 60.818 66.667 0.00 0.00 0.00 5.54
922 954 2.669240 GGGCAACTAGGTTCGGCT 59.331 61.111 0.00 0.00 0.00 5.52
923 955 1.745489 GGGCAACTAGGTTCGGCTG 60.745 63.158 0.00 0.00 0.00 4.85
924 956 1.745489 GGCAACTAGGTTCGGCTGG 60.745 63.158 0.00 0.00 0.00 4.85
925 957 2.399356 GCAACTAGGTTCGGCTGGC 61.399 63.158 0.00 0.00 0.00 4.85
926 958 1.003839 CAACTAGGTTCGGCTGGCA 60.004 57.895 1.08 0.00 0.00 4.92
927 959 1.003718 AACTAGGTTCGGCTGGCAC 60.004 57.895 1.08 0.00 0.00 5.01
928 960 2.509336 CTAGGTTCGGCTGGCACG 60.509 66.667 1.08 0.00 0.00 5.34
929 961 4.752879 TAGGTTCGGCTGGCACGC 62.753 66.667 1.08 1.00 0.00 5.34
970 1002 4.796231 CCGGACTCCGTTGGCTCG 62.796 72.222 16.35 0.00 46.80 5.03
987 1019 2.359478 GGTGCACGGGTTGGGTAG 60.359 66.667 11.45 0.00 0.00 3.18
993 1025 1.078708 ACGGGTTGGGTAGCATTCG 60.079 57.895 0.00 0.00 0.00 3.34
995 1027 1.301954 GGGTTGGGTAGCATTCGGT 59.698 57.895 0.00 0.00 0.00 4.69
997 1029 1.065272 GGGTTGGGTAGCATTCGGTTA 60.065 52.381 0.00 0.00 0.00 2.85
999 1031 1.669265 GTTGGGTAGCATTCGGTTAGC 59.331 52.381 0.00 0.00 0.00 3.09
1008 1043 1.524355 CATTCGGTTAGCATGAGCGAG 59.476 52.381 0.00 0.00 45.99 5.03
1875 2018 3.041940 GACGGGTTCACTGCCACG 61.042 66.667 0.00 0.00 0.00 4.94
2053 4019 2.111756 CGCACAGCTGTTTGTTTCTTC 58.888 47.619 18.94 0.00 0.00 2.87
2055 4021 3.002246 CGCACAGCTGTTTGTTTCTTCTA 59.998 43.478 18.94 0.00 0.00 2.10
2056 4022 4.319766 CGCACAGCTGTTTGTTTCTTCTAT 60.320 41.667 18.94 0.00 0.00 1.98
2099 4066 4.899239 GCGGCGCCAGCTACAGAT 62.899 66.667 28.98 0.00 44.37 2.90
2100 4067 2.202932 CGGCGCCAGCTACAGATT 60.203 61.111 28.98 0.00 44.37 2.40
2126 4094 4.796225 CTCTTTCGAGCGACCTCC 57.204 61.111 0.00 0.00 34.49 4.30
2158 4126 7.412672 CCGCAACTTACCTGAAATAAACTACTC 60.413 40.741 0.00 0.00 0.00 2.59
2160 4128 7.606839 GCAACTTACCTGAAATAAACTACTCCT 59.393 37.037 0.00 0.00 0.00 3.69
2183 4151 7.658525 CTATAGTAGGATCTCATGGCTGAAT 57.341 40.000 0.00 0.00 0.00 2.57
2184 4152 6.949117 ATAGTAGGATCTCATGGCTGAATT 57.051 37.500 0.00 0.00 0.00 2.17
2185 4153 5.643421 AGTAGGATCTCATGGCTGAATTT 57.357 39.130 0.00 0.00 0.00 1.82
2187 4155 4.515028 AGGATCTCATGGCTGAATTTCA 57.485 40.909 0.00 0.00 0.00 2.69
2188 4156 5.063017 AGGATCTCATGGCTGAATTTCAT 57.937 39.130 0.00 0.00 0.00 2.57
2189 4157 4.827835 AGGATCTCATGGCTGAATTTCATG 59.172 41.667 0.00 0.00 39.49 3.07
2190 4158 4.825634 GGATCTCATGGCTGAATTTCATGA 59.174 41.667 0.00 0.00 43.16 3.07
2191 4159 5.278364 GGATCTCATGGCTGAATTTCATGAC 60.278 44.000 0.00 0.00 41.31 3.06
2192 4160 3.949754 TCTCATGGCTGAATTTCATGACC 59.050 43.478 0.00 3.31 41.31 4.02
2193 4161 3.952323 CTCATGGCTGAATTTCATGACCT 59.048 43.478 0.00 0.00 41.31 3.85
2194 4162 5.104402 TCTCATGGCTGAATTTCATGACCTA 60.104 40.000 0.00 0.00 41.31 3.08
2195 4163 4.883585 TCATGGCTGAATTTCATGACCTAC 59.116 41.667 0.00 0.00 41.31 3.18
2196 4164 3.270027 TGGCTGAATTTCATGACCTACG 58.730 45.455 0.00 0.00 0.00 3.51
2197 4165 2.032178 GGCTGAATTTCATGACCTACGC 59.968 50.000 0.00 0.00 0.00 4.42
2198 4166 2.032178 GCTGAATTTCATGACCTACGCC 59.968 50.000 0.00 0.00 0.00 5.68
2199 4167 3.270027 CTGAATTTCATGACCTACGCCA 58.730 45.455 0.00 0.00 0.00 5.69
2200 4168 3.879295 CTGAATTTCATGACCTACGCCAT 59.121 43.478 0.00 0.00 0.00 4.40
2201 4169 3.627123 TGAATTTCATGACCTACGCCATG 59.373 43.478 0.00 0.00 40.97 3.66
2202 4170 2.036958 TTTCATGACCTACGCCATGG 57.963 50.000 7.63 7.63 40.26 3.66
2205 4173 1.768275 TCATGACCTACGCCATGGATT 59.232 47.619 18.40 2.89 40.26 3.01
2210 4178 2.549754 GACCTACGCCATGGATTGATTG 59.450 50.000 18.40 0.00 0.00 2.67
2223 4191 9.081204 CCATGGATTGATTGATTGATTACCTTA 57.919 33.333 5.56 0.00 0.00 2.69
2262 4230 3.257469 CTCATGGCTGAGTTTCTAGCA 57.743 47.619 0.00 0.00 43.35 3.49
2282 4250 0.734942 TCGGCGTCGATTTGTTCTCC 60.735 55.000 8.66 0.00 40.88 3.71
2283 4251 1.011968 CGGCGTCGATTTGTTCTCCA 61.012 55.000 1.44 0.00 39.00 3.86
2284 4252 1.369625 GGCGTCGATTTGTTCTCCAT 58.630 50.000 0.00 0.00 0.00 3.41
2285 4253 1.062587 GGCGTCGATTTGTTCTCCATG 59.937 52.381 0.00 0.00 0.00 3.66
2286 4254 1.529826 GCGTCGATTTGTTCTCCATGC 60.530 52.381 0.00 0.00 0.00 4.06
2287 4255 1.062587 CGTCGATTTGTTCTCCATGCC 59.937 52.381 0.00 0.00 0.00 4.40
2288 4256 1.062587 GTCGATTTGTTCTCCATGCCG 59.937 52.381 0.00 0.00 0.00 5.69
2289 4257 0.248215 CGATTTGTTCTCCATGCCGC 60.248 55.000 0.00 0.00 0.00 6.53
2290 4258 0.101219 GATTTGTTCTCCATGCCGCC 59.899 55.000 0.00 0.00 0.00 6.13
2291 4259 1.656818 ATTTGTTCTCCATGCCGCCG 61.657 55.000 0.00 0.00 0.00 6.46
2292 4260 4.776322 TGTTCTCCATGCCGCCGG 62.776 66.667 0.00 0.00 0.00 6.13
2307 4275 4.292178 CGGCATCGCTCCTCCCTC 62.292 72.222 0.00 0.00 0.00 4.30
2308 4276 3.934962 GGCATCGCTCCTCCCTCC 61.935 72.222 0.00 0.00 0.00 4.30
2309 4277 3.934962 GCATCGCTCCTCCCTCCC 61.935 72.222 0.00 0.00 0.00 4.30
2310 4278 2.123077 CATCGCTCCTCCCTCCCT 60.123 66.667 0.00 0.00 0.00 4.20
2311 4279 2.123077 ATCGCTCCTCCCTCCCTG 60.123 66.667 0.00 0.00 0.00 4.45
2312 4280 3.015332 ATCGCTCCTCCCTCCCTGT 62.015 63.158 0.00 0.00 0.00 4.00
2313 4281 2.937959 ATCGCTCCTCCCTCCCTGTC 62.938 65.000 0.00 0.00 0.00 3.51
2314 4282 2.766229 GCTCCTCCCTCCCTGTCC 60.766 72.222 0.00 0.00 0.00 4.02
2315 4283 3.114390 CTCCTCCCTCCCTGTCCT 58.886 66.667 0.00 0.00 0.00 3.85
2316 4284 1.075600 CTCCTCCCTCCCTGTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
2317 4285 2.041405 CCTCCCTCCCTGTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
2318 4286 2.443016 CTCCCTCCCTGTCCTCCG 60.443 72.222 0.00 0.00 0.00 4.63
2319 4287 4.779733 TCCCTCCCTGTCCTCCGC 62.780 72.222 0.00 0.00 0.00 5.54
2322 4290 3.827898 CTCCCTGTCCTCCGCGTC 61.828 72.222 4.92 0.00 0.00 5.19
2323 4291 4.361971 TCCCTGTCCTCCGCGTCT 62.362 66.667 4.92 0.00 0.00 4.18
2324 4292 4.135153 CCCTGTCCTCCGCGTCTG 62.135 72.222 4.92 0.00 0.00 3.51
2325 4293 4.135153 CCTGTCCTCCGCGTCTGG 62.135 72.222 4.92 3.96 0.00 3.86
2326 4294 3.374402 CTGTCCTCCGCGTCTGGT 61.374 66.667 4.92 0.00 0.00 4.00
2327 4295 3.633094 CTGTCCTCCGCGTCTGGTG 62.633 68.421 4.92 0.00 0.00 4.17
2328 4296 3.371063 GTCCTCCGCGTCTGGTGA 61.371 66.667 4.92 0.00 0.00 4.02
2329 4297 3.062466 TCCTCCGCGTCTGGTGAG 61.062 66.667 4.92 2.79 0.00 3.51
2330 4298 4.803426 CCTCCGCGTCTGGTGAGC 62.803 72.222 4.92 0.00 0.00 4.26
2331 4299 4.803426 CTCCGCGTCTGGTGAGCC 62.803 72.222 4.92 0.00 0.00 4.70
2334 4302 4.363990 CGCGTCTGGTGAGCCACT 62.364 66.667 0.00 0.00 40.46 4.00
2335 4303 2.031163 GCGTCTGGTGAGCCACTT 59.969 61.111 5.48 0.00 40.46 3.16
2336 4304 2.029844 GCGTCTGGTGAGCCACTTC 61.030 63.158 5.48 0.00 40.46 3.01
2337 4305 1.668294 CGTCTGGTGAGCCACTTCT 59.332 57.895 5.48 0.00 40.46 2.85
2338 4306 0.034059 CGTCTGGTGAGCCACTTCTT 59.966 55.000 5.48 0.00 40.46 2.52
