Multiple sequence alignment - TraesCS1A01G309400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G309400 chr1A 100.000 3926 0 0 1 3926 500344474 500340549 0.000000e+00 7251.0
1 TraesCS1A01G309400 chr1A 97.143 35 1 0 326 360 500344104 500344070 4.240000e-05 60.2
2 TraesCS1A01G309400 chr1A 97.143 35 1 0 371 405 500344149 500344115 4.240000e-05 60.2
3 TraesCS1A01G309400 chr1B 94.861 2549 95 19 752 3278 544727291 544724757 0.000000e+00 3949.0
4 TraesCS1A01G309400 chr1B 91.637 562 29 6 3367 3926 544724751 544724206 0.000000e+00 761.0
5 TraesCS1A01G309400 chr1B 88.636 88 9 1 3273 3360 66121513 66121427 5.370000e-19 106.0
6 TraesCS1A01G309400 chr1B 86.139 101 11 3 3266 3364 173123369 173123468 5.370000e-19 106.0
7 TraesCS1A01G309400 chr1D 94.386 2387 86 27 646 3003 404971290 404968923 0.000000e+00 3622.0
8 TraesCS1A01G309400 chr1D 88.189 254 18 7 3032 3279 404968923 404968676 3.840000e-75 292.0
9 TraesCS1A01G309400 chr1D 88.325 197 12 1 401 586 404972178 404971982 3.950000e-55 226.0
10 TraesCS1A01G309400 chr1D 81.181 271 30 6 3393 3652 404784010 404783750 8.600000e-47 198.0
11 TraesCS1A01G309400 chr4D 83.654 832 132 4 1123 1952 109911952 109911123 0.000000e+00 780.0
12 TraesCS1A01G309400 chr4D 90.722 97 8 1 3264 3360 43619266 43619361 1.150000e-25 128.0
13 TraesCS1A01G309400 chr4D 88.043 92 10 1 3277 3368 371792535 371792625 1.490000e-19 108.0
14 TraesCS1A01G309400 chr4A 83.413 832 134 4 1123 1952 466926025 466926854 0.000000e+00 769.0
15 TraesCS1A01G309400 chr4B 82.713 833 138 6 1123 1952 171028540 171027711 0.000000e+00 736.0
16 TraesCS1A01G309400 chr4B 91.358 81 6 1 3277 3357 635944122 635944201 4.150000e-20 110.0
17 TraesCS1A01G309400 chr5A 77.529 1295 235 44 1123 2387 310874921 310873653 0.000000e+00 728.0
18 TraesCS1A01G309400 chr5D 77.340 1293 240 41 1123 2387 242356809 242358076 0.000000e+00 715.0
19 TraesCS1A01G309400 chr5D 88.636 88 8 2 3274 3360 482890145 482890059 5.370000e-19 106.0
20 TraesCS1A01G309400 chr5B 81.220 836 145 12 1123 1952 259538264 259539093 0.000000e+00 664.0
21 TraesCS1A01G309400 chr3A 87.456 574 66 6 1075 1645 579552950 579553520 0.000000e+00 656.0
22 TraesCS1A01G309400 chr3A 77.347 852 129 47 1796 2642 579553872 579554664 2.780000e-121 446.0
23 TraesCS1A01G309400 chr3B 86.328 512 49 10 213 706 10720385 10720893 4.460000e-149 538.0
24 TraesCS1A01G309400 chr3B 76.140 658 119 28 1796 2427 576658428 576659073 1.060000e-80 311.0
25 TraesCS1A01G309400 chr3B 86.425 221 28 2 509 728 125786220 125786001 1.410000e-59 241.0
26 TraesCS1A01G309400 chr3B 94.326 141 7 1 2502 2642 576659157 576659296 8.540000e-52 215.0
27 TraesCS1A01G309400 chr3B 89.474 95 8 2 3264 3357 708604882 708604975 6.890000e-23 119.0
28 TraesCS1A01G309400 chr3D 77.196 649 119 25 1796 2429 439839628 439840262 6.240000e-93 351.0
29 TraesCS1A01G309400 chr3D 95.035 141 6 1 2502 2642 439840344 439840483 1.840000e-53 220.0
30 TraesCS1A01G309400 chr6B 81.457 302 48 6 1607 1904 717076325 717076028 1.410000e-59 241.0
31 TraesCS1A01G309400 chr6B 85.567 97 13 1 3268 3364 134656808 134656903 2.500000e-17 100.0
32 TraesCS1A01G309400 chr6D 89.583 144 14 1 581 723 47050949 47051092 8.670000e-42 182.0
33 TraesCS1A01G309400 chr7A 85.859 99 11 3 3264 3360 612375707 612375610 6.940000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G309400 chr1A 500340549 500344474 3925 True 2457.133333 7251 98.095333 1 3926 3 chr1A.!!$R1 3925
1 TraesCS1A01G309400 chr1B 544724206 544727291 3085 True 2355.000000 3949 93.249000 752 3926 2 chr1B.!!$R2 3174
2 TraesCS1A01G309400 chr1D 404968676 404972178 3502 True 1380.000000 3622 90.300000 401 3279 3 chr1D.!!$R2 2878
3 TraesCS1A01G309400 chr4D 109911123 109911952 829 True 780.000000 780 83.654000 1123 1952 1 chr4D.!!$R1 829
4 TraesCS1A01G309400 chr4A 466926025 466926854 829 False 769.000000 769 83.413000 1123 1952 1 chr4A.!!$F1 829
5 TraesCS1A01G309400 chr4B 171027711 171028540 829 True 736.000000 736 82.713000 1123 1952 1 chr4B.!!$R1 829
6 TraesCS1A01G309400 chr5A 310873653 310874921 1268 True 728.000000 728 77.529000 1123 2387 1 chr5A.!!$R1 1264
7 TraesCS1A01G309400 chr5D 242356809 242358076 1267 False 715.000000 715 77.340000 1123 2387 1 chr5D.!!$F1 1264
8 TraesCS1A01G309400 chr5B 259538264 259539093 829 False 664.000000 664 81.220000 1123 1952 1 chr5B.!!$F1 829
9 TraesCS1A01G309400 chr3A 579552950 579554664 1714 False 551.000000 656 82.401500 1075 2642 2 chr3A.!!$F1 1567
10 TraesCS1A01G309400 chr3B 10720385 10720893 508 False 538.000000 538 86.328000 213 706 1 chr3B.!!$F1 493
11 TraesCS1A01G309400 chr3B 576658428 576659296 868 False 263.000000 311 85.233000 1796 2642 2 chr3B.!!$F3 846
12 TraesCS1A01G309400 chr3D 439839628 439840483 855 False 285.500000 351 86.115500 1796 2642 2 chr3D.!!$F1 846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.032813 ATGGGCCTTGGTGAATGAGG 60.033 55.0 4.53 0.00 0.00 3.86 F
204 205 0.179018 ACTCTTTGGGCGATATGGGC 60.179 55.0 2.40 2.40 0.00 5.36 F
205 206 0.179020 CTCTTTGGGCGATATGGGCA 60.179 55.0 13.23 0.00 0.00 5.36 F
1656 2421 0.252742 TCTTCAAGGAGGGGGAGGTC 60.253 60.0 0.00 0.00 0.00 3.85 F
2435 3399 0.103390 GGAGGCCGTAAGAAGAGCTC 59.897 60.0 5.27 5.27 43.02 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 2786 1.071567 GCTTACTGAGGACGTCGTGC 61.072 60.000 16.63 9.08 0.0 5.34 R
2067 2972 2.047179 GCCTCGCCGTCCTCTTTT 60.047 61.111 0.00 0.00 0.0 2.27 R
2213 3155 2.485814 AGCTTTCAGAATTCGGACTTGC 59.514 45.455 7.86 11.85 0.0 4.01 R
2775 3777 0.108472 CACGGCATGAAGAGAGCAGA 60.108 55.000 0.00 0.00 0.0 4.26 R
3448 4484 1.134367 TCAGATCGCGGAGTAGTTTGG 59.866 52.381 6.13 0.00 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.340789 GTGCGGTTCACCCAACTC 58.659 61.111 0.00 0.00 39.79 3.01
18 19 1.525077 GTGCGGTTCACCCAACTCA 60.525 57.895 0.00 0.00 39.79 3.41
19 20 0.889186 GTGCGGTTCACCCAACTCAT 60.889 55.000 0.00 0.00 39.79 2.90
20 21 0.888736 TGCGGTTCACCCAACTCATG 60.889 55.000 0.00 0.00 35.06 3.07
39 40 4.668925 AGGCACTCCCTTCTGGAA 57.331 55.556 0.00 0.00 43.06 3.53
40 41 3.111265 AGGCACTCCCTTCTGGAAT 57.889 52.632 0.00 0.00 43.06 3.01
41 42 0.622665 AGGCACTCCCTTCTGGAATG 59.377 55.000 0.00 0.00 43.06 2.67
43 44 3.963733 CACTCCCTTCTGGAATGCA 57.036 52.632 0.00 0.00 44.57 3.96
44 45 1.457346 CACTCCCTTCTGGAATGCAC 58.543 55.000 0.00 0.00 44.57 4.57
45 46 0.036010 ACTCCCTTCTGGAATGCACG 60.036 55.000 0.00 0.00 44.57 5.34
