AutoCloner

Multiple sequence alignment - TraesCS1A01G311000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G311000	chr1A	100.000	2167	0	0	899	3065	502677635	502679801	0.000000e+00	4002.0
1	TraesCS1A01G311000	chr1A	100.000	593	0	0	1	593	502676737	502677329	0.000000e+00	1096.0
2	TraesCS1A01G311000	chr1B	94.123	2161	59	24	899	3026	547281723	547283848	0.000000e+00	3225.0
3	TraesCS1A01G311000	chr1B	90.805	348	14	9	245	590	547281322	547281653	1.680000e-122	449.0
4	TraesCS1A01G311000	chr1B	83.628	226	12	16	3	209	547281107	547281326	4.030000e-44	189.0
5	TraesCS1A01G311000	chr1D	95.294	2040	50	19	899	2914	406972947	406974964	0.000000e+00	3193.0
6	TraesCS1A01G311000	chr1D	92.295	597	22	16	1	590	406972310	406972889	0.000000e+00	826.0
7	TraesCS1A01G311000	chr3B	89.368	1091	111	4	997	2083	572936930	572935841	0.000000e+00	1367.0
8	TraesCS1A01G311000	chr3B	94.231	52	1	1	3016	3065	5951436	5951385	9.110000e-11	78.7
9	TraesCS1A01G311000	chr3D	90.462	1038	94	5	1029	2063	437779397	437778362	0.000000e+00	1363.0
10	TraesCS1A01G311000	chr3D	94.118	51	1	1	3017	3065	255146999	255146949	3.280000e-10	76.8
11	TraesCS1A01G311000	chr3D	94.118	51	1	1	3017	3065	422648331	422648381	3.280000e-10	76.8
12	TraesCS1A01G311000	chr3A	89.581	1075	102	9	997	2063	575949006	575947934	0.000000e+00	1356.0
13	TraesCS1A01G311000	chr5A	83.121	942	144	11	1052	1981	308376769	308375831	0.000000e+00	845.0
14	TraesCS1A01G311000	chr5D	82.568	958	150	12	1037	1981	243219947	243220900	0.000000e+00	828.0
15	TraesCS1A01G311000	chr5B	82.784	941	149	9	1052	1981	255200464	255199526	0.000000e+00	828.0
16	TraesCS1A01G311000	chr6A	95.918	49	0	1	3019	3065	11165158	11165110	9.110000e-11	78.7
17	TraesCS1A01G311000	chr6A	94.118	51	1	1	3017	3065	325903609	325903559	3.280000e-10	76.8
18	TraesCS1A01G311000	chr7B	95.833	48	0	1	3020	3065	144267945	144267898	3.280000e-10	76.8
19	TraesCS1A01G311000	chr7B	94.118	51	1	1	3017	3065	312518504	312518454	3.280000e-10	76.8
20	TraesCS1A01G311000	chr7B	100.000	30	0	0	1298	1327	508981759	508981730	4.270000e-04	56.5
21	TraesCS1A01G311000	chr4D	94.118	51	1	1	3017	3065	24864781	24864731	3.280000e-10	76.8
22	TraesCS1A01G311000	chr4B	94.118	51	1	1	3017	3065	338839293	338839343	3.280000e-10	76.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G311000	chr1A	502676737	502679801	3064	False	2549.000000	4002	100.000000	1	3065	2	chr1A.!!$F1	3064