2339 4307 1.802069 GTCTGGTGAGCCACTTCTTC 58.198 55.000 5.48 0.00 40.46 2.87
2340 4308 0.318441 TCTGGTGAGCCACTTCTTCG 59.682 55.000 5.48 0.00 40.46 3.79
2341 4309 0.671781 CTGGTGAGCCACTTCTTCGG 60.672 60.000 5.48 0.00 40.46 4.30
2342 4310 1.371558 GGTGAGCCACTTCTTCGGT 59.628 57.895 5.48 0.00 34.40 4.69
2343 4311 0.250338 GGTGAGCCACTTCTTCGGTT 60.250 55.000 5.48 0.00 34.40 4.44
2344 4312 1.149148 GTGAGCCACTTCTTCGGTTC 58.851 55.000 0.00 0.00 33.44 3.62
2372 4340 4.520111 CAGACAAATGGACAACAGAATGGA 59.480 41.667 0.00 0.00 43.62 3.41
2395 4363 2.630317 CATGGCTCGCGAATCTGC 59.370 61.111 11.33 10.20 0.00 4.26
2403 4371 2.410469 GCGAATCTGCCATGCACC 59.590 61.111 0.00 0.00 33.79 5.01
2406 4374 1.028330 CGAATCTGCCATGCACCAGT 61.028 55.000 9.77 0.00 33.79 4.00
2417 4385 0.467844 TGCACCAGTCACCATTGCTT 60.468 50.000 0.00 0.00 34.18 3.91
2439 4407 1.991121 AGGTAGAACCACTGTCGTCA 58.009 50.000 0.00 0.00 41.95 4.35
2451 4419 0.519961 TGTCGTCAAGCTCGATCGAA 59.480 50.000 19.92 0.02 39.45 3.71
2454 4422 2.968006 GTCGTCAAGCTCGATCGAATAG 59.032 50.000 19.92 8.88 39.45 1.73
2464 4432 3.271729 TCGATCGAATAGCTAGGCCTAG 58.728 50.000 32.12 32.12 36.29 3.02
2467 4435 2.515854 TCGAATAGCTAGGCCTAGGTG 58.484 52.381 41.68 29.40 43.03 4.00
2515 4483 3.462678 GTCACGGAGGAGAGGCCC 61.463 72.222 0.00 0.00 37.37 5.80
2569 4537 7.148639 CGTTCGGAATTCAGAGTTTCAGATAAA 60.149 37.037 7.93 0.00 0.00 1.40
2570 4538 8.504005 GTTCGGAATTCAGAGTTTCAGATAAAA 58.496 33.333 7.93 0.00 0.00 1.52
2571 4539 8.256611 TCGGAATTCAGAGTTTCAGATAAAAG 57.743 34.615 7.93 0.00 0.00 2.27
2572 4540 7.878127 TCGGAATTCAGAGTTTCAGATAAAAGT 59.122 33.333 7.93 0.00 0.00 2.66
2573 4541 7.959651 CGGAATTCAGAGTTTCAGATAAAAGTG 59.040 37.037 7.93 0.00 0.00 3.16
2574 4542 7.752686 GGAATTCAGAGTTTCAGATAAAAGTGC 59.247 37.037 7.93 0.00 0.00 4.40
2575 4543 7.992754 ATTCAGAGTTTCAGATAAAAGTGCT 57.007 32.000 0.00 0.00 0.00 4.40
2576 4544 6.791887 TCAGAGTTTCAGATAAAAGTGCTG 57.208 37.500 0.00 0.00 0.00 4.41
2577 4545 6.291377 TCAGAGTTTCAGATAAAAGTGCTGT 58.709 36.000 0.00 0.00 0.00 4.40
2578 4546 6.425114 TCAGAGTTTCAGATAAAAGTGCTGTC 59.575 38.462 0.00 0.00 0.00 3.51
2579 4547 5.406780 AGAGTTTCAGATAAAAGTGCTGTCG 59.593 40.000 0.00 0.00 0.00 4.35
2580 4548 5.297547 AGTTTCAGATAAAAGTGCTGTCGA 58.702 37.500 0.00 0.00 0.00 4.20
2581 4549 5.934625 AGTTTCAGATAAAAGTGCTGTCGAT 59.065 36.000 0.00 0.00 0.00 3.59
2582 4550 5.784750 TTCAGATAAAAGTGCTGTCGATG 57.215 39.130 0.00 0.00 0.00 3.84
2583 4551 3.618594 TCAGATAAAAGTGCTGTCGATGC 59.381 43.478 6.44 6.44 0.00 3.91
2584 4552 3.620374 CAGATAAAAGTGCTGTCGATGCT 59.380 43.478 13.16 0.00 0.00 3.79
2585 4553 4.093998 CAGATAAAAGTGCTGTCGATGCTT 59.906 41.667 13.16 3.77 0.00 3.91
2586 4554 2.693797 AAAAGTGCTGTCGATGCTTG 57.306 45.000 13.16 0.00 0.00 4.01
2587 4555 1.597742 AAAGTGCTGTCGATGCTTGT 58.402 45.000 13.16 0.00 0.00 3.16
2593 4561 2.288763 TGCTGTCGATGCTTGTAAGTGA 60.289 45.455 13.16 0.00 0.00 3.41
2602 4570 1.729149 GCTTGTAAGTGATGCCGTTGC 60.729 52.381 0.00 0.00 38.26 4.17
2644 4627 5.749109 AGGAATGTTCGATTCGATACTGAAC 59.251 40.000 9.96 4.57 39.40 3.18
2645 4628 5.749109 GGAATGTTCGATTCGATACTGAACT 59.251 40.000 9.96 3.34 39.61 3.01
2647 4630 4.421058 TGTTCGATTCGATACTGAACTGG 58.579 43.478 9.96 0.00 39.61 4.00
2672 4655 0.966875 GTGGCCTGCACCATCAATGA 60.967 55.000 3.32 0.00 43.01 2.57
2688 4671 7.473027 CATCAATGATGGAAAATAAGTTGCC 57.527 36.000 15.09 0.00 36.51 4.52
2689 4672 6.602410 TCAATGATGGAAAATAAGTTGCCA 57.398 33.333 0.00 0.00 0.00 4.92
2690 4673 6.632909 TCAATGATGGAAAATAAGTTGCCAG 58.367 36.000 0.00 0.00 31.23 4.85
2691 4674 6.211184 TCAATGATGGAAAATAAGTTGCCAGT 59.789 34.615 0.00 0.00 31.23 4.00
2692 4675 7.395772 TCAATGATGGAAAATAAGTTGCCAGTA 59.604 33.333 0.00 0.00 31.23 2.74
2693 4676 7.716799 ATGATGGAAAATAAGTTGCCAGTAA 57.283 32.000 0.00 0.00 31.23 2.24
2694 4677 6.919721 TGATGGAAAATAAGTTGCCAGTAAC 58.080 36.000 0.00 0.00 31.23 2.50
2695 4678 6.719370 TGATGGAAAATAAGTTGCCAGTAACT 59.281 34.615 0.00 0.00 42.43 2.24
2696 4679 7.885922 TGATGGAAAATAAGTTGCCAGTAACTA 59.114 33.333 1.42 0.00 39.86 2.24
2697 4680 8.644374 ATGGAAAATAAGTTGCCAGTAACTAA 57.356 30.769 1.42 0.00 39.86 2.24
2698 4681 8.106247 TGGAAAATAAGTTGCCAGTAACTAAG 57.894 34.615 1.42 0.00 39.86 2.18
2699 4682 7.027760 GGAAAATAAGTTGCCAGTAACTAAGC 58.972 38.462 1.42 0.00 39.86 3.09
2700 4683 7.094334 GGAAAATAAGTTGCCAGTAACTAAGCT 60.094 37.037 1.42 0.00 39.86 3.74
2701 4684 8.857694 AAAATAAGTTGCCAGTAACTAAGCTA 57.142 30.769 1.42 0.00 39.86 3.32
2702 4685 9.462606 AAAATAAGTTGCCAGTAACTAAGCTAT 57.537 29.630 1.42 0.00 39.86 2.97
2707 4690 9.765795 AAGTTGCCAGTAACTAAGCTATATAAG 57.234 33.333 1.42 0.00 39.86 1.73
2708 4691 9.144298 AGTTGCCAGTAACTAAGCTATATAAGA 57.856 33.333 0.00 0.00 39.03 2.10
2709 4692 9.760077 GTTGCCAGTAACTAAGCTATATAAGAA 57.240 33.333 0.00 0.00 0.00 2.52
2710 4693 9.982651 TTGCCAGTAACTAAGCTATATAAGAAG 57.017 33.333 0.00 0.00 0.00 2.85
2711 4694 8.585881 TGCCAGTAACTAAGCTATATAAGAAGG 58.414 37.037 0.00 0.00 0.00 3.46
2712 4695 8.586744 GCCAGTAACTAAGCTATATAAGAAGGT 58.413 37.037 0.00 0.00 0.00 3.50
2713 4696 9.915629 CCAGTAACTAAGCTATATAAGAAGGTG 57.084 37.037 0.00 0.00 0.00 4.00
2716 4699 9.911138 GTAACTAAGCTATATAAGAAGGTGACC 57.089 37.037 0.00 0.00 0.00 4.02
2717 4700 7.541916 ACTAAGCTATATAAGAAGGTGACCC 57.458 40.000 0.00 0.00 0.00 4.46
2718 4701 7.306781 ACTAAGCTATATAAGAAGGTGACCCT 58.693 38.462 0.00 0.00 45.63 4.34
2719 4702 8.454494 ACTAAGCTATATAAGAAGGTGACCCTA 58.546 37.037 0.00 0.00 41.56 3.53
2720 4703 7.784470 AAGCTATATAAGAAGGTGACCCTAG 57.216 40.000 0.00 0.00 41.56 3.02
2721 4704 6.257586 AGCTATATAAGAAGGTGACCCTAGG 58.742 44.000 0.06 0.06 41.56 3.02
2722 4705 6.017830 GCTATATAAGAAGGTGACCCTAGGT 58.982 44.000 8.29 0.00 41.56 3.08
2723 4706 7.019356 AGCTATATAAGAAGGTGACCCTAGGTA 59.981 40.741 8.29 0.00 41.56 3.08
2724 4707 7.840210 GCTATATAAGAAGGTGACCCTAGGTAT 59.160 40.741 8.29 0.00 41.56 2.73
2725 4708 9.411189 CTATATAAGAAGGTGACCCTAGGTATC 57.589 40.741 8.29 5.67 41.56 2.24
2726 4709 4.628661 AAGAAGGTGACCCTAGGTATCT 57.371 45.455 8.29 0.00 41.56 1.98
2727 4710 3.917300 AGAAGGTGACCCTAGGTATCTG 58.083 50.000 8.29 0.00 41.56 2.90
2728 4711 2.089600 AGGTGACCCTAGGTATCTGC 57.910 55.000 8.29 3.06 40.19 4.26
2729 4712 1.049402 GGTGACCCTAGGTATCTGCC 58.951 60.000 8.29 8.06 35.25 4.85
2730 4713 1.691482 GGTGACCCTAGGTATCTGCCA 60.691 57.143 8.29 0.00 35.25 4.92
2731 4714 2.330216 GTGACCCTAGGTATCTGCCAT 58.670 52.381 8.29 0.00 35.25 4.40
2732 4715 2.037772 GTGACCCTAGGTATCTGCCATG 59.962 54.545 8.29 0.00 35.25 3.66
2733 4716 1.625818 GACCCTAGGTATCTGCCATGG 59.374 57.143 7.63 7.63 35.25 3.66
2734 4717 0.326264 CCCTAGGTATCTGCCATGGC 59.674 60.000 30.54 30.54 42.35 4.40