46 47 0.250234 CTCCCTTCTGGAATGCACGA 59.750 55.000 0.00 0.00 44.57 4.35
47 48 0.911769 TCCCTTCTGGAATGCACGAT 59.088 50.000 0.00 0.00 41.40 3.73
48 49 1.019673 CCCTTCTGGAATGCACGATG 58.980 55.000 0.00 0.00 35.39 3.84
49 50 1.679944 CCCTTCTGGAATGCACGATGT 60.680 52.381 0.00 0.00 35.39 3.06
50 51 2.086869 CCTTCTGGAATGCACGATGTT 58.913 47.619 0.00 0.00 34.57 2.71
51 52 2.489329 CCTTCTGGAATGCACGATGTTT 59.511 45.455 0.00 0.00 34.57 2.83
52 53 3.689161 CCTTCTGGAATGCACGATGTTTA 59.311 43.478 0.00 0.00 34.57 2.01
53 54 4.201851 CCTTCTGGAATGCACGATGTTTAG 60.202 45.833 0.00 0.00 34.57 1.85
54 55 3.270027 TCTGGAATGCACGATGTTTAGG 58.730 45.455 0.00 0.00 0.00 2.69
55 56 3.009723 CTGGAATGCACGATGTTTAGGT 58.990 45.455 0.00 0.00 0.00 3.08
56 57 2.746904 TGGAATGCACGATGTTTAGGTG 59.253 45.455 0.00 0.00 34.85 4.00
62 63 3.121559 CACGATGTTTAGGTGCACATG 57.878 47.619 20.43 0.00 33.62 3.21
63 64 2.083774 ACGATGTTTAGGTGCACATGG 58.916 47.619 20.43 6.20 33.62 3.66
64 65 1.401552 CGATGTTTAGGTGCACATGGG 59.598 52.381 20.43 0.00 33.62 4.00
65 66 1.134946 GATGTTTAGGTGCACATGGGC 59.865 52.381 20.43 14.67 33.62 5.36
66 67 0.897863 TGTTTAGGTGCACATGGGCC 60.898 55.000 19.33 8.78 0.00 5.80
67 68 0.611896 GTTTAGGTGCACATGGGCCT 60.612 55.000 19.33 10.91 35.28 5.19
68 69 0.114168 TTTAGGTGCACATGGGCCTT 59.886 50.000 19.33 7.89 32.90 4.35
69 70 0.611618 TTAGGTGCACATGGGCCTTG 60.612 55.000 19.33 17.21 32.90 3.61
70 71 2.497792 TAGGTGCACATGGGCCTTGG 62.498 60.000 19.33 12.54 32.90 3.61
71 72 2.601367 GTGCACATGGGCCTTGGT 60.601 61.111 19.33 6.91 0.00 3.67
72 73 2.601067 TGCACATGGGCCTTGGTG 60.601 61.111 19.33 18.42 0.00 4.17
73 74 2.283101 GCACATGGGCCTTGGTGA 60.283 61.111 21.96 0.00 33.16 4.02
74 75 1.907807 GCACATGGGCCTTGGTGAA 60.908 57.895 21.96 0.00 33.16 3.18
75 76 1.259840 GCACATGGGCCTTGGTGAAT 61.260 55.000 21.96 0.00 33.16 2.57
76 77 0.533491 CACATGGGCCTTGGTGAATG 59.467 55.000 21.96 9.93 33.16 2.67
77 78 0.409092 ACATGGGCCTTGGTGAATGA 59.591 50.000 21.96 0.00 0.00 2.57
78 79 1.108776 CATGGGCCTTGGTGAATGAG 58.891 55.000 11.46 0.00 0.00 2.90
79 80 0.032813 ATGGGCCTTGGTGAATGAGG 60.033 55.000 4.53 0.00 0.00 3.86
80 81 1.139498 TGGGCCTTGGTGAATGAGGA 61.139 55.000 4.53 0.00 32.11 3.71
81 82 0.259938 GGGCCTTGGTGAATGAGGAT 59.740 55.000 0.84 0.00 32.11 3.24
82 83 1.342374 GGGCCTTGGTGAATGAGGATT 60.342 52.381 0.84 0.00 32.11 3.01
83 84 2.460669 GGCCTTGGTGAATGAGGATTT 58.539 47.619 0.00 0.00 32.11 2.17
84 85 3.627237 GGGCCTTGGTGAATGAGGATTTA 60.627 47.826 0.84 0.00 32.11 1.40
85 86 3.633986 GGCCTTGGTGAATGAGGATTTAG 59.366 47.826 0.00 0.00 32.11 1.85
86 87 3.067320 GCCTTGGTGAATGAGGATTTAGC 59.933 47.826 0.00 0.00 32.11 3.09
87 88 3.313526 CCTTGGTGAATGAGGATTTAGCG 59.686 47.826 0.00 0.00 30.20 4.26
88 89 2.288666 TGGTGAATGAGGATTTAGCGC 58.711 47.619 0.00 0.00 30.20 5.92
89 90 2.288666 GGTGAATGAGGATTTAGCGCA 58.711 47.619 11.47 0.00 0.00 6.09
90 91 2.682856 GGTGAATGAGGATTTAGCGCAA 59.317 45.455 11.47 0.00 0.00 4.85
91 92 3.128589 GGTGAATGAGGATTTAGCGCAAA 59.871 43.478 11.47 8.89 0.00 3.68
92 93 4.380444 GGTGAATGAGGATTTAGCGCAAAA 60.380 41.667 11.47 0.00 0.00 2.44
93 94 4.558860 GTGAATGAGGATTTAGCGCAAAAC 59.441 41.667 11.47 7.08 0.00 2.43
94 95 3.782889 ATGAGGATTTAGCGCAAAACC 57.217 42.857 11.47 15.63 38.93 3.27
96 97 2.487762 TGAGGATTTAGCGCAAAACCTG 59.512 45.455 26.52 0.00 46.39 4.00
97 98 1.818674 AGGATTTAGCGCAAAACCTGG 59.181 47.619 23.24 0.00 45.12 4.45
98 99 1.544246 GGATTTAGCGCAAAACCTGGT 59.456 47.619 11.47 0.00 36.41 4.00
99 100 2.595386 GATTTAGCGCAAAACCTGGTG 58.405 47.619 11.47 0.00 0.00 4.17
100 101 1.681538 TTTAGCGCAAAACCTGGTGA 58.318 45.000 11.47 0.00 0.00 4.02
101 102 0.948678 TTAGCGCAAAACCTGGTGAC 59.051 50.000 11.47 0.00 0.00 3.67
102 103 0.179043 TAGCGCAAAACCTGGTGACA 60.179 50.000 11.47 0.00 39.59 3.58
103 104 1.034838 AGCGCAAAACCTGGTGACAA 61.035 50.000 11.47 0.00 42.06 3.18
104 105 0.869880 GCGCAAAACCTGGTGACAAC 60.870 55.000 0.30 0.00 42.06 3.32
105 106 0.738389 CGCAAAACCTGGTGACAACT 59.262 50.000 0.00 0.00 42.06 3.16
106 107 1.944024 CGCAAAACCTGGTGACAACTA 59.056 47.619 0.00 0.00 42.06 2.24
107 108 2.286772 CGCAAAACCTGGTGACAACTAC 60.287 50.000 0.00 0.00 42.06 2.73
108 109 2.685897 GCAAAACCTGGTGACAACTACA 59.314 45.455 0.00 0.00 42.06 2.74
109 110 3.488553 GCAAAACCTGGTGACAACTACAC 60.489 47.826 0.00 0.00 42.06 2.90
110 111 3.637911 AAACCTGGTGACAACTACACA 57.362 42.857 0.00 0.00 42.06 3.72
111 112 3.637911 AACCTGGTGACAACTACACAA 57.362 42.857 0.00 0.00 42.06 3.33
112 113 2.914059 ACCTGGTGACAACTACACAAC 58.086 47.619 0.00 0.00 42.06 3.32
113 114 2.218603 CCTGGTGACAACTACACAACC 58.781 52.381 0.00 0.00 42.06 3.77
114 115 2.158813 CCTGGTGACAACTACACAACCT 60.159 50.000 0.00 0.00 42.06 3.50
115 116 3.070446 CCTGGTGACAACTACACAACCTA 59.930 47.826 0.00 0.00 42.06 3.08
116 117 4.443739 CCTGGTGACAACTACACAACCTAA 60.444 45.833 0.00 0.00 42.06 2.69
117 118 5.298989 TGGTGACAACTACACAACCTAAT 57.701 39.130 0.00 0.00 39.65 1.73
118 119 5.060506 TGGTGACAACTACACAACCTAATG 58.939 41.667 0.00 0.00 39.65 1.90
119 120 4.083484 GGTGACAACTACACAACCTAATGC 60.083 45.833 0.00 0.00 39.65 3.56
120 121 4.513692 GTGACAACTACACAACCTAATGCA 59.486 41.667 0.00 0.00 38.05 3.96
121 122 5.008217 GTGACAACTACACAACCTAATGCAA 59.992 40.000 0.00 0.00 38.05 4.08
122 123 5.590663 TGACAACTACACAACCTAATGCAAA 59.409 36.000 0.00 0.00 0.00 3.68
123 124 6.095580 TGACAACTACACAACCTAATGCAAAA 59.904 34.615 0.00 0.00 0.00 2.44
124 125 6.270064 ACAACTACACAACCTAATGCAAAAC 58.730 36.000 0.00 0.00 0.00 2.43
125 126 6.127591 ACAACTACACAACCTAATGCAAAACA 60.128 34.615 0.00 0.00 0.00 2.83
126 127 6.072112 ACTACACAACCTAATGCAAAACAG 57.928 37.500 0.00 0.00 0.00 3.16
127 128 5.592688 ACTACACAACCTAATGCAAAACAGT 59.407 36.000 0.00 0.00 0.00 3.55
128 129 4.681744 ACACAACCTAATGCAAAACAGTG 58.318 39.130 0.00 0.00 0.00 3.66
129 130 4.050553 CACAACCTAATGCAAAACAGTGG 58.949 43.478 0.00 0.00 0.00 4.00
130 131 3.059166 CAACCTAATGCAAAACAGTGGC 58.941 45.455 0.00 0.00 0.00 5.01
131 132 2.597455 ACCTAATGCAAAACAGTGGCT 58.403 42.857 0.00 0.00 0.00 4.75
132 133 3.761897 ACCTAATGCAAAACAGTGGCTA 58.238 40.909 0.00 0.00 0.00 3.93
133 134 4.344104 ACCTAATGCAAAACAGTGGCTAT 58.656 39.130 0.00 0.00 0.00 2.97
134 135 4.772100 ACCTAATGCAAAACAGTGGCTATT 59.228 37.500 0.00 0.00 0.00 1.73
135 136 5.245977 ACCTAATGCAAAACAGTGGCTATTT 59.754 36.000 0.00 0.00 0.00 1.40
136 137 6.435904 ACCTAATGCAAAACAGTGGCTATTTA 59.564 34.615 0.00 0.00 0.00 1.40