1	TraesCS1A01G311000	chr1B	547281107	547283848	2741	False	1287.666667	3225	89.518667	3	3026	3	chr1B.!!$F1	3023
2	TraesCS1A01G311000	chr1D	406972310	406974964	2654	False	2009.500000	3193	93.794500	1	2914	2	chr1D.!!$F1	2913
3	TraesCS1A01G311000	chr3B	572935841	572936930	1089	True	1367.000000	1367	89.368000	997	2083	1	chr3B.!!$R2	1086
4	TraesCS1A01G311000	chr3D	437778362	437779397	1035	True	1363.000000	1363	90.462000	1029	2063	1	chr3D.!!$R2	1034
5	TraesCS1A01G311000	chr3A	575947934	575949006	1072	True	1356.000000	1356	89.581000	997	2063	1	chr3A.!!$R1	1066
6	TraesCS1A01G311000	chr5A	308375831	308376769	938	True	845.000000	845	83.121000	1052	1981	1	chr5A.!!$R1	929
7	TraesCS1A01G311000	chr5D	243219947	243220900	953	False	828.000000	828	82.568000	1037	1981	1	chr5D.!!$F1	944
8	TraesCS1A01G311000	chr5B	255199526	255200464	938	True	828.000000	828	82.784000	1052	1981	1	chr5B.!!$R1	929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
446	468	0.107945	CTCCCCAGCGGAAGAAAGAG	60.108	60.0	0.0	0.0	41.4	2.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2136	2176	1.14693	GCCTAGCCTGCATGCAGTA	59.853	57.895	38.22	26.46	42.15	2.74	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
141	145	5.009631	CCCATGACACCAACTATTTTCTGA	58.990	41.667	0.00	0.00	0.00	3.27
221	243	3.773119	ACGGTAGGTGATGTAACTTGGAT	59.227	43.478	0.00	0.00	0.00	3.41
234	256	5.868258	TGTAACTTGGATACGTATTTTCGCA	59.132	36.000	9.92	0.08	42.51	5.10
236	258	3.869246	ACTTGGATACGTATTTTCGCAGG	59.131	43.478	9.92	2.48	42.51	4.85
237	259	2.828877	TGGATACGTATTTTCGCAGGG	58.171	47.619	9.92	0.00	42.51	4.45
247	269	0.958822	TTTCGCAGGGAAAAAGAGGC	59.041	50.000	10.12	0.00	41.55	4.70
248	270	1.234615	TTCGCAGGGAAAAAGAGGCG	61.235	55.000	0.00	0.00	45.24	5.52
249	271	2.568612	GCAGGGAAAAAGAGGCGC	59.431	61.111	0.00	0.00	0.00	6.53
326	348	2.465855	GTGGCACTTTTTAAACCACCG	58.534	47.619	11.13	0.00	44.04	4.94
371	393	1.295423	CCGGCCCGAAAAGAGAAGA	59.705	57.895	3.71	0.00	0.00	2.87
372	394	0.321298	CCGGCCCGAAAAGAGAAGAA	60.321	55.000	3.71	0.00	0.00	2.52
445	467	1.983224	CTCCCCAGCGGAAGAAAGA	59.017	57.895	0.00	0.00	41.40	2.52
446	468	0.107945	CTCCCCAGCGGAAGAAAGAG	60.108	60.000	0.00	0.00	41.40	2.85