2735 4718 1.356124 CCTAGGTATCTGCCATGGCT 58.644 55.000 35.53 19.66 42.51 4.75
2736 4719 1.277557 CCTAGGTATCTGCCATGGCTC 59.722 57.143 35.53 19.69 42.51 4.70
2737 4720 2.255406 CTAGGTATCTGCCATGGCTCT 58.745 52.381 35.53 21.99 42.51 4.09
2738 4721 1.055040 AGGTATCTGCCATGGCTCTC 58.945 55.000 35.53 20.32 42.51 3.20
2739 4722 1.055040 GGTATCTGCCATGGCTCTCT 58.945 55.000 35.53 19.96 42.51 3.10
2740 4723 2.158249 AGGTATCTGCCATGGCTCTCTA 60.158 50.000 35.53 18.99 42.51 2.43
2741 4724 2.634940 GGTATCTGCCATGGCTCTCTAA 59.365 50.000 35.53 14.98 42.51 2.10
2742 4725 3.306641 GGTATCTGCCATGGCTCTCTAAG 60.307 52.174 35.53 23.48 42.51 2.18
2743 4726 1.871418 TCTGCCATGGCTCTCTAAGT 58.129 50.000 35.53 0.00 42.51 2.24
2744 4727 2.191400 TCTGCCATGGCTCTCTAAGTT 58.809 47.619 35.53 0.00 42.51 2.66
2745 4728 3.374764 TCTGCCATGGCTCTCTAAGTTA 58.625 45.455 35.53 11.92 42.51 2.24
2746 4729 3.133003 TCTGCCATGGCTCTCTAAGTTAC 59.867 47.826 35.53 4.22 42.51 2.50
2747 4730 2.837591 TGCCATGGCTCTCTAAGTTACA 59.162 45.455 35.53 9.43 42.51 2.41
2748 4731 3.118629 TGCCATGGCTCTCTAAGTTACAG 60.119 47.826 35.53 0.00 42.51 2.74
2749 4732 3.118592 GCCATGGCTCTCTAAGTTACAGT 60.119 47.826 29.98 0.00 38.26 3.55
2750 4733 4.624125 GCCATGGCTCTCTAAGTTACAGTT 60.624 45.833 29.98 0.00 38.26 3.16
2751 4734 5.395324 GCCATGGCTCTCTAAGTTACAGTTA 60.395 44.000 29.98 0.00 38.26 2.24
2752 4735 6.686632 GCCATGGCTCTCTAAGTTACAGTTAT 60.687 42.308 29.98 0.00 38.26 1.89
2753 4736 6.703607 CCATGGCTCTCTAAGTTACAGTTATG 59.296 42.308 0.00 0.00 0.00 1.90
2754 4737 6.852420 TGGCTCTCTAAGTTACAGTTATGT 57.148 37.500 0.00 0.00 43.76 2.29
2755 4738 6.631016 TGGCTCTCTAAGTTACAGTTATGTG 58.369 40.000 0.00 0.00 40.79 3.21
2756 4739 6.043411 GGCTCTCTAAGTTACAGTTATGTGG 58.957 44.000 0.00 0.00 40.79 4.17
2757 4740 5.520649 GCTCTCTAAGTTACAGTTATGTGGC 59.479 44.000 0.00 0.00 40.79 5.01
2758 4741 5.647589 TCTCTAAGTTACAGTTATGTGGCG 58.352 41.667 0.00 0.00 40.79 5.69
2759 4742 5.416639 TCTCTAAGTTACAGTTATGTGGCGA 59.583 40.000 0.00 0.00 40.79 5.54
2760 4743 6.096423 TCTCTAAGTTACAGTTATGTGGCGAT 59.904 38.462 0.00 0.00 40.79 4.58
2761 4744 6.270815 TCTAAGTTACAGTTATGTGGCGATC 58.729 40.000 0.00 0.00 40.79 3.69
2762 4745 3.793559 AGTTACAGTTATGTGGCGATCC 58.206 45.455 0.00 0.00 40.79 3.36
2763 4746 3.196901 AGTTACAGTTATGTGGCGATCCA 59.803 43.478 0.00 0.00 40.79 3.41
2764 4747 4.127171 GTTACAGTTATGTGGCGATCCAT 58.873 43.478 0.00 0.00 45.62 3.41
2765 4748 3.281727 ACAGTTATGTGGCGATCCATT 57.718 42.857 0.00 0.00 45.62 3.16
2766 4749 2.945008 ACAGTTATGTGGCGATCCATTG 59.055 45.455 0.00 0.00 45.62 2.82
2767 4750 2.291465 CAGTTATGTGGCGATCCATTGG 59.709 50.000 0.00 0.00 45.62 3.16
2768 4751 2.092429 AGTTATGTGGCGATCCATTGGT 60.092 45.455 1.86 0.00 45.62 3.67
2769 4752 2.254546 TATGTGGCGATCCATTGGTC 57.745 50.000 1.86 0.00 45.62 4.02
2770 4753 0.466189 ATGTGGCGATCCATTGGTCC 60.466 55.000 1.86 1.41 45.62 4.46
2771 4754 1.224592 GTGGCGATCCATTGGTCCT 59.775 57.895 1.86 0.00 45.62 3.85
2772 4755 0.394352 GTGGCGATCCATTGGTCCTT 60.394 55.000 1.86 0.00 45.62 3.36
2773 4756 0.107214 TGGCGATCCATTGGTCCTTC 60.107 55.000 1.86 0.00 37.47 3.46
2774 4757 0.107214 GGCGATCCATTGGTCCTTCA 60.107 55.000 1.86 0.00 0.00 3.02
2775 4758 1.681780 GGCGATCCATTGGTCCTTCAA 60.682 52.381 1.86 0.00 0.00 2.69
2776 4759 1.672881 GCGATCCATTGGTCCTTCAAG 59.327 52.381 1.86 0.00 0.00 3.02
2777 4760 2.292267 CGATCCATTGGTCCTTCAAGG 58.708 52.381 0.00 0.00 36.46 3.61
2778 4761 2.027385 GATCCATTGGTCCTTCAAGGC 58.973 52.381 0.00 0.00 34.61 4.35
2779 4762 0.776810 TCCATTGGTCCTTCAAGGCA 59.223 50.000 0.00 0.00 34.61 4.75
2780 4763 1.358787 TCCATTGGTCCTTCAAGGCAT 59.641 47.619 0.00 0.00 34.61 4.40
2781 4764 2.580322 TCCATTGGTCCTTCAAGGCATA 59.420 45.455 0.00 0.00 34.61 3.14
2782 4765 3.205056 TCCATTGGTCCTTCAAGGCATAT 59.795 43.478 0.00 0.00 34.61 1.78
2783 4766 3.319972 CCATTGGTCCTTCAAGGCATATG 59.680 47.826 0.00 0.00 34.61 1.78
2784 4767 2.057137 TGGTCCTTCAAGGCATATGC 57.943 50.000 19.79 19.79 34.61 3.14
2785 4768 1.284491 TGGTCCTTCAAGGCATATGCA 59.716 47.619 28.07 5.66 44.36 3.96
2786 4769 1.952296 GGTCCTTCAAGGCATATGCAG 59.048 52.381 28.07 16.18 44.36 4.41
2787 4770 2.421952 GGTCCTTCAAGGCATATGCAGA 60.422 50.000 28.07 18.99 44.36 4.26
2788 4771 2.877168 GTCCTTCAAGGCATATGCAGAG 59.123 50.000 28.07 16.42 44.36 3.35
2789 4772 2.507058 TCCTTCAAGGCATATGCAGAGT 59.493 45.455 28.07 7.59 44.36 3.24
2790 4773 2.617308 CCTTCAAGGCATATGCAGAGTG 59.383 50.000 28.07 18.45 44.36 3.51
2791 4774 2.336945 TCAAGGCATATGCAGAGTGG 57.663 50.000 28.07 11.46 44.36 4.00
2792 4775 1.134007 TCAAGGCATATGCAGAGTGGG 60.134 52.381 28.07 10.48 44.36 4.61
2793 4776 0.921896 AAGGCATATGCAGAGTGGGT 59.078 50.000 28.07 1.91 44.36 4.51
2794 4777 0.921896 AGGCATATGCAGAGTGGGTT 59.078 50.000 28.07 0.35 44.36 4.11
2795 4778 1.027357 GGCATATGCAGAGTGGGTTG 58.973 55.000 28.07 0.00 44.36 3.77
2796 4779 1.027357 GCATATGCAGAGTGGGTTGG 58.973 55.000 22.84 0.00 41.59 3.77
2797 4780 1.683943 CATATGCAGAGTGGGTTGGG 58.316 55.000 0.00 0.00 0.00 4.12
2798 4781 0.552848 ATATGCAGAGTGGGTTGGGG 59.447 55.000 0.00 0.00 0.00 4.96
2799 4782 2.210144 TATGCAGAGTGGGTTGGGGC 62.210 60.000 0.00 0.00 0.00 5.80
2800 4783 4.284550 GCAGAGTGGGTTGGGGCA 62.285 66.667 0.00 0.00 0.00 5.36
2801 4784 2.520458 CAGAGTGGGTTGGGGCAA 59.480 61.111 0.00 0.00 0.00 4.52
2802 4785 1.077265 CAGAGTGGGTTGGGGCAAT 59.923 57.895 0.00 0.00 0.00 3.56
2803 4786 0.967380 CAGAGTGGGTTGGGGCAATC 60.967 60.000 0.00 0.00 0.00 2.67
2804 4787 1.682344 GAGTGGGTTGGGGCAATCC 60.682 63.158 0.00 0.00 44.30 3.01
2805 4788 2.155197 GAGTGGGTTGGGGCAATCCT 62.155 60.000 0.00 0.00 44.35 3.24
2806 4789 1.229177 GTGGGTTGGGGCAATCCTT 60.229 57.895 0.00 0.00 44.35 3.36
2807 4790 1.078347 TGGGTTGGGGCAATCCTTC 59.922 57.895 0.00 0.00 44.35 3.46
2808 4791 2.052104 GGGTTGGGGCAATCCTTCG 61.052 63.158 0.00 0.00 41.11 3.79
2809 4792 1.001393 GGTTGGGGCAATCCTTCGA 60.001 57.895 0.00 0.00 35.33 3.71
2810 4793 1.032114 GGTTGGGGCAATCCTTCGAG 61.032 60.000 0.00 0.00 35.33 4.04
2811 4794 0.035439 GTTGGGGCAATCCTTCGAGA 60.035 55.000 0.00 0.00 35.33 4.04
2812 4795 0.918983 TTGGGGCAATCCTTCGAGAT 59.081 50.000 0.00 0.00 35.33 2.75
2813 4796 1.801242 TGGGGCAATCCTTCGAGATA 58.199 50.000 0.00 0.00 35.33 1.98
2814 4797 2.338809 TGGGGCAATCCTTCGAGATAT 58.661 47.619 0.00 0.00 35.33 1.63
2815 4798 3.516586 TGGGGCAATCCTTCGAGATATA 58.483 45.455 0.00 0.00 35.33 0.86
2816 4799 4.104086 TGGGGCAATCCTTCGAGATATAT 58.896 43.478 0.00 0.00 35.33 0.86
2817 4800 4.080919 TGGGGCAATCCTTCGAGATATATG 60.081 45.833 0.00 0.00 35.33 1.78
2818 4801 4.162320 GGGGCAATCCTTCGAGATATATGA 59.838 45.833 0.00 0.00 35.33 2.15
