Multiple sequence alignment - TraesCS1A01G308800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G308800 chr1A 100.000 2396 0 0 1 2396 499786395 499784000 0.000000e+00 4425.0
1 TraesCS1A01G308800 chr1B 88.978 1370 37 36 547 1886 543498598 543497313 0.000000e+00 1589.0
2 TraesCS1A01G308800 chr1B 91.781 365 18 9 191 550 543499423 543499066 4.600000e-137 497.0
3 TraesCS1A01G308800 chr1B 91.538 260 17 4 1937 2192 543497210 543496952 1.050000e-93 353.0
4 TraesCS1A01G308800 chr1D 88.937 1157 39 34 773 1873 404138908 404137785 0.000000e+00 1345.0
5 TraesCS1A01G308800 chr1D 91.515 495 19 11 195 681 404139387 404138908 0.000000e+00 660.0
6 TraesCS1A01G308800 chr1D 95.726 117 4 1 2280 2396 404137550 404137435 1.130000e-43 187.0
7 TraesCS1A01G308800 chr1D 93.939 66 1 2 1964 2026 404137785 404137720 1.960000e-16 97.1
8 TraesCS1A01G308800 chr3D 92.348 379 29 0 1020 1398 441147394 441147772 7.540000e-150 540.0
9 TraesCS1A01G308800 chr3A 92.348 379 29 0 1020 1398 581274016 581274394 7.540000e-150 540.0
10 TraesCS1A01G308800 chr4B 91.247 377 33 0 1020 1396 390280735 390281111 4.570000e-142 514.0
11 TraesCS1A01G308800 chr3B 91.293 379 30 1 1020 1398 578401424 578401799 4.570000e-142 514.0
12 TraesCS1A01G308800 chr4D 90.451 377 36 0 1020 1396 312800700 312800324 4.600000e-137 497.0
13 TraesCS1A01G308800 chr4A 89.920 377 38 0 1020 1396 163818734 163819110 9.960000e-134 486.0
14 TraesCS1A01G308800 chr2D 88.624 378 43 0 1020 1397 49877341 49877718 6.030000e-126 460.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G308800 chr1A 499784000 499786395 2395 True 4425.000 4425 100.000000 1 2396 1 chr1A.!!$R1 2395
1 TraesCS1A01G308800 chr1B 543496952 543499423 2471 True 813.000 1589 90.765667 191 2192 3 chr1B.!!$R1 2001
2 TraesCS1A01G308800 chr1D 404137435 404139387 1952 True 572.275 1345 92.529250 195 2396 4 chr1D.!!$R1 2201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.243907 GCAGCAACGAGTGGACTAGA 59.756 55.0 0.0 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1905 2437 0.032815 GATCTCGAGCTAACCAGGCC 59.967 60.0 7.81 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.863965 TGAGAATCAGGTTGTTGTCATACA 58.136 37.500 0.00 0.00 42.56 2.29
24 25 5.700832 TGAGAATCAGGTTGTTGTCATACAC 59.299 40.000 0.00 0.00 42.56 2.90
25 26 5.869579 AGAATCAGGTTGTTGTCATACACT 58.130 37.500 0.00 0.00 0.00 3.55
26 27 5.702670 AGAATCAGGTTGTTGTCATACACTG 59.297 40.000 0.00 0.00 0.00 3.66
27 28 4.681074 TCAGGTTGTTGTCATACACTGA 57.319 40.909 0.00 0.00 32.16 3.41
28 29 5.227569 TCAGGTTGTTGTCATACACTGAT 57.772 39.130 0.00 0.00 35.97 2.90
29 30 4.996758 TCAGGTTGTTGTCATACACTGATG 59.003 41.667 0.00 0.00 35.97 3.07
30 31 4.756642 CAGGTTGTTGTCATACACTGATGT 59.243 41.667 0.00 0.00 43.30 3.06
31 32 5.931724 CAGGTTGTTGTCATACACTGATGTA 59.068 40.000 0.00 0.00 45.37 2.29
32 33 6.426633 CAGGTTGTTGTCATACACTGATGTAA 59.573 38.462 0.00 0.00 44.47 2.41
33 34 6.995686 AGGTTGTTGTCATACACTGATGTAAA 59.004 34.615 0.00 0.00 44.47 2.01
34 35 7.041372 AGGTTGTTGTCATACACTGATGTAAAC 60.041 37.037 0.00 0.00 44.47 2.01
35 36 7.041372 GGTTGTTGTCATACACTGATGTAAACT 60.041 37.037 0.00 0.00 44.47 2.66
36 37 8.342634 GTTGTTGTCATACACTGATGTAAACTT 58.657 33.333 0.00 0.00 44.47 2.66
37 38 9.549078 TTGTTGTCATACACTGATGTAAACTTA 57.451 29.630 0.00 0.00 44.47 2.24
38 39 9.719355 TGTTGTCATACACTGATGTAAACTTAT 57.281 29.630 0.00 0.00 44.47 1.73
44 45 9.197694 CATACACTGATGTAAACTTATCTAGGC 57.802 37.037 0.00 0.00 44.47 3.93
45 46 6.583562 ACACTGATGTAAACTTATCTAGGCC 58.416 40.000 0.00 0.00 37.26 5.19
46 47 6.156256 ACACTGATGTAAACTTATCTAGGCCA 59.844 38.462 5.01 0.00 37.26 5.36
47 48 7.047891 CACTGATGTAAACTTATCTAGGCCAA 58.952 38.462 5.01 0.00 0.00 4.52
48 49 7.716998 CACTGATGTAAACTTATCTAGGCCAAT 59.283 37.037 5.01 0.00 0.00 3.16
49 50 7.716998 ACTGATGTAAACTTATCTAGGCCAATG 59.283 37.037 5.01 0.00 0.00 2.82
50 51 7.801104 TGATGTAAACTTATCTAGGCCAATGA 58.199 34.615 5.01 0.00 0.00 2.57
51 52 7.933577 TGATGTAAACTTATCTAGGCCAATGAG 59.066 37.037 5.01 4.25 0.00 2.90
52 53 6.055588 TGTAAACTTATCTAGGCCAATGAGC 58.944 40.000 5.01 0.00 0.00 4.26
53 54 4.778213 AACTTATCTAGGCCAATGAGCA 57.222 40.909 5.01 0.00 0.00 4.26
54 55 4.989875 ACTTATCTAGGCCAATGAGCAT 57.010 40.909 5.01 0.00 0.00 3.79
55 56 4.904241 ACTTATCTAGGCCAATGAGCATC 58.096 43.478 5.01 0.00 0.00 3.91
56 57 4.596643 ACTTATCTAGGCCAATGAGCATCT 59.403 41.667 5.01 0.00 34.92 2.90
57 58 2.924757 TCTAGGCCAATGAGCATCTG 57.075 50.000 5.01 0.00 34.92 2.90
58 59 2.121948 TCTAGGCCAATGAGCATCTGT 58.878 47.619 5.01 0.00 34.92 3.41
59 60 2.507058 TCTAGGCCAATGAGCATCTGTT 59.493 45.455 5.01 0.00 34.92 3.16
60 61 2.226962 AGGCCAATGAGCATCTGTTT 57.773 45.000 5.01 0.00 34.92 2.83
61 62 2.532843 AGGCCAATGAGCATCTGTTTT 58.467 42.857 5.01 0.00 34.92 2.43
62 63 2.232941 AGGCCAATGAGCATCTGTTTTG 59.767 45.455 5.01 0.00 34.92 2.44
63 64 2.028748 GGCCAATGAGCATCTGTTTTGT 60.029 45.455 0.00 0.00 34.92 2.83
64 65 3.555586 GGCCAATGAGCATCTGTTTTGTT 60.556 43.478 0.00 0.00 34.92 2.83
65 66 4.321899 GGCCAATGAGCATCTGTTTTGTTA 60.322 41.667 0.00 0.00 34.92 2.41
66 67 4.622740 GCCAATGAGCATCTGTTTTGTTAC 59.377 41.667 0.00 0.00 34.92 2.50
67 68 5.771469 CCAATGAGCATCTGTTTTGTTACA 58.229 37.500 0.00 0.00 34.92 2.41
68 69 6.215121 CCAATGAGCATCTGTTTTGTTACAA 58.785 36.000 0.00 0.00 34.92 2.41
69 70 6.869913 CCAATGAGCATCTGTTTTGTTACAAT 59.130 34.615 0.00 0.00 34.92 2.71
70 71 7.385752 CCAATGAGCATCTGTTTTGTTACAATT 59.614 33.333 0.00 0.00 34.92 2.32