447	469	0.544357	TCCCCAGCGGAAGAAAGAGA	60.544	55.000	0.00	0.00	37.88	3.10
524	547	4.124126	ACCCATCCCCTCCCCTCC	62.124	72.222	0.00	0.00	0.00	4.30
561	585	1.265905	CGCAACTCAACCTTAACCCAC	59.734	52.381	0.00	0.00	0.00	4.61
1839	1876	0.036858	GAGTGGTCAAGGACTGGCTC	60.037	60.000	0.00	0.00	32.47	4.70
1920	1957	2.044946	GGCATCGCCTTCTTGGGT	60.045	61.111	0.00	0.00	46.69	4.51
2119	2159	6.985653	TGGTTGGTTCTAAAATCCATTTGA	57.014	33.333	0.00	0.00	32.27	2.69
2125	2165	8.055279	TGGTTCTAAAATCCATTTGAGTGATC	57.945	34.615	0.00	0.00	31.44	2.92
2130	2170	8.668353	TCTAAAATCCATTTGAGTGATCTTTCG	58.332	33.333	0.00	0.00	31.44	3.46
2136	2176	6.486657	TCCATTTGAGTGATCTTTCGTTTTCT	59.513	34.615	0.00	0.00	0.00	2.52
2190	2230	5.645056	TGATTTGCCATGGTAGAGGAATA	57.355	39.130	14.67	0.00	0.00	1.75
2196	2236	6.959639	TGCCATGGTAGAGGAATAAAAATC	57.040	37.500	14.67	0.00	0.00	2.17
2198	2238	5.763204	GCCATGGTAGAGGAATAAAAATCGA	59.237	40.000	14.67	0.00	0.00	3.59
2251	2291	0.727398	GCGATGTACTTTGCCCACTC	59.273	55.000	9.38	0.00	0.00	3.51
2265	2312	5.043737	TGCCCACTCTTGTTTAAGTAGTT	57.956	39.130	0.00	0.00	35.38	2.24
2325	2375	7.492352	TTAAGTTGCTGTCCTTCTACTTTTC	57.508	36.000	0.00	0.00	0.00	2.29
2333	2383	6.428083	TGTCCTTCTACTTTTCATGGTGTA	57.572	37.500	0.00	0.00	0.00	2.90
2345	2395	9.988815	ACTTTTCATGGTGTAGACTATCATATC	57.011	33.333	0.00	0.00	0.00	1.63
2346	2396	9.987272	CTTTTCATGGTGTAGACTATCATATCA	57.013	33.333	0.00	0.00	0.00	2.15
2631	2681	6.272822	AGGAAATACTTGCATTTGAACCTC	57.727	37.500	0.00	0.00	0.00	3.85
2632	2682	5.185828	AGGAAATACTTGCATTTGAACCTCC	59.814	40.000	0.00	0.00	0.00	4.30
2700	2771	1.035032	GCGTTTTTGTTTCTCTCGCG	58.965	50.000	0.00	0.00	33.59	5.87
2718	2789	3.310227	TCGCGCATTCCGTATTTATTTGT	59.690	39.130	8.75	0.00	39.71	2.83
2721	2792	4.439776	GCGCATTCCGTATTTATTTGTTCC	59.560	41.667	0.30	0.00	39.71	3.62
2845	2916	7.593825	TCAATAGTTGCCTCTTTTAGCTTTTC	58.406	34.615	0.00	0.00	0.00	2.29
2850	2921	8.127150	AGTTGCCTCTTTTAGCTTTTCATATT	57.873	30.769	0.00	0.00	0.00	1.28
2863	2934	7.774134	AGCTTTTCATATTGTGTGATTATGCA	58.226	30.769	0.00	0.00	0.00	3.96
2867	2938	7.495135	TTCATATTGTGTGATTATGCATCGT	57.505	32.000	0.19	0.00	34.08	3.73
2914	2985	2.827322	TGCCTGATCAATTTTCACCTGG	59.173	45.455	0.00	0.00	0.00	4.45
2916	2987	2.159338	CCTGATCAATTTTCACCTGGCG	60.159	50.000	0.00	0.00	0.00	5.69