137 138 6.751888 CCTAATGCAAAACAGTGGCTATTTAC 59.248 38.462 0.00 0.00 0.00 2.01
138 139 4.513198 TGCAAAACAGTGGCTATTTACC 57.487 40.909 0.00 0.00 0.00 2.85
139 140 3.257127 TGCAAAACAGTGGCTATTTACCC 59.743 43.478 0.00 0.00 0.00 3.69
140 141 3.509967 GCAAAACAGTGGCTATTTACCCT 59.490 43.478 0.00 0.00 0.00 4.34
141 142 4.380550 GCAAAACAGTGGCTATTTACCCTC 60.381 45.833 0.00 0.00 0.00 4.30
142 143 4.650972 AAACAGTGGCTATTTACCCTCA 57.349 40.909 0.00 0.00 0.00 3.86
143 144 4.862641 AACAGTGGCTATTTACCCTCAT 57.137 40.909 0.00 0.00 0.00 2.90
144 145 4.156455 ACAGTGGCTATTTACCCTCATG 57.844 45.455 0.00 0.00 0.00 3.07
145 146 3.117888 ACAGTGGCTATTTACCCTCATGG 60.118 47.826 0.00 0.00 41.37 3.66
146 147 3.136443 CAGTGGCTATTTACCCTCATGGA 59.864 47.826 0.00 0.00 38.00 3.41
147 148 3.785887 AGTGGCTATTTACCCTCATGGAA 59.214 43.478 0.00 0.00 38.00 3.53
148 149 4.416848 AGTGGCTATTTACCCTCATGGAAT 59.583 41.667 0.00 0.00 38.00 3.01
149 150 5.103515 AGTGGCTATTTACCCTCATGGAATT 60.104 40.000 0.00 0.00 38.00 2.17
150 151 6.102615 AGTGGCTATTTACCCTCATGGAATTA 59.897 38.462 0.00 0.00 38.00 1.40
151 152 6.948309 GTGGCTATTTACCCTCATGGAATTAT 59.052 38.462 0.00 0.00 38.00 1.28
152 153 7.451566 GTGGCTATTTACCCTCATGGAATTATT 59.548 37.037 0.00 0.00 38.00 1.40
153 154 8.674173 TGGCTATTTACCCTCATGGAATTATTA 58.326 33.333 0.00 0.00 38.00 0.98
154 155 9.700831 GGCTATTTACCCTCATGGAATTATTAT 57.299 33.333 0.00 0.00 38.00 1.28
160 161 9.519191 TTACCCTCATGGAATTATTATCACATG 57.481 33.333 0.00 0.00 37.60 3.21
161 162 6.950041 ACCCTCATGGAATTATTATCACATGG 59.050 38.462 0.00 0.00 37.05 3.66
162 163 6.950041 CCCTCATGGAATTATTATCACATGGT 59.050 38.462 0.00 0.00 37.05 3.55
163 164 8.108999 CCCTCATGGAATTATTATCACATGGTA 58.891 37.037 0.00 0.00 37.05 3.25
164 165 9.690913 CCTCATGGAATTATTATCACATGGTAT 57.309 33.333 0.00 0.00 37.05 2.73
175 176 7.652300 TTATCACATGGTATATTCGTCAAGC 57.348 36.000 0.00 0.00 0.00 4.01
176 177 5.276461 TCACATGGTATATTCGTCAAGCT 57.724 39.130 0.00 0.00 0.00 3.74
177 178 5.670485 TCACATGGTATATTCGTCAAGCTT 58.330 37.500 0.00 0.00 0.00 3.74
178 179 6.112734 TCACATGGTATATTCGTCAAGCTTT 58.887 36.000 0.00 0.00 0.00 3.51
179 180 6.597672 TCACATGGTATATTCGTCAAGCTTTT 59.402 34.615 0.00 0.00 0.00 2.27
180 181 6.907212 CACATGGTATATTCGTCAAGCTTTTC 59.093 38.462 0.00 0.00 0.00 2.29
181 182 6.823689 ACATGGTATATTCGTCAAGCTTTTCT 59.176 34.615 0.00 0.00 0.00 2.52
182 183 6.662414 TGGTATATTCGTCAAGCTTTTCTG 57.338 37.500 0.00 0.00 0.00 3.02
183 184 6.170506 TGGTATATTCGTCAAGCTTTTCTGT 58.829 36.000 0.00 0.00 0.00 3.41
184 185 6.312918 TGGTATATTCGTCAAGCTTTTCTGTC 59.687 38.462 0.00 0.00 0.00 3.51
185 186 6.312918 GGTATATTCGTCAAGCTTTTCTGTCA 59.687 38.462 0.00 0.00 0.00 3.58
186 187 3.944422 TTCGTCAAGCTTTTCTGTCAC 57.056 42.857 0.00 0.00 0.00 3.67
187 188 3.179443 TCGTCAAGCTTTTCTGTCACT 57.821 42.857 0.00 0.00 0.00 3.41
188 189 3.123804 TCGTCAAGCTTTTCTGTCACTC 58.876 45.455 0.00 0.00 0.00 3.51
189 190 3.126831 CGTCAAGCTTTTCTGTCACTCT 58.873 45.455 0.00 0.00 0.00 3.24
190 191 3.557595 CGTCAAGCTTTTCTGTCACTCTT 59.442 43.478 0.00 0.00 0.00 2.85
191 192 4.034510 CGTCAAGCTTTTCTGTCACTCTTT 59.965 41.667 0.00 0.00 0.00 2.52
192 193 5.269313 GTCAAGCTTTTCTGTCACTCTTTG 58.731 41.667 0.00 0.00 0.00 2.77
193 194 4.336433 TCAAGCTTTTCTGTCACTCTTTGG 59.664 41.667 0.00 0.00 0.00 3.28
194 195 3.217626 AGCTTTTCTGTCACTCTTTGGG 58.782 45.455 0.00 0.00 0.00 4.12
195 196 2.287849 GCTTTTCTGTCACTCTTTGGGC 60.288 50.000 0.00 0.00 0.00 5.36
196 197 1.593196 TTTCTGTCACTCTTTGGGCG 58.407 50.000 0.00 0.00 0.00 6.13
197 198 0.756294 TTCTGTCACTCTTTGGGCGA 59.244 50.000 0.00 0.00 0.00 5.54
198 199 0.976641 TCTGTCACTCTTTGGGCGAT 59.023 50.000 0.00 0.00 0.00 4.58
199 200 2.176045 TCTGTCACTCTTTGGGCGATA 58.824 47.619 0.00 0.00 0.00 2.92
200 201 2.766263 TCTGTCACTCTTTGGGCGATAT 59.234 45.455 0.00 0.00 0.00 1.63
201 202 2.868583 CTGTCACTCTTTGGGCGATATG 59.131 50.000 0.00 0.00 0.00 1.78
202 203 2.213499 GTCACTCTTTGGGCGATATGG 58.787 52.381 0.00 0.00 0.00 2.74
203 204 1.140852 TCACTCTTTGGGCGATATGGG 59.859 52.381 0.00 0.00 0.00 4.00
204 205 0.179018 ACTCTTTGGGCGATATGGGC 60.179 55.000 2.40 2.40 0.00 5.36
205 206 0.179020 CTCTTTGGGCGATATGGGCA 60.179 55.000 13.23 0.00 0.00 5.36
206 207 0.179020 TCTTTGGGCGATATGGGCAG 60.179 55.000 13.23 2.59 0.00 4.85
207 208 1.799258 CTTTGGGCGATATGGGCAGC 61.799 60.000 13.23 0.00 0.00 5.25
208 209 4.624364 TGGGCGATATGGGCAGCG 62.624 66.667 13.23 0.00 0.00 5.18
213 214 4.996434 GATATGGGCAGCGCGGCT 62.996 66.667 30.64 14.92 40.77 5.52
214 215 3.589654 GATATGGGCAGCGCGGCTA 62.590 63.158 30.64 21.23 36.40 3.93
215 216 2.859273 GATATGGGCAGCGCGGCTAT 62.859 60.000 30.64 25.66 44.10 2.97
216 217 2.469465 ATATGGGCAGCGCGGCTATT 62.469 55.000 30.64 17.57 41.84 1.73
217 218 2.674563 TATGGGCAGCGCGGCTATTT 62.675 55.000 30.64 15.91 41.84 1.40
218 219 3.953887 GGGCAGCGCGGCTATTTC 61.954 66.667 30.64 14.36 36.40 2.17
254 255 3.597728 CCCTAGAGCTCCGCCGAC 61.598 72.222 10.93 0.00 0.00 4.79
277 279 4.558496 CGGGTCATGCAAAAATACTGTTGT 60.558 41.667 0.00 0.00 0.00 3.32
290 292 4.776647 GTTGTTGCCGGATGCCGC 62.777 66.667 5.05 0.00 46.86 6.53
305 307 2.365105 CGCAAGGGAGTAGGGGGA 60.365 66.667 0.00 0.00 0.00 4.81
309 311 1.306739 AAGGGAGTAGGGGGAACGG 60.307 63.158 0.00 0.00 0.00 4.44
360 362 5.048573 GGTACATACTTAGGTAGCTCAGCTC 60.049 48.000 0.00 0.00 40.44 4.09
368 370 2.836981 AGGTAGCTCAGCTCTTGTCATT 59.163 45.455 0.00 0.00 40.44 2.57
373 375 2.354503 GCTCAGCTCTTGTCATTGGAGA 60.355 50.000 0.00 0.00 0.00 3.71
376 378 3.516700 TCAGCTCTTGTCATTGGAGATGA 59.483 43.478 12.00 12.00 45.89 2.92
377 379 4.019950 TCAGCTCTTGTCATTGGAGATGAA 60.020 41.667 13.02 2.68 45.37 2.57
378 380 4.698780 CAGCTCTTGTCATTGGAGATGAAA 59.301 41.667 9.26 0.00 43.47 2.69
382 384 6.519679 TCTTGTCATTGGAGATGAAAATGG 57.480 37.500 0.00 0.00 33.14 3.16
384 386 7.174413 TCTTGTCATTGGAGATGAAAATGGTA 58.826 34.615 0.00 0.00 33.14 3.25
432 437 1.606313 GCCCTAGCCCTTGCACAAA 60.606 57.895 0.00 0.00 41.13 2.83
535 551 8.914654 CAATTATCAGCGAAATCAAACTTCAAA 58.085 29.630 0.00 0.00 0.00 2.69
602 618 9.495572 AGTTAATTATGAGGCTCATAGTTTAGC 57.504 33.333 35.18 30.40 40.13 3.09
617 633 4.682787 AGTTTAGCCAAGTTTGCACTTTC 58.317 39.130 1.33 0.00 40.66 2.62
619 635 5.105351 AGTTTAGCCAAGTTTGCACTTTCTT 60.105 36.000 1.33 0.00 40.66 2.52
626 642 5.067805 CCAAGTTTGCACTTTCTTTAGGTCT 59.932 40.000 0.00 0.00 40.66 3.85
629 645 6.827727 AGTTTGCACTTTCTTTAGGTCTAGA 58.172 36.000 0.00 0.00 0.00 2.43
