Multiple sequence alignment - TraesCS1A01G308100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G308100 chr1A 100.000 3602 0 0 1706 5307 499449748 499446147 0.000000e+00 6652
1 TraesCS1A01G308100 chr1A 100.000 1456 0 0 1 1456 499451453 499449998 0.000000e+00 2689
2 TraesCS1A01G308100 chr1D 88.657 2971 215 53 2291 5204 403730398 403727493 0.000000e+00 3507
3 TraesCS1A01G308100 chr1D 89.761 1465 86 28 3 1454 403732948 403731535 0.000000e+00 1816
4 TraesCS1A01G308100 chr1D 93.689 206 13 0 1801 2006 403731533 403731328 5.160000e-80 309
5 TraesCS1A01G308100 chr1D 89.796 245 18 4 2280 2517 403730888 403730644 1.860000e-79 307
6 TraesCS1A01G308100 chr1D 93.989 183 11 0 2045 2227 403731323 403731141 1.460000e-70 278
7 TraesCS1A01G308100 chr1D 95.000 100 3 2 5205 5303 403727366 403727268 7.120000e-34 156
8 TraesCS1A01G308100 chr1D 83.333 174 17 8 291 461 173135164 173135000 3.310000e-32 150
9 TraesCS1A01G308100 chr1B 88.954 2915 214 53 2291 5149 543181112 543178250 0.000000e+00 3500
10 TraesCS1A01G308100 chr1B 96.891 579 18 0 876 1454 543182637 543182059 0.000000e+00 970
11 TraesCS1A01G308100 chr1B 87.500 848 58 17 3 836 543183880 543183067 0.000000e+00 935
12 TraesCS1A01G308100 chr1B 91.446 491 32 6 2045 2525 543181846 543181356 0.000000e+00 665
13 TraesCS1A01G308100 chr1B 95.500 200 9 0 1801 2000 543182057 543181858 2.380000e-83 320
14 TraesCS1A01G308100 chr1B 86.207 145 10 5 383 527 254232949 254233083 1.190000e-31 148
15 TraesCS1A01G308100 chr3B 86.885 488 49 7 290 775 583329012 583329486 2.810000e-147 532
16 TraesCS1A01G308100 chr3B 95.575 113 4 1 1706 1817 627921404 627921516 4.220000e-41 180
17 TraesCS1A01G308100 chr7D 86.475 488 51 6 290 775 556058193 556057719 6.090000e-144 521
18 TraesCS1A01G308100 chr6D 88.983 354 34 3 422 775 187568697 187568349 2.940000e-117 433
19 TraesCS1A01G308100 chr5A 88.636 176 17 1 600 775 26223089 26222917 1.500000e-50 211
20 TraesCS1A01G308100 chr5A 85.795 176 21 2 600 775 75008384 75008213 3.260000e-42 183
21 TraesCS1A01G308100 chr4A 96.429 112 3 1 1706 1817 529621187 529621077 3.260000e-42 183
22 TraesCS1A01G308100 chr3A 95.536 112 5 0 1706 1817 632617808 632617697 4.220000e-41 180
23 TraesCS1A01G308100 chr7A 92.742 124 6 3 1706 1826 636434195 636434318 5.460000e-40 176
24 TraesCS1A01G308100 chr7A 92.623 122 4 4 1706 1827 342425051 342424935 2.540000e-38 171
25 TraesCS1A01G308100 chr5B 95.536 112 1 4 1706 1817 491062152 491062045 5.460000e-40 176
26 TraesCS1A01G308100 chr5B 90.840 131 10 2 1706 1835 147439726 147439597 1.960000e-39 174
27 TraesCS1A01G308100 chr4D 94.737 114 4 2 1706 1818 12449311 12449199 5.460000e-40 176
28 TraesCS1A01G308100 chr4B 92.063 126 5 5 1706 1828 12892944 12892821 7.070000e-39 172
29 TraesCS1A01G308100 chr6A 87.075 147 8 9 381 527 246323030 246322895 7.120000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G308100 chr1A 499446147 499451453 5306 True 4670.500000 6652 100.000000 1 5307 2 chr1A.!!$R1 5306
1 TraesCS1A01G308100 chr1D 403727268 403732948 5680 True 1062.166667 3507 91.815333 3 5303 6 chr1D.!!$R2 5300
2 TraesCS1A01G308100 chr1B 543178250 543183880 5630 True 1278.000000 3500 92.058200 3 5149 5 chr1B.!!$R1 5146

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 452 0.242825 CGAGAGAGGTTGCGTGGTTA 59.757 55.000 0.0 0.0 0.00 2.85 F
777 809 0.532573 CGAGCCTGAGTGTGGTATGT 59.467 55.000 0.0 0.0 0.00 2.29 F
1748 2171 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.0 0.0 0.00 4.94 F
1768 2191 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.0 0.0 44.78 4.85 F