71 72 9.409312 CAATGAGCATCTGTTTTGTTACAATTA 57.591 29.630 0.00 0.00 34.92 1.40
77 78 9.840427 GCATCTGTTTTGTTACAATTATAGTGT 57.160 29.630 0.00 0.00 0.00 3.55
80 81 9.562408 TCTGTTTTGTTACAATTATAGTGTGGA 57.438 29.630 0.00 0.00 0.00 4.02
82 83 9.953697 TGTTTTGTTACAATTATAGTGTGGAAC 57.046 29.630 0.00 0.00 37.35 3.62
83 84 9.109533 GTTTTGTTACAATTATAGTGTGGAACG 57.890 33.333 0.00 0.00 42.39 3.95
93 94 2.551270 GTGGAACGCAGCAACGAG 59.449 61.111 5.33 0.00 39.55 4.18
94 95 2.108157 TGGAACGCAGCAACGAGT 59.892 55.556 5.33 0.00 36.70 4.18
95 96 2.243957 TGGAACGCAGCAACGAGTG 61.244 57.895 5.33 0.00 36.70 3.51
96 97 2.551270 GAACGCAGCAACGAGTGG 59.449 61.111 5.33 0.00 36.70 4.00
97 98 1.954146 GAACGCAGCAACGAGTGGA 60.954 57.895 5.33 0.00 36.70 4.02
98 99 2.159272 GAACGCAGCAACGAGTGGAC 62.159 60.000 5.33 0.00 36.70 4.02
99 100 2.356313 CGCAGCAACGAGTGGACT 60.356 61.111 0.00 0.00 34.06 3.85
100 101 1.080772 CGCAGCAACGAGTGGACTA 60.081 57.895 0.00 0.00 34.06 2.59
101 102 1.073216 CGCAGCAACGAGTGGACTAG 61.073 60.000 0.00 0.00 34.06 2.57
102 103 0.243907 GCAGCAACGAGTGGACTAGA 59.756 55.000 0.00 0.00 0.00 2.43
103 104 1.134965 GCAGCAACGAGTGGACTAGAT 60.135 52.381 0.00 0.00 0.00 1.98
104 105 2.534298 CAGCAACGAGTGGACTAGATG 58.466 52.381 0.00 0.00 0.00 2.90
105 106 1.478510 AGCAACGAGTGGACTAGATGG 59.521 52.381 0.00 0.00 0.00 3.51
106 107 1.204941 GCAACGAGTGGACTAGATGGT 59.795 52.381 0.00 0.00 0.00 3.55
107 108 2.881074 CAACGAGTGGACTAGATGGTG 58.119 52.381 0.00 0.00 0.00 4.17
108 109 2.492088 CAACGAGTGGACTAGATGGTGA 59.508 50.000 0.00 0.00 0.00 4.02
109 110 2.803956 ACGAGTGGACTAGATGGTGAA 58.196 47.619 0.00 0.00 0.00 3.18
110 111 3.366396 ACGAGTGGACTAGATGGTGAAT 58.634 45.455 0.00 0.00 0.00 2.57
111 112 3.769844 ACGAGTGGACTAGATGGTGAATT 59.230 43.478 0.00 0.00 0.00 2.17
112 113 4.115516 CGAGTGGACTAGATGGTGAATTG 58.884 47.826 0.00 0.00 0.00 2.32
113 114 4.446371 GAGTGGACTAGATGGTGAATTGG 58.554 47.826 0.00 0.00 0.00 3.16
114 115 4.104086 AGTGGACTAGATGGTGAATTGGA 58.896 43.478 0.00 0.00 0.00 3.53
115 116 4.163078 AGTGGACTAGATGGTGAATTGGAG 59.837 45.833 0.00 0.00 0.00 3.86
116 117 4.080863 GTGGACTAGATGGTGAATTGGAGT 60.081 45.833 0.00 0.00 0.00 3.85
117 118 5.128827 GTGGACTAGATGGTGAATTGGAGTA 59.871 44.000 0.00 0.00 0.00 2.59
118 119 5.128827 TGGACTAGATGGTGAATTGGAGTAC 59.871 44.000 0.00 0.00 0.00 2.73
119 120 5.453480 GGACTAGATGGTGAATTGGAGTACC 60.453 48.000 0.00 0.00 0.00 3.34
120 121 3.543680 AGATGGTGAATTGGAGTACCG 57.456 47.619 0.00 0.00 39.42 4.02
121 122 2.838202 AGATGGTGAATTGGAGTACCGT 59.162 45.455 0.00 0.00 39.42 4.83
122 123 4.028131 AGATGGTGAATTGGAGTACCGTA 58.972 43.478 0.00 0.00 39.42 4.02
123 124 3.880047 TGGTGAATTGGAGTACCGTAG 57.120 47.619 0.00 0.00 39.42 3.51
124 125 3.167485 TGGTGAATTGGAGTACCGTAGT 58.833 45.455 0.00 0.00 39.42 2.73
125 126 4.343231 TGGTGAATTGGAGTACCGTAGTA 58.657 43.478 0.00 0.00 39.42 1.82
126 127 4.400251 TGGTGAATTGGAGTACCGTAGTAG 59.600 45.833 0.00 0.00 39.42 2.57
127 128 4.641989 GGTGAATTGGAGTACCGTAGTAGA 59.358 45.833 0.00 0.00 39.42 2.59
128 129 5.301298 GGTGAATTGGAGTACCGTAGTAGAT 59.699 44.000 0.00 0.00 39.42 1.98
129 130 6.207213 GTGAATTGGAGTACCGTAGTAGATG 58.793 44.000 0.00 0.00 39.42 2.90
130 131 6.039047 GTGAATTGGAGTACCGTAGTAGATGA 59.961 42.308 0.00 0.00 39.42 2.92
131 132 6.776116 TGAATTGGAGTACCGTAGTAGATGAT 59.224 38.462 0.00 0.00 39.42 2.45
132 133 6.576662 ATTGGAGTACCGTAGTAGATGATG 57.423 41.667 0.00 0.00 39.42 3.07
133 134 3.819337 TGGAGTACCGTAGTAGATGATGC 59.181 47.826 0.00 0.00 39.42 3.91
134 135 3.190953 GGAGTACCGTAGTAGATGATGCC 59.809 52.174 0.00 0.00 0.00 4.40
135 136 3.819337 GAGTACCGTAGTAGATGATGCCA 59.181 47.826 0.00 0.00 0.00 4.92
136 137 4.212716 AGTACCGTAGTAGATGATGCCAA 58.787 43.478 0.00 0.00 0.00 4.52
137 138 3.735237 ACCGTAGTAGATGATGCCAAG 57.265 47.619 0.00 0.00 0.00 3.61
138 139 2.365617 ACCGTAGTAGATGATGCCAAGG 59.634 50.000 0.00 0.00 0.00 3.61
139 140 2.628178 CCGTAGTAGATGATGCCAAGGA 59.372 50.000 0.00 0.00 0.00 3.36
140 141 3.259374 CCGTAGTAGATGATGCCAAGGAT 59.741 47.826 0.00 0.00 0.00 3.24
141 142 4.262635 CCGTAGTAGATGATGCCAAGGATT 60.263 45.833 0.00 0.00 0.00 3.01
142 143 5.300752 CGTAGTAGATGATGCCAAGGATTT 58.699 41.667 0.00 0.00 0.00 2.17
143 144 6.455647 CGTAGTAGATGATGCCAAGGATTTA 58.544 40.000 0.00 0.00 0.00 1.40
144 145 6.587990 CGTAGTAGATGATGCCAAGGATTTAG 59.412 42.308 0.00 0.00 0.00 1.85
145 146 6.506538 AGTAGATGATGCCAAGGATTTAGT 57.493 37.500 0.00 0.00 0.00 2.24
146 147 6.529220 AGTAGATGATGCCAAGGATTTAGTC 58.471 40.000 0.00 0.00 0.00 2.59
147 148 5.378230 AGATGATGCCAAGGATTTAGTCA 57.622 39.130 0.00 0.00 0.00 3.41
148 149 5.374921 AGATGATGCCAAGGATTTAGTCAG 58.625 41.667 0.00 0.00 0.00 3.51
149 150 3.889815 TGATGCCAAGGATTTAGTCAGG 58.110 45.455 0.00 0.00 0.00 3.86
150 151 3.523157 TGATGCCAAGGATTTAGTCAGGA 59.477 43.478 0.00 0.00 0.00 3.86
151 152 4.166725 TGATGCCAAGGATTTAGTCAGGAT 59.833 41.667 0.00 0.00 0.00 3.24
152 153 4.591321 TGCCAAGGATTTAGTCAGGATT 57.409 40.909 0.00 0.00 0.00 3.01
153 154 4.934356 TGCCAAGGATTTAGTCAGGATTT 58.066 39.130 0.00 0.00 0.00 2.17
154 155 4.949856 TGCCAAGGATTTAGTCAGGATTTC 59.050 41.667 0.00 0.00 0.00 2.17
155 156 5.196695 GCCAAGGATTTAGTCAGGATTTCT 58.803 41.667 0.00 0.00 0.00 2.52
156 157 5.298026 GCCAAGGATTTAGTCAGGATTTCTC 59.702 44.000 0.00 0.00 0.00 2.87
157 158 6.418101 CCAAGGATTTAGTCAGGATTTCTCA 58.582 40.000 0.00 0.00 0.00 3.27
158 159 7.059156 CCAAGGATTTAGTCAGGATTTCTCAT 58.941 38.462 0.00 0.00 0.00 2.90
159 160 7.228308 CCAAGGATTTAGTCAGGATTTCTCATC 59.772 40.741 0.00 0.00 0.00 2.92