631 647 7.226918 AGTTTGCACTTTCTTTAGGTCTAGAAC 59.773 37.037 0.00 0.00 30.53 3.01
659 1308 2.250921 TGTTTGGCCAATCCCATGAT 57.749 45.000 21.26 0.00 34.21 2.45
672 1321 7.472381 GCCAATCCCATGATCAAATTTGTATCT 60.472 37.037 17.47 2.08 0.00 1.98
715 1364 7.178805 TGGTGAATAATAAACTTGGTTTACCCC 59.821 37.037 5.21 0.00 40.16 4.95
716 1365 7.364056 GGTGAATAATAAACTTGGTTTACCCCC 60.364 40.741 5.21 0.00 40.16 5.40
764 1414 2.098443 GCAAAGTTTCCAAAGGTGACGA 59.902 45.455 0.00 0.00 0.00 4.20
814 1467 3.743886 GGAAGCGTCCGTTATTTTTCTG 58.256 45.455 1.94 0.00 33.05 3.02
1656 2421 0.252742 TCTTCAAGGAGGGGGAGGTC 60.253 60.000 0.00 0.00 0.00 3.85
1660 2425 1.083141 AAGGAGGGGGAGGTCTTCC 59.917 63.158 0.00 0.00 46.00 3.46
1974 2828 5.858049 GCGTGTCATCATTTCTGAATTTTCA 59.142 36.000 0.00 0.00 34.37 2.69
2019 2873 2.867429 GCAAGTTGCATCCATACACAC 58.133 47.619 22.90 0.00 44.26 3.82
2020 2874 2.228582 GCAAGTTGCATCCATACACACA 59.771 45.455 22.90 0.00 44.26 3.72
2213 3155 4.498682 CCTTTTTCAGTCAAGCCAGTTGAG 60.499 45.833 0.00 0.00 46.18 3.02
2435 3399 0.103390 GGAGGCCGTAAGAAGAGCTC 59.897 60.000 5.27 5.27 43.02 4.09
2448 3412 1.226717 GAGCTCGCGAGATCGGTTT 60.227 57.895 38.74 14.00 40.84 3.27
2451 3415 1.878088 AGCTCGCGAGATCGGTTTATA 59.122 47.619 38.74 0.00 40.84 0.98
2452 3416 2.095668 AGCTCGCGAGATCGGTTTATAG 60.096 50.000 38.74 9.62 40.84 1.31
2453 3417 2.095869 GCTCGCGAGATCGGTTTATAGA 60.096 50.000 38.74 0.00 40.84 1.98
2454 3418 3.426426 GCTCGCGAGATCGGTTTATAGAT 60.426 47.826 38.74 0.00 40.84 1.98
2455 3419 4.724303 CTCGCGAGATCGGTTTATAGATT 58.276 43.478 32.06 0.00 40.84 2.40
2488 3459 6.322712 ACCTTGGATTGCCGCTTAATAATTAA 59.677 34.615 0.00 0.00 36.79 1.40
2775 3777 3.541950 TTCTCGCCTGCTGCTGCTT 62.542 57.895 17.00 0.00 40.48 3.91
2776 3778 3.497932 CTCGCCTGCTGCTGCTTC 61.498 66.667 17.00 4.90 40.48 3.86
2783 3785 1.363145 CTGCTGCTGCTTCTGCTCTC 61.363 60.000 17.00 0.00 40.48 3.20
2791 3793 1.015868 GCTTCTGCTCTCTTCATGCC 58.984 55.000 0.00 0.00 36.03 4.40
2937 3959 4.914420 CTGTAGCGAGCCGAGCCG 62.914 72.222 0.00 0.00 34.64 5.52
2959 3981 1.225704 CCATCAGGCAGGGAGAACC 59.774 63.158 0.00 0.00 40.67 3.62
2962 3988 0.329596 ATCAGGCAGGGAGAACCAAC 59.670 55.000 0.00 0.00 43.89 3.77
3106 4135 4.539870 CGCAAACAAGAATATATGCAGGG 58.460 43.478 0.00 0.00 33.55 4.45
3116 4145 2.642974 ATATGCAGGGCAGGGGAGGA 62.643 60.000 0.00 0.00 43.65 3.71
3119 4148 2.935481 CAGGGCAGGGGAGGAACA 60.935 66.667 0.00 0.00 0.00 3.18
3121 4150 2.035783 GGGCAGGGGAGGAACAAC 59.964 66.667 0.00 0.00 0.00 3.32
3150 4182 2.760634 TACGCATGCTTTGGAAGAGA 57.239 45.000 17.13 0.00 0.00 3.10
3157 4189 5.397326 GCATGCTTTGGAAGAGAAAACTAG 58.603 41.667 11.37 0.00 0.00 2.57
3195 4228 4.489810 CAGGAGCGCTGAAATAGTATAGG 58.510 47.826 18.48 0.00 0.00 2.57
3284 4320 9.670442 TCATGTACTTTTATCTTATACTCCCCT 57.330 33.333 0.00 0.00 0.00 4.79
3287 4323 8.636213 TGTACTTTTATCTTATACTCCCCTTCG 58.364 37.037 0.00 0.00 0.00 3.79
3288 4324 7.672122 ACTTTTATCTTATACTCCCCTTCGT 57.328 36.000 0.00 0.00 0.00 3.85
3289 4325 8.773033 ACTTTTATCTTATACTCCCCTTCGTA 57.227 34.615 0.00 0.00 0.00 3.43
3290 4326 9.205513 ACTTTTATCTTATACTCCCCTTCGTAA 57.794 33.333 0.00 0.00 0.00 3.18
3292 4328 9.822185 TTTTATCTTATACTCCCCTTCGTAAAC 57.178 33.333 0.00 0.00 0.00 2.01
3293 4329 8.773033 TTATCTTATACTCCCCTTCGTAAACT 57.227 34.615 0.00 0.00 0.00 2.66
3294 4330 9.866655 TTATCTTATACTCCCCTTCGTAAACTA 57.133 33.333 0.00 0.00 0.00 2.24
3295 4331 8.773033 ATCTTATACTCCCCTTCGTAAACTAA 57.227 34.615 0.00 0.00 0.00 2.24
3296 4332 8.773033 TCTTATACTCCCCTTCGTAAACTAAT 57.227 34.615 0.00 0.00 0.00 1.73
3297 4333 9.866655 TCTTATACTCCCCTTCGTAAACTAATA 57.133 33.333 0.00 0.00 0.00 0.98
3303 4339 9.828039 ACTCCCCTTCGTAAACTAATATAAAAG 57.172 33.333 0.00 0.00 0.00 2.27
3304 4340 9.828039 CTCCCCTTCGTAAACTAATATAAAAGT 57.172 33.333 0.00 0.00 0.00 2.66
3305 4341 9.603921 TCCCCTTCGTAAACTAATATAAAAGTG 57.396 33.333 0.00 0.00 0.00 3.16
3306 4342 9.387257 CCCCTTCGTAAACTAATATAAAAGTGT 57.613 33.333 0.00 0.00 0.00 3.55
3356 4392 7.772332 ACGCTCTTATATTTGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
3357 4393 7.553334 ACGCTCTTATATTTGTTTACAGAGGA 58.447 34.615 0.00 0.00 0.00 3.71
3358 4394 8.038944 ACGCTCTTATATTTGTTTACAGAGGAA 58.961 33.333 0.00 0.00 0.00 3.36
3359 4395 8.543774 CGCTCTTATATTTGTTTACAGAGGAAG 58.456 37.037 0.00 0.00 0.00 3.46
3360 4396 8.338986 GCTCTTATATTTGTTTACAGAGGAAGC 58.661 37.037 0.00 0.00 0.00 3.86
3361 4397 9.383519 CTCTTATATTTGTTTACAGAGGAAGCA 57.616 33.333 0.00 0.00 0.00 3.91
3362 4398 9.383519 TCTTATATTTGTTTACAGAGGAAGCAG 57.616 33.333 0.00 0.00 0.00 4.24
3363 4399 9.167311 CTTATATTTGTTTACAGAGGAAGCAGT 57.833 33.333 0.00 0.00 0.00 4.40
3364 4400 5.948992 ATTTGTTTACAGAGGAAGCAGTC 57.051 39.130 0.00 0.00 0.00 3.51
3365 4401 3.026630 TGTTTACAGAGGAAGCAGTCG 57.973 47.619 0.00 0.00 0.00 4.18
3395 4431 2.750712 GCTTTTCTGCGTATTTACCCCA 59.249 45.455 0.00 0.00 0.00 4.96
3407 4443 6.200097 GCGTATTTACCCCATTTATTGCAAAG 59.800 38.462 1.71 0.00 0.00 2.77
3412 4448 7.726033 TTACCCCATTTATTGCAAAGTACAT 57.274 32.000 1.71 0.00 0.00 2.29
3416 4452 5.811613 CCCATTTATTGCAAAGTACATGGTG 59.188 40.000 17.81 9.86 0.00 4.17
3437 4473 5.290158 GGTGTTTAGACATGGTGTATACACG 59.710 44.000 25.69 16.43 41.37 4.49
3462 4498 1.924524 CACATACCAAACTACTCCGCG 59.075 52.381 0.00 0.00 0.00 6.46
3549 4585 7.427989 TCTCATATGCATGCTCATATCCTTA 57.572 36.000 20.33 0.00 37.50 2.69
3553 4589 7.713942 TCATATGCATGCTCATATCCTTATCAC 59.286 37.037 20.33 0.00 37.50 3.06
3561 4597 8.442632 TGCTCATATCCTTATCACAAAAAGAG 57.557 34.615 0.00 0.00 0.00 2.85
3577 4613 3.393089 AAGAGTATAGGATTGCGCTGG 57.607 47.619 9.73 0.00 0.00 4.85
3583 4619 1.131638 TAGGATTGCGCTGGGATTCT 58.868 50.000 9.73 4.38 0.00 2.40
3584 4620 0.257039 AGGATTGCGCTGGGATTCTT 59.743 50.000 9.73 0.00 0.00 2.52
3585 4621 0.383231 GGATTGCGCTGGGATTCTTG 59.617 55.000 9.73 0.00 0.00 3.02
3586 4622 0.383231 GATTGCGCTGGGATTCTTGG 59.617 55.000 9.73 0.00 0.00 3.61
3587 4623 0.323725 ATTGCGCTGGGATTCTTGGT 60.324 50.000 9.73 0.00 0.00 3.67
3588 4624 0.539438 TTGCGCTGGGATTCTTGGTT 60.539 50.000 9.73 0.00 0.00 3.67
3589 4625 1.243342 TGCGCTGGGATTCTTGGTTG 61.243 55.000 9.73 0.00 0.00 3.77
3590 4626 1.508088 CGCTGGGATTCTTGGTTGC 59.492 57.895 0.00 0.00 0.00 4.17
3591 4627 1.508088 GCTGGGATTCTTGGTTGCG 59.492 57.895 0.00 0.00 0.00 4.85
3592 4628 1.244019 GCTGGGATTCTTGGTTGCGT 61.244 55.000 0.00 0.00 0.00 5.24
3593 4629 1.948611 GCTGGGATTCTTGGTTGCGTA 60.949 52.381 0.00 0.00 0.00 4.42