1781 2204 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.0 0.0 38.40 4.00 F
2652 3766 0.530744 TTCCAGACTCCGACCATTCG 59.469 55.000 0.0 0.0 45.44 3.34 F
3743 4874 1.065854 GCATACTCAAGGACCTGTGCT 60.066 52.381 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 2161 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69 R
1762 2185 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35 R
3298 4429 0.525761 CAATGAAATCGCCCCACGTT 59.474 50.000 0.00 0.00 44.19 3.99 R
3723 4854 1.065854 AGCACAGGTCCTTGAGTATGC 60.066 52.381 0.00 0.00 0.00 3.14 R
3743 4874 4.892965 AAGTTGGCACCCTGCGCA 62.893 61.111 10.98 10.98 46.21 6.09 R
4267 5401 0.251916 TCGCGTTCCAATGGGAGAAT 59.748 50.000 5.77 0.00 46.01 2.40 R
5058 6214 0.106918 AAAACACACTGGCCTCCGAA 60.107 50.000 3.32 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 107 1.527034 GGGTTTTCCGGTCAGGTAAC 58.473 55.000 0.00 0.00 41.82 2.50
194 202 2.517166 GAGGGCTCGATTTGGGGC 60.517 66.667 0.00 0.00 0.00 5.80
254 262 0.394352 GGGATTGGTGATCGGTGCTT 60.394 55.000 0.00 0.00 35.49 3.91
279 287 0.683412 GTAGGGTTCTGTTCCGTGGT 59.317 55.000 0.00 0.00 0.00 4.16
289 297 3.322541 TCTGTTCCGTGGTTTGATCTGTA 59.677 43.478 0.00 0.00 0.00 2.74
312 320 3.175240 CGAGAGCTGTTCCGCGTG 61.175 66.667 4.92 0.00 34.40 5.34
319 327 0.739813 GCTGTTCCGCGTGATTACCT 60.740 55.000 4.92 0.00 0.00 3.08
413 425 5.049954 TGTTTTTGGGAAGACGTAGAAATCG 60.050 40.000 0.00 0.00 0.00 3.34
414 426 4.524316 TTTGGGAAGACGTAGAAATCGA 57.476 40.909 0.00 0.00 0.00 3.59
415 427 3.777465 TGGGAAGACGTAGAAATCGAG 57.223 47.619 0.00 0.00 0.00 4.04
416 428 3.349927 TGGGAAGACGTAGAAATCGAGA 58.650 45.455 0.00 0.00 0.00 4.04
417 429 3.377485 TGGGAAGACGTAGAAATCGAGAG 59.623 47.826 0.00 0.00 0.00 3.20
418 430 3.377798 GGGAAGACGTAGAAATCGAGAGT 59.622 47.826 0.00 0.00 0.00 3.24
419 431 4.496175 GGGAAGACGTAGAAATCGAGAGTC 60.496 50.000 0.00 0.00 0.00 3.36
420 432 3.929417 AGACGTAGAAATCGAGAGTCG 57.071 47.619 0.00 0.00 42.10 4.18
438 452 0.242825 CGAGAGAGGTTGCGTGGTTA 59.757 55.000 0.00 0.00 0.00 2.85
461 481 9.182933 GTTAAATCTGATCGTAGTTAGGTCATC 57.817 37.037 0.00 0.00 0.00 2.92
464 484 3.548770 TGATCGTAGTTAGGTCATCGGT 58.451 45.455 0.00 0.00 0.00 4.69
465 485 3.949754 TGATCGTAGTTAGGTCATCGGTT 59.050 43.478 0.00 0.00 0.00 4.44
589 611 2.738521 GGATGCGTCGTGTGCAGT 60.739 61.111 0.00 0.00 46.98 4.40
631 663 8.821147 ACACACGTTTATTGAGTATTGACTTA 57.179 30.769 0.00 0.00 35.45 2.24
652 684 2.349590 TGTGAAATCACCTCGATGCTG 58.650 47.619 10.83 0.00 45.88 4.41
662 694 3.554232 CGATGCTGTCGTGTTGCT 58.446 55.556 4.26 0.00 45.19 3.91
663 695 1.131218 CGATGCTGTCGTGTTGCTG 59.869 57.895 4.26 0.00 45.19 4.41
664 696 1.499056 GATGCTGTCGTGTTGCTGG 59.501 57.895 0.00 0.00 0.00 4.85
665 697 1.227943 ATGCTGTCGTGTTGCTGGT 60.228 52.632 0.00 0.00 0.00 4.00
679 711 1.805254 CTGGTGGTATGCTTGCTGC 59.195 57.895 0.00 0.00 43.25 5.25
701 733 4.156739 GCAATAAGGTAGTTGCTTTGCTCT 59.843 41.667 3.07 0.00 45.41 4.09
704 736 3.051081 AGGTAGTTGCTTTGCTCTCTG 57.949 47.619 0.00 0.00 0.00 3.35
725 757 1.143073 GGAGTGTGTTCCTGGGAGTTT 59.857 52.381 0.00 0.00 34.27 2.66
731 763 4.036380 GTGTGTTCCTGGGAGTTTTAGTTG 59.964 45.833 0.00 0.00 0.00 3.16
736 768 3.655777 TCCTGGGAGTTTTAGTTGGACAT 59.344 43.478 0.00 0.00 0.00 3.06
744 776 7.103641 GGAGTTTTAGTTGGACATGTAGATGA 58.896 38.462 6.90 0.00 33.36 2.92
746 778 7.680730 AGTTTTAGTTGGACATGTAGATGACT 58.319 34.615 6.90 2.25 33.36 3.41
753 785 6.558771 TGGACATGTAGATGACTGTTTTTG 57.441 37.500 6.90 0.00 33.36 2.44
760 792 3.325870 AGATGACTGTTTTTGATCGCGA 58.674 40.909 13.09 13.09 0.00 5.87