3026	3102	7.749126	GGTAACTTAAGTTGCATTGTCATGTAC	59.251	37.037	29.69	16.16	41.47	2.90
3027	3103	7.510549	AACTTAAGTTGCATTGTCATGTACT	57.489	32.000	19.94	0.00	36.80	2.73
3028	3104	7.133891	ACTTAAGTTGCATTGTCATGTACTC	57.866	36.000	1.12	0.00	31.14	2.59
3029	3105	6.149474	ACTTAAGTTGCATTGTCATGTACTCC	59.851	38.462	1.12	0.00	31.14	3.85
3030	3106	3.347216	AGTTGCATTGTCATGTACTCCC	58.653	45.455	0.00	0.00	32.28	4.30
3031	3107	3.009473	AGTTGCATTGTCATGTACTCCCT	59.991	43.478	0.00	0.00	32.28	4.20
3032	3108	3.266510	TGCATTGTCATGTACTCCCTC	57.733	47.619	0.00	0.00	32.28	4.30
3033	3109	2.092968	TGCATTGTCATGTACTCCCTCC	60.093	50.000	0.00	0.00	32.28	4.30
3034	3110	2.826428	CATTGTCATGTACTCCCTCCG	58.174	52.381	0.00	0.00	0.00	4.63
3035	3111	1.933021	TTGTCATGTACTCCCTCCGT	58.067	50.000	0.00	0.00	0.00	4.69
3036	3112	1.471119	TGTCATGTACTCCCTCCGTC	58.529	55.000	0.00	0.00	0.00	4.79
3037	3113	0.745468	GTCATGTACTCCCTCCGTCC	59.255	60.000	0.00	0.00	0.00	4.79
3038	3114	0.396695	TCATGTACTCCCTCCGTCCC	60.397	60.000	0.00	0.00	0.00	4.46
3039	3115	0.686441	CATGTACTCCCTCCGTCCCA	60.686	60.000	0.00	0.00	0.00	4.37
3040	3116	0.042131	ATGTACTCCCTCCGTCCCAA	59.958	55.000	0.00	0.00	0.00	4.12
3041	3117	0.178926	TGTACTCCCTCCGTCCCAAA	60.179	55.000	0.00	0.00	0.00	3.28
3042	3118	0.978907	GTACTCCCTCCGTCCCAAAA	59.021	55.000	0.00	0.00	0.00	2.44
3043	3119	1.558294	GTACTCCCTCCGTCCCAAAAT	59.442	52.381	0.00	0.00	0.00	1.82
3044	3120	1.961133	ACTCCCTCCGTCCCAAAATA	58.039	50.000	0.00	0.00	0.00	1.40
3045	3121	2.271777	ACTCCCTCCGTCCCAAAATAA	58.728	47.619	0.00	0.00	0.00	1.40
3046	3122	2.238898	ACTCCCTCCGTCCCAAAATAAG	59.761	50.000	0.00	0.00	0.00	1.73
3047	3123	2.238898	CTCCCTCCGTCCCAAAATAAGT	59.761	50.000	0.00	0.00	0.00	2.24
3048	3124	2.026636	TCCCTCCGTCCCAAAATAAGTG	60.027	50.000	0.00	0.00	0.00	3.16
3049	3125	2.290705	CCCTCCGTCCCAAAATAAGTGT	60.291	50.000	0.00	0.00	0.00	3.55
3050	3126	3.007635	CCTCCGTCCCAAAATAAGTGTC	58.992	50.000	0.00	0.00	0.00	3.67
3051	3127	3.558321	CCTCCGTCCCAAAATAAGTGTCA	60.558	47.826	0.00	0.00	0.00	3.58
3052	3128	4.069304	CTCCGTCCCAAAATAAGTGTCAA	58.931	43.478	0.00	0.00	0.00	3.18
3053	3129	3.816523	TCCGTCCCAAAATAAGTGTCAAC	59.183	43.478	0.00	0.00	0.00	3.18
3054	3130	3.818773	CCGTCCCAAAATAAGTGTCAACT	59.181	43.478	0.00	0.00	38.71	3.16
3056	3132	5.221165	CCGTCCCAAAATAAGTGTCAACTTT	60.221	40.000	0.00	0.00	44.47	2.66