3594 4630 2.643551 CTGGGATTCTTGGTTGCGTAT 58.356 47.619 0.00 0.00 0.00 3.06
3595 4631 3.804036 CTGGGATTCTTGGTTGCGTATA 58.196 45.455 0.00 0.00 0.00 1.47
3596 4632 4.196193 CTGGGATTCTTGGTTGCGTATAA 58.804 43.478 0.00 0.00 0.00 0.98
3597 4633 4.590918 TGGGATTCTTGGTTGCGTATAAA 58.409 39.130 0.00 0.00 0.00 1.40
3598 4634 5.010933 TGGGATTCTTGGTTGCGTATAAAA 58.989 37.500 0.00 0.00 0.00 1.52
3619 4655 2.917713 TGGCCCCATCACTTACAAAT 57.082 45.000 0.00 0.00 0.00 2.32
3662 4698 0.392461 GACCATTACGCCCTTCAGCA 60.392 55.000 0.00 0.00 0.00 4.41
3668 4704 2.088950 TACGCCCTTCAGCACTTTAC 57.911 50.000 0.00 0.00 0.00 2.01
3700 4736 7.962964 ATATCATTTACACATTCCTGTACCG 57.037 36.000 0.00 0.00 33.14 4.02
3703 4739 5.815222 TCATTTACACATTCCTGTACCGATG 59.185 40.000 0.00 0.00 33.14 3.84
3744 4780 9.838339 CAATACTCCTCAACCATTTATCTTAGT 57.162 33.333 0.00 0.00 0.00 2.24
3755 4791 5.368989 CATTTATCTTAGTGTCCACCCCTC 58.631 45.833 0.00 0.00 0.00 4.30
3768 4804 1.415289 CACCCCTCGGTAAATCCCTAC 59.585 57.143 0.00 0.00 42.04 3.18
3815 4851 4.096532 GGGAATAACTAGCAAAAGAGCACC 59.903 45.833 0.00 0.00 36.85 5.01
3819 4855 1.202806 ACTAGCAAAAGAGCACCTGCA 60.203 47.619 0.00 0.00 45.16 4.41
3822 4858 1.000506 AGCAAAAGAGCACCTGCATTG 59.999 47.619 0.00 1.26 45.16 2.82
3866 4903 5.192927 CACACCTCCTAATCAAATAGGCAA 58.807 41.667 0.00 0.00 41.93 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.889186 ATGAGTTGGGTGAACCGCAC 60.889 55.000 0.00 0.00 46.98 5.34
2 3 1.586154 CCATGAGTTGGGTGAACCGC 61.586 60.000 0.00 0.00 44.64 5.68
5 6 1.826385 CCTCCATGAGTTGGGTGAAC 58.174 55.000 0.00 0.00 46.45 3.18
7 8 1.133181 TGCCTCCATGAGTTGGGTGA 61.133 55.000 0.00 0.00 46.45 4.02
8 9 0.962356 GTGCCTCCATGAGTTGGGTG 60.962 60.000 0.00 0.00 46.45 4.61
9 10 1.136329 AGTGCCTCCATGAGTTGGGT 61.136 55.000 0.00 0.00 46.45 4.51
10 11 0.393537 GAGTGCCTCCATGAGTTGGG 60.394 60.000 0.00 0.00 46.45 4.12
21 22 4.136978 TCCAGAAGGGAGTGCCTC 57.863 61.111 2.56 0.00 42.15 4.70
28 29 0.911769 ATCGTGCATTCCAGAAGGGA 59.088 50.000 0.00 0.00 46.61 4.20
29 30 1.019673 CATCGTGCATTCCAGAAGGG 58.980 55.000 0.00 0.00 34.83 3.95
30 31 1.742761 ACATCGTGCATTCCAGAAGG 58.257 50.000 0.00 0.00 0.00 3.46
31 32 3.837213 AAACATCGTGCATTCCAGAAG 57.163 42.857 0.00 0.00 0.00 2.85
32 33 3.689161 CCTAAACATCGTGCATTCCAGAA 59.311 43.478 0.00 0.00 0.00 3.02
33 34 3.270027 CCTAAACATCGTGCATTCCAGA 58.730 45.455 0.00 0.00 0.00 3.86
34 35 3.009723 ACCTAAACATCGTGCATTCCAG 58.990 45.455 0.00 0.00 0.00 3.86
35 36 2.746904 CACCTAAACATCGTGCATTCCA 59.253 45.455 0.00 0.00 0.00 3.53
36 37 3.405170 CACCTAAACATCGTGCATTCC 57.595 47.619 0.00 0.00 0.00 3.01
42 43 2.159531 CCATGTGCACCTAAACATCGTG 60.160 50.000 15.69 0.00 34.81 4.35
43 44 2.083774 CCATGTGCACCTAAACATCGT 58.916 47.619 15.69 0.00 34.81 3.73
44 45 1.401552 CCCATGTGCACCTAAACATCG 59.598 52.381 15.69 0.00 34.81 3.84
45 46 1.134946 GCCCATGTGCACCTAAACATC 59.865 52.381 15.69 0.00 34.81 3.06
46 47 1.185315 GCCCATGTGCACCTAAACAT 58.815 50.000 15.69 0.00 37.50 2.71
47 48 0.897863 GGCCCATGTGCACCTAAACA 60.898 55.000 15.69 0.00 0.00 2.83
48 49 0.611896 AGGCCCATGTGCACCTAAAC 60.612 55.000 15.69 0.74 0.00 2.01
49 50 0.114168 AAGGCCCATGTGCACCTAAA 59.886 50.000 15.69 0.00 0.00 1.85
50 51 0.611618 CAAGGCCCATGTGCACCTAA 60.612 55.000 15.69 0.00 0.00 2.69
51 52 1.001020 CAAGGCCCATGTGCACCTA 60.001 57.895 15.69 0.00 0.00 3.08
52 53 2.283388 CAAGGCCCATGTGCACCT 60.283 61.111 15.69 0.23 0.00 4.00
53 54 3.384532 CCAAGGCCCATGTGCACC 61.385 66.667 15.69 0.00 0.00 5.01
54 55 2.601367 ACCAAGGCCCATGTGCAC 60.601 61.111 10.75 10.75 0.00 4.57
55 56 2.601067 CACCAAGGCCCATGTGCA 60.601 61.111 0.00 0.00 0.00 4.57
56 57 1.259840 ATTCACCAAGGCCCATGTGC 61.260 55.000 0.00 0.00 0.00 4.57
57 58 0.533491 CATTCACCAAGGCCCATGTG 59.467 55.000 0.00 4.21 0.00 3.21
58 59 0.409092 TCATTCACCAAGGCCCATGT 59.591 50.000 0.00 0.00 0.00 3.21
59 60 1.108776 CTCATTCACCAAGGCCCATG 58.891 55.000 0.00 0.00 0.00 3.66
60 61 0.032813 CCTCATTCACCAAGGCCCAT 60.033 55.000 0.00 0.00 0.00 4.00
61 62 1.139498 TCCTCATTCACCAAGGCCCA 61.139 55.000 0.00 0.00 0.00 5.36
62 63 0.259938 ATCCTCATTCACCAAGGCCC 59.740 55.000 0.00 0.00 0.00 5.80
63 64 2.149973 AATCCTCATTCACCAAGGCC 57.850 50.000 0.00 0.00 0.00 5.19
64 65 3.067320 GCTAAATCCTCATTCACCAAGGC 59.933 47.826 0.00 0.00 0.00 4.35
65 66 3.313526 CGCTAAATCCTCATTCACCAAGG 59.686 47.826 0.00 0.00 0.00 3.61
66 67 3.242870 GCGCTAAATCCTCATTCACCAAG 60.243 47.826 0.00 0.00 0.00 3.61
67 68 2.682856 GCGCTAAATCCTCATTCACCAA 59.317 45.455 0.00 0.00 0.00 3.67
68 69 2.288666 GCGCTAAATCCTCATTCACCA 58.711 47.619 0.00 0.00 0.00 4.17
69 70 2.288666 TGCGCTAAATCCTCATTCACC 58.711 47.619 9.73 0.00 0.00 4.02
70 71 4.355543 TTTGCGCTAAATCCTCATTCAC 57.644 40.909 9.73 0.00 0.00 3.18
71 72 4.380444 GGTTTTGCGCTAAATCCTCATTCA 60.380 41.667 19.41 0.00 35.92 2.57
72 73 4.105486 GGTTTTGCGCTAAATCCTCATTC 58.895 43.478 19.41 4.76 35.92 2.67
73 74 3.763897 AGGTTTTGCGCTAAATCCTCATT 59.236 39.130 21.28 2.60 42.24 2.57
74 75 3.129287 CAGGTTTTGCGCTAAATCCTCAT 59.871 43.478 23.98 8.90 43.43 2.90
75 76 2.487762 CAGGTTTTGCGCTAAATCCTCA 59.512 45.455 23.98 2.33 43.43 3.86
76 77 2.159379 CCAGGTTTTGCGCTAAATCCTC 60.159 50.000 23.98 12.38 43.43 3.71
77 78 1.818674 CCAGGTTTTGCGCTAAATCCT 59.181 47.619 21.28 21.91 45.22 3.24
78 79 1.544246 ACCAGGTTTTGCGCTAAATCC 59.456 47.619 21.28 20.41 38.07 3.01
79 80 2.227865 TCACCAGGTTTTGCGCTAAATC 59.772 45.455 19.41 18.74 0.00 2.17
80 81 2.030274 GTCACCAGGTTTTGCGCTAAAT 60.030 45.455 19.41 2.50 0.00 1.40
81 82 1.335496 GTCACCAGGTTTTGCGCTAAA 59.665 47.619 12.99 12.99 0.00 1.85
82 83 0.948678 GTCACCAGGTTTTGCGCTAA 59.051 50.000 9.73 3.97 0.00 3.09
83 84 0.179043 TGTCACCAGGTTTTGCGCTA 60.179 50.000 9.73 0.00 0.00 4.26
84 85 1.034838 TTGTCACCAGGTTTTGCGCT 61.035 50.000 9.73 0.00 0.00 5.92
85 86 0.869880 GTTGTCACCAGGTTTTGCGC 60.870 55.000 0.00 0.00 0.00 6.09
86 87 0.738389 AGTTGTCACCAGGTTTTGCG 59.262 50.000 0.00 0.00 0.00 4.85
87 88 2.685897 TGTAGTTGTCACCAGGTTTTGC 59.314 45.455 0.00 0.00 0.00 3.68
88 89 3.692101 TGTGTAGTTGTCACCAGGTTTTG 59.308 43.478 0.00 0.00 35.25 2.44
89 90 3.958018 TGTGTAGTTGTCACCAGGTTTT 58.042 40.909 0.00 0.00 35.25 2.43
90 91 3.637911 TGTGTAGTTGTCACCAGGTTT 57.362 42.857 0.00 0.00 35.25 3.27
91 92 3.275999 GTTGTGTAGTTGTCACCAGGTT 58.724 45.455 0.00 0.00 35.25 3.50
92 93 2.420967 GGTTGTGTAGTTGTCACCAGGT 60.421 50.000 0.00 0.00 35.25 4.00