774 806 2.970639 GCGAGCCTGAGTGTGGTA 59.029 61.111 0.00 0.00 0.00 3.25
775 807 1.517832 GCGAGCCTGAGTGTGGTAT 59.482 57.895 0.00 0.00 0.00 2.73
776 808 0.807667 GCGAGCCTGAGTGTGGTATG 60.808 60.000 0.00 0.00 0.00 2.39
777 809 0.532573 CGAGCCTGAGTGTGGTATGT 59.467 55.000 0.00 0.00 0.00 2.29
778 810 1.749063 CGAGCCTGAGTGTGGTATGTA 59.251 52.381 0.00 0.00 0.00 2.29
938 1360 9.043079 GGTTAGCTTCTACTGTTATACATTTCC 57.957 37.037 0.00 0.00 0.00 3.13
939 1361 9.595823 GTTAGCTTCTACTGTTATACATTTCCA 57.404 33.333 0.00 0.00 0.00 3.53
1378 1801 1.574702 GGCTGCCCGTGTAAGTTCAC 61.575 60.000 7.66 0.00 35.28 3.18
1391 1814 6.138761 GTGTAAGTTCACTTTCAAGCTCATG 58.861 40.000 0.00 0.00 35.53 3.07
1734 2157 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
1735 2158 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
1736 2159 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
1737 2160 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
1738 2161 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
1739 2162 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
1740 2163 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
1741 2164 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
1742 2165 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
1743 2166 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
1744 2167 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
1745 2168 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
1746 2169 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
1747 2170 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
1748 2171 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
1749 2172 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
1750 2173 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
1751 2174 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
1752 2175 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
1753 2176 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
1754 2177 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
1755 2178 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
1756 2179 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
1767 2190 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
1768 2191 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
1769 2192 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
1770 2193 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1771 2194 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
1772 2195 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
1773 2196 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
1774 2197 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
1775 2198 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
1776 2199 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
1777 2200 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
1778 2201 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
1779 2202 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
1780 2203 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
1781 2204 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
1782 2205 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
1786 2209 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
1787 2210 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
1788 2211 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
1789 2212 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
1790 2213 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
1791 2214 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