2819 4802 5.163258 GGGGCAATCCTTCGAGATATATGAT 60.163 44.000 0.00 0.00 35.33 2.45
2820 4803 5.757320 GGGCAATCCTTCGAGATATATGATG 59.243 44.000 0.00 0.00 0.00 3.07
2821 4804 6.407412 GGGCAATCCTTCGAGATATATGATGA 60.407 42.308 0.00 0.00 0.00 2.92
2822 4805 7.215789 GGCAATCCTTCGAGATATATGATGAT 58.784 38.462 0.00 0.00 0.00 2.45
2823 4806 7.384660 GGCAATCCTTCGAGATATATGATGATC 59.615 40.741 0.00 0.00 0.00 2.92
2824 4807 7.384660 GCAATCCTTCGAGATATATGATGATCC 59.615 40.741 0.00 0.00 0.00 3.36
2825 4808 8.419442 CAATCCTTCGAGATATATGATGATCCA 58.581 37.037 0.00 0.00 0.00 3.41
2826 4809 7.340122 TCCTTCGAGATATATGATGATCCAC 57.660 40.000 0.00 0.00 0.00 4.02
2827 4810 7.122048 TCCTTCGAGATATATGATGATCCACT 58.878 38.462 0.00 0.00 0.00 4.00
2828 4811 7.067981 TCCTTCGAGATATATGATGATCCACTG 59.932 40.741 0.00 0.00 0.00 3.66
2829 4812 6.141560 TCGAGATATATGATGATCCACTGC 57.858 41.667 0.00 0.00 0.00 4.40
2830 4813 5.068329 TCGAGATATATGATGATCCACTGCC 59.932 44.000 0.00 0.00 0.00 4.85
2831 4814 5.068855 CGAGATATATGATGATCCACTGCCT 59.931 44.000 0.00 0.00 0.00 4.75
2832 4815 6.406737 CGAGATATATGATGATCCACTGCCTT 60.407 42.308 0.00 0.00 0.00 4.35
2833 4816 6.651086 AGATATATGATGATCCACTGCCTTG 58.349 40.000 0.00 0.00 0.00 3.61
2834 4817 4.987963 ATATGATGATCCACTGCCTTGA 57.012 40.909 0.00 0.00 0.00 3.02
2835 4818 2.408271 TGATGATCCACTGCCTTGAC 57.592 50.000 0.00 0.00 0.00 3.18
2836 4819 1.911357 TGATGATCCACTGCCTTGACT 59.089 47.619 0.00 0.00 0.00 3.41
2837 4820 2.286872 GATGATCCACTGCCTTGACTG 58.713 52.381 0.00 0.00 0.00 3.51
2838 4821 1.059098 TGATCCACTGCCTTGACTGT 58.941 50.000 0.00 0.00 0.00 3.55
2839 4822 2.256306 TGATCCACTGCCTTGACTGTA 58.744 47.619 0.00 0.00 0.00 2.74
2840 4823 2.637382 TGATCCACTGCCTTGACTGTAA 59.363 45.455 0.00 0.00 0.00 2.41
2841 4824 3.072330 TGATCCACTGCCTTGACTGTAAA 59.928 43.478 0.00 0.00 0.00 2.01
2842 4825 3.788227 TCCACTGCCTTGACTGTAAAT 57.212 42.857 0.00 0.00 0.00 1.40
2843 4826 3.411446 TCCACTGCCTTGACTGTAAATG 58.589 45.455 0.00 0.00 0.00 2.32
2844 4827 2.489329 CCACTGCCTTGACTGTAAATGG 59.511 50.000 0.00 0.00 0.00 3.16
2845 4828 3.411446 CACTGCCTTGACTGTAAATGGA 58.589 45.455 0.00 0.00 0.00 3.41
2846 4829 3.820467 CACTGCCTTGACTGTAAATGGAA 59.180 43.478 0.00 0.00 0.00 3.53
2847 4830 3.821033 ACTGCCTTGACTGTAAATGGAAC 59.179 43.478 0.00 0.00 0.00 3.62
2848 4831 2.811431 TGCCTTGACTGTAAATGGAACG 59.189 45.455 0.00 0.00 0.00 3.95
2849 4832 3.071479 GCCTTGACTGTAAATGGAACGA 58.929 45.455 0.00 0.00 0.00 3.85
2850 4833 3.500680 GCCTTGACTGTAAATGGAACGAA 59.499 43.478 0.00 0.00 0.00 3.85
2851 4834 4.156008 GCCTTGACTGTAAATGGAACGAAT 59.844 41.667 0.00 0.00 0.00 3.34
2852 4835 5.631026 CCTTGACTGTAAATGGAACGAATG 58.369 41.667 0.00 0.00 0.00 2.67
2853 4836 4.678509 TGACTGTAAATGGAACGAATGC 57.321 40.909 0.00 0.00 0.00 3.56
2854 4837 4.068599 TGACTGTAAATGGAACGAATGCA 58.931 39.130 0.00 0.00 0.00 3.96
2855 4838 4.154015 TGACTGTAAATGGAACGAATGCAG 59.846 41.667 0.00 0.00 30.55 4.41
2856 4839 3.440173 ACTGTAAATGGAACGAATGCAGG 59.560 43.478 0.00 0.00 30.55 4.85
2857 4840 2.752354 TGTAAATGGAACGAATGCAGGG 59.248 45.455 0.00 0.00 30.55 4.45
2858 4841 2.214376 AAATGGAACGAATGCAGGGA 57.786 45.000 0.00 0.00 30.55 4.20
2859 4842 2.214376 AATGGAACGAATGCAGGGAA 57.786 45.000 0.00 0.00 30.55 3.97
2860 4843 2.442236 ATGGAACGAATGCAGGGAAT 57.558 45.000 0.00 0.00 30.55 3.01
2861 4844 2.214376 TGGAACGAATGCAGGGAATT 57.786 45.000 0.00 0.00 0.00 2.17
2862 4845 3.358111 TGGAACGAATGCAGGGAATTA 57.642 42.857 0.00 0.00 0.00 1.40
2863 4846 3.691575 TGGAACGAATGCAGGGAATTAA 58.308 40.909 0.00 0.00 0.00 1.40
2864 4847 4.082845 TGGAACGAATGCAGGGAATTAAA 58.917 39.130 0.00 0.00 0.00 1.52
2865 4848 4.082463 TGGAACGAATGCAGGGAATTAAAC 60.082 41.667 0.00 0.00 0.00 2.01
2866 4849 4.157840 GGAACGAATGCAGGGAATTAAACT 59.842 41.667 0.00 0.00 0.00 2.66
2867 4850 4.701956 ACGAATGCAGGGAATTAAACTG 57.298 40.909 0.00 0.00 35.40 3.16
2868 4851 4.079253 ACGAATGCAGGGAATTAAACTGT 58.921 39.130 0.00 0.00 34.79 3.55
2869 4852 4.082787 ACGAATGCAGGGAATTAAACTGTG 60.083 41.667 0.00 0.00 34.79 3.66
2870 4853 4.155826 CGAATGCAGGGAATTAAACTGTGA 59.844 41.667 0.00 0.00 34.79 3.58
2871 4854 5.163622 CGAATGCAGGGAATTAAACTGTGAT 60.164 40.000 0.00 0.00 34.79 3.06
2872 4855 5.587388 ATGCAGGGAATTAAACTGTGATG 57.413 39.130 0.00 0.00 34.79 3.07
2873 4856 3.193267 TGCAGGGAATTAAACTGTGATGC 59.807 43.478 0.00 0.00 34.79 3.91
2874 4857 3.445096 GCAGGGAATTAAACTGTGATGCT 59.555 43.478 0.00 0.00 34.79 3.79
2875 4858 4.082026 GCAGGGAATTAAACTGTGATGCTT 60.082 41.667 0.00 0.00 34.79 3.91
2876 4859 5.125417 GCAGGGAATTAAACTGTGATGCTTA 59.875 40.000 0.00 0.00 34.79 3.09
2877 4860 6.555315 CAGGGAATTAAACTGTGATGCTTAC 58.445 40.000 0.00 0.00 0.00 2.34
2878 4861 5.354234 AGGGAATTAAACTGTGATGCTTACG 59.646 40.000 0.00 0.00 0.00 3.18
2879 4862 5.123344 GGGAATTAAACTGTGATGCTTACGT 59.877 40.000 0.00 0.00 0.00 3.57
2880 4863 6.021596 GGAATTAAACTGTGATGCTTACGTG 58.978 40.000 0.00 0.00 0.00 4.49
2881 4864 6.128391 GGAATTAAACTGTGATGCTTACGTGA 60.128 38.462 0.00 0.00 0.00 4.35
2882 4865 6.985188 ATTAAACTGTGATGCTTACGTGAT 57.015 33.333 0.00 0.00 0.00 3.06
2883 4866 4.928661 AAACTGTGATGCTTACGTGATC 57.071 40.909 0.00 0.00 0.00 2.92
2884 4867 2.530177 ACTGTGATGCTTACGTGATCG 58.470 47.619 0.00 0.00 43.34 3.69
2885 4868 1.854743 CTGTGATGCTTACGTGATCGG 59.145 52.381 0.00 0.00 41.85 4.18
2886 4869 1.474879 TGTGATGCTTACGTGATCGGA 59.525 47.619 0.00 0.00 41.85 4.55
2887 4870 2.094442 TGTGATGCTTACGTGATCGGAA 60.094 45.455 0.00 0.00 41.85 4.30
2888 4871 3.123804 GTGATGCTTACGTGATCGGAAT 58.876 45.455 0.00 0.00 39.28 3.01
2889 4872 3.060272 GTGATGCTTACGTGATCGGAATG 60.060 47.826 0.00 0.00 39.28 2.67
2890 4873 2.665649 TGCTTACGTGATCGGAATGT 57.334 45.000 0.00 0.00 39.28 2.71
2891 4874 2.967362 TGCTTACGTGATCGGAATGTT 58.033 42.857 0.00 0.00 39.28 2.71
2892 4875 2.670905 TGCTTACGTGATCGGAATGTTG 59.329 45.455 0.00 0.00 39.28 3.33
2893 4876 2.030457 GCTTACGTGATCGGAATGTTGG 59.970 50.000 0.00 0.00 39.28 3.77
2894 4877 3.517602 CTTACGTGATCGGAATGTTGGA 58.482 45.455 0.00 0.00 39.28 3.53
2895 4878 2.465860 ACGTGATCGGAATGTTGGAA 57.534 45.000 0.00 0.00 41.85 3.53
2896 4879 2.073816 ACGTGATCGGAATGTTGGAAC 58.926 47.619 0.00 0.00 41.85 3.62
2897 4880 1.060553 CGTGATCGGAATGTTGGAACG 59.939 52.381 0.00 0.00 0.00 3.95
2898 4881 1.083489 TGATCGGAATGTTGGAACGC 58.917 50.000 0.00 0.00 0.00 4.84
2899 4882 0.377203 GATCGGAATGTTGGAACGCC 59.623 55.000 0.00 0.00 0.00 5.68
2900 4883 0.322098 ATCGGAATGTTGGAACGCCA 60.322 50.000 0.00 0.00 44.17 5.69
2901 4884 0.322098 TCGGAATGTTGGAACGCCAT 60.322 50.000 0.00 0.00 45.46 4.40
2902 4885 0.098728 CGGAATGTTGGAACGCCATC 59.901 55.000 0.00 0.00 45.46 3.51