93 94 2.158813 AGGTTGTGTAGTTGTCACCAGG 60.159 50.000 0.00 0.00 35.25 4.45
94 95 3.194005 AGGTTGTGTAGTTGTCACCAG 57.806 47.619 0.00 0.00 35.25 4.00
95 96 4.757019 TTAGGTTGTGTAGTTGTCACCA 57.243 40.909 0.00 0.00 35.25 4.17
96 97 4.083484 GCATTAGGTTGTGTAGTTGTCACC 60.083 45.833 0.00 0.00 35.25 4.02
97 98 4.513692 TGCATTAGGTTGTGTAGTTGTCAC 59.486 41.667 0.00 0.00 36.48 3.67
98 99 4.709250 TGCATTAGGTTGTGTAGTTGTCA 58.291 39.130 0.00 0.00 0.00 3.58
99 100 5.682943 TTGCATTAGGTTGTGTAGTTGTC 57.317 39.130 0.00 0.00 0.00 3.18
100 101 6.127591 TGTTTTGCATTAGGTTGTGTAGTTGT 60.128 34.615 0.00 0.00 0.00 3.32
101 102 6.269315 TGTTTTGCATTAGGTTGTGTAGTTG 58.731 36.000 0.00 0.00 0.00 3.16
102 103 6.096282 ACTGTTTTGCATTAGGTTGTGTAGTT 59.904 34.615 0.00 0.00 0.00 2.24
103 104 5.592688 ACTGTTTTGCATTAGGTTGTGTAGT 59.407 36.000 0.00 0.00 0.00 2.73
104 105 5.914635 CACTGTTTTGCATTAGGTTGTGTAG 59.085 40.000 0.00 0.00 0.00 2.74
105 106 5.221145 CCACTGTTTTGCATTAGGTTGTGTA 60.221 40.000 0.00 0.00 0.00 2.90
106 107 4.441356 CCACTGTTTTGCATTAGGTTGTGT 60.441 41.667 0.00 0.00 0.00 3.72
107 108 4.050553 CCACTGTTTTGCATTAGGTTGTG 58.949 43.478 0.00 0.00 0.00 3.33
108 109 3.492482 GCCACTGTTTTGCATTAGGTTGT 60.492 43.478 0.00 0.00 0.00 3.32
109 110 3.059166 GCCACTGTTTTGCATTAGGTTG 58.941 45.455 0.00 0.00 0.00 3.77
110 111 2.965147 AGCCACTGTTTTGCATTAGGTT 59.035 40.909 0.00 0.00 0.00 3.50
111 112 2.597455 AGCCACTGTTTTGCATTAGGT 58.403 42.857 0.00 0.00 0.00 3.08
112 113 4.989279 ATAGCCACTGTTTTGCATTAGG 57.011 40.909 0.00 0.00 0.00 2.69
113 114 6.751888 GGTAAATAGCCACTGTTTTGCATTAG 59.248 38.462 0.00 0.00 0.00 1.73
114 115 6.350612 GGGTAAATAGCCACTGTTTTGCATTA 60.351 38.462 3.84 0.00 43.19 1.90
115 116 5.478407 GGTAAATAGCCACTGTTTTGCATT 58.522 37.500 0.00 0.00 0.00 3.56
116 117 4.081697 GGGTAAATAGCCACTGTTTTGCAT 60.082 41.667 3.84 0.00 43.19 3.96
117 118 3.257127 GGGTAAATAGCCACTGTTTTGCA 59.743 43.478 3.84 0.00 43.19 4.08
118 119 3.509967 AGGGTAAATAGCCACTGTTTTGC 59.490 43.478 11.00 0.00 46.03 3.68
119 120 4.764823 TGAGGGTAAATAGCCACTGTTTTG 59.235 41.667 11.00 0.00 46.03 2.44
120 121 4.993028 TGAGGGTAAATAGCCACTGTTTT 58.007 39.130 11.00 0.00 46.03 2.43
121 122 4.650972 TGAGGGTAAATAGCCACTGTTT 57.349 40.909 11.00 0.00 46.03 2.83
122 123 4.526970 CATGAGGGTAAATAGCCACTGTT 58.473 43.478 11.00 0.00 46.03 3.16
123 124 3.117888 CCATGAGGGTAAATAGCCACTGT 60.118 47.826 11.00 0.00 46.03 3.55
124 125 3.136443 TCCATGAGGGTAAATAGCCACTG 59.864 47.826 11.00 5.19 46.03 3.66
125 126 3.393687 TCCATGAGGGTAAATAGCCACT 58.606 45.455 11.00 0.00 46.03 4.00
126 127 3.857157 TCCATGAGGGTAAATAGCCAC 57.143 47.619 11.00 5.43 46.03 5.01
127 128 5.402054 AATTCCATGAGGGTAAATAGCCA 57.598 39.130 11.00 0.00 46.03 4.75
128 129 9.700831 ATAATAATTCCATGAGGGTAAATAGCC 57.299 33.333 0.00 0.31 44.02 3.93
134 135 9.519191 CATGTGATAATAATTCCATGAGGGTAA 57.481 33.333 0.00 0.00 38.11 2.85
135 136 8.108999 CCATGTGATAATAATTCCATGAGGGTA 58.891 37.037 0.00 0.00 38.11 3.69
136 137 6.950041 CCATGTGATAATAATTCCATGAGGGT 59.050 38.462 0.00 0.00 38.11 4.34
137 138 6.950041 ACCATGTGATAATAATTCCATGAGGG 59.050 38.462 0.00 0.00 33.28 4.30
138 139 9.690913 ATACCATGTGATAATAATTCCATGAGG 57.309 33.333 0.00 0.00 33.28 3.86
149 150 9.366216 GCTTGACGAATATACCATGTGATAATA 57.634 33.333 0.00 0.00 0.00 0.98
150 151 8.097038 AGCTTGACGAATATACCATGTGATAAT 58.903 33.333 0.00 0.00 0.00 1.28
151 152 7.441836 AGCTTGACGAATATACCATGTGATAA 58.558 34.615 0.00 0.00 0.00 1.75
152 153 6.993079 AGCTTGACGAATATACCATGTGATA 58.007 36.000 0.00 0.00 0.00 2.15
153 154 5.858381 AGCTTGACGAATATACCATGTGAT 58.142 37.500 0.00 0.00 0.00 3.06
154 155 5.276461 AGCTTGACGAATATACCATGTGA 57.724 39.130 0.00 0.00 0.00 3.58
155 156 5.991328 AAGCTTGACGAATATACCATGTG 57.009 39.130 0.00 0.00 0.00 3.21
156 157 6.823689 AGAAAAGCTTGACGAATATACCATGT 59.176 34.615 0.00 0.00 0.00 3.21
157 158 7.128331 CAGAAAAGCTTGACGAATATACCATG 58.872 38.462 0.00 0.00 0.00 3.66
158 159 6.823689 ACAGAAAAGCTTGACGAATATACCAT 59.176 34.615 0.00 0.00 0.00 3.55
159 160 6.170506 ACAGAAAAGCTTGACGAATATACCA 58.829 36.000 0.00 0.00 0.00 3.25
160 161 6.312918 TGACAGAAAAGCTTGACGAATATACC 59.687 38.462 0.00 0.00 0.00 2.73
161 162 7.063544 AGTGACAGAAAAGCTTGACGAATATAC 59.936 37.037 0.00 0.00 0.00 1.47
162 163 7.097192 AGTGACAGAAAAGCTTGACGAATATA 58.903 34.615 0.00 0.00 0.00 0.86
163 164 5.934625 AGTGACAGAAAAGCTTGACGAATAT 59.065 36.000 0.00 0.00 0.00 1.28
164 165 5.297547 AGTGACAGAAAAGCTTGACGAATA 58.702 37.500 0.00 0.00 0.00 1.75
165 166 4.130118 AGTGACAGAAAAGCTTGACGAAT 58.870 39.130 0.00 0.00 0.00 3.34
166 167 3.531538 AGTGACAGAAAAGCTTGACGAA 58.468 40.909 0.00 0.00 0.00 3.85
167 168 3.123804 GAGTGACAGAAAAGCTTGACGA 58.876 45.455 0.00 0.00 0.00 4.20
168 169 3.126831 AGAGTGACAGAAAAGCTTGACG 58.873 45.455 0.00 0.00 0.00 4.35
169 170 5.269313 CAAAGAGTGACAGAAAAGCTTGAC 58.731 41.667 0.00 0.00 0.00 3.18
170 171 4.336433 CCAAAGAGTGACAGAAAAGCTTGA 59.664 41.667 0.00 0.00 0.00 3.02
171 172 4.498682 CCCAAAGAGTGACAGAAAAGCTTG 60.499 45.833 0.00 0.00 0.00 4.01
172 173 3.633986 CCCAAAGAGTGACAGAAAAGCTT 59.366 43.478 0.00 0.00 0.00 3.74
173 174 3.217626 CCCAAAGAGTGACAGAAAAGCT 58.782 45.455 0.00 0.00 0.00 3.74
174 175 2.287849 GCCCAAAGAGTGACAGAAAAGC 60.288 50.000 0.00 0.00 0.00 3.51
175 176 2.031682 CGCCCAAAGAGTGACAGAAAAG 60.032 50.000 0.00 0.00 0.00 2.27
176 177 1.946768 CGCCCAAAGAGTGACAGAAAA 59.053 47.619 0.00 0.00 0.00 2.29
177 178 1.140052 TCGCCCAAAGAGTGACAGAAA 59.860 47.619 0.00 0.00 0.00 2.52
178 179 0.756294 TCGCCCAAAGAGTGACAGAA 59.244 50.000 0.00 0.00 0.00 3.02
179 180 0.976641 ATCGCCCAAAGAGTGACAGA 59.023 50.000 0.00 0.00 0.00 3.41
180 181 2.672961 TATCGCCCAAAGAGTGACAG 57.327 50.000 0.00 0.00 0.00 3.51
181 182 2.419990 CCATATCGCCCAAAGAGTGACA 60.420 50.000 0.00 0.00 0.00 3.58
182 183 2.213499 CCATATCGCCCAAAGAGTGAC 58.787 52.381 0.00 0.00 0.00 3.67
183 184 1.140852 CCCATATCGCCCAAAGAGTGA 59.859 52.381 0.00 0.00 0.00 3.41
184 185 1.597742 CCCATATCGCCCAAAGAGTG 58.402 55.000 0.00 0.00 0.00 3.51
185 186 0.179018 GCCCATATCGCCCAAAGAGT 60.179 55.000 0.00 0.00 0.00 3.24
186 187 0.179020 TGCCCATATCGCCCAAAGAG 60.179 55.000 0.00 0.00 0.00 2.85
187 188 0.179020 CTGCCCATATCGCCCAAAGA 60.179 55.000 0.00 0.00 0.00 2.52
188 189 1.799258 GCTGCCCATATCGCCCAAAG 61.799 60.000 0.00 0.00 0.00 2.77
189 190 1.827789 GCTGCCCATATCGCCCAAA 60.828 57.895 0.00 0.00 0.00 3.28
190 191 2.203337 GCTGCCCATATCGCCCAA 60.203 61.111 0.00 0.00 0.00 4.12