160 161 6.836242 AGGATTTAGTCAGGATTTCTCATCC 58.164 40.000 0.00 0.00 38.47 3.51
169 170 5.707066 AGGATTTCTCATCCTGTTTAGCT 57.293 39.130 2.42 0.00 46.18 3.32
170 171 5.679601 AGGATTTCTCATCCTGTTTAGCTC 58.320 41.667 2.42 0.00 46.18 4.09
171 172 5.428131 AGGATTTCTCATCCTGTTTAGCTCT 59.572 40.000 2.42 0.00 46.18 4.09
172 173 5.757808 GGATTTCTCATCCTGTTTAGCTCTC 59.242 44.000 0.00 0.00 35.36 3.20
173 174 4.744795 TTCTCATCCTGTTTAGCTCTCC 57.255 45.455 0.00 0.00 0.00 3.71
174 175 3.987745 TCTCATCCTGTTTAGCTCTCCT 58.012 45.455 0.00 0.00 0.00 3.69
175 176 4.357325 TCTCATCCTGTTTAGCTCTCCTT 58.643 43.478 0.00 0.00 0.00 3.36
176 177 4.780021 TCTCATCCTGTTTAGCTCTCCTTT 59.220 41.667 0.00 0.00 0.00 3.11
177 178 5.249393 TCTCATCCTGTTTAGCTCTCCTTTT 59.751 40.000 0.00 0.00 0.00 2.27
178 179 6.440647 TCTCATCCTGTTTAGCTCTCCTTTTA 59.559 38.462 0.00 0.00 0.00 1.52
179 180 7.126421 TCTCATCCTGTTTAGCTCTCCTTTTAT 59.874 37.037 0.00 0.00 0.00 1.40
180 181 8.319057 TCATCCTGTTTAGCTCTCCTTTTATA 57.681 34.615 0.00 0.00 0.00 0.98
181 182 8.768397 TCATCCTGTTTAGCTCTCCTTTTATAA 58.232 33.333 0.00 0.00 0.00 0.98
182 183 8.831550 CATCCTGTTTAGCTCTCCTTTTATAAC 58.168 37.037 0.00 0.00 0.00 1.89
183 184 7.039882 TCCTGTTTAGCTCTCCTTTTATAACG 58.960 38.462 0.00 0.00 0.00 3.18
184 185 6.238130 CCTGTTTAGCTCTCCTTTTATAACGC 60.238 42.308 0.00 0.00 0.00 4.84
185 186 5.290158 TGTTTAGCTCTCCTTTTATAACGCG 59.710 40.000 3.53 3.53 0.00 6.01
186 187 3.795623 AGCTCTCCTTTTATAACGCGA 57.204 42.857 15.93 0.00 0.00 5.87
187 188 3.445857 AGCTCTCCTTTTATAACGCGAC 58.554 45.455 15.93 0.00 0.00 5.19
188 189 3.119245 AGCTCTCCTTTTATAACGCGACA 60.119 43.478 15.93 0.00 0.00 4.35
189 190 3.000022 GCTCTCCTTTTATAACGCGACAC 60.000 47.826 15.93 0.00 0.00 3.67
190 191 4.421948 CTCTCCTTTTATAACGCGACACT 58.578 43.478 15.93 0.00 0.00 3.55
191 192 4.171005 TCTCCTTTTATAACGCGACACTG 58.829 43.478 15.93 0.00 0.00 3.66
192 193 4.082625 TCTCCTTTTATAACGCGACACTGA 60.083 41.667 15.93 0.00 0.00 3.41
193 194 4.558178 TCCTTTTATAACGCGACACTGAA 58.442 39.130 15.93 0.00 0.00 3.02
214 215 6.049149 TGAAGAGACTTTTTGGTGACAGTAG 58.951 40.000 0.00 0.00 44.54 2.57
234 235 2.144730 GCAGCATGATCTAGCTTCTGG 58.855 52.381 9.34 1.47 39.50 3.86
241 245 2.961741 TGATCTAGCTTCTGGTAGCCTG 59.038 50.000 0.00 0.00 42.28 4.85
319 323 8.958506 GTAGATTCCTCTTTTCTAGTAGTGTCA 58.041 37.037 0.00 0.00 32.66 3.58
342 346 8.512956 GTCATAGCTCATTTCTGCATCATTTAT 58.487 33.333 0.00 0.00 0.00 1.40
359 365 9.590451 CATCATTTATGTTATTTCCTTGCTTGT 57.410 29.630 0.00 0.00 0.00 3.16
360 366 8.984891 TCATTTATGTTATTTCCTTGCTTGTG 57.015 30.769 0.00 0.00 0.00 3.33
361 367 7.545265 TCATTTATGTTATTTCCTTGCTTGTGC 59.455 33.333 0.00 0.00 40.20 4.57
368 374 3.921119 TTCCTTGCTTGTGCTACATTG 57.079 42.857 0.00 0.00 40.48 2.82
389 395 2.386661 AGGACTATGTTTCAGCACGG 57.613 50.000 0.00 0.00 0.00 4.94
410 416 4.261801 GGCTTTAGATGCAAGTTGGTCTA 58.738 43.478 4.75 0.00 0.00 2.59
440 446 9.750125 TGTGATCTGTGTCATATCTAATTGTAC 57.250 33.333 0.00 0.00 0.00 2.90
463 469 9.366216 GTACACATGATGACTTGTAGAATTGTA 57.634 33.333 0.00 0.00 33.96 2.41
514 520 4.402829 TGGGCAGCAAGAACTACATTTTA 58.597 39.130 0.00 0.00 0.00 1.52
660 1135 5.082059 CAGTATGTTGAAATGAACGTCAGC 58.918 41.667 0.00 0.00 0.00 4.26
667 1142 2.717580 AATGAACGTCAGCGACACTA 57.282 45.000 8.91 0.00 42.00 2.74
712 1187 9.628500 GTTAACCTATCTTATTGTTCCCTTCAT 57.372 33.333 0.00 0.00 0.00 2.57
743 1218 5.236478 CAGCCGGCCTATAATATTTAATCCG 59.764 44.000 26.15 1.49 0.00 4.18
760 1235 1.828595 TCCGTACTGCTTATCCTGCAA 59.171 47.619 0.00 0.00 40.13 4.08
767 1242 4.194640 ACTGCTTATCCTGCAATACAGTG 58.805 43.478 0.00 0.00 45.68 3.66
1015 1507 6.624423 AGATAACGAATGCTTGCTGAATTTT 58.376 32.000 0.00 0.00 0.00 1.82
1016 1508 4.977741 AACGAATGCTTGCTGAATTTTG 57.022 36.364 0.00 0.00 0.00 2.44
1044 1536 0.610232 GCATCACCACCAAGGAGCTT 60.610 55.000 0.00 0.00 41.22 3.74
1445 1937 6.972901 CCTCCCACGAAATAAGCTTAAAATTC 59.027 38.462 10.85 13.55 0.00 2.17
1446 1938 7.362574 CCTCCCACGAAATAAGCTTAAAATTCA 60.363 37.037 10.85 0.00 0.00 2.57
1447 1939 7.887381 TCCCACGAAATAAGCTTAAAATTCAA 58.113 30.769 10.85 0.00 0.00 2.69
1448 1940 8.026607 TCCCACGAAATAAGCTTAAAATTCAAG 58.973 33.333 10.85 9.86 0.00 3.02
1453 1956 9.573133 CGAAATAAGCTTAAAATTCAAGTGGAT 57.427 29.630 10.85 0.00 0.00 3.41
1475 1978 1.416813 GAATGCCAGACAGACTCGCG 61.417 60.000 0.00 0.00 35.55 5.87
1476 1979 2.159819 AATGCCAGACAGACTCGCGT 62.160 55.000 5.77 0.00 35.55 6.01
1542 2052 3.299503 GGGTAGTTGGTCGGGTTATCTA 58.700 50.000 0.00 0.00 0.00 1.98
1543 2053 3.899980 GGGTAGTTGGTCGGGTTATCTAT 59.100 47.826 0.00 0.00 0.00 1.98
1544 2054 4.021632 GGGTAGTTGGTCGGGTTATCTATC 60.022 50.000 0.00 0.00 0.00 2.08
1545 2055 4.831710 GGTAGTTGGTCGGGTTATCTATCT 59.168 45.833 0.00 0.00 0.00 1.98
1561 2071 4.778579 TCTATCTTGTAGCGGTGTAGTCT 58.221 43.478 0.00 0.00 0.00 3.24
1563 2073 3.570926 TCTTGTAGCGGTGTAGTCTTG 57.429 47.619 0.00 0.00 0.00 3.02
1582 2092 1.152881 GGGGAGCAGCATCGGAATT 60.153 57.895 0.00 0.00 0.00 2.17
1583 2093 0.108585 GGGGAGCAGCATCGGAATTA 59.891 55.000 0.00 0.00 0.00 1.40
1584 2094 1.230324 GGGAGCAGCATCGGAATTAC 58.770 55.000 0.00 0.00 0.00 1.89
1645 2165 4.455877 GTCTTATCATGGAATTTAGGGGCG 59.544 45.833 0.00 0.00 0.00 6.13
1700 2220 2.791158 CGTGTCTGCTTGGTTTGTGTTC 60.791 50.000 0.00 0.00 0.00 3.18
1701 2221 2.163412 GTGTCTGCTTGGTTTGTGTTCA 59.837 45.455 0.00 0.00 0.00 3.18
1755 2276 1.642112 TTCCATTTGGCATGCTTGGA 58.358 45.000 18.92 19.98 34.74 3.53