1792 2215 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
1793 2216 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
1813 2236 6.779539 AGGCTCCCCTTCAATTTAATAGATTG 59.220 38.462 0.00 0.00 38.74 2.67
1922 2345 5.066117 GCTTCTTTGATCTTCTCATGCATGA 59.934 40.000 27.10 27.10 32.72 3.07
1934 2357 7.490079 TCTTCTCATGCATGAATTTAATGTTGC 59.510 33.333 28.39 0.00 36.18 4.17
1979 2402 9.581099 GTTGGAAATTTCTTTCTTGAGTTTGTA 57.419 29.630 17.42 0.00 40.55 2.41
2017 2440 8.950007 AAGAACAGTAAATATTTTTCCCTCCA 57.050 30.769 5.91 0.00 0.00 3.86
2018 2441 8.349568 AGAACAGTAAATATTTTTCCCTCCAC 57.650 34.615 5.91 0.00 0.00 4.02
2019 2442 8.170730 AGAACAGTAAATATTTTTCCCTCCACT 58.829 33.333 5.91 0.00 0.00 4.00
2020 2443 7.939784 ACAGTAAATATTTTTCCCTCCACTC 57.060 36.000 5.91 0.00 0.00 3.51
2021 2444 6.890268 ACAGTAAATATTTTTCCCTCCACTCC 59.110 38.462 5.91 0.00 0.00 3.85
2022 2445 7.119387 CAGTAAATATTTTTCCCTCCACTCCT 58.881 38.462 5.91 0.00 0.00 3.69
2023 2446 8.272173 CAGTAAATATTTTTCCCTCCACTCCTA 58.728 37.037 5.91 0.00 0.00 2.94
2024 2447 8.842764 AGTAAATATTTTTCCCTCCACTCCTAA 58.157 33.333 5.91 0.00 0.00 2.69
2025 2448 9.470399 GTAAATATTTTTCCCTCCACTCCTAAA 57.530 33.333 5.91 0.00 0.00 1.85
2031 2454 9.868160 ATTTTTCCCTCCACTCCTAAATATTAG 57.132 33.333 0.00 0.00 0.00 1.73
2032 2455 7.388638 TTTCCCTCCACTCCTAAATATTAGG 57.611 40.000 9.44 9.44 36.06 2.69
2033 2456 6.303427 TCCCTCCACTCCTAAATATTAGGA 57.697 41.667 15.98 15.98 41.14 2.94
2034 2457 6.699688 TCCCTCCACTCCTAAATATTAGGAA 58.300 40.000 17.16 4.74 42.63 3.36
2035 2458 6.557633 TCCCTCCACTCCTAAATATTAGGAAC 59.442 42.308 17.16 0.00 42.63 3.62
2036 2459 6.456501 CCTCCACTCCTAAATATTAGGAACG 58.543 44.000 17.16 10.66 42.63 3.95
2037 2460 6.415206 TCCACTCCTAAATATTAGGAACGG 57.585 41.667 17.16 18.07 42.63 4.44
2038 2461 6.138263 TCCACTCCTAAATATTAGGAACGGA 58.862 40.000 21.31 21.31 42.63 4.69
2039 2462 6.612456 TCCACTCCTAAATATTAGGAACGGAA 59.388 38.462 22.17 12.77 42.63 4.30
2040 2463 6.929606 CCACTCCTAAATATTAGGAACGGAAG 59.070 42.308 19.51 11.11 42.63 3.46
2041 2464 6.929606 CACTCCTAAATATTAGGAACGGAAGG 59.070 42.308 17.16 8.40 42.63 3.46
2042 2465 6.842807 ACTCCTAAATATTAGGAACGGAAGGA 59.157 38.462 17.16 0.00 42.63 3.36
2043 2466 7.299246 TCCTAAATATTAGGAACGGAAGGAG 57.701 40.000 14.84 0.00 40.51 3.69
2057 2480 5.963594 ACGGAAGGAGTAGTTTCATAGTTC 58.036 41.667 0.00 0.00 0.00 3.01
2058 2481 5.479375 ACGGAAGGAGTAGTTTCATAGTTCA 59.521 40.000 0.00 0.00 0.00 3.18
2162 2585 5.329035 TGAAGCCTGATTATTTTCTTGGC 57.671 39.130 0.00 0.00 36.72 4.52
2286 2909 4.653888 CCCCACAACCCCGTCCAC 62.654 72.222 0.00 0.00 0.00 4.02
2302 2925 4.543692 CGTCCACTAATCCAGTATTACCG 58.456 47.826 0.00 0.00 34.98 4.02
2307 2930 4.982916 CACTAATCCAGTATTACCGTCTGC 59.017 45.833 0.00 0.00 34.98 4.26
2319 2942 2.388735 ACCGTCTGCTTGGATATCTGA 58.611 47.619 2.05 0.00 0.00 3.27
2342 2966 8.557592 TGATGATCAACATATCAGGCTTATTC 57.442 34.615 0.00 0.00 39.18 1.75
2439 3065 8.352942 GTTCTGTGACTTGAATTATGTTCCTTT 58.647 33.333 0.00 0.00 0.00 3.11
2440 3066 8.463930 TCTGTGACTTGAATTATGTTCCTTTT 57.536 30.769 0.00 0.00 0.00 2.27
2498 3129 6.452244 AGTTTGTTTTTCAATTAGCGATGC 57.548 33.333 0.00 0.00 35.84 3.91
2514 3145 4.457603 AGCGATGCTGTTACCAAAACATAA 59.542 37.500 0.00 0.00 37.57 1.90
2518 3149 7.647715 GCGATGCTGTTACCAAAACATAATTAT 59.352 33.333 0.00 0.00 0.00 1.28
2600 3707 8.999431 TCTTTGTCTGTTAAATTGATGTACTCC 58.001 33.333 0.00 0.00 0.00 3.85
2601 3708 8.684386 TTTGTCTGTTAAATTGATGTACTCCA 57.316 30.769 0.00 0.00 0.00 3.86
2603 3710 8.862325 TGTCTGTTAAATTGATGTACTCCATT 57.138 30.769 0.00 0.00 32.56 3.16