2903 4886 1.463674 GGAATGTTGGAACGCCATCT 58.536 50.000 0.00 0.00 45.46 2.90
2904 4887 1.818674 GGAATGTTGGAACGCCATCTT 59.181 47.619 0.00 0.00 45.46 2.40
2905 4888 2.231235 GGAATGTTGGAACGCCATCTTT 59.769 45.455 0.00 0.00 45.46 2.52
2906 4889 3.244976 GAATGTTGGAACGCCATCTTTG 58.755 45.455 0.00 0.00 45.46 2.77
2907 4890 0.958091 TGTTGGAACGCCATCTTTGG 59.042 50.000 0.00 0.00 45.46 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 5.641789 TCAAGATCCACCAATCATCAGAT 57.358 39.130 0.00 0.00 35.53 2.90
20 21 5.618236 GATCAAGATCCACCAATCATCAGA 58.382 41.667 0.00 0.00 31.76 3.27
21 22 5.943706 GATCAAGATCCACCAATCATCAG 57.056 43.478 0.00 0.00 31.76 2.90
40 49 1.070309 CCGCTACGTACGTACTGGATC 60.070 57.143 26.09 8.48 0.00 3.36
96 105 1.202203 GCACACGCGTCCGATAATTA 58.798 50.000 9.86 0.00 38.29 1.40
98 107 1.881252 GGCACACGCGTCCGATAAT 60.881 57.895 9.86 0.00 39.92 1.28
99 108 2.507547 GGCACACGCGTCCGATAA 60.508 61.111 9.86 0.00 39.92 1.75
167 176 4.329545 GTGTGGCTGCCGGGAAGA 62.330 66.667 14.98 0.00 0.00 2.87
210 219 1.521681 GATTCGGTTGGCTCCTCGG 60.522 63.158 0.00 0.00 0.00 4.63
377 386 6.250951 GCTTAGTTTACTTAGCTGACGTACAG 59.749 42.308 12.29 9.73 43.17 2.74
378 387 6.088824 GCTTAGTTTACTTAGCTGACGTACA 58.911 40.000 12.29 0.00 43.17 2.90
417 426 5.858581 CACTGCCAATCTTAGTTTACTTTGC 59.141 40.000 0.00 0.00 0.00 3.68
418 427 6.857964 CACACTGCCAATCTTAGTTTACTTTG 59.142 38.462 0.00 0.00 0.00 2.77
419 428 6.515035 GCACACTGCCAATCTTAGTTTACTTT 60.515 38.462 0.00 0.00 37.42 2.66
551 580 3.589654 TTCTTGGACCGGAGCAGCG 62.590 63.158 9.46 0.00 0.00 5.18
570 599 2.637025 CCCGTCAAAACAGTGCCG 59.363 61.111 0.00 0.00 0.00 5.69
596 625 4.927782 TTGCCTTGCGTGCCGTCT 62.928 61.111 0.00 0.00 0.00 4.18
597 626 4.389576 CTTGCCTTGCGTGCCGTC 62.390 66.667 0.00 0.00 0.00 4.79
716 746 0.365523 CGTGACAATTGTACGGCTCG 59.634 55.000 22.18 14.76 34.43 5.03
751 781 4.737476 AGCCAGCCCTGCTCCTCT 62.737 66.667 0.00 0.00 36.40 3.69
810 840 1.425412 GCAGTTATATACGTGGGCGG 58.575 55.000 0.00 0.00 43.45 6.13
814 844 2.549349 GGGTGGGCAGTTATATACGTGG 60.549 54.545 0.00 0.00 0.00 4.94
816 846 1.342174 CGGGTGGGCAGTTATATACGT 59.658 52.381 0.00 0.00 0.00 3.57
908 940 1.003839 TGCCAGCCGAACCTAGTTG 60.004 57.895 0.00 0.00 0.00 3.16
969 1001 4.317444 TACCCAACCCGTGCACCG 62.317 66.667 12.15 4.47 0.00 4.94
970 1002 2.359478 CTACCCAACCCGTGCACC 60.359 66.667 12.15 0.00 0.00 5.01
971 1003 3.053896 GCTACCCAACCCGTGCAC 61.054 66.667 6.82 6.82 0.00 4.57
972 1004 2.419011 AATGCTACCCAACCCGTGCA 62.419 55.000 0.00 0.00 34.88 4.57
973 1005 1.654023 GAATGCTACCCAACCCGTGC 61.654 60.000 0.00 0.00 0.00 5.34
974 1006 1.366111 CGAATGCTACCCAACCCGTG 61.366 60.000 0.00 0.00 0.00 4.94
975 1007 1.078708 CGAATGCTACCCAACCCGT 60.079 57.895 0.00 0.00 0.00 5.28
976 1008 1.817941 CCGAATGCTACCCAACCCG 60.818 63.158 0.00 0.00 0.00 5.28
977 1009 0.323087 AACCGAATGCTACCCAACCC 60.323 55.000 0.00 0.00 0.00 4.11
978 1010 2.285977 CTAACCGAATGCTACCCAACC 58.714 52.381 0.00 0.00 0.00 3.77
979 1011 1.669265 GCTAACCGAATGCTACCCAAC 59.331 52.381 0.00 0.00 0.00 3.77
980 1012 1.279558 TGCTAACCGAATGCTACCCAA 59.720 47.619 0.00 0.00 0.00 4.12
987 1019 0.041839 CGCTCATGCTAACCGAATGC 60.042 55.000 0.00 0.00 36.97 3.56
993 1025 0.178068 TTCCCTCGCTCATGCTAACC 59.822 55.000 0.00 0.00 36.97 2.85
995 1027 0.179111 CGTTCCCTCGCTCATGCTAA 60.179 55.000 0.00 0.00 36.97 3.09
997 1029 2.185350 CGTTCCCTCGCTCATGCT 59.815 61.111 0.00 0.00 36.97 3.79
1008 1043 2.107141 CTCATCTCCCGCGTTCCC 59.893 66.667 4.92 0.00 0.00 3.97
1011 1046 4.514577 CGCCTCATCTCCCGCGTT 62.515 66.667 4.92 0.00 39.78 4.84
1084 1119 3.730761 GATGCCGATGCCGATGCC 61.731 66.667 0.00 0.00 38.22 4.40
1085 1120 4.081030 CGATGCCGATGCCGATGC 62.081 66.667 0.00 0.00 38.22 3.91
1086 1121 4.081030 GCGATGCCGATGCCGATG 62.081 66.667 0.00 0.00 38.22 3.84
2053 4019 1.202154 ACGTCGCTTCTGAACCGATAG 60.202 52.381 10.60 10.30 33.24 2.08
2055 4021 0.732880 CACGTCGCTTCTGAACCGAT 60.733 55.000 10.60 0.00 33.24 4.18
2056 4022 1.371267 CACGTCGCTTCTGAACCGA 60.371 57.895 3.82 3.82 0.00 4.69
2089 4056 3.859443 AGCAAGTCTGAATCTGTAGCTG 58.141 45.455 0.00 0.00 0.00 4.24
2095 4062 4.240888 TCGAAAGAGCAAGTCTGAATCTG 58.759 43.478 0.00 0.00 34.84 2.90
2096 4063 4.527509 TCGAAAGAGCAAGTCTGAATCT 57.472 40.909 0.00 0.00 34.84 2.40
2134 4102 7.606839 AGGAGTAGTTTATTTCAGGTAAGTTGC 59.393 37.037 0.00 0.00 0.00 4.17
2158 4126 5.954752 TTCAGCCATGAGATCCTACTATAGG 59.045 44.000 4.43 0.00 41.13 2.57
2160 4128 8.441311 AAATTCAGCCATGAGATCCTACTATA 57.559 34.615 0.00 0.00 36.61 1.31
2172 4140 3.972133 AGGTCATGAAATTCAGCCATGA 58.028 40.909 13.60 0.00 42.84 3.07
2173 4141 4.260907 CGTAGGTCATGAAATTCAGCCATG 60.261 45.833 13.60 0.00 39.08 3.66
2174 4142 3.879295 CGTAGGTCATGAAATTCAGCCAT 59.121 43.478 13.60 0.96 0.00 4.40
2175 4143 3.270027 CGTAGGTCATGAAATTCAGCCA 58.730 45.455 13.60 0.00 0.00 4.75
2176 4144 2.032178 GCGTAGGTCATGAAATTCAGCC 59.968 50.000 0.00 4.10 0.00 4.85
2179 4147 3.342377 TGGCGTAGGTCATGAAATTCA 57.658 42.857 0.00 0.00 0.00 2.57
2187 4155 1.768275 TCAATCCATGGCGTAGGTCAT 59.232 47.619 6.96 0.00 39.62 3.06
2188 4156 1.199615 TCAATCCATGGCGTAGGTCA 58.800 50.000 6.96 0.00 0.00 4.02
2189 4157 2.549754 CAATCAATCCATGGCGTAGGTC 59.450 50.000 6.96 0.00 0.00 3.85
2190 4158 2.172505 TCAATCAATCCATGGCGTAGGT 59.827 45.455 6.96 0.00 0.00 3.08
2191 4159 2.849942 TCAATCAATCCATGGCGTAGG 58.150 47.619 6.96 0.00 0.00 3.18
2192 4160 4.516321 TCAATCAATCAATCCATGGCGTAG 59.484 41.667 6.96 0.00 0.00 3.51
2193 4161 4.459330 TCAATCAATCAATCCATGGCGTA 58.541 39.130 6.96 0.00 0.00 4.42
2194 4162 3.289836 TCAATCAATCAATCCATGGCGT 58.710 40.909 6.96 0.00 0.00 5.68
2195 4163 3.994204 TCAATCAATCAATCCATGGCG 57.006 42.857 6.96 0.00 0.00 5.69
2196 4164 6.014840 AGGTAATCAATCAATCAATCCATGGC 60.015 38.462 6.96 0.00 0.00 4.40
2197 4165 7.534723 AGGTAATCAATCAATCAATCCATGG 57.465 36.000 4.97 4.97 0.00 3.66
2199 4167 9.872684 ACTAAGGTAATCAATCAATCAATCCAT 57.127 29.630 0.00 0.00 0.00 3.41
2200 4168 9.699410 AACTAAGGTAATCAATCAATCAATCCA 57.301 29.630 0.00 0.00 0.00 3.41
2205 4173 9.699410 ATGGAAACTAAGGTAATCAATCAATCA 57.301 29.630 0.00 0.00 0.00 2.57
2210 4178 8.433421 TCGAATGGAAACTAAGGTAATCAATC 57.567 34.615 0.00 0.00 0.00 2.67
2223 4191 1.482593 AGATCGCCTCGAATGGAAACT 59.517 47.619 0.00 0.00 39.99 2.66
2233 4201 1.664017 CAGCCATGAGATCGCCTCG 60.664 63.158 0.00 0.00 44.92 4.63
2253 4221 0.524816 TCGACGCCGATGCTAGAAAC 60.525 55.000 0.00 0.00 40.30 2.78
2290 4258 4.292178 GAGGGAGGAGCGATGCCG 62.292 72.222 0.00 0.00 39.16 5.69
2291 4259 3.934962 GGAGGGAGGAGCGATGCC 61.935 72.222 0.00 0.00 0.00 4.40
2292 4260 3.934962 GGGAGGGAGGAGCGATGC 61.935 72.222 0.00 0.00 0.00 3.91