1756 2277 0.896923 TCCATTTGGCATGCTTGGAC 59.103 50.000 18.92 0.10 31.67 4.02
1757 2278 0.108041 CCATTTGGCATGCTTGGACC 60.108 55.000 18.92 0.00 0.00 4.46
1760 2281 0.968405 TTTGGCATGCTTGGACCTTC 59.032 50.000 18.92 0.00 0.00 3.46
1761 2282 0.112995 TTGGCATGCTTGGACCTTCT 59.887 50.000 18.92 0.00 0.00 2.85
1763 2284 1.318158 GGCATGCTTGGACCTTCTGG 61.318 60.000 18.92 0.00 39.83 3.86
1777 2307 2.353803 CCTTCTGGAACTTCGGTGGTAG 60.354 54.545 0.00 0.00 34.57 3.18
1778 2308 0.606604 TCTGGAACTTCGGTGGTAGC 59.393 55.000 0.00 0.00 0.00 3.58
1779 2309 0.608640 CTGGAACTTCGGTGGTAGCT 59.391 55.000 0.00 0.00 0.00 3.32
1785 2315 1.623811 ACTTCGGTGGTAGCTGTGATT 59.376 47.619 0.00 0.00 0.00 2.57
1809 2339 0.598158 AACTGCGCTGGTGCAAATTG 60.598 50.000 18.98 1.56 45.74 2.32
1810 2340 1.007038 CTGCGCTGGTGCAAATTGT 60.007 52.632 9.73 0.00 45.74 2.71
1812 2342 1.286880 GCGCTGGTGCAAATTGTCT 59.713 52.632 0.00 0.00 39.64 3.41
1833 2365 1.134226 GTACAGTTGTTGGACGACGG 58.866 55.000 0.00 0.00 37.57 4.79
1855 2387 1.409064 ACAGAACTCAAGTCGACAGCA 59.591 47.619 19.50 0.00 0.00 4.41
1858 2390 3.309682 CAGAACTCAAGTCGACAGCAAAA 59.690 43.478 19.50 0.00 0.00 2.44
1873 2405 1.941975 GCAAAACCAACAGCTGCATTT 59.058 42.857 15.27 6.45 33.19 2.32
1886 2418 4.009675 AGCTGCATTTGTCGGAATCTAAA 58.990 39.130 1.02 0.00 0.00 1.85
1887 2419 4.098416 GCTGCATTTGTCGGAATCTAAAC 58.902 43.478 0.00 0.00 0.00 2.01
1888 2420 4.379394 GCTGCATTTGTCGGAATCTAAACA 60.379 41.667 0.00 0.00 0.00 2.83
1889 2421 5.295431 TGCATTTGTCGGAATCTAAACAG 57.705 39.130 0.00 0.00 0.00 3.16
1890 2422 4.155826 TGCATTTGTCGGAATCTAAACAGG 59.844 41.667 0.00 0.00 0.00 4.00
1892 2424 4.627284 TTTGTCGGAATCTAAACAGGGA 57.373 40.909 0.00 0.00 0.00 4.20
1894 2426 4.402056 TGTCGGAATCTAAACAGGGATC 57.598 45.455 0.00 0.00 0.00 3.36
1896 2428 3.134081 GTCGGAATCTAAACAGGGATCCA 59.866 47.826 15.23 0.00 0.00 3.41
1897 2429 3.973973 TCGGAATCTAAACAGGGATCCAT 59.026 43.478 15.23 2.55 0.00 3.41
1899 2431 5.785423 TCGGAATCTAAACAGGGATCCATAT 59.215 40.000 15.23 0.00 0.00 1.78
1900 2432 5.877012 CGGAATCTAAACAGGGATCCATATG 59.123 44.000 15.23 11.46 0.00 1.78
1901 2433 6.295859 CGGAATCTAAACAGGGATCCATATGA 60.296 42.308 15.23 2.47 0.00 2.15
1903 2435 7.555554 GGAATCTAAACAGGGATCCATATGATG 59.444 40.741 15.23 4.58 32.41 3.07
1913 2445 0.484212 CCATATGATGGGGCCTGGTT 59.516 55.000 3.65 0.00 46.86 3.67
1914 2446 1.710244 CCATATGATGGGGCCTGGTTA 59.290 52.381 3.65 0.00 46.86 2.85
1915 2447 2.291153 CCATATGATGGGGCCTGGTTAG 60.291 54.545 3.65 0.00 46.86 2.34
1919 2451 2.666596 GATGGGGCCTGGTTAGCTCG 62.667 65.000 0.84 0.00 0.00 5.03
1920 2452 3.081409 GGGGCCTGGTTAGCTCGA 61.081 66.667 0.84 0.00 0.00 4.04
1921 2453 2.501610 GGGCCTGGTTAGCTCGAG 59.498 66.667 8.45 8.45 0.00 4.04
1922 2454 2.058595 GGGCCTGGTTAGCTCGAGA 61.059 63.158 18.75 0.00 0.00 4.04
1923 2455 1.403687 GGGCCTGGTTAGCTCGAGAT 61.404 60.000 18.75 13.81 0.00 2.75
1924 2456 0.032815 GGCCTGGTTAGCTCGAGATC 59.967 60.000 18.75 0.00 0.00 2.75
1925 2457 0.032815 GCCTGGTTAGCTCGAGATCC 59.967 60.000 18.75 9.24 0.00 3.36
1926 2458 1.403814 CCTGGTTAGCTCGAGATCCA 58.596 55.000 18.75 13.84 0.00 3.41
1927 2459 1.339610 CCTGGTTAGCTCGAGATCCAG 59.660 57.143 24.41 24.41 41.17 3.86
1930 2462 1.000717 GGTTAGCTCGAGATCCAGCTC 60.001 57.143 18.75 0.00 42.60 4.09
1931 2463 1.000717 GTTAGCTCGAGATCCAGCTCC 60.001 57.143 18.75 0.00 42.60 4.70
1932 2464 0.476338 TAGCTCGAGATCCAGCTCCT 59.524 55.000 18.75 2.44 42.60 3.69
1959 2543 0.030908 CGATTCCCCGCTGTACTCTC 59.969 60.000 0.00 0.00 0.00 3.20
1963 2547 1.682684 CCCCGCTGTACTCTCTGGT 60.683 63.158 0.00 0.00 0.00 4.00
1964 2548 1.513158 CCCGCTGTACTCTCTGGTG 59.487 63.158 0.00 0.00 0.00 4.17
1965 2549 1.251527 CCCGCTGTACTCTCTGGTGT 61.252 60.000 0.00 0.00 0.00 4.16
2034 2620 2.546321 CACGTCGCTCTTGTGTGC 59.454 61.111 0.00 0.00 0.00 4.57
2055 2641 4.049546 CCAACAATATGGCATGGAAGTG 57.950 45.455 10.98 2.18 32.78 3.16
2061 2647 5.536161 ACAATATGGCATGGAAGTGGTAATC 59.464 40.000 10.98 0.00 0.00 1.75
2091 2678 5.202765 TGCTATGATGATCAATTGTTGGGT 58.797 37.500 5.13 0.00 0.00 4.51
2096 2683 9.506018 CTATGATGATCAATTGTTGGGTACATA 57.494 33.333 5.13 7.53 36.44 2.29
2098 2685 7.345691 TGATGATCAATTGTTGGGTACATAGT 58.654 34.615 5.13 0.00 36.44 2.12
2126 2713 1.324736 CGCCAGCTCGTTGAACTATTC 59.675 52.381 0.00 0.00 0.00 1.75
2127 2717 1.666189 GCCAGCTCGTTGAACTATTCC 59.334 52.381 0.00 0.00 0.00 3.01
2238 2828 7.671495 AAAACATCTTCACCATAAAAATGCC 57.329 32.000 0.00 0.00 0.00 4.40
2244 2834 8.732531 CATCTTCACCATAAAAATGCCAAAATT 58.267 29.630 0.00 0.00 0.00 1.82
2258 2848 4.326504 CCAAAATTGGCAGAGTTCAACT 57.673 40.909 0.00 0.00 42.21 3.16
2259 2849 4.696455 CCAAAATTGGCAGAGTTCAACTT 58.304 39.130 0.00 0.00 42.21 2.66
2260 2850 4.508861 CCAAAATTGGCAGAGTTCAACTTG 59.491 41.667 0.00 0.00 42.21 3.16
2261 2851 4.326504 AAATTGGCAGAGTTCAACTTGG 57.673 40.909 0.00 0.00 0.00 3.61
2262 2852 2.435372 TTGGCAGAGTTCAACTTGGT 57.565 45.000 0.00 0.00 0.00 3.67
2263 2853 1.679139 TGGCAGAGTTCAACTTGGTG 58.321 50.000 0.00 0.00 0.00 4.17
2264 2854 1.064758 TGGCAGAGTTCAACTTGGTGT 60.065 47.619 0.00 0.00 0.00 4.16
2265 2855 1.604278 GGCAGAGTTCAACTTGGTGTC 59.396 52.381 0.00 0.00 0.00 3.67
2266 2856 2.288666 GCAGAGTTCAACTTGGTGTCA 58.711 47.619 0.00 0.00 0.00 3.58
2267 2857 2.880890 GCAGAGTTCAACTTGGTGTCAT 59.119 45.455 0.00 0.00 0.00 3.06
2268 2858 3.058639 GCAGAGTTCAACTTGGTGTCATC 60.059 47.826 0.00 0.00 0.00 2.92
2269 2859 4.384056 CAGAGTTCAACTTGGTGTCATCT 58.616 43.478 0.00 0.00 0.00 2.90