2604 3711 9.295825 TGTCTGTTAAATTGATGTACTCCATTT 57.704 29.630 0.00 2.74 34.54 2.32
2606 3713 9.513906 TCTGTTAAATTGATGTACTCCATTTGA 57.486 29.630 11.33 4.66 32.89 2.69
2623 3736 7.042950 TCCATTTGATACATTCTGCATTTTGG 58.957 34.615 0.00 0.00 0.00 3.28
2635 3749 5.653507 TCTGCATTTTGGTATCAGCATTTC 58.346 37.500 0.00 0.00 0.00 2.17
2636 3750 4.757594 TGCATTTTGGTATCAGCATTTCC 58.242 39.130 0.00 0.00 0.00 3.13
2638 3752 4.807304 GCATTTTGGTATCAGCATTTCCAG 59.193 41.667 0.00 0.00 0.00 3.86
2643 3757 3.118261 TGGTATCAGCATTTCCAGACTCC 60.118 47.826 0.00 0.00 0.00 3.85
2652 3766 0.530744 TTCCAGACTCCGACCATTCG 59.469 55.000 0.00 0.00 45.44 3.34
2662 3776 6.713903 AGACTCCGACCATTCGTATTCTTATA 59.286 38.462 0.00 0.00 44.28 0.98
2663 3777 6.675987 ACTCCGACCATTCGTATTCTTATAC 58.324 40.000 0.00 0.00 44.28 1.47
2682 3796 8.838365 TCTTATACGTATCTCTGAACTTCCTTC 58.162 37.037 12.24 0.00 0.00 3.46
2688 3802 5.612725 ATCTCTGAACTTCCTTCCATCTC 57.387 43.478 0.00 0.00 0.00 2.75
2700 3814 7.175641 ACTTCCTTCCATCTCACTTATTTGTTG 59.824 37.037 0.00 0.00 0.00 3.33
2701 3815 5.415701 TCCTTCCATCTCACTTATTTGTTGC 59.584 40.000 0.00 0.00 0.00 4.17
2704 3818 6.441093 TCCATCTCACTTATTTGTTGCATC 57.559 37.500 0.00 0.00 0.00 3.91
2714 3828 8.974408 CACTTATTTGTTGCATCATATGATTGG 58.026 33.333 15.74 7.04 31.21 3.16
2731 3845 5.487433 TGATTGGCAGTTCTATCTTTTCGA 58.513 37.500 0.00 0.00 0.00 3.71
2760 3875 8.668510 AATCTTCAATAGAATAACGTGAGCAT 57.331 30.769 0.00 0.00 36.22 3.79
2776 3891 5.121611 CGTGAGCATATTGTGGTTTCAACTA 59.878 40.000 0.00 0.00 39.00 2.24
2795 3910 6.774170 TCAACTACAACTAGGACTGTAAGACA 59.226 38.462 0.00 0.00 37.43 3.41
2797 3912 7.778185 ACTACAACTAGGACTGTAAGACAAT 57.222 36.000 0.00 0.00 37.43 2.71
2857 3972 8.865590 ACGAAAGTAATTGTGTTAAAAAGCAT 57.134 26.923 0.00 0.00 46.88 3.79
2858 3973 8.751335 ACGAAAGTAATTGTGTTAAAAAGCATG 58.249 29.630 0.00 0.00 46.88 4.06
2859 3974 8.751335 CGAAAGTAATTGTGTTAAAAAGCATGT 58.249 29.630 0.00 0.00 0.00 3.21
2889 4004 4.396166 CCTGGTAGCATTCTTGTACTTTGG 59.604 45.833 0.00 0.00 0.00 3.28
2930 4045 8.880244 ACAGCTATATAGTGTATTTCCATGGAA 58.120 33.333 23.63 23.63 0.00 3.53
2931 4046 9.725019 CAGCTATATAGTGTATTTCCATGGAAA 57.275 33.333 35.78 35.78 46.37 3.13
2952 4067 7.126268 TGGAAATCCAGAGTTAGAGATTGATCA 59.874 37.037 0.00 0.00 42.01 2.92
2967 4082 9.014297 AGAGATTGATCAAAGTTTTACCGAAAT 57.986 29.630 13.09 0.00 0.00 2.17
2968 4083 9.626045 GAGATTGATCAAAGTTTTACCGAAATT 57.374 29.630 13.09 0.00 0.00 1.82
2969 4084 9.981114 AGATTGATCAAAGTTTTACCGAAATTT 57.019 25.926 13.09 0.00 0.00 1.82
3021 4136 9.352784 CATGTACATACCTGTTTTGGTAATTTG 57.647 33.333 8.32 0.00 44.65 2.32
3024 4139 7.833285 ACATACCTGTTTTGGTAATTTGTCT 57.167 32.000 0.00 0.00 44.65 3.41
3070 4187 6.642131 TGCACACATTTCTTCTCTTTAATTGC 59.358 34.615 0.00 0.00 0.00 3.56
3196 4327 8.874156 CCTATATATCCTGCTGAAATATGCCTA 58.126 37.037 0.00 0.00 0.00 3.93
3298 4429 7.505585 GGAAATGGTTTATATGATCCCAGTTCA 59.494 37.037 19.59 0.00 46.55 3.18
3332 4463 6.600882 ATTTCATTGATGACCAAGAAGCTT 57.399 33.333 0.00 0.00 38.31 3.74
3399 4530 4.058817 CCTGGTCTGTACTTTGAGTCAAC 58.941 47.826 4.68 0.00 0.00 3.18
3413 4544 1.608590 AGTCAACAAACCATGGCTTCG 59.391 47.619 13.04 3.81 0.00 3.79
3424 4555 2.086869 CATGGCTTCGTGGATCAAGTT 58.913 47.619 0.00 0.00 0.00 2.66
3484 4615 2.527547 CTTGGTTGAACGCGGCCATC 62.528 60.000 12.47 6.79 0.00 3.51
3723 4854 1.806542 CTGATCCAAACAACTGGTCCG 59.193 52.381 0.00 0.00 37.74 4.79
3743 4874 1.065854 GCATACTCAAGGACCTGTGCT 60.066 52.381 0.00 0.00 0.00 4.40
4115 5247 7.921041 ACTCCATTTTCTCCATCTACTGATA 57.079 36.000 0.00 0.00 0.00 2.15