3057	3133	5.685511	CGTCCCAAAATAAGTGTCAACTTTG	59.314	40.000	0.00	0.00	44.47	2.77
3058	3134	6.569780	GTCCCAAAATAAGTGTCAACTTTGT	58.430	36.000	0.00	0.00	44.47	2.83
3059	3135	7.467539	CGTCCCAAAATAAGTGTCAACTTTGTA	60.468	37.037	0.00	0.00	44.47	2.41
3060	3136	7.646526	GTCCCAAAATAAGTGTCAACTTTGTAC	59.353	37.037	0.00	0.00	44.47	2.90
3061	3137	7.558444	TCCCAAAATAAGTGTCAACTTTGTACT	59.442	33.333	0.00	0.00	44.47	2.73
3062	3138	8.842280	CCCAAAATAAGTGTCAACTTTGTACTA	58.158	33.333	0.00	0.00	44.47	1.82
3063	3139	9.878599	CCAAAATAAGTGTCAACTTTGTACTAG	57.121	33.333	0.00	0.00	44.47	2.57
3064	3140	9.382244	CAAAATAAGTGTCAACTTTGTACTAGC	57.618	33.333	0.00	0.00	44.47	3.42

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	32	4.621034	ACACGCAAAAACACTGAAAGAAAG	59.379	37.500	0.00	0.00	37.43	2.62
148	152	4.287326	TGTGACATGGATAGGTTGTGGTAA	59.713	41.667	0.00	0.00	0.00	2.85
149	153	3.841255	TGTGACATGGATAGGTTGTGGTA	59.159	43.478	0.00	0.00	0.00	3.25
163	184	3.015293	GAGCCGCGTGTGTGACATG	62.015	63.158	4.92	0.00	38.13	3.21
166	187	2.317609	AATGAGCCGCGTGTGTGAC	61.318	57.895	4.92	0.00	0.00	3.67
234	256	1.303643	CCAGCGCCTCTTTTTCCCT	60.304	57.895	2.29	0.00	0.00	4.20
236	258	1.308783	CCTCCAGCGCCTCTTTTTCC	61.309	60.000	2.29	0.00	0.00	3.13
237	259	1.927608	GCCTCCAGCGCCTCTTTTTC	61.928	60.000	2.29	0.00	0.00	2.29
248	270	3.782042	CGTTTCTACGCCTCCAGC	58.218	61.111	0.00	0.00	41.41	4.85
272	294	2.806945	ATGGGTAACTCCATGTGTGG	57.193	50.000	0.00	0.00	45.13	4.17
326	348	4.059459	CCGCTGTGACGTTGACGC	62.059	66.667	3.05	0.00	44.43	5.19
378	400	2.682269	GCTGGATTCCCACCTCTCTTTC	60.682	54.545	0.00	0.00	37.58	2.62
440	462	9.729023	CTTTCCTTTTCTTTCTTTCTCTCTTTC	57.271	33.333	0.00	0.00	0.00	2.62
441	463	8.194104	GCTTTCCTTTTCTTTCTTTCTCTCTTT	58.806	33.333	0.00	0.00	0.00	2.52
445	467	7.410120	TTGCTTTCCTTTTCTTTCTTTCTCT	57.590	32.000	0.00	0.00	0.00	3.10
446	468	7.114106	CGATTGCTTTCCTTTTCTTTCTTTCTC	59.886	37.037	0.00	0.00	0.00	2.87
447	469	6.920210	CGATTGCTTTCCTTTTCTTTCTTTCT	59.080	34.615	0.00	0.00	0.00	2.52
547	571	0.701659	TGGGGGTGGGTTAAGGTTGA	60.702	55.000	0.00	0.00	0.00	3.18
548	572	0.541063	GTGGGGGTGGGTTAAGGTTG	60.541	60.000	0.00	0.00	0.00	3.77
549	573	1.732355	GGTGGGGGTGGGTTAAGGTT	61.732	60.000	0.00	0.00	0.00	3.50
550	574	2.164967	GGTGGGGGTGGGTTAAGGT	61.165	63.158	0.00	0.00	0.00	3.50