191 192 4.624364 CGCTGCCCATATCGCCCA 62.624 66.667 0.00 0.00 0.00 5.36
196 197 2.859273 ATAGCCGCGCTGCCCATATC 62.859 60.000 20.71 0.00 40.10 1.63
197 198 2.469465 AATAGCCGCGCTGCCCATAT 62.469 55.000 20.71 9.07 40.10 1.78
198 199 2.674563 AAATAGCCGCGCTGCCCATA 62.675 55.000 20.71 6.95 40.10 2.74
199 200 4.569180 AATAGCCGCGCTGCCCAT 62.569 61.111 20.71 11.20 40.10 4.00
200 201 4.794648 AAATAGCCGCGCTGCCCA 62.795 61.111 20.71 9.20 40.10 5.36
201 202 3.953887 GAAATAGCCGCGCTGCCC 61.954 66.667 20.71 1.37 40.10 5.36
202 203 4.299316 CGAAATAGCCGCGCTGCC 62.299 66.667 20.71 3.52 40.10 4.85
203 204 2.105960 ATTCGAAATAGCCGCGCTGC 62.106 55.000 16.70 16.70 40.10 5.25
204 205 0.383491 CATTCGAAATAGCCGCGCTG 60.383 55.000 5.56 0.00 40.10 5.18
205 206 1.934463 CATTCGAAATAGCCGCGCT 59.066 52.632 5.56 4.15 43.41 5.92
206 207 1.722507 GCATTCGAAATAGCCGCGC 60.723 57.895 0.00 0.00 0.00 6.86
207 208 1.125021 CTAGCATTCGAAATAGCCGCG 59.875 52.381 0.00 0.00 0.00 6.46
208 209 1.136224 GCTAGCATTCGAAATAGCCGC 60.136 52.381 21.01 16.84 35.65 6.53
209 210 2.135139 TGCTAGCATTCGAAATAGCCG 58.865 47.619 25.25 15.28 39.90 5.52
210 211 4.214119 TGATTGCTAGCATTCGAAATAGCC 59.786 41.667 26.25 16.32 39.90 3.93
211 212 5.348418 TGATTGCTAGCATTCGAAATAGC 57.652 39.130 26.25 23.20 40.81 2.97
212 213 5.380651 GCTGATTGCTAGCATTCGAAATAG 58.619 41.667 26.25 20.25 40.81 1.73
213 214 4.084380 CGCTGATTGCTAGCATTCGAAATA 60.084 41.667 26.25 13.18 41.18 1.40
214 215 3.303593 CGCTGATTGCTAGCATTCGAAAT 60.304 43.478 26.25 14.39 41.18 2.17
215 216 2.030823 CGCTGATTGCTAGCATTCGAAA 59.969 45.455 26.25 13.75 41.18 3.46
216 217 1.594397 CGCTGATTGCTAGCATTCGAA 59.406 47.619 26.25 14.31 41.18 3.71
217 218 1.211743 CGCTGATTGCTAGCATTCGA 58.788 50.000 26.25 17.56 41.18 3.71
218 219 0.383983 GCGCTGATTGCTAGCATTCG 60.384 55.000 26.25 22.10 41.18 3.34
253 254 3.153919 ACAGTATTTTTGCATGACCCGT 58.846 40.909 0.00 0.00 0.00 5.28
254 255 3.848272 ACAGTATTTTTGCATGACCCG 57.152 42.857 0.00 0.00 0.00 5.28
258 259 4.749099 GGCAACAACAGTATTTTTGCATGA 59.251 37.500 7.28 0.00 43.54 3.07
290 292 1.623542 CCGTTCCCCCTACTCCCTTG 61.624 65.000 0.00 0.00 0.00 3.61
305 307 3.964875 CAAACAGCTGCGGCCGTT 61.965 61.111 28.70 14.40 40.35 4.44
309 311 3.606065 CTCTGCAAACAGCTGCGGC 62.606 63.158 15.27 10.33 46.45 6.53
318 320 6.012658 TGTACCATTTTCATCTCTGCAAAC 57.987 37.500 0.00 0.00 0.00 2.93
322 324 7.559590 AAGTATGTACCATTTTCATCTCTGC 57.440 36.000 0.00 0.00 0.00 4.26
343 345 3.436243 ACAAGAGCTGAGCTACCTAAGT 58.564 45.455 7.08 1.23 39.88 2.24
344 346 3.445450 TGACAAGAGCTGAGCTACCTAAG 59.555 47.826 7.08 0.58 39.88 2.18
357 359 5.633830 TTTTCATCTCCAATGACAAGAGC 57.366 39.130 0.00 0.00 0.00 4.09
360 362 6.276832 ACCATTTTCATCTCCAATGACAAG 57.723 37.500 0.00 0.00 30.66 3.16
368 370 8.210946 CCTAAGTATGTACCATTTTCATCTCCA 58.789 37.037 0.00 0.00 0.00 3.86
373 375 8.714906 AGCTACCTAAGTATGTACCATTTTCAT 58.285 33.333 0.00 0.00 0.00 2.57
377 379 8.148999 GCTAAGCTACCTAAGTATGTACCATTT 58.851 37.037 0.00 0.00 0.00 2.32
378 380 7.509659 AGCTAAGCTACCTAAGTATGTACCATT 59.490 37.037 0.00 0.00 36.99 3.16
382 384 6.641723 GCAAGCTAAGCTACCTAAGTATGTAC 59.358 42.308 3.96 0.00 38.25 2.90
384 386 5.128827 TGCAAGCTAAGCTACCTAAGTATGT 59.871 40.000 11.76 0.00 38.25 2.29
388 390 3.118592 CCTGCAAGCTAAGCTACCTAAGT 60.119 47.826 11.76 0.00 38.25 2.24
389 391 3.462021 CCTGCAAGCTAAGCTACCTAAG 58.538 50.000 11.76 0.95 38.25 2.18
390 392 2.170607 CCCTGCAAGCTAAGCTACCTAA 59.829 50.000 11.76 0.00 38.25 2.69
392 394 0.543749 CCCTGCAAGCTAAGCTACCT 59.456 55.000 11.76 0.00 38.25 3.08
393 395 0.541863 TCCCTGCAAGCTAAGCTACC 59.458 55.000 11.76 0.00 38.25 3.18
394 396 1.474143 CCTCCCTGCAAGCTAAGCTAC 60.474 57.143 11.76 0.00 38.25 3.58
395 397 0.833287 CCTCCCTGCAAGCTAAGCTA 59.167 55.000 11.76 0.00 38.25 3.32
396 398 1.606531 CCTCCCTGCAAGCTAAGCT 59.393 57.895 11.76 0.00 42.56 3.74
397 399 2.117779 GCCTCCCTGCAAGCTAAGC 61.118 63.158 4.23 4.23 0.00 3.09
398 400 1.452833 GGCCTCCCTGCAAGCTAAG 60.453 63.158 0.00 0.00 0.00 2.18
399 401 2.677228 GGCCTCCCTGCAAGCTAA 59.323 61.111 0.00 0.00 0.00 3.09
432 437 8.181904 ACCACAAAATGATGTAAGTTGAGATT 57.818 30.769 0.00 0.00 30.84 2.40
568 584 8.023021 TGAGCCTCATAATTAACTACATGACT 57.977 34.615 0.00 0.00 0.00 3.41
602 618 5.067805 AGACCTAAAGAAAGTGCAAACTTGG 59.932 40.000 0.00 0.00 0.00 3.61
617 633 2.094854 ACGTGGCGTTCTAGACCTAAAG 60.095 50.000 0.00 0.00 36.35 1.85
619 635 1.538047 ACGTGGCGTTCTAGACCTAA 58.462 50.000 0.00 0.00 36.35 2.69
691 1340 7.178805 TGGGGGTAAACCAAGTTTATTATTCAC 59.821 37.037 0.81 0.00 39.64 3.18
814 1467 0.467804 TTTGCCTTTTTGCCCAGGAC 59.532 50.000 0.00 0.00 30.81 3.85
1656 2421 2.104331 CCGACGATGTCCCGGAAG 59.896 66.667 0.73 0.00 45.58 3.46
1932 2786 1.071567 GCTTACTGAGGACGTCGTGC 61.072 60.000 16.63 9.08 0.00 5.34
2019 2873 9.601971 CAAAGGAAAAGAAATATTGCAAACATG 57.398 29.630 1.71 0.00 0.00 3.21
2020 2874 8.291740 GCAAAGGAAAAGAAATATTGCAAACAT 58.708 29.630 1.71 0.00 40.86 2.71
2067 2972 2.047179 GCCTCGCCGTCCTCTTTT 60.047 61.111 0.00 0.00 0.00 2.27
2213 3155 2.485814 AGCTTTCAGAATTCGGACTTGC 59.514 45.455 7.86 11.85 0.00 4.01
2435 3399 4.680110 ACAAATCTATAAACCGATCTCGCG 59.320 41.667 0.00 0.00 38.18 5.87
2445 3409 6.071616 TCCAAGGTGCCAACAAATCTATAAAC 60.072 38.462 0.00 0.00 0.00 2.01
2448 3412 5.186256 TCCAAGGTGCCAACAAATCTATA 57.814 39.130 0.00 0.00 0.00 1.31
2451 3415 2.380064 TCCAAGGTGCCAACAAATCT 57.620 45.000 0.00 0.00 0.00 2.40
2452 3416 3.328505 CAATCCAAGGTGCCAACAAATC 58.671 45.455 0.00 0.00 0.00 2.17
2453 3417 2.550639 GCAATCCAAGGTGCCAACAAAT 60.551 45.455 0.00 0.00 34.58 2.32
2454 3418 1.202627 GCAATCCAAGGTGCCAACAAA 60.203 47.619 0.00 0.00 34.58 2.83
2455 3419 0.392336 GCAATCCAAGGTGCCAACAA 59.608 50.000 0.00 0.00 34.58 2.83
2488 3459 0.751643 GCGACCACCCATTGCCTAAT 60.752 55.000 0.00 0.00 0.00 1.73
2775 3777 0.108472 CACGGCATGAAGAGAGCAGA 60.108 55.000 0.00 0.00 0.00 4.26
2776 3778 0.108472 TCACGGCATGAAGAGAGCAG 60.108 55.000 0.00 0.00 33.02 4.24
2783 3785 2.587956 CAACATTGTCACGGCATGAAG 58.412 47.619 0.00 0.00 39.72 3.02
2791 3793 2.414559 GGCATCTTCCAACATTGTCACG 60.415 50.000 0.00 0.00 0.00 4.35
2956 3978 3.834231 CCATCCTGAAATCCTTGTTGGTT 59.166 43.478 0.00 0.00 37.07 3.67
2959 3981 3.094572 AGCCATCCTGAAATCCTTGTTG 58.905 45.455 0.00 0.00 0.00 3.33
2962 3988 3.255149 GCATAGCCATCCTGAAATCCTTG 59.745 47.826 0.00 0.00 0.00 3.61
3042 4068 4.082354 GCCTAACCTACCACGATCGATAAT 60.082 45.833 24.34 6.64 0.00 1.28