2270 2860 4.212847 CAGAGTTCAACTTGGTGTCATCTG 59.787 45.833 0.00 0.00 0.00 2.90
2271 2861 4.130118 GAGTTCAACTTGGTGTCATCTGT 58.870 43.478 0.00 0.00 0.00 3.41
2272 2862 4.130118 AGTTCAACTTGGTGTCATCTGTC 58.870 43.478 0.00 0.00 0.00 3.51
2273 2863 3.836365 TCAACTTGGTGTCATCTGTCA 57.164 42.857 0.00 0.00 0.00 3.58
2274 2864 4.356405 TCAACTTGGTGTCATCTGTCAT 57.644 40.909 0.00 0.00 0.00 3.06
2275 2865 4.067192 TCAACTTGGTGTCATCTGTCATG 58.933 43.478 0.00 0.00 0.00 3.07
2276 2866 3.777106 ACTTGGTGTCATCTGTCATGT 57.223 42.857 0.00 0.00 0.00 3.21
2277 2867 3.405831 ACTTGGTGTCATCTGTCATGTG 58.594 45.455 0.00 0.00 0.00 3.21
2278 2868 1.812235 TGGTGTCATCTGTCATGTGC 58.188 50.000 0.00 0.00 0.00 4.57
2328 2918 4.762251 AGAGGGAAAGTTGTCATTGCTTAC 59.238 41.667 0.00 0.00 0.00 2.34
2339 2929 5.105063 TGTCATTGCTTACGATCTCTCTTG 58.895 41.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.700832 TCAGTGTATGACAACAACCTGATTC 59.299 40.000 0.00 0.00 31.32 2.52
5 6 5.227569 TCAGTGTATGACAACAACCTGAT 57.772 39.130 0.00 0.00 31.32 2.90
6 7 4.681074 TCAGTGTATGACAACAACCTGA 57.319 40.909 0.00 0.00 32.89 3.86
7 8 4.756642 ACATCAGTGTATGACAACAACCTG 59.243 41.667 8.85 0.00 41.91 4.00
8 9 4.973168 ACATCAGTGTATGACAACAACCT 58.027 39.130 8.85 0.00 41.91 3.50
9 10 6.795098 TTACATCAGTGTATGACAACAACC 57.205 37.500 8.85 0.00 41.91 3.77
10 11 7.861630 AGTTTACATCAGTGTATGACAACAAC 58.138 34.615 8.85 0.00 41.91 3.32
11 12 8.445275 AAGTTTACATCAGTGTATGACAACAA 57.555 30.769 8.85 0.00 41.91 2.83
12 13 9.719355 ATAAGTTTACATCAGTGTATGACAACA 57.281 29.630 8.85 0.00 41.91 3.33
18 19 9.197694 GCCTAGATAAGTTTACATCAGTGTATG 57.802 37.037 0.00 0.00 40.35 2.39
19 20 8.368668 GGCCTAGATAAGTTTACATCAGTGTAT 58.631 37.037 0.00 0.00 40.35 2.29
20 21 7.343574 TGGCCTAGATAAGTTTACATCAGTGTA 59.656 37.037 3.32 0.00 39.77 2.90
21 22 6.156256 TGGCCTAGATAAGTTTACATCAGTGT 59.844 38.462 3.32 0.00 42.39 3.55
22 23 6.582636 TGGCCTAGATAAGTTTACATCAGTG 58.417 40.000 3.32 0.00 0.00 3.66
23 24 6.808321 TGGCCTAGATAAGTTTACATCAGT 57.192 37.500 3.32 0.00 0.00 3.41
24 25 7.933577 TCATTGGCCTAGATAAGTTTACATCAG 59.066 37.037 3.32 0.00 0.00 2.90
25 26 7.801104 TCATTGGCCTAGATAAGTTTACATCA 58.199 34.615 3.32 0.00 0.00 3.07
26 27 7.095017 GCTCATTGGCCTAGATAAGTTTACATC 60.095 40.741 3.32 0.00 0.00 3.06
27 28 6.712547 GCTCATTGGCCTAGATAAGTTTACAT 59.287 38.462 3.32 0.00 0.00 2.29
28 29 6.055588 GCTCATTGGCCTAGATAAGTTTACA 58.944 40.000 3.32 0.00 0.00 2.41
29 30 6.055588 TGCTCATTGGCCTAGATAAGTTTAC 58.944 40.000 3.32 0.00 0.00 2.01
30 31 6.247229 TGCTCATTGGCCTAGATAAGTTTA 57.753 37.500 3.32 0.00 0.00 2.01
31 32 5.116084 TGCTCATTGGCCTAGATAAGTTT 57.884 39.130 3.32 0.00 0.00 2.66
32 33 4.778213 TGCTCATTGGCCTAGATAAGTT 57.222 40.909 3.32 0.00 0.00 2.66
33 34 4.596643 AGATGCTCATTGGCCTAGATAAGT 59.403 41.667 3.32 0.00 0.00 2.24
34 35 4.936411 CAGATGCTCATTGGCCTAGATAAG 59.064 45.833 3.32 0.00 0.00 1.73
35 36 4.349048 ACAGATGCTCATTGGCCTAGATAA 59.651 41.667 3.32 0.00 0.00 1.75
36 37 3.906218 ACAGATGCTCATTGGCCTAGATA 59.094 43.478 3.32 0.00 0.00 1.98
37 38 2.709934 ACAGATGCTCATTGGCCTAGAT 59.290 45.455 3.32 0.00 0.00 1.98
38 39 2.121948 ACAGATGCTCATTGGCCTAGA 58.878 47.619 3.32 0.00 0.00 2.43
39 40 2.634815 ACAGATGCTCATTGGCCTAG 57.365 50.000 3.32 0.00 0.00 3.02
40 41 3.370840 AAACAGATGCTCATTGGCCTA 57.629 42.857 3.32 0.00 0.00 3.93
41 42 2.226962 AAACAGATGCTCATTGGCCT 57.773 45.000 3.32 0.00 0.00 5.19
42 43 2.028748 ACAAAACAGATGCTCATTGGCC 60.029 45.455 0.00 0.00 0.00 5.36
43 44 3.308438 ACAAAACAGATGCTCATTGGC 57.692 42.857 0.00 0.00 0.00 4.52
44 45 5.771469 TGTAACAAAACAGATGCTCATTGG 58.229 37.500 0.00 0.00 0.00 3.16
45 46 7.878477 ATTGTAACAAAACAGATGCTCATTG 57.122 32.000 0.00 0.00 0.00 2.82
51 52 9.840427 ACACTATAATTGTAACAAAACAGATGC 57.160 29.630 0.00 0.00 0.00 3.91
54 55 9.562408 TCCACACTATAATTGTAACAAAACAGA 57.438 29.630 0.00 0.00 0.00 3.41
56 57 9.953697 GTTCCACACTATAATTGTAACAAAACA 57.046 29.630 0.00 0.00 0.00 2.83
57 58 9.109533 CGTTCCACACTATAATTGTAACAAAAC 57.890 33.333 0.00 0.00 0.00 2.43
58 59 7.804129 GCGTTCCACACTATAATTGTAACAAAA 59.196 33.333 0.00 0.00 0.00 2.44
59 60 7.041303 TGCGTTCCACACTATAATTGTAACAAA 60.041 33.333 0.00 0.00 0.00 2.83
60 61 6.427242 TGCGTTCCACACTATAATTGTAACAA 59.573 34.615 0.00 0.00 0.00 2.83
61 62 5.932883 TGCGTTCCACACTATAATTGTAACA 59.067 36.000 0.00 0.00 0.00 2.41
62 63 6.411630 TGCGTTCCACACTATAATTGTAAC 57.588 37.500 0.00 0.00 0.00 2.50
63 64 5.064198 GCTGCGTTCCACACTATAATTGTAA 59.936 40.000 0.00 0.00 0.00 2.41
64 65 4.569162 GCTGCGTTCCACACTATAATTGTA 59.431 41.667 0.00 0.00 0.00 2.41
65 66 3.374058 GCTGCGTTCCACACTATAATTGT 59.626 43.478 0.00 0.00 0.00 2.71
66 67 3.373748 TGCTGCGTTCCACACTATAATTG 59.626 43.478 0.00 0.00 0.00 2.32
67 68 3.605634 TGCTGCGTTCCACACTATAATT 58.394 40.909 0.00 0.00 0.00 1.40
68 69 3.260475 TGCTGCGTTCCACACTATAAT 57.740 42.857 0.00 0.00 0.00 1.28
69 70 2.739913 GTTGCTGCGTTCCACACTATAA 59.260 45.455 0.00 0.00 0.00 0.98
70 71 2.343101 GTTGCTGCGTTCCACACTATA 58.657 47.619 0.00 0.00 0.00 1.31
71 72 1.156736 GTTGCTGCGTTCCACACTAT 58.843 50.000 0.00 0.00 0.00 2.12
72 73 1.218875 CGTTGCTGCGTTCCACACTA 61.219 55.000 0.00 0.00 0.00 2.74
73 74 2.534019 CGTTGCTGCGTTCCACACT 61.534 57.895 0.00 0.00 0.00 3.55
74 75 2.052237 CGTTGCTGCGTTCCACAC 60.052 61.111 0.00 0.00 0.00 3.82
75 76 2.202946 TCGTTGCTGCGTTCCACA 60.203 55.556 0.00 0.00 0.00 4.17
76 77 2.244651 ACTCGTTGCTGCGTTCCAC 61.245 57.895 0.00 0.00 0.00 4.02
77 78 2.108157 ACTCGTTGCTGCGTTCCA 59.892 55.556 0.00 0.00 0.00 3.53