2293 4261 2.123077 AGGGAGGGAGGAGCGATG 60.123 66.667 0.00 0.00 0.00 3.84
2294 4262 2.123077 CAGGGAGGGAGGAGCGAT 60.123 66.667 0.00 0.00 0.00 4.58
2295 4263 3.663815 GACAGGGAGGGAGGAGCGA 62.664 68.421 0.00 0.00 0.00 4.93
2296 4264 3.151022 GACAGGGAGGGAGGAGCG 61.151 72.222 0.00 0.00 0.00 5.03
2297 4265 2.766229 GGACAGGGAGGGAGGAGC 60.766 72.222 0.00 0.00 0.00 4.70
2298 4266 1.075600 GAGGACAGGGAGGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
2299 4267 2.637640 GGAGGACAGGGAGGGAGGA 61.638 68.421 0.00 0.00 0.00 3.71
2300 4268 2.041405 GGAGGACAGGGAGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
2301 4269 2.443016 CGGAGGACAGGGAGGGAG 60.443 72.222 0.00 0.00 0.00 4.30
2302 4270 4.779733 GCGGAGGACAGGGAGGGA 62.780 72.222 0.00 0.00 0.00 4.20
2305 4273 3.827898 GACGCGGAGGACAGGGAG 61.828 72.222 12.47 0.00 0.00 4.30
2306 4274 4.361971 AGACGCGGAGGACAGGGA 62.362 66.667 12.47 0.00 0.00 4.20
2307 4275 4.135153 CAGACGCGGAGGACAGGG 62.135 72.222 12.47 0.00 0.00 4.45
2308 4276 4.135153 CCAGACGCGGAGGACAGG 62.135 72.222 12.47 0.00 0.00 4.00
2309 4277 3.374402 ACCAGACGCGGAGGACAG 61.374 66.667 18.57 0.00 0.00 3.51
2310 4278 3.680786 CACCAGACGCGGAGGACA 61.681 66.667 18.57 0.00 0.00 4.02
2311 4279 3.343788 CTCACCAGACGCGGAGGAC 62.344 68.421 18.57 1.65 0.00 3.85
2312 4280 3.062466 CTCACCAGACGCGGAGGA 61.062 66.667 18.57 3.34 0.00 3.71
2313 4281 4.803426 GCTCACCAGACGCGGAGG 62.803 72.222 12.47 11.87 0.00 4.30
2314 4282 4.803426 GGCTCACCAGACGCGGAG 62.803 72.222 12.47 7.29 35.26 4.63
2323 4291 1.371183 CCGAAGAAGTGGCTCACCA 59.629 57.895 2.18 0.00 46.51 4.17
2324 4292 0.250338 AACCGAAGAAGTGGCTCACC 60.250 55.000 2.18 0.00 34.49 4.02
2325 4293 1.149148 GAACCGAAGAAGTGGCTCAC 58.851 55.000 0.00 0.00 34.10 3.51
2326 4294 0.756294 TGAACCGAAGAAGTGGCTCA 59.244 50.000 0.00 0.00 0.00 4.26
2327 4295 1.734465 CATGAACCGAAGAAGTGGCTC 59.266 52.381 0.00 0.00 0.00 4.70
2328 4296 1.347707 TCATGAACCGAAGAAGTGGCT 59.652 47.619 0.00 0.00 0.00 4.75
2329 4297 1.464997 GTCATGAACCGAAGAAGTGGC 59.535 52.381 0.00 0.00 0.00 5.01
2330 4298 2.738846 CTGTCATGAACCGAAGAAGTGG 59.261 50.000 0.00 0.00 0.00 4.00
2331 4299 3.430218 GTCTGTCATGAACCGAAGAAGTG 59.570 47.826 0.00 0.00 0.00 3.16
2332 4300 3.069586 TGTCTGTCATGAACCGAAGAAGT 59.930 43.478 0.00 0.00 0.00 3.01
2333 4301 3.653344 TGTCTGTCATGAACCGAAGAAG 58.347 45.455 0.00 0.00 0.00 2.85
2334 4302 3.744238 TGTCTGTCATGAACCGAAGAA 57.256 42.857 0.00 0.00 0.00 2.52
2335 4303 3.744238 TTGTCTGTCATGAACCGAAGA 57.256 42.857 0.00 0.00 0.00 2.87
2336 4304 4.378770 CCATTTGTCTGTCATGAACCGAAG 60.379 45.833 0.00 0.00 0.00 3.79
2337 4305 3.501828 CCATTTGTCTGTCATGAACCGAA 59.498 43.478 0.00 0.00 0.00 4.30
2338 4306 3.073678 CCATTTGTCTGTCATGAACCGA 58.926 45.455 0.00 0.00 0.00 4.69
2339 4307 3.073678 TCCATTTGTCTGTCATGAACCG 58.926 45.455 0.00 0.00 0.00 4.44
2340 4308 3.820467 TGTCCATTTGTCTGTCATGAACC 59.180 43.478 0.00 0.00 0.00 3.62
2341 4309 5.215160 GTTGTCCATTTGTCTGTCATGAAC 58.785 41.667 0.00 0.00 0.00 3.18
2342 4310 4.886489 TGTTGTCCATTTGTCTGTCATGAA 59.114 37.500 0.00 0.00 0.00 2.57
2343 4311 4.459330 TGTTGTCCATTTGTCTGTCATGA 58.541 39.130 0.00 0.00 0.00 3.07
2344 4312 4.516321 TCTGTTGTCCATTTGTCTGTCATG 59.484 41.667 0.00 0.00 0.00 3.07
2384 4352 2.125188 TGCATGGCAGATTCGCGA 60.125 55.556 3.71 3.71 33.32 5.87
2385 4353 2.023741 GTGCATGGCAGATTCGCG 59.976 61.111 0.00 0.00 40.08 5.87
2389 4357 0.038599 TGACTGGTGCATGGCAGATT 59.961 50.000 0.00 0.00 40.08 2.40
2395 4363 0.528924 CAATGGTGACTGGTGCATGG 59.471 55.000 0.00 0.00 0.00 3.66
2403 4371 5.245531 TCTACCTTTAAGCAATGGTGACTG 58.754 41.667 5.00 0.00 41.14 3.51
2406 4374 5.007682 GGTTCTACCTTTAAGCAATGGTGA 58.992 41.667 5.00 0.00 41.14 4.02
2417 4385 3.890756 TGACGACAGTGGTTCTACCTTTA 59.109 43.478 0.00 0.00 39.58 1.85
2439 4407 2.094957 GCCTAGCTATTCGATCGAGCTT 60.095 50.000 28.28 16.25 44.08 3.74
2451 4419 2.826488 CCATCACCTAGGCCTAGCTAT 58.174 52.381 31.33 20.51 31.95 2.97
2454 4422 1.373059 GCCATCACCTAGGCCTAGC 59.627 63.158 31.33 17.13 45.18 3.42
2464 4432 0.249322 GCAATGCATCAGCCATCACC 60.249 55.000 11.84 0.00 41.13 4.02
2467 4435 1.007734 CCGCAATGCATCAGCCATC 60.008 57.895 15.85 0.00 41.13 3.51
2472 4440 4.918129 GCCGCCGCAATGCATCAG 62.918 66.667 5.91 0.00 34.03 2.90
2538 4506 0.034198 TCTGAATTCCGAACGTGCCA 59.966 50.000 2.27 0.00 0.00 4.92
2540 4508 1.429463 ACTCTGAATTCCGAACGTGC 58.571 50.000 2.27 0.00 0.00 5.34
2544 4512 7.596749 TTATCTGAAACTCTGAATTCCGAAC 57.403 36.000 2.27 0.00 0.00 3.95
2548 4516 7.752686 GCACTTTTATCTGAAACTCTGAATTCC 59.247 37.037 2.27 0.00 0.00 3.01
2569 4537 2.455674 TACAAGCATCGACAGCACTT 57.544 45.000 13.43 0.00 0.00 3.16
2570 4538 2.289072 ACTTACAAGCATCGACAGCACT 60.289 45.455 13.43 0.00 0.00 4.40
2571 4539 2.069273 ACTTACAAGCATCGACAGCAC 58.931 47.619 13.43 0.00 0.00 4.40
2572 4540 2.068519 CACTTACAAGCATCGACAGCA 58.931 47.619 13.43 0.00 0.00 4.41
2573 4541 2.337583 TCACTTACAAGCATCGACAGC 58.662 47.619 3.61 3.61 0.00 4.40
2574 4542 3.242220 GCATCACTTACAAGCATCGACAG 60.242 47.826 0.00 0.00 0.00 3.51
2575 4543 2.672874 GCATCACTTACAAGCATCGACA 59.327 45.455 0.00 0.00 0.00 4.35
2576 4544 2.030946 GGCATCACTTACAAGCATCGAC 59.969 50.000 0.00 0.00 0.00 4.20
2577 4545 2.279741 GGCATCACTTACAAGCATCGA 58.720 47.619 0.00 0.00 0.00 3.59
2578 4546 1.004610 CGGCATCACTTACAAGCATCG 60.005 52.381 0.00 0.00 0.00 3.84
2579 4547 2.009774 ACGGCATCACTTACAAGCATC 58.990 47.619 0.00 0.00 0.00 3.91
2580 4548 2.113860 ACGGCATCACTTACAAGCAT 57.886 45.000 0.00 0.00 0.00 3.79
2581 4549 1.535028 CAACGGCATCACTTACAAGCA 59.465 47.619 0.00 0.00 0.00 3.91
2582 4550 1.729149 GCAACGGCATCACTTACAAGC 60.729 52.381 0.00 0.00 40.72 4.01
2583 4551 2.247311 GCAACGGCATCACTTACAAG 57.753 50.000 0.00 0.00 40.72 3.16
2602 4570 2.203209 GCTTGGGTAGGCGGGATG 60.203 66.667 0.00 0.00 0.00 3.51
2664 4647 7.042950 TGGCAACTTATTTTCCATCATTGATG 58.957 34.615 18.00 18.00 37.35 3.07
2665 4648 7.093201 ACTGGCAACTTATTTTCCATCATTGAT 60.093 33.333 0.00 0.00 37.61 2.57
2666 4649 6.211184 ACTGGCAACTTATTTTCCATCATTGA 59.789 34.615 0.00 0.00 37.61 2.57
2672 4655 8.644374 TTAGTTACTGGCAACTTATTTTCCAT 57.356 30.769 0.00 0.00 39.45 3.41
2681 4664 9.765795 CTTATATAGCTTAGTTACTGGCAACTT 57.234 33.333 12.74 0.00 39.45 2.66
2682 4665 9.144298 TCTTATATAGCTTAGTTACTGGCAACT 57.856 33.333 12.74 0.00 41.56 3.16
2683 4666 9.760077 TTCTTATATAGCTTAGTTACTGGCAAC 57.240 33.333 12.74 0.00 0.00 4.17
2684 4667 9.982651 CTTCTTATATAGCTTAGTTACTGGCAA 57.017 33.333 12.74 1.55 0.00 4.52
2685 4668 8.585881 CCTTCTTATATAGCTTAGTTACTGGCA 58.414 37.037 12.74 0.00 0.00 4.92
2686 4669 8.586744 ACCTTCTTATATAGCTTAGTTACTGGC 58.413 37.037 0.00 0.00 0.00 4.85