3043 4069 3.254166 GCCTAACCTACCACGATCGATAA 59.746 47.826 24.34 3.09 0.00 1.75
3044 4070 2.816087 GCCTAACCTACCACGATCGATA 59.184 50.000 24.34 9.97 0.00 2.92
3106 4135 1.603739 GGTGTTGTTCCTCCCCTGC 60.604 63.158 0.00 0.00 0.00 4.85
3116 4145 2.481854 TGCGTATACGTTGGTGTTGTT 58.518 42.857 25.04 0.00 42.22 2.83
3119 4148 1.395608 GCATGCGTATACGTTGGTGTT 59.604 47.619 25.04 1.76 42.22 3.32
3121 4150 1.286501 AGCATGCGTATACGTTGGTG 58.713 50.000 25.04 18.16 42.22 4.17
3150 4182 3.944015 GCTGATCTGCACATCCTAGTTTT 59.056 43.478 18.67 0.00 0.00 2.43
3157 4189 0.818445 CCTGGCTGATCTGCACATCC 60.818 60.000 23.84 8.55 34.04 3.51
3195 4228 7.153478 CAACTGTGCTAGTCAATTTGAAAAC 57.847 36.000 0.00 0.00 39.18 2.43
3280 4316 9.387257 ACACTTTTATATTAGTTTACGAAGGGG 57.613 33.333 0.00 0.00 0.00 4.79
3330 4366 8.665685 CCTCTGTAAACAAATATAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
3331 4367 8.038944 TCCTCTGTAAACAAATATAAGAGCGTT 58.961 33.333 0.00 0.00 0.00 4.84
3332 4368 7.553334 TCCTCTGTAAACAAATATAAGAGCGT 58.447 34.615 0.00 0.00 0.00 5.07
3333 4369 8.420374 TTCCTCTGTAAACAAATATAAGAGCG 57.580 34.615 0.00 0.00 0.00 5.03
3334 4370 8.338986 GCTTCCTCTGTAAACAAATATAAGAGC 58.661 37.037 0.00 0.00 0.00 4.09
3335 4371 9.383519 TGCTTCCTCTGTAAACAAATATAAGAG 57.616 33.333 0.00 0.00 0.00 2.85
3336 4372 9.383519 CTGCTTCCTCTGTAAACAAATATAAGA 57.616 33.333 0.00 0.00 0.00 2.10
3337 4373 9.167311 ACTGCTTCCTCTGTAAACAAATATAAG 57.833 33.333 0.00 0.00 0.00 1.73
3338 4374 9.162764 GACTGCTTCCTCTGTAAACAAATATAA 57.837 33.333 0.00 0.00 0.00 0.98
3339 4375 7.491372 CGACTGCTTCCTCTGTAAACAAATATA 59.509 37.037 0.00 0.00 0.00 0.86
3340 4376 6.313905 CGACTGCTTCCTCTGTAAACAAATAT 59.686 38.462 0.00 0.00 0.00 1.28
3341 4377 5.637810 CGACTGCTTCCTCTGTAAACAAATA 59.362 40.000 0.00 0.00 0.00 1.40
3342 4378 4.452455 CGACTGCTTCCTCTGTAAACAAAT 59.548 41.667 0.00 0.00 0.00 2.32
3343 4379 3.807622 CGACTGCTTCCTCTGTAAACAAA 59.192 43.478 0.00 0.00 0.00 2.83
3344 4380 3.181469 ACGACTGCTTCCTCTGTAAACAA 60.181 43.478 0.00 0.00 0.00 2.83
3345 4381 2.364324 ACGACTGCTTCCTCTGTAAACA 59.636 45.455 0.00 0.00 0.00 2.83
3346 4382 3.027974 ACGACTGCTTCCTCTGTAAAC 57.972 47.619 0.00 0.00 0.00 2.01
3347 4383 3.570975 TGTACGACTGCTTCCTCTGTAAA 59.429 43.478 0.00 0.00 0.00 2.01
3348 4384 3.151554 TGTACGACTGCTTCCTCTGTAA 58.848 45.455 0.00 0.00 0.00 2.41
3349 4385 2.786777 TGTACGACTGCTTCCTCTGTA 58.213 47.619 0.00 0.00 0.00 2.74
3350 4386 1.617322 TGTACGACTGCTTCCTCTGT 58.383 50.000 0.00 0.00 0.00 3.41
3351 4387 2.949451 ATGTACGACTGCTTCCTCTG 57.051 50.000 0.00 0.00 0.00 3.35
3352 4388 4.737946 GCATTATGTACGACTGCTTCCTCT 60.738 45.833 0.00 0.00 0.00 3.69
3353 4389 3.491267 GCATTATGTACGACTGCTTCCTC 59.509 47.826 0.00 0.00 0.00 3.71
3354 4390 3.133003 AGCATTATGTACGACTGCTTCCT 59.867 43.478 6.61 0.00 40.08 3.36
3355 4391 3.458189 AGCATTATGTACGACTGCTTCC 58.542 45.455 6.61 0.00 40.08 3.46
3358 4394 5.063944 CAGAAAAGCATTATGTACGACTGCT 59.936 40.000 6.61 6.61 44.62 4.24
3359 4395 5.258622 CAGAAAAGCATTATGTACGACTGC 58.741 41.667 0.00 2.72 0.00 4.40
3360 4396 5.258622 GCAGAAAAGCATTATGTACGACTG 58.741 41.667 0.00 0.00 0.00 3.51
3361 4397 4.032900 CGCAGAAAAGCATTATGTACGACT 59.967 41.667 0.00 0.00 0.00 4.18
3362 4398 4.201685 ACGCAGAAAAGCATTATGTACGAC 60.202 41.667 0.00 0.00 0.00 4.34
3363 4399 3.930229 ACGCAGAAAAGCATTATGTACGA 59.070 39.130 0.00 0.00 0.00 3.43
3364 4400 4.258935 ACGCAGAAAAGCATTATGTACG 57.741 40.909 0.00 0.00 0.00 3.67
3365 4401 9.155053 GTAAATACGCAGAAAAGCATTATGTAC 57.845 33.333 0.00 0.00 0.00 2.90
3395 4431 9.638239 CTAAACACCATGTACTTTGCAATAAAT 57.362 29.630 0.00 0.00 0.00 1.40
3407 4443 5.001232 ACACCATGTCTAAACACCATGTAC 58.999 41.667 0.00 0.00 38.48 2.90
3412 4448 6.167685 GTGTATACACCATGTCTAAACACCA 58.832 40.000 23.03 0.00 40.85 4.17
3416 4452 5.290158 CCACGTGTATACACCATGTCTAAAC 59.710 44.000 26.37 1.58 43.66 2.01
3437 4473 4.251268 GGAGTAGTTTGGTATGTGTCCAC 58.749 47.826 0.00 0.00 34.45 4.02
3448 4484 1.134367 TCAGATCGCGGAGTAGTTTGG 59.866 52.381 6.13 0.00 0.00 3.28
3462 4498 4.979943 TGATCTAGCGGATGATCAGATC 57.020 45.455 11.49 11.49 42.58 2.75
3549 4585 6.238484 GCGCAATCCTATACTCTTTTTGTGAT 60.238 38.462 0.30 0.00 0.00 3.06
3553 4589 5.504665 CCAGCGCAATCCTATACTCTTTTTG 60.505 44.000 11.47 0.00 0.00 2.44
3561 4597 2.770164 ATCCCAGCGCAATCCTATAC 57.230 50.000 11.47 0.00 0.00 1.47
3577 4613 6.475402 CCAATTTTATACGCAACCAAGAATCC 59.525 38.462 0.00 0.00 0.00 3.01
3583 4619 3.368531 GGGCCAATTTTATACGCAACCAA 60.369 43.478 4.39 0.00 0.00 3.67
3584 4620 2.166664 GGGCCAATTTTATACGCAACCA 59.833 45.455 4.39 0.00 0.00 3.67
3585 4621 2.482316 GGGGCCAATTTTATACGCAACC 60.482 50.000 4.39 0.00 0.00 3.77
3586 4622 2.166664 TGGGGCCAATTTTATACGCAAC 59.833 45.455 4.39 0.00 0.00 4.17
3587 4623 2.457598 TGGGGCCAATTTTATACGCAA 58.542 42.857 4.39 0.00 0.00 4.85
3588 4624 2.145397 TGGGGCCAATTTTATACGCA 57.855 45.000 4.39 0.00 0.00 5.24
3589 4625 2.625790 TGATGGGGCCAATTTTATACGC 59.374 45.455 4.39 0.00 0.00 4.42
3590 4626 3.888930 AGTGATGGGGCCAATTTTATACG 59.111 43.478 4.39 0.00 0.00 3.06
3591 4627 5.869649 AAGTGATGGGGCCAATTTTATAC 57.130 39.130 4.39 0.00 0.00 1.47
3592 4628 6.436027 TGTAAGTGATGGGGCCAATTTTATA 58.564 36.000 4.39 0.00 0.00 0.98
3593 4629 5.276440 TGTAAGTGATGGGGCCAATTTTAT 58.724 37.500 4.39 0.00 0.00 1.40
3594 4630 4.678256 TGTAAGTGATGGGGCCAATTTTA 58.322 39.130 4.39 0.00 0.00 1.52
3595 4631 3.515562 TGTAAGTGATGGGGCCAATTTT 58.484 40.909 4.39 0.00 0.00 1.82
3596 4632 3.182887 TGTAAGTGATGGGGCCAATTT 57.817 42.857 4.39 0.00 0.00 1.82
3597 4633 2.917713 TGTAAGTGATGGGGCCAATT 57.082 45.000 4.39 0.00 0.00 2.32
3598 4634 2.917713 TTGTAAGTGATGGGGCCAAT 57.082 45.000 4.39 0.00 0.00 3.16
3633 4669 3.127376 GGGCGTAATGGTCGTTTATTTGT 59.873 43.478 0.00 0.00 0.00 2.83
3646 4682 1.453155 AAGTGCTGAAGGGCGTAATG 58.547 50.000 0.00 0.00 34.52 1.90
3649 4685 1.670674 CGTAAAGTGCTGAAGGGCGTA 60.671 52.381 0.00 0.00 34.52 4.42
3695 4731 1.665679 CACCAACATGAGCATCGGTAC 59.334 52.381 0.00 0.00 38.61 3.34
3755 4791 4.637483 TCTACAACGTAGGGATTTACCG 57.363 45.455 0.00 0.00 40.11 4.02
3794 4830 5.674820 GCAGGTGCTCTTTTGCTAGTTATTC 60.675 44.000 0.00 0.00 38.21 1.75
3815 4851 2.420628 TTTCTTCCGTTGCAATGCAG 57.579 45.000 13.42 10.84 40.61 4.41
3838 4875 7.518188 CCTATTTGATTAGGAGGTGTGGTATT 58.482 38.462 0.00 0.00 41.18 1.89
3848 4885 6.586344 TGAGTCTTGCCTATTTGATTAGGAG 58.414 40.000 1.71 0.00 41.18 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.