78 79 2.551270 CACTCGTTGCTGCGTTCC 59.449 61.111 0.00 0.00 0.00 3.62
79 80 1.954146 TCCACTCGTTGCTGCGTTC 60.954 57.895 0.00 0.00 0.00 3.95
80 81 2.108157 TCCACTCGTTGCTGCGTT 59.892 55.556 0.00 0.00 0.00 4.84
81 82 1.802337 TAGTCCACTCGTTGCTGCGT 61.802 55.000 0.00 0.00 0.00 5.24
82 83 1.073216 CTAGTCCACTCGTTGCTGCG 61.073 60.000 0.00 0.00 0.00 5.18
83 84 0.243907 TCTAGTCCACTCGTTGCTGC 59.756 55.000 0.00 0.00 0.00 5.25
84 85 2.534298 CATCTAGTCCACTCGTTGCTG 58.466 52.381 0.00 0.00 0.00 4.41
85 86 1.478510 CCATCTAGTCCACTCGTTGCT 59.521 52.381 0.00 0.00 0.00 3.91
86 87 1.204941 ACCATCTAGTCCACTCGTTGC 59.795 52.381 0.00 0.00 0.00 4.17
87 88 2.492088 TCACCATCTAGTCCACTCGTTG 59.508 50.000 0.00 0.00 0.00 4.10
88 89 2.803956 TCACCATCTAGTCCACTCGTT 58.196 47.619 0.00 0.00 0.00 3.85
89 90 2.509166 TCACCATCTAGTCCACTCGT 57.491 50.000 0.00 0.00 0.00 4.18
90 91 4.115516 CAATTCACCATCTAGTCCACTCG 58.884 47.826 0.00 0.00 0.00 4.18
91 92 4.162320 TCCAATTCACCATCTAGTCCACTC 59.838 45.833 0.00 0.00 0.00 3.51
92 93 4.104086 TCCAATTCACCATCTAGTCCACT 58.896 43.478 0.00 0.00 0.00 4.00
93 94 4.080863 ACTCCAATTCACCATCTAGTCCAC 60.081 45.833 0.00 0.00 0.00 4.02
94 95 4.104086 ACTCCAATTCACCATCTAGTCCA 58.896 43.478 0.00 0.00 0.00 4.02
95 96 4.762289 ACTCCAATTCACCATCTAGTCC 57.238 45.455 0.00 0.00 0.00 3.85
96 97 5.602628 GGTACTCCAATTCACCATCTAGTC 58.397 45.833 0.00 0.00 0.00 2.59
97 98 4.099573 CGGTACTCCAATTCACCATCTAGT 59.900 45.833 0.00 0.00 0.00 2.57
98 99 4.099573 ACGGTACTCCAATTCACCATCTAG 59.900 45.833 0.00 0.00 0.00 2.43
99 100 4.028131 ACGGTACTCCAATTCACCATCTA 58.972 43.478 0.00 0.00 0.00 1.98
100 101 2.838202 ACGGTACTCCAATTCACCATCT 59.162 45.455 0.00 0.00 0.00 2.90
101 102 3.261981 ACGGTACTCCAATTCACCATC 57.738 47.619 0.00 0.00 0.00 3.51
102 103 3.773119 ACTACGGTACTCCAATTCACCAT 59.227 43.478 0.00 0.00 0.00 3.55
103 104 3.167485 ACTACGGTACTCCAATTCACCA 58.833 45.455 0.00 0.00 0.00 4.17
104 105 3.881937 ACTACGGTACTCCAATTCACC 57.118 47.619 0.00 0.00 0.00 4.02
105 106 5.824904 TCTACTACGGTACTCCAATTCAC 57.175 43.478 0.00 0.00 0.00 3.18
106 107 6.124340 TCATCTACTACGGTACTCCAATTCA 58.876 40.000 0.00 0.00 0.00 2.57
107 108 6.630444 TCATCTACTACGGTACTCCAATTC 57.370 41.667 0.00 0.00 0.00 2.17
108 109 6.516860 GCATCATCTACTACGGTACTCCAATT 60.517 42.308 0.00 0.00 0.00 2.32
109 110 5.047943 GCATCATCTACTACGGTACTCCAAT 60.048 44.000 0.00 0.00 0.00 3.16
110 111 4.277672 GCATCATCTACTACGGTACTCCAA 59.722 45.833 0.00 0.00 0.00 3.53
111 112 3.819337 GCATCATCTACTACGGTACTCCA 59.181 47.826 0.00 0.00 0.00 3.86
112 113 3.190953 GGCATCATCTACTACGGTACTCC 59.809 52.174 0.00 0.00 0.00 3.85
113 114 3.819337 TGGCATCATCTACTACGGTACTC 59.181 47.826 0.00 0.00 0.00 2.59
114 115 3.828921 TGGCATCATCTACTACGGTACT 58.171 45.455 0.00 0.00 0.00 2.73
115 116 4.547532 CTTGGCATCATCTACTACGGTAC 58.452 47.826 0.00 0.00 0.00 3.34
116 117 3.572682 CCTTGGCATCATCTACTACGGTA 59.427 47.826 0.00 0.00 0.00 4.02
117 118 2.365617 CCTTGGCATCATCTACTACGGT 59.634 50.000 0.00 0.00 0.00 4.83
118 119 2.628178 TCCTTGGCATCATCTACTACGG 59.372 50.000 0.00 0.00 0.00 4.02
119 120 4.527509 ATCCTTGGCATCATCTACTACG 57.472 45.455 0.00 0.00 0.00 3.51
120 121 7.445945 ACTAAATCCTTGGCATCATCTACTAC 58.554 38.462 0.00 0.00 0.00 2.73
121 122 7.290014 TGACTAAATCCTTGGCATCATCTACTA 59.710 37.037 0.00 0.00 0.00 1.82
122 123 6.100279 TGACTAAATCCTTGGCATCATCTACT 59.900 38.462 0.00 0.00 0.00 2.57
123 124 6.291377 TGACTAAATCCTTGGCATCATCTAC 58.709 40.000 0.00 0.00 0.00 2.59
124 125 6.464892 CCTGACTAAATCCTTGGCATCATCTA 60.465 42.308 0.00 0.00 0.00 1.98
125 126 5.374921 CTGACTAAATCCTTGGCATCATCT 58.625 41.667 0.00 0.00 0.00 2.90
126 127 4.518211 CCTGACTAAATCCTTGGCATCATC 59.482 45.833 0.00 0.00 0.00 2.92
127 128 4.166725 TCCTGACTAAATCCTTGGCATCAT 59.833 41.667 0.00 0.00 0.00 2.45
128 129 3.523157 TCCTGACTAAATCCTTGGCATCA 59.477 43.478 0.00 0.00 0.00 3.07
129 130 4.156455 TCCTGACTAAATCCTTGGCATC 57.844 45.455 0.00 0.00 0.00 3.91
130 131 4.803329 ATCCTGACTAAATCCTTGGCAT 57.197 40.909 0.00 0.00 0.00 4.40
131 132 4.591321 AATCCTGACTAAATCCTTGGCA 57.409 40.909 0.00 0.00 0.00 4.92
132 133 5.196695 AGAAATCCTGACTAAATCCTTGGC 58.803 41.667 0.00 0.00 0.00 4.52
133 134 6.418101 TGAGAAATCCTGACTAAATCCTTGG 58.582 40.000 0.00 0.00 0.00 3.61
134 135 7.228308 GGATGAGAAATCCTGACTAAATCCTTG 59.772 40.741 0.00 0.00 35.36 3.61
135 136 7.128573 AGGATGAGAAATCCTGACTAAATCCTT 59.871 37.037 6.09 0.00 46.18 3.36
136 137 6.619023 AGGATGAGAAATCCTGACTAAATCCT 59.381 38.462 6.09 0.00 46.18 3.24
137 138 6.836242 AGGATGAGAAATCCTGACTAAATCC 58.164 40.000 6.09 0.00 46.18 3.01
148 149 5.679601 AGAGCTAAACAGGATGAGAAATCC 58.320 41.667 0.00 0.00 39.69 3.01
149 150 5.757808 GGAGAGCTAAACAGGATGAGAAATC 59.242 44.000 0.00 0.00 39.69 2.17
150 151 5.428131 AGGAGAGCTAAACAGGATGAGAAAT 59.572 40.000 0.00 0.00 39.69 2.17
151 152 4.780021 AGGAGAGCTAAACAGGATGAGAAA 59.220 41.667 0.00 0.00 39.69 2.52
152 153 4.357325 AGGAGAGCTAAACAGGATGAGAA 58.643 43.478 0.00 0.00 39.69 2.87
153 154 3.987745 AGGAGAGCTAAACAGGATGAGA 58.012 45.455 0.00 0.00 39.69 3.27
154 155 4.751767 AAGGAGAGCTAAACAGGATGAG 57.248 45.455 0.00 0.00 39.69 2.90
155 156 5.505181 AAAAGGAGAGCTAAACAGGATGA 57.495 39.130 0.00 0.00 39.69 2.92
156 157 8.831550 GTTATAAAAGGAGAGCTAAACAGGATG 58.168 37.037 0.00 0.00 46.00 3.51
157 158 7.711339 CGTTATAAAAGGAGAGCTAAACAGGAT 59.289 37.037 0.00 0.00 0.00 3.24
158 159 7.039882 CGTTATAAAAGGAGAGCTAAACAGGA 58.960 38.462 0.00 0.00 0.00 3.86
159 160 6.238130 GCGTTATAAAAGGAGAGCTAAACAGG 60.238 42.308 0.00 0.00 0.00 4.00