2687 4670 9.915629 CACCTTCTTATATAGCTTAGTTACTGG 57.084 37.037 0.00 0.00 0.00 4.00
2690 4673 9.911138 GGTCACCTTCTTATATAGCTTAGTTAC 57.089 37.037 0.00 0.00 0.00 2.50
2691 4674 9.086758 GGGTCACCTTCTTATATAGCTTAGTTA 57.913 37.037 0.00 0.00 0.00 2.24
2692 4675 7.964624 GGGTCACCTTCTTATATAGCTTAGTT 58.035 38.462 0.00 0.00 0.00 2.24
2693 4676 7.541916 GGGTCACCTTCTTATATAGCTTAGT 57.458 40.000 0.00 0.00 0.00 2.24
2710 4693 1.049402 GGCAGATACCTAGGGTCACC 58.951 60.000 14.81 12.15 37.09 4.02
2711 4694 1.789523 TGGCAGATACCTAGGGTCAC 58.210 55.000 14.81 7.23 37.09 3.67
2712 4695 2.329267 CATGGCAGATACCTAGGGTCA 58.671 52.381 14.81 2.34 37.09 4.02
2713 4696 1.625818 CCATGGCAGATACCTAGGGTC 59.374 57.143 14.81 10.91 37.09 4.46
2714 4697 1.734655 CCATGGCAGATACCTAGGGT 58.265 55.000 14.81 0.33 40.16 4.34
2715 4698 0.326264 GCCATGGCAGATACCTAGGG 59.674 60.000 32.08 0.00 41.49 3.53
2716 4699 1.277557 GAGCCATGGCAGATACCTAGG 59.722 57.143 37.18 7.41 44.88 3.02
2717 4700 2.233431 GAGAGCCATGGCAGATACCTAG 59.767 54.545 37.18 0.00 44.88 3.02
2718 4701 2.158249 AGAGAGCCATGGCAGATACCTA 60.158 50.000 37.18 0.00 44.88 3.08
2719 4702 1.055040 GAGAGCCATGGCAGATACCT 58.945 55.000 37.18 22.05 44.88 3.08
2720 4703 1.055040 AGAGAGCCATGGCAGATACC 58.945 55.000 37.18 19.09 44.88 2.73
2721 4704 3.323403 ACTTAGAGAGCCATGGCAGATAC 59.677 47.826 37.18 21.97 44.88 2.24
2722 4705 3.581101 ACTTAGAGAGCCATGGCAGATA 58.419 45.455 37.18 20.81 44.88 1.98
2723 4706 2.406559 ACTTAGAGAGCCATGGCAGAT 58.593 47.619 37.18 22.61 44.88 2.90
2724 4707 1.871418 ACTTAGAGAGCCATGGCAGA 58.129 50.000 37.18 15.07 44.88 4.26
2725 4708 2.706339 AACTTAGAGAGCCATGGCAG 57.294 50.000 37.18 25.85 44.88 4.85
2726 4709 2.837591 TGTAACTTAGAGAGCCATGGCA 59.162 45.455 37.18 14.94 44.88 4.92
2727 4710 3.118592 ACTGTAACTTAGAGAGCCATGGC 60.119 47.826 30.12 30.12 42.33 4.40
2728 4711 4.744795 ACTGTAACTTAGAGAGCCATGG 57.255 45.455 7.63 7.63 0.00 3.66
2729 4712 7.223582 CACATAACTGTAACTTAGAGAGCCATG 59.776 40.741 0.06 0.00 33.14 3.66
2730 4713 7.268586 CACATAACTGTAACTTAGAGAGCCAT 58.731 38.462 0.06 0.00 33.14 4.40
2731 4714 6.351033 CCACATAACTGTAACTTAGAGAGCCA 60.351 42.308 0.06 0.00 33.14 4.75
2732 4715 6.043411 CCACATAACTGTAACTTAGAGAGCC 58.957 44.000 0.06 0.00 33.14 4.70
2733 4716 5.520649 GCCACATAACTGTAACTTAGAGAGC 59.479 44.000 0.06 0.00 33.14 4.09
2734 4717 5.744345 CGCCACATAACTGTAACTTAGAGAG 59.256 44.000 0.06 0.00 33.14 3.20
2735 4718 5.416639 TCGCCACATAACTGTAACTTAGAGA 59.583 40.000 0.06 0.00 33.14 3.10
2736 4719 5.647589 TCGCCACATAACTGTAACTTAGAG 58.352 41.667 0.00 0.00 33.14 2.43
2737 4720 5.648178 TCGCCACATAACTGTAACTTAGA 57.352 39.130 0.00 0.00 33.14 2.10
2738 4721 5.462398 GGATCGCCACATAACTGTAACTTAG 59.538 44.000 0.00 0.00 33.14 2.18
2739 4722 5.105269 TGGATCGCCACATAACTGTAACTTA 60.105 40.000 0.00 0.00 39.92 2.24
2740 4723 4.189231 GGATCGCCACATAACTGTAACTT 58.811 43.478 0.00 0.00 33.14 2.66
2741 4724 3.196901 TGGATCGCCACATAACTGTAACT 59.803 43.478 0.00 0.00 39.92 2.24
2742 4725 3.527533 TGGATCGCCACATAACTGTAAC 58.472 45.455 0.00 0.00 39.92 2.50
2743 4726 3.897141 TGGATCGCCACATAACTGTAA 57.103 42.857 0.00 0.00 39.92 2.41
2755 4738 0.107214 TGAAGGACCAATGGATCGCC 60.107 55.000 6.16 1.55 0.00 5.54
2756 4739 1.672881 CTTGAAGGACCAATGGATCGC 59.327 52.381 6.16 0.00 0.00 4.58
2757 4740 2.292267 CCTTGAAGGACCAATGGATCG 58.708 52.381 4.95 0.00 37.67 3.69
2758 4741 2.027385 GCCTTGAAGGACCAATGGATC 58.973 52.381 16.93 0.00 37.67 3.36
2759 4742 1.358787 TGCCTTGAAGGACCAATGGAT 59.641 47.619 16.93 0.00 37.67 3.41
2760 4743 0.776810 TGCCTTGAAGGACCAATGGA 59.223 50.000 16.93 0.00 37.67 3.41
2761 4744 1.856629 ATGCCTTGAAGGACCAATGG 58.143 50.000 16.93 0.00 37.67 3.16
2762 4745 3.243636 GCATATGCCTTGAAGGACCAATG 60.244 47.826 16.93 12.65 37.67 2.82
2763 4746 2.961062 GCATATGCCTTGAAGGACCAAT 59.039 45.455 16.93 5.00 37.67 3.16
2764 4747 2.291475 TGCATATGCCTTGAAGGACCAA 60.291 45.455 24.54 0.00 37.67 3.67
2765 4748 1.284491 TGCATATGCCTTGAAGGACCA 59.716 47.619 24.54 4.55 37.67 4.02
2766 4749 1.952296 CTGCATATGCCTTGAAGGACC 59.048 52.381 24.54 0.00 37.67 4.46
2767 4750 2.877168 CTCTGCATATGCCTTGAAGGAC 59.123 50.000 24.54 7.06 37.67 3.85
2768 4751 2.507058 ACTCTGCATATGCCTTGAAGGA 59.493 45.455 24.54 9.98 37.67 3.36
2769 4752 2.617308 CACTCTGCATATGCCTTGAAGG 59.383 50.000 24.54 6.92 41.18 3.46
2770 4753 2.617308 CCACTCTGCATATGCCTTGAAG 59.383 50.000 24.54 14.60 41.18 3.02
2771 4754 2.646930 CCACTCTGCATATGCCTTGAA 58.353 47.619 24.54 4.86 41.18 2.69
2772 4755 1.134007 CCCACTCTGCATATGCCTTGA 60.134 52.381 24.54 17.52 41.18 3.02
2773 4756 1.315690 CCCACTCTGCATATGCCTTG 58.684 55.000 24.54 15.60 41.18 3.61
2774 4757 0.921896 ACCCACTCTGCATATGCCTT 59.078 50.000 24.54 3.53 41.18 4.35
2775 4758 0.921896 AACCCACTCTGCATATGCCT 59.078 50.000 24.54 1.97 41.18 4.75
2776 4759 1.027357 CAACCCACTCTGCATATGCC 58.973 55.000 24.54 7.65 41.18 4.40
2777 4760 1.027357 CCAACCCACTCTGCATATGC 58.973 55.000 21.09 21.09 42.50 3.14
2778 4761 1.683943 CCCAACCCACTCTGCATATG 58.316 55.000 0.00 0.00 0.00 1.78
2779 4762 0.552848 CCCCAACCCACTCTGCATAT 59.447 55.000 0.00 0.00 0.00 1.78
2780 4763 1.998530 CCCCAACCCACTCTGCATA 59.001 57.895 0.00 0.00 0.00 3.14
2781 4764 2.765969 CCCCAACCCACTCTGCAT 59.234 61.111 0.00 0.00 0.00 3.96
2782 4765 4.284550 GCCCCAACCCACTCTGCA 62.285 66.667 0.00 0.00 0.00 4.41
2783 4766 3.808218 TTGCCCCAACCCACTCTGC 62.808 63.158 0.00 0.00 0.00 4.26
2784 4767 0.967380 GATTGCCCCAACCCACTCTG 60.967 60.000 0.00 0.00 0.00 3.35
2785 4768 1.384191 GATTGCCCCAACCCACTCT 59.616 57.895 0.00 0.00 0.00 3.24
2786 4769 1.682344 GGATTGCCCCAACCCACTC 60.682 63.158 0.00 0.00 24.85 3.51
2787 4770 1.739608 AAGGATTGCCCCAACCCACT 61.740 55.000 0.00 0.00 26.97 4.00
2788 4771 1.229177 AAGGATTGCCCCAACCCAC 60.229 57.895 0.00 0.00 26.97 4.61
2789 4772 1.078347 GAAGGATTGCCCCAACCCA 59.922 57.895 0.00 0.00 26.97 4.51
2790 4773 2.052104 CGAAGGATTGCCCCAACCC 61.052 63.158 0.00 0.00 34.66 4.11
2791 4774 1.001393 TCGAAGGATTGCCCCAACC 60.001 57.895 0.00 0.00 34.66 3.77
2792 4775 0.035439 TCTCGAAGGATTGCCCCAAC 60.035 55.000 0.00 0.00 34.66 3.77
2793 4776 0.918983 ATCTCGAAGGATTGCCCCAA 59.081 50.000 0.00 0.00 34.66 4.12
2794 4777 1.801242 TATCTCGAAGGATTGCCCCA 58.199 50.000 0.00 0.00 34.66 4.96
2795 4778 4.162320 TCATATATCTCGAAGGATTGCCCC 59.838 45.833 0.00 0.00 34.66 5.80
2796 4779 5.344743 TCATATATCTCGAAGGATTGCCC 57.655 43.478 0.00 0.00 33.31 5.36
2797 4780 6.577103 TCATCATATATCTCGAAGGATTGCC 58.423 40.000 0.00 0.00 0.00 4.52
2798 4781 7.384660 GGATCATCATATATCTCGAAGGATTGC 59.615 40.741 0.00 0.00 0.00 3.56
2799 4782 8.419442 TGGATCATCATATATCTCGAAGGATTG 58.581 37.037 0.00 0.00 0.00 2.67