551	575	2.768045	GGTGGGGGTGGGTTAAGG	59.232	66.667	0.00	0.00	0.00	2.69
933	958	3.171388	ATCTGGATCCGGGTGGGC	61.171	66.667	20.82	0.00	35.24	5.36
976	1001	2.266055	CTCCTTCGCCTTCGCCTT	59.734	61.111	0.00	0.00	35.26	4.35
977	1002	3.775654	CCTCCTTCGCCTTCGCCT	61.776	66.667	0.00	0.00	35.26	5.52
982	1007	3.775654	CGCTCCCTCCTTCGCCTT	61.776	66.667	0.00	0.00	0.00	4.35
983	1008	4.761058	TCGCTCCCTCCTTCGCCT	62.761	66.667	0.00	0.00	0.00	5.52
988	1013	3.483869	GGCCATCGCTCCCTCCTT	61.484	66.667	0.00	0.00	34.44	3.36
1839	1876	2.363683	GACCAGGAGAAGGCAATCAAG	58.636	52.381	0.00	0.00	0.00	3.02
1920	1957	5.685520	TGATATGGTTGTAGTAGCCAACA	57.314	39.130	5.73	0.00	43.37	3.33
2119	2159	5.297547	TGCAGTAGAAAACGAAAGATCACT	58.702	37.500	0.00	0.00	0.00	3.41
2125	2165	4.145876	TGCATGCAGTAGAAAACGAAAG	57.854	40.909	18.46	0.00	0.00	2.62
2130	2170	1.815003	AGCCTGCATGCAGTAGAAAAC	59.185	47.619	38.22	21.21	42.15	2.43
2136	2176	1.146930	GCCTAGCCTGCATGCAGTA	59.853	57.895	38.22	26.46	42.15	2.74
2147	2187	6.267496	TCAAGAAAAATAACAAGCCTAGCC	57.733	37.500	0.00	0.00	0.00	3.93
2148	2188	8.650714	CAAATCAAGAAAAATAACAAGCCTAGC	58.349	33.333	0.00	0.00	0.00	3.42
2149	2189	8.650714	GCAAATCAAGAAAAATAACAAGCCTAG	58.349	33.333	0.00	0.00	0.00	3.02
2196	2236	6.497437	TGCCAATGAATCATACATTTCTTCG	58.503	36.000	0.00	0.00	36.07	3.79
2198	2238	7.414222	ACTGCCAATGAATCATACATTTCTT	57.586	32.000	0.00	0.00	36.07	2.52
2265	2312	7.564660	AGCATCCCCATTGATCTTTACAATTTA	59.435	33.333	0.00	0.00	36.07	1.40
2345	2395	8.093307	ACAGAAAGCATGTACCAGATCTATATG	58.907	37.037	0.00	0.00	0.00	1.78
2346	2396	8.200024	ACAGAAAGCATGTACCAGATCTATAT	57.800	34.615	0.00	0.00	0.00	0.86
2347	2397	7.287696	TGACAGAAAGCATGTACCAGATCTATA	59.712	37.037	0.00	0.00	0.00	1.31
2348	2398	6.098838	TGACAGAAAGCATGTACCAGATCTAT	59.901	38.462	0.00	0.00	0.00	1.98
2349	2399	5.422012	TGACAGAAAGCATGTACCAGATCTA	59.578	40.000	0.00	0.00	0.00	1.98
2350	2400	4.223700	TGACAGAAAGCATGTACCAGATCT	59.776	41.667	0.00	0.00	0.00	2.75
2351	2401	4.507710	TGACAGAAAGCATGTACCAGATC	58.492	43.478	0.00	0.00	0.00	2.75
2352	2402	4.223700	TCTGACAGAAAGCATGTACCAGAT	59.776	41.667	1.64	0.00	30.73	2.90
2353	2403	3.578282	TCTGACAGAAAGCATGTACCAGA	59.422	43.478	1.64	0.00	32.30	3.86
2354	2404	3.930336	TCTGACAGAAAGCATGTACCAG	58.070	45.455	1.64	0.00	0.00	4.00