4116 5248 7.961351 ACTCCATTTTCTCCATCTACTGATAG 58.039 38.462 0.00 0.00 0.00 2.08
4118 5250 9.083422 CTCCATTTTCTCCATCTACTGATAGTA 57.917 37.037 0.00 0.00 0.00 1.82
4122 5254 8.840200 TTTTCTCCATCTACTGATAGTACCTT 57.160 34.615 0.00 0.00 0.00 3.50
4125 5257 6.027025 TCCATCTACTGATAGTACCTTGGT 57.973 41.667 0.00 0.00 0.00 3.67
4144 5278 5.471556 TGGTTAGTTCACCGATTTCACTA 57.528 39.130 0.00 0.00 40.09 2.74
4154 5288 7.827819 TCACCGATTTCACTAGTTTAATCAG 57.172 36.000 19.32 13.76 0.00 2.90
4155 5289 6.312918 TCACCGATTTCACTAGTTTAATCAGC 59.687 38.462 19.32 2.64 0.00 4.26
4212 5346 6.065976 TGTATCAGATGAACCAACAATCCT 57.934 37.500 0.00 0.00 0.00 3.24
4213 5347 5.882000 TGTATCAGATGAACCAACAATCCTG 59.118 40.000 0.00 0.00 0.00 3.86
4256 5390 1.139654 TGCCTCATCCTGAAGATTCCG 59.860 52.381 0.00 0.00 30.59 4.30
4267 5401 4.467084 GATTCCGGGGCAGACGCA 62.467 66.667 0.00 0.00 41.24 5.24
4291 5425 2.023181 CATTGGAACGCGATGCCG 59.977 61.111 15.93 0.00 39.16 5.69
4315 5449 3.200483 CATCTTCCAGTGATGCGATTCA 58.800 45.455 0.00 0.00 35.53 2.57
4318 5452 4.264253 TCTTCCAGTGATGCGATTCAAAT 58.736 39.130 0.00 0.00 0.00 2.32
4328 5462 3.680490 TGCGATTCAAATGGGTCTACAA 58.320 40.909 0.00 0.00 0.00 2.41
4365 5499 0.179062 GAGCCACCTGTGAGCTATGG 60.179 60.000 11.52 0.00 37.28 2.74
4374 5508 4.263462 ACCTGTGAGCTATGGAATTGTTGA 60.263 41.667 0.00 0.00 0.00 3.18
4420 5554 2.990479 CCTGGTCCAGGCAGGTAC 59.010 66.667 25.31 0.00 45.13 3.34
4422 5556 1.613630 CTGGTCCAGGCAGGTACCT 60.614 63.158 9.21 9.21 42.30 3.08
4430 5568 2.125512 GCAGGTACCTGTGAGCGG 60.126 66.667 36.31 15.24 45.24 5.52
4518 5663 7.759886 TGTTCTTTGTTCCATTATCTCGAGTAG 59.240 37.037 13.13 0.00 0.00 2.57
4531 5676 2.683867 CTCGAGTAGAATTCCCTCGTGT 59.316 50.000 29.36 5.87 46.10 4.49
4534 5679 3.119602 CGAGTAGAATTCCCTCGTGTTCA 60.120 47.826 25.63 0.00 42.26 3.18
4535 5680 4.425520 GAGTAGAATTCCCTCGTGTTCAG 58.574 47.826 0.65 0.00 0.00 3.02
4546 5691 1.723608 CGTGTTCAGCCAACCTGCAA 61.724 55.000 0.00 0.00 41.50 4.08
4549 5694 0.312102 GTTCAGCCAACCTGCAAGAC 59.688 55.000 0.00 0.00 41.50 3.01
4565 5710 4.927782 ACGCGCTCACTTTGGCCA 62.928 61.111 5.73 0.00 0.00 5.36
4566 5711 3.659092 CGCGCTCACTTTGGCCAA 61.659 61.111 16.05 16.05 0.00 4.52
4584 5729 2.548493 CCAACCTTCAAAATGCCCACTG 60.548 50.000 0.00 0.00 0.00 3.66
4587 5732 2.629617 ACCTTCAAAATGCCCACTGAAG 59.370 45.455 4.11 4.11 42.83 3.02
4590 5735 4.321230 CCTTCAAAATGCCCACTGAAGTAC 60.321 45.833 9.19 0.00 42.03 2.73
4615 5760 3.490348 AGGAGGTTCATTGTTGTCCAAG 58.510 45.455 0.00 0.00 36.25 3.61
4627 5772 3.063704 TCCAAGCATGCGCCAAGG 61.064 61.111 13.01 10.94 39.83 3.61
4630 5775 3.376078 AAGCATGCGCCAAGGTGG 61.376 61.111 13.01 0.00 41.55 4.61
4667 5812 0.463474 GGCATGCTTCTGGAGGAGAC 60.463 60.000 18.92 0.00 0.00 3.36
4715 5860 1.603455 ACATGGGCGGAAAGTGGTG 60.603 57.895 0.00 0.00 0.00 4.17
4729 5874 0.954452 GTGGTGGCCTTGACTCTTTG 59.046 55.000 3.32 0.00 0.00 2.77
4743 5888 1.827969 CTCTTTGTCCGTCTCCTCCAT 59.172 52.381 0.00 0.00 0.00 3.41
4748 5893 1.075970 TCCGTCTCCTCCATCAGGG 60.076 63.158 0.00 0.00 43.67 4.45
4753 5898 0.712979 TCTCCTCCATCAGGGTGTCT 59.287 55.000 0.00 0.00 43.67 3.41
4755 5900 1.222936 CCTCCATCAGGGTGTCTGC 59.777 63.158 0.00 0.00 43.06 4.26
4756 5901 1.222936 CTCCATCAGGGTGTCTGCC 59.777 63.158 0.00 0.00 43.06 4.85
4757 5902 1.229625 TCCATCAGGGTGTCTGCCT 60.230 57.895 0.00 0.00 43.06 4.75
4759 5904 1.681666 CATCAGGGTGTCTGCCTGT 59.318 57.895 0.00 0.00 43.06 4.00
4760 5905 0.675837 CATCAGGGTGTCTGCCTGTG 60.676 60.000 0.00 0.00 43.06 3.66
4761 5906 1.845627 ATCAGGGTGTCTGCCTGTGG 61.846 60.000 0.00 0.00 43.06 4.17