2800 4783 8.420222 GTGGATCATCATATATCTCGAAGGATT 58.580 37.037 0.00 0.00 0.00 3.01
2801 4784 7.784073 AGTGGATCATCATATATCTCGAAGGAT 59.216 37.037 0.00 0.00 0.00 3.24
2802 4785 7.067981 CAGTGGATCATCATATATCTCGAAGGA 59.932 40.741 0.00 0.00 0.00 3.36
2803 4786 7.201835 CAGTGGATCATCATATATCTCGAAGG 58.798 42.308 0.00 0.00 0.00 3.46
2804 4787 6.696583 GCAGTGGATCATCATATATCTCGAAG 59.303 42.308 0.00 0.00 0.00 3.79
2805 4788 6.406288 GGCAGTGGATCATCATATATCTCGAA 60.406 42.308 0.00 0.00 0.00 3.71
2806 4789 5.068329 GGCAGTGGATCATCATATATCTCGA 59.932 44.000 0.00 0.00 0.00 4.04
2807 4790 5.068855 AGGCAGTGGATCATCATATATCTCG 59.931 44.000 0.00 0.00 0.00 4.04
2808 4791 6.482898 AGGCAGTGGATCATCATATATCTC 57.517 41.667 0.00 0.00 0.00 2.75
2809 4792 6.442885 TCAAGGCAGTGGATCATCATATATCT 59.557 38.462 0.00 0.00 0.00 1.98
2810 4793 6.538021 GTCAAGGCAGTGGATCATCATATATC 59.462 42.308 0.00 0.00 0.00 1.63
2811 4794 6.215023 AGTCAAGGCAGTGGATCATCATATAT 59.785 38.462 0.00 0.00 0.00 0.86
2812 4795 5.545335 AGTCAAGGCAGTGGATCATCATATA 59.455 40.000 0.00 0.00 0.00 0.86
2813 4796 4.350225 AGTCAAGGCAGTGGATCATCATAT 59.650 41.667 0.00 0.00 0.00 1.78
2814 4797 3.713248 AGTCAAGGCAGTGGATCATCATA 59.287 43.478 0.00 0.00 0.00 2.15
2815 4798 2.508716 AGTCAAGGCAGTGGATCATCAT 59.491 45.455 0.00 0.00 0.00 2.45
2816 4799 1.911357 AGTCAAGGCAGTGGATCATCA 59.089 47.619 0.00 0.00 0.00 3.07
2817 4800 2.286872 CAGTCAAGGCAGTGGATCATC 58.713 52.381 0.00 0.00 0.00 2.92
2818 4801 1.632409 ACAGTCAAGGCAGTGGATCAT 59.368 47.619 0.00 0.00 0.00 2.45
2819 4802 1.059098 ACAGTCAAGGCAGTGGATCA 58.941 50.000 0.00 0.00 0.00 2.92
2820 4803 3.334583 TTACAGTCAAGGCAGTGGATC 57.665 47.619 0.00 0.00 0.00 3.36
2821 4804 3.788227 TTTACAGTCAAGGCAGTGGAT 57.212 42.857 0.00 0.00 0.00 3.41
2822 4805 3.411446 CATTTACAGTCAAGGCAGTGGA 58.589 45.455 0.00 0.00 0.00 4.02
2823 4806 2.489329 CCATTTACAGTCAAGGCAGTGG 59.511 50.000 0.00 0.00 0.00 4.00
2824 4807 3.411446 TCCATTTACAGTCAAGGCAGTG 58.589 45.455 0.00 0.00 0.00 3.66
2825 4808 3.788227 TCCATTTACAGTCAAGGCAGT 57.212 42.857 0.00 0.00 0.00 4.40
2826 4809 3.120199 CGTTCCATTTACAGTCAAGGCAG 60.120 47.826 0.00 0.00 0.00 4.85
2827 4810 2.811431 CGTTCCATTTACAGTCAAGGCA 59.189 45.455 0.00 0.00 0.00 4.75
2828 4811 3.071479 TCGTTCCATTTACAGTCAAGGC 58.929 45.455 0.00 0.00 0.00 4.35
2829 4812 5.631026 CATTCGTTCCATTTACAGTCAAGG 58.369 41.667 0.00 0.00 0.00 3.61
2830 4813 5.088739 GCATTCGTTCCATTTACAGTCAAG 58.911 41.667 0.00 0.00 0.00 3.02
2831 4814 4.517075 TGCATTCGTTCCATTTACAGTCAA 59.483 37.500 0.00 0.00 0.00 3.18
2832 4815 4.068599 TGCATTCGTTCCATTTACAGTCA 58.931 39.130 0.00 0.00 0.00 3.41
2833 4816 4.437390 CCTGCATTCGTTCCATTTACAGTC 60.437 45.833 0.00 0.00 0.00 3.51
2834 4817 3.440173 CCTGCATTCGTTCCATTTACAGT 59.560 43.478 0.00 0.00 0.00 3.55
2835 4818 3.181497 CCCTGCATTCGTTCCATTTACAG 60.181 47.826 0.00 0.00 0.00 2.74
2836 4819 2.752354 CCCTGCATTCGTTCCATTTACA 59.248 45.455 0.00 0.00 0.00 2.41
2837 4820 3.013921 TCCCTGCATTCGTTCCATTTAC 58.986 45.455 0.00 0.00 0.00 2.01
2838 4821 3.358111 TCCCTGCATTCGTTCCATTTA 57.642 42.857 0.00 0.00 0.00 1.40
2839 4822 2.214376 TCCCTGCATTCGTTCCATTT 57.786 45.000 0.00 0.00 0.00 2.32
2840 4823 2.214376 TTCCCTGCATTCGTTCCATT 57.786 45.000 0.00 0.00 0.00 3.16
2841 4824 2.442236 ATTCCCTGCATTCGTTCCAT 57.558 45.000 0.00 0.00 0.00 3.41
2842 4825 2.214376 AATTCCCTGCATTCGTTCCA 57.786 45.000 0.00 0.00 0.00 3.53
2843 4826 4.157840 AGTTTAATTCCCTGCATTCGTTCC 59.842 41.667 0.00 0.00 0.00 3.62
2844 4827 5.095490 CAGTTTAATTCCCTGCATTCGTTC 58.905 41.667 0.00 0.00 0.00 3.95
2845 4828 4.522789 ACAGTTTAATTCCCTGCATTCGTT 59.477 37.500 0.00 0.00 0.00 3.85
2846 4829 4.079253 ACAGTTTAATTCCCTGCATTCGT 58.921 39.130 0.00 0.00 0.00 3.85
2847 4830 4.155826 TCACAGTTTAATTCCCTGCATTCG 59.844 41.667 0.00 0.00 0.00 3.34
2848 4831 5.643379 TCACAGTTTAATTCCCTGCATTC 57.357 39.130 0.00 0.00 0.00 2.67
2849 4832 5.625197 GCATCACAGTTTAATTCCCTGCATT 60.625 40.000 0.00 0.00 0.00 3.56
2850 4833 4.142093 GCATCACAGTTTAATTCCCTGCAT 60.142 41.667 0.00 0.00 0.00 3.96
2851 4834 3.193267 GCATCACAGTTTAATTCCCTGCA 59.807 43.478 0.00 0.00 0.00 4.41
2852 4835 3.445096 AGCATCACAGTTTAATTCCCTGC 59.555 43.478 0.00 0.00 0.00 4.85
2853 4836 5.649782 AAGCATCACAGTTTAATTCCCTG 57.350 39.130 0.00 0.00 0.00 4.45
2854 4837 5.354234 CGTAAGCATCACAGTTTAATTCCCT 59.646 40.000 0.00 0.00 0.00 4.20
2855 4838 5.123344 ACGTAAGCATCACAGTTTAATTCCC 59.877 40.000 0.00 0.00 45.62 3.97
2856 4839 6.021596 CACGTAAGCATCACAGTTTAATTCC 58.978 40.000 0.00 0.00 45.62 3.01
2857 4840 6.827641 TCACGTAAGCATCACAGTTTAATTC 58.172 36.000 0.00 0.00 45.62 2.17
2858 4841 6.795098 TCACGTAAGCATCACAGTTTAATT 57.205 33.333 0.00 0.00 45.62 1.40
2859 4842 6.237835 CGATCACGTAAGCATCACAGTTTAAT 60.238 38.462 0.00 0.00 45.62 1.40
2860 4843 5.061684 CGATCACGTAAGCATCACAGTTTAA 59.938 40.000 0.00 0.00 45.62 1.52
2861 4844 4.561213 CGATCACGTAAGCATCACAGTTTA 59.439 41.667 0.00 0.00 45.62 2.01
2862 4845 3.367932 CGATCACGTAAGCATCACAGTTT 59.632 43.478 0.00 0.00 45.62 2.66
2863 4846 2.923655 CGATCACGTAAGCATCACAGTT 59.076 45.455 0.00 0.00 45.62 3.16
2864 4847 2.530177 CGATCACGTAAGCATCACAGT 58.470 47.619 0.00 0.00 45.62 3.55
2865 4848 1.854743 CCGATCACGTAAGCATCACAG 59.145 52.381 0.00 0.00 45.62 3.66
2866 4849 1.474879 TCCGATCACGTAAGCATCACA 59.525 47.619 0.00 0.00 45.62 3.58
2867 4850 2.203800 TCCGATCACGTAAGCATCAC 57.796 50.000 0.00 0.00 45.62 3.06
2868 4851 2.951457 TTCCGATCACGTAAGCATCA 57.049 45.000 0.00 0.00 45.62 3.07
2869 4852 3.123804 ACATTCCGATCACGTAAGCATC 58.876 45.455 0.00 0.00 45.62 3.91
2870 4853 3.179443 ACATTCCGATCACGTAAGCAT 57.821 42.857 0.00 0.00 45.62 3.79
2871 4854 2.665649 ACATTCCGATCACGTAAGCA 57.334 45.000 0.00 0.00 45.62 3.91
2872 4855 2.030457 CCAACATTCCGATCACGTAAGC 59.970 50.000 0.00 0.00 45.62 3.09
2874 4857 3.596310 TCCAACATTCCGATCACGTAA 57.404 42.857 0.00 0.00 37.88 3.18
2875 4858 3.255725 GTTCCAACATTCCGATCACGTA 58.744 45.455 0.00 0.00 37.88 3.57
2876 4859 2.073816 GTTCCAACATTCCGATCACGT 58.926 47.619 0.00 0.00 37.88 4.49
2877 4860 1.060553 CGTTCCAACATTCCGATCACG 59.939 52.381 0.00 0.00 39.43 4.35
2878 4861 1.202031 GCGTTCCAACATTCCGATCAC 60.202 52.381 0.00 0.00 0.00 3.06
2879 4862 1.083489 GCGTTCCAACATTCCGATCA 58.917 50.000 0.00 0.00 0.00 2.92
2880 4863 0.377203 GGCGTTCCAACATTCCGATC 59.623 55.000 0.00 0.00 0.00 3.69
2881 4864 0.322098 TGGCGTTCCAACATTCCGAT 60.322 50.000 0.00 0.00 39.99 4.18
2882 4865 1.071642 TGGCGTTCCAACATTCCGA 59.928 52.632 0.00 0.00 39.99 4.55
2883 4866 3.661911 TGGCGTTCCAACATTCCG 58.338 55.556 0.00 0.00 39.99 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.