160 161 6.508088 CGCGTTATAAAAGGAGAGCTAAACAG 60.508 42.308 0.00 0.00 0.00 3.16
161 162 5.290158 CGCGTTATAAAAGGAGAGCTAAACA 59.710 40.000 0.00 0.00 0.00 2.83
162 163 5.517770 TCGCGTTATAAAAGGAGAGCTAAAC 59.482 40.000 5.77 0.00 0.00 2.01
163 164 5.517770 GTCGCGTTATAAAAGGAGAGCTAAA 59.482 40.000 5.77 0.00 31.37 1.85
164 165 5.039333 GTCGCGTTATAAAAGGAGAGCTAA 58.961 41.667 5.77 0.00 31.37 3.09
165 166 4.096833 TGTCGCGTTATAAAAGGAGAGCTA 59.903 41.667 5.77 0.00 31.37 3.32
166 167 3.119245 TGTCGCGTTATAAAAGGAGAGCT 60.119 43.478 5.77 0.00 31.37 4.09
167 168 3.000022 GTGTCGCGTTATAAAAGGAGAGC 60.000 47.826 5.77 0.00 31.37 4.09
168 169 4.265556 CAGTGTCGCGTTATAAAAGGAGAG 59.734 45.833 5.77 0.00 31.37 3.20
169 170 4.082625 TCAGTGTCGCGTTATAAAAGGAGA 60.083 41.667 5.77 0.00 0.00 3.71
170 171 4.171005 TCAGTGTCGCGTTATAAAAGGAG 58.829 43.478 5.77 0.00 0.00 3.69
171 172 4.177165 TCAGTGTCGCGTTATAAAAGGA 57.823 40.909 5.77 0.00 0.00 3.36
172 173 4.624024 TCTTCAGTGTCGCGTTATAAAAGG 59.376 41.667 5.77 0.00 0.00 3.11
173 174 5.571741 TCTCTTCAGTGTCGCGTTATAAAAG 59.428 40.000 5.77 5.39 0.00 2.27
174 175 5.344128 GTCTCTTCAGTGTCGCGTTATAAAA 59.656 40.000 5.77 0.00 0.00 1.52
175 176 4.855388 GTCTCTTCAGTGTCGCGTTATAAA 59.145 41.667 5.77 0.00 0.00 1.40
176 177 4.155462 AGTCTCTTCAGTGTCGCGTTATAA 59.845 41.667 5.77 0.00 0.00 0.98
177 178 3.688185 AGTCTCTTCAGTGTCGCGTTATA 59.312 43.478 5.77 0.00 0.00 0.98
178 179 2.488545 AGTCTCTTCAGTGTCGCGTTAT 59.511 45.455 5.77 0.00 0.00 1.89
179 180 1.878088 AGTCTCTTCAGTGTCGCGTTA 59.122 47.619 5.77 0.00 0.00 3.18
180 181 0.669077 AGTCTCTTCAGTGTCGCGTT 59.331 50.000 5.77 0.00 0.00 4.84
181 182 0.669077 AAGTCTCTTCAGTGTCGCGT 59.331 50.000 5.77 0.00 0.00 6.01
182 183 1.772182 AAAGTCTCTTCAGTGTCGCG 58.228 50.000 0.00 0.00 0.00 5.87
183 184 3.303395 CCAAAAAGTCTCTTCAGTGTCGC 60.303 47.826 0.00 0.00 0.00 5.19
184 185 3.871594 ACCAAAAAGTCTCTTCAGTGTCG 59.128 43.478 0.00 0.00 0.00 4.35
185 186 4.876107 TCACCAAAAAGTCTCTTCAGTGTC 59.124 41.667 0.00 0.00 0.00 3.67
186 187 4.636206 GTCACCAAAAAGTCTCTTCAGTGT 59.364 41.667 0.00 0.00 0.00 3.55
187 188 4.635765 TGTCACCAAAAAGTCTCTTCAGTG 59.364 41.667 0.00 0.00 0.00 3.66
188 189 4.843728 TGTCACCAAAAAGTCTCTTCAGT 58.156 39.130 0.00 0.00 0.00 3.41
189 190 4.878397 ACTGTCACCAAAAAGTCTCTTCAG 59.122 41.667 0.00 0.00 0.00 3.02
190 191 4.843728 ACTGTCACCAAAAAGTCTCTTCA 58.156 39.130 0.00 0.00 0.00 3.02
191 192 5.050023 GCTACTGTCACCAAAAAGTCTCTTC 60.050 44.000 0.00 0.00 0.00 2.87
192 193 4.816925 GCTACTGTCACCAAAAAGTCTCTT 59.183 41.667 0.00 0.00 0.00 2.85
193 194 4.141711 TGCTACTGTCACCAAAAAGTCTCT 60.142 41.667 0.00 0.00 0.00 3.10
214 215 2.144730 CCAGAAGCTAGATCATGCTGC 58.855 52.381 12.20 10.69 39.71 5.25
234 235 2.769095 AGATCTCCAACTTCCAGGCTAC 59.231 50.000 0.00 0.00 0.00 3.58
241 245 7.093684 ACAGTTAAGACTAGATCTCCAACTTCC 60.094 40.741 0.00 0.00 39.15 3.46
319 323 8.405418 ACATAAATGATGCAGAAATGAGCTAT 57.595 30.769 0.00 0.00 39.39 2.97
342 346 4.824537 TGTAGCACAAGCAAGGAAATAACA 59.175 37.500 0.00 0.00 45.49 2.41
359 365 6.472016 TGAAACATAGTCCTTCAATGTAGCA 58.528 36.000 0.00 0.00 33.59 3.49
360 366 6.457528 GCTGAAACATAGTCCTTCAATGTAGC 60.458 42.308 0.00 0.00 33.59 3.58
361 367 6.595326 TGCTGAAACATAGTCCTTCAATGTAG 59.405 38.462 0.00 0.00 33.59 2.74
368 374 2.673368 CCGTGCTGAAACATAGTCCTTC 59.327 50.000 0.00 0.00 0.00 3.46
389 395 4.938226 ACTAGACCAACTTGCATCTAAAGC 59.062 41.667 0.00 0.00 0.00 3.51
410 416 7.888250 TTAGATATGACACAGATCACAGACT 57.112 36.000 8.64 0.00 34.90 3.24
440 446 8.393366 CCTTACAATTCTACAAGTCATCATGTG 58.607 37.037 0.00 0.00 0.00 3.21
495 501 9.626045 AAGTAAATAAAATGTAGTTCTTGCTGC 57.374 29.630 0.00 0.00 0.00 5.25
530 536 4.082026 AGGTTTAGCATCAACTTGGATTGC 60.082 41.667 0.00 4.88 0.00 3.56
667 1142 1.279271 ACTTGCCAGACGCTTTCCTAT 59.721 47.619 0.00 0.00 38.78 2.57
712 1187 0.398806 TATAGGCCGGCTGGGTAACA 60.399 55.000 28.56 2.82 38.44 2.41
760 1235 5.243730 ACATGGCTTTAAACAAGCACTGTAT 59.756 36.000 8.74 0.00 44.71 2.29
767 1242 5.733226 AACAAACATGGCTTTAAACAAGC 57.267 34.783 0.00 0.00 42.30 4.01
905 1380 9.248291 GCATATAAAATACCCAATGTGTTCTTG 57.752 33.333 0.00 0.00 0.00 3.02
1224 1716 2.027625 GCCGTTCTGGTCCTTGTCG 61.028 63.158 0.00 0.00 41.21 4.35
1416 1908 2.092914 AGCTTATTTCGTGGGAGGGAAG 60.093 50.000 0.00 0.00 0.00 3.46
1417 1909 1.913419 AGCTTATTTCGTGGGAGGGAA 59.087 47.619 0.00 0.00 0.00 3.97
1445 1937 2.165030 GTCTGGCATTCCAATCCACTTG 59.835 50.000 0.00 0.00 42.91 3.16
1446 1938 2.225091 TGTCTGGCATTCCAATCCACTT 60.225 45.455 0.00 0.00 42.91 3.16
1447 1939 1.355381 TGTCTGGCATTCCAATCCACT 59.645 47.619 0.00 0.00 42.91 4.00
1448 1940 1.747355 CTGTCTGGCATTCCAATCCAC 59.253 52.381 0.00 0.00 42.91 4.02
1453 1956 1.338105 CGAGTCTGTCTGGCATTCCAA 60.338 52.381 0.00 0.00 42.91 3.53
1475 1978 7.707774 AAAACATAGCACAAAATACAACCAC 57.292 32.000 0.00 0.00 0.00 4.16
1505 2015 2.200373 ACCCAACAGGCAACAGTATC 57.800 50.000 0.00 0.00 40.58 2.24
1506 2016 2.642807 ACTACCCAACAGGCAACAGTAT 59.357 45.455 0.00 0.00 40.58 2.12
1542 2052 3.119101 CCAAGACTACACCGCTACAAGAT 60.119 47.826 0.00 0.00 0.00 2.40
1543 2053 2.230508 CCAAGACTACACCGCTACAAGA 59.769 50.000 0.00 0.00 0.00 3.02
1544 2054 2.607187 CCAAGACTACACCGCTACAAG 58.393 52.381 0.00 0.00 0.00 3.16
1545 2055 1.274167 CCCAAGACTACACCGCTACAA 59.726 52.381 0.00 0.00 0.00 2.41
1561 2071 4.113815 CCGATGCTGCTCCCCCAA 62.114 66.667 0.00 0.00 0.00 4.12
1563 2073 2.631012 AATTCCGATGCTGCTCCCCC 62.631 60.000 0.00 0.00 0.00 5.40