4791 5936 1.392510 GTCGCTTTGGACGGTATTGAC 59.607 52.381 0.00 0.00 0.00 3.18
4801 5946 3.196254 GGACGGTATTGACCCTCTTGTTA 59.804 47.826 0.00 0.00 43.64 2.41
4802 5947 4.179298 GACGGTATTGACCCTCTTGTTAC 58.821 47.826 0.00 0.00 43.64 2.50
4803 5948 3.055602 ACGGTATTGACCCTCTTGTTACC 60.056 47.826 0.00 0.00 43.64 2.85
4804 5949 3.055675 CGGTATTGACCCTCTTGTTACCA 60.056 47.826 0.00 0.00 43.64 3.25
4805 5950 4.514401 GGTATTGACCCTCTTGTTACCAG 58.486 47.826 0.00 0.00 40.23 4.00
4806 5951 3.721087 ATTGACCCTCTTGTTACCAGG 57.279 47.619 0.00 0.00 0.00 4.45
4807 5952 2.112279 TGACCCTCTTGTTACCAGGT 57.888 50.000 0.00 0.00 0.00 4.00
4817 5962 6.428083 TCTTGTTACCAGGTTGAATGAGTA 57.572 37.500 0.00 0.00 0.00 2.59
4820 5965 4.595781 TGTTACCAGGTTGAATGAGTAGGT 59.404 41.667 0.00 0.00 0.00 3.08
4857 6002 3.056313 GATGGCCAAAGTGAGCGCC 62.056 63.158 10.96 0.00 41.99 6.53
4903 6049 4.871513 GTGGTTTCACTCCCATTTTTCTC 58.128 43.478 0.00 0.00 40.58 2.87
4911 6058 5.884232 TCACTCCCATTTTTCTCATCATCAG 59.116 40.000 0.00 0.00 0.00 2.90
5036 6183 4.624015 CCAGCATGTTGTGATGTTCTTTT 58.376 39.130 8.84 0.00 42.62 2.27
5062 6218 7.330946 TGAGGTTTTATATATCTGCGAATTCGG 59.669 37.037 27.78 13.30 40.23 4.30
5072 6228 1.079127 CGAATTCGGAGGCCAGTGT 60.079 57.895 20.16 0.00 35.37 3.55
5077 6233 0.106918 TTCGGAGGCCAGTGTGTTTT 60.107 50.000 5.01 0.00 0.00 2.43
5091 6247 6.857964 CCAGTGTGTTTTGTCTGTTTGATATC 59.142 38.462 0.00 0.00 0.00 1.63
5094 6250 5.529430 TGTGTTTTGTCTGTTTGATATCCGT 59.471 36.000 0.00 0.00 0.00 4.69
5132 6288 1.407437 GCAAGATCCGGGAGTTCACAT 60.407 52.381 0.00 0.00 0.00 3.21
5155 6311 7.127032 ACATTGGAAGGAAGAGAAGATCAGTAT 59.873 37.037 0.00 0.00 0.00 2.12
5157 6313 8.609617 TTGGAAGGAAGAGAAGATCAGTATTA 57.390 34.615 0.00 0.00 0.00 0.98
5166 6322 8.410673 AGAGAAGATCAGTATTATAGCGGAAA 57.589 34.615 0.00 0.00 0.00 3.13
5167 6323 8.301002 AGAGAAGATCAGTATTATAGCGGAAAC 58.699 37.037 0.00 0.00 0.00 2.78
5204 6361 4.931601 TCCGCATCTTTATTATGCTGCTAG 59.068 41.667 0.00 0.00 46.05 3.42
5205 6362 4.093998 CCGCATCTTTATTATGCTGCTAGG 59.906 45.833 0.00 0.00 46.05 3.02
5207 6364 5.063186 CGCATCTTTATTATGCTGCTAGGAG 59.937 44.000 6.94 6.94 46.05 3.69
5208 6365 5.353678 GCATCTTTATTATGCTGCTAGGAGG 59.646 44.000 13.67 0.00 45.05 4.30
5210 6367 6.747414 TCTTTATTATGCTGCTAGGAGGAA 57.253 37.500 9.99 0.00 0.00 3.36
5211 6368 7.321717 TCTTTATTATGCTGCTAGGAGGAAT 57.678 36.000 9.99 2.33 0.00 3.01
5212 6369 8.435931 TCTTTATTATGCTGCTAGGAGGAATA 57.564 34.615 9.99 1.31 0.00 1.75
5239 6523 0.037605 AGATTCGTGTCACGTTCCCC 60.038 55.000 23.82 10.59 43.14 4.81
5293 6577 2.736682 CGGAATCGTGGACGCAACC 61.737 63.158 0.00 0.00 39.60 3.77
5303 6587 1.371558 GACGCAACCACCTCCTCTT 59.628 57.895 0.00 0.00 0.00 2.85
5304 6588 0.670854 GACGCAACCACCTCCTCTTC 60.671 60.000 0.00 0.00 0.00 2.87
5305 6589 1.122019 ACGCAACCACCTCCTCTTCT 61.122 55.000 0.00 0.00 0.00 2.85
5306 6590 0.035458 CGCAACCACCTCCTCTTCTT 59.965 55.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
236 244 0.734889 CAAGCACCGATCACCAATCC 59.265 55.000 0.00 0.00 0.00 3.01
254 262 1.418637 GGAACAGAACCCTACACCACA 59.581 52.381 0.00 0.00 0.00 4.17
279 287 4.937620 AGCTCTCGCAATTTACAGATCAAA 59.062 37.500 0.00 0.00 39.10 2.69
289 297 0.798776 CGGAACAGCTCTCGCAATTT 59.201 50.000 0.00 0.00 39.10 1.82
312 320 6.189036 AGCTACCCTTATTTGGAGGTAATC 57.811 41.667 0.00 0.00 34.54 1.75
319 327 6.382919 ACTACAAAGCTACCCTTATTTGGA 57.617 37.500 0.00 0.00 37.04 3.53
395 407 3.349927 TCTCGATTTCTACGTCTTCCCA 58.650 45.455 0.00 0.00 0.00 4.37
413 425 0.098025 CGCAACCTCTCTCGACTCTC 59.902 60.000 0.00 0.00 0.00 3.20