2355	2405	4.350368	TTCTGACAGAAAGCATGTACCA	57.650	40.909	15.58	0.00	29.99	3.25
2356	2406	6.595716	ACTTATTCTGACAGAAAGCATGTACC	59.404	38.462	21.29	0.00	37.82	3.34
2357	2407	7.602517	ACTTATTCTGACAGAAAGCATGTAC	57.397	36.000	21.29	0.00	37.82	2.90
2632	2682	3.583086	TGTTCCTTCTAACCCTCCAGAAG	59.417	47.826	4.69	4.69	44.84	2.85
2700	2771	6.560711	ACTGGAACAAATAAATACGGAATGC	58.439	36.000	0.00	0.00	38.70	3.56
2718	2789	6.382919	ACATTTTTACCTAGGCTACTGGAA	57.617	37.500	9.30	0.00	0.00	3.53
2721	2792	6.258068	GCAGTACATTTTTACCTAGGCTACTG	59.742	42.308	9.30	11.16	34.31	2.74
2845	2916	8.473796	CAAAACGATGCATAATCACACAATATG	58.526	33.333	0.00	0.00	34.68	1.78
2850	2921	5.369685	ACAAAACGATGCATAATCACACA	57.630	34.783	0.00	0.00	34.68	3.72
2863	2934	2.547642	CCCAACCATGCAACAAAACGAT	60.548	45.455	0.00	0.00	0.00	3.73
2867	2938	1.833630	TCACCCAACCATGCAACAAAA	59.166	42.857	0.00	0.00	0.00	2.44
2914	2985	5.391060	AAAGAATCTTAGCAATACGTCGC	57.609	39.130	0.00	0.00	0.00	5.19
2916	2987	9.638300	CATGTAAAAGAATCTTAGCAATACGTC	57.362	33.333	0.00	0.00	0.00	4.34
2970	3041	9.661563	CCTAGTGACAAAACAAACCATATACTA	57.338	33.333	0.00	0.00	0.00	1.82
2971	3042	8.161425	ACCTAGTGACAAAACAAACCATATACT	58.839	33.333	0.00	0.00	0.00	2.12
3026	3102	2.238898	ACTTATTTTGGGACGGAGGGAG	59.761	50.000	0.00	0.00	0.00	4.30
3027	3103	2.026636	CACTTATTTTGGGACGGAGGGA	60.027	50.000	0.00	0.00	0.00	4.20
3028	3104	2.290705	ACACTTATTTTGGGACGGAGGG	60.291	50.000	0.00	0.00	0.00	4.30
3029	3105	3.007635	GACACTTATTTTGGGACGGAGG	58.992	50.000	0.00	0.00	0.00	4.30
3030	3106	3.670625	TGACACTTATTTTGGGACGGAG	58.329	45.455	0.00	0.00	0.00	4.63
3031	3107	3.773418	TGACACTTATTTTGGGACGGA	57.227	42.857	0.00	0.00	0.00	4.69
3032	3108	3.818773	AGTTGACACTTATTTTGGGACGG	59.181	43.478	0.00	0.00	0.00	4.79
3033	3109	5.432885	AAGTTGACACTTATTTTGGGACG	57.567	39.130	0.00	0.00	41.81	4.79
3034	3110	6.569780	ACAAAGTTGACACTTATTTTGGGAC	58.430	36.000	0.00	0.00	42.89	4.46
3035	3111	6.783708	ACAAAGTTGACACTTATTTTGGGA	57.216	33.333	0.00	0.00	42.89	4.37
3036	3112	7.712797	AGTACAAAGTTGACACTTATTTTGGG	58.287	34.615	0.00	0.00	42.89	4.12
3037	3113	9.878599	CTAGTACAAAGTTGACACTTATTTTGG	57.121	33.333	0.00	0.00	42.89	3.28
3038	3114	9.382244	GCTAGTACAAAGTTGACACTTATTTTG	57.618	33.333	0.00	0.00	42.89	2.44

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.