1582 2092 5.591067 CACAACCAAAAGAAACCAGGTAGTA 59.409 40.000 0.00 0.00 31.10 1.82
1583 2093 4.401202 CACAACCAAAAGAAACCAGGTAGT 59.599 41.667 0.00 0.00 31.10 2.73
1584 2094 4.202111 CCACAACCAAAAGAAACCAGGTAG 60.202 45.833 0.00 0.00 31.10 3.18
1645 2165 4.436365 CAAAAACCGAGATTTGCACAAC 57.564 40.909 0.00 0.00 30.62 3.32
1668 2188 1.369689 CAGACACGCAAACTGCAGC 60.370 57.895 15.27 0.00 45.36 5.25
1680 2200 2.163412 TGAACACAAACCAAGCAGACAC 59.837 45.455 0.00 0.00 0.00 3.67
1701 2221 2.345760 CGGCCAGCATTTTGGAGCT 61.346 57.895 2.24 0.00 40.87 4.09
1755 2276 0.396811 CCACCGAAGTTCCAGAAGGT 59.603 55.000 0.00 0.00 35.89 3.50
1756 2277 0.396811 ACCACCGAAGTTCCAGAAGG 59.603 55.000 0.00 0.00 0.00 3.46
1757 2278 2.931320 GCTACCACCGAAGTTCCAGAAG 60.931 54.545 0.00 0.00 0.00 2.85
1760 2281 0.608640 AGCTACCACCGAAGTTCCAG 59.391 55.000 0.00 0.00 0.00 3.86
1761 2282 0.320374 CAGCTACCACCGAAGTTCCA 59.680 55.000 0.00 0.00 0.00 3.53
1763 2284 1.000506 TCACAGCTACCACCGAAGTTC 59.999 52.381 0.00 0.00 0.00 3.01
1777 2307 1.727213 GCGCAGTTCAGAAATCACAGC 60.727 52.381 0.30 0.00 0.00 4.40
1778 2308 1.802960 AGCGCAGTTCAGAAATCACAG 59.197 47.619 11.47 0.00 0.00 3.66
1779 2309 1.532437 CAGCGCAGTTCAGAAATCACA 59.468 47.619 11.47 0.00 0.00 3.58
1785 2315 2.253758 GCACCAGCGCAGTTCAGAA 61.254 57.895 11.47 0.00 0.00 3.02
1809 2339 3.244579 GTCGTCCAACAACTGTACAAGAC 59.755 47.826 0.00 0.00 0.00 3.01
1810 2340 3.450578 GTCGTCCAACAACTGTACAAGA 58.549 45.455 0.00 0.00 0.00 3.02
1812 2342 2.195096 CGTCGTCCAACAACTGTACAA 58.805 47.619 0.00 0.00 0.00 2.41
1833 2365 2.473235 GCTGTCGACTTGAGTTCTGTTC 59.527 50.000 17.92 0.00 0.00 3.18
1855 2387 3.197265 GACAAATGCAGCTGTTGGTTTT 58.803 40.909 16.64 5.72 0.00 2.43
1858 2390 0.311790 CGACAAATGCAGCTGTTGGT 59.688 50.000 16.64 6.17 0.00 3.67
1873 2405 3.134081 GGATCCCTGTTTAGATTCCGACA 59.866 47.826 0.00 0.00 0.00 4.35
1896 2428 1.355720 GCTAACCAGGCCCCATCATAT 59.644 52.381 0.00 0.00 0.00 1.78
1897 2429 0.771127 GCTAACCAGGCCCCATCATA 59.229 55.000 0.00 0.00 0.00 2.15
1899 2431 1.619363 AGCTAACCAGGCCCCATCA 60.619 57.895 0.00 0.00 0.00 3.07
1900 2432 1.149401 GAGCTAACCAGGCCCCATC 59.851 63.158 0.00 0.00 0.00 3.51
1901 2433 2.746375 CGAGCTAACCAGGCCCCAT 61.746 63.158 0.00 0.00 0.00 4.00
1903 2435 3.081409 TCGAGCTAACCAGGCCCC 61.081 66.667 0.00 0.00 0.00 5.80
1904 2436 1.403687 ATCTCGAGCTAACCAGGCCC 61.404 60.000 7.81 0.00 0.00 5.80
1905 2437 0.032815 GATCTCGAGCTAACCAGGCC 59.967 60.000 7.81 0.00 0.00 5.19
1906 2438 0.032815 GGATCTCGAGCTAACCAGGC 59.967 60.000 7.81 0.00 0.00 4.85
1907 2439 1.339610 CTGGATCTCGAGCTAACCAGG 59.660 57.143 24.98 14.48 40.50 4.45
1908 2440 1.269517 GCTGGATCTCGAGCTAACCAG 60.270 57.143 26.70 26.70 43.18 4.00
1909 2441 0.747255 GCTGGATCTCGAGCTAACCA 59.253 55.000 7.81 12.56 43.18 3.67
1910 2442 3.579066 GCTGGATCTCGAGCTAACC 57.421 57.895 7.81 8.61 43.18 2.85
1915 2447 1.363443 CAGGAGCTGGATCTCGAGC 59.637 63.158 7.81 6.12 46.23 5.03
1948 2532 2.440539 AAACACCAGAGAGTACAGCG 57.559 50.000 0.00 0.00 0.00 5.18
1959 2543 3.119316 TGGTACAAGTTGCAAAACACCAG 60.119 43.478 0.00 0.00 31.92 4.00
2034 2620 3.181473 CCACTTCCATGCCATATTGTTGG 60.181 47.826 0.00 0.00 39.94 3.77
2055 2641 7.713942 TGATCATCATAGCATAGCATGATTACC 59.286 37.037 0.00 1.30 34.90 2.85
2061 2647 7.762382 ACAATTGATCATCATAGCATAGCATG 58.238 34.615 13.59 0.00 0.00 4.06
2091 2678 0.325272 TGGCGCCAACCAACTATGTA 59.675 50.000 30.74 0.00 36.55 2.29
2096 2683 4.586235 AGCTGGCGCCAACCAACT 62.586 61.111 32.09 18.95 39.86 3.16
2126 2713 3.069586 GGACAGGTTGAAAAGGGAAAAGG 59.930 47.826 0.00 0.00 0.00 3.11
2127 2717 3.243401 CGGACAGGTTGAAAAGGGAAAAG 60.243 47.826 0.00 0.00 0.00 2.27
2213 2803 7.718753 TGGCATTTTTATGGTGAAGATGTTTTT 59.281 29.630 0.00 0.00 0.00 1.94
2214 2804 7.222872 TGGCATTTTTATGGTGAAGATGTTTT 58.777 30.769 0.00 0.00 0.00 2.43
2215 2805 6.767456 TGGCATTTTTATGGTGAAGATGTTT 58.233 32.000 0.00 0.00 0.00 2.83
2216 2806 6.357579 TGGCATTTTTATGGTGAAGATGTT 57.642 33.333 0.00 0.00 0.00 2.71
2217 2807 5.999205 TGGCATTTTTATGGTGAAGATGT 57.001 34.783 0.00 0.00 0.00 3.06
2218 2808 7.670009 TTTTGGCATTTTTATGGTGAAGATG 57.330 32.000 0.00 0.00 0.00 2.90
2238 2828 4.508861 CCAAGTTGAACTCTGCCAATTTTG 59.491 41.667 3.87 0.00 0.00 2.44
2244 2834 1.064758 ACACCAAGTTGAACTCTGCCA 60.065 47.619 3.87 0.00 0.00 4.92
2257 2847 2.161012 GCACATGACAGATGACACCAAG 59.839 50.000 0.00 0.00 0.00 3.61
2258 2848 2.153645 GCACATGACAGATGACACCAA 58.846 47.619 0.00 0.00 0.00 3.67
2259 2849 1.072015 TGCACATGACAGATGACACCA 59.928 47.619 0.00 0.00 0.00 4.17
2260 2850 1.736126 CTGCACATGACAGATGACACC 59.264 52.381 13.15 0.00 37.32 4.16
2261 2851 1.129998 GCTGCACATGACAGATGACAC 59.870 52.381 20.00 2.55 37.32 3.67
2262 2852 1.445871 GCTGCACATGACAGATGACA 58.554 50.000 20.00 2.29 37.32 3.58
2263 2853 0.372679 CGCTGCACATGACAGATGAC 59.627 55.000 20.00 5.60 37.32 3.06
2264 2854 0.247185 TCGCTGCACATGACAGATGA 59.753 50.000 20.00 14.48 37.32 2.92
2265 2855 1.296727 ATCGCTGCACATGACAGATG 58.703 50.000 20.00 12.90 37.32 2.90
2266 2856 2.034104 AATCGCTGCACATGACAGAT 57.966 45.000 20.00 6.93 37.32 2.90
2267 2857 1.465777 CAAATCGCTGCACATGACAGA 59.534 47.619 20.00 5.21 37.32 3.41
2268 2858 1.891178 CAAATCGCTGCACATGACAG 58.109 50.000 13.84 13.84 38.22 3.51
2269 2859 0.109643 GCAAATCGCTGCACATGACA 60.110 50.000 0.00 0.00 42.17 3.58
2270 2860 2.645411 GCAAATCGCTGCACATGAC 58.355 52.632 0.00 0.00 42.17 3.06
2328 2918 5.641209 ACAGGTCAAAAATCAAGAGAGATCG 59.359 40.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.