414 426 0.606944 ACGCAACCTCTCTCGACTCT 60.607 55.000 0.00 0.00 0.00 3.24
415 427 0.455295 CACGCAACCTCTCTCGACTC 60.455 60.000 0.00 0.00 0.00 3.36
416 428 1.581954 CACGCAACCTCTCTCGACT 59.418 57.895 0.00 0.00 0.00 4.18
417 429 1.444553 CCACGCAACCTCTCTCGAC 60.445 63.158 0.00 0.00 0.00 4.20
418 430 1.461091 AACCACGCAACCTCTCTCGA 61.461 55.000 0.00 0.00 0.00 4.04
419 431 0.242825 TAACCACGCAACCTCTCTCG 59.757 55.000 0.00 0.00 0.00 4.04
420 432 2.450609 TTAACCACGCAACCTCTCTC 57.549 50.000 0.00 0.00 0.00 3.20
421 433 2.922740 TTTAACCACGCAACCTCTCT 57.077 45.000 0.00 0.00 0.00 3.10
438 452 6.439599 CGATGACCTAACTACGATCAGATTT 58.560 40.000 0.00 0.00 0.00 2.17
465 485 2.464865 CCAAATCGAACACGGCAAAAA 58.535 42.857 0.00 0.00 0.00 1.94
476 496 3.621461 GCTACTTTCTCCCCCAAATCGAA 60.621 47.826 0.00 0.00 0.00 3.71
552 573 2.224137 CCATAGCTGAAGCATCGGAAGA 60.224 50.000 0.99 0.00 45.16 2.87
652 684 0.796312 CATACCACCAGCAACACGAC 59.204 55.000 0.00 0.00 0.00 4.34
662 694 4.001248 GCAGCAAGCATACCACCA 57.999 55.556 0.00 0.00 44.79 4.17
679 711 5.645497 AGAGAGCAAAGCAACTACCTTATTG 59.355 40.000 0.00 0.00 0.00 1.90
687 719 1.977854 TCCCAGAGAGCAAAGCAACTA 59.022 47.619 0.00 0.00 0.00 2.24
701 733 1.127567 CCCAGGAACACACTCCCAGA 61.128 60.000 0.00 0.00 35.95 3.86
704 736 1.128188 ACTCCCAGGAACACACTCCC 61.128 60.000 0.00 0.00 35.95 4.30
725 757 6.605471 ACAGTCATCTACATGTCCAACTAA 57.395 37.500 0.00 0.00 0.00 2.24
731 763 6.801539 TCAAAAACAGTCATCTACATGTCC 57.198 37.500 0.00 0.00 0.00 4.02
736 768 4.091365 CGCGATCAAAAACAGTCATCTACA 59.909 41.667 0.00 0.00 0.00 2.74
744 776 0.517316 GGCTCGCGATCAAAAACAGT 59.483 50.000 10.36 0.00 0.00 3.55
746 778 0.516877 CAGGCTCGCGATCAAAAACA 59.483 50.000 10.36 0.00 0.00 2.83
753 785 1.875813 CACACTCAGGCTCGCGATC 60.876 63.158 10.36 4.94 0.00 3.69
760 792 3.583086 AGTTTACATACCACACTCAGGCT 59.417 43.478 0.00 0.00 0.00 4.58
774 806 7.284489 ACAACACAGGTTCATAACAGTTTACAT 59.716 33.333 0.00 0.00 34.21 2.29
775 807 6.600032 ACAACACAGGTTCATAACAGTTTACA 59.400 34.615 0.00 0.00 34.21 2.41
776 808 6.910433 CACAACACAGGTTCATAACAGTTTAC 59.090 38.462 0.00 0.00 34.21 2.01
777 809 6.600032 ACACAACACAGGTTCATAACAGTTTA 59.400 34.615 0.00 0.00 34.21 2.01
778 810 5.417580 ACACAACACAGGTTCATAACAGTTT 59.582 36.000 0.00 0.00 34.21 2.66
866 898 7.250569 CGCTTGTGAAAAATACATCAATAGGT 58.749 34.615 0.00 0.00 0.00 3.08
1052 1475 0.327924 ATCGTGGGATGCCAAGTCAA 59.672 50.000 18.07 0.33 0.00 3.18
1378 1801 5.594926 ACCTGAAAAACATGAGCTTGAAAG 58.405 37.500 0.00 0.00 0.00 2.62
1391 1814 5.531634 TGATGAATGCTGAACCTGAAAAAC 58.468 37.500 0.00 0.00 0.00 2.43
1705 2128 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
1706 2129 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
1707 2130 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
1708 2131 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
1709 2132 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
1710 2133 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
1711 2134 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
1712 2135 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
1726 2149 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
1727 2150 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
1728 2151 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
1729 2152 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
1730 2153 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
1731 2154 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
1732 2155 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
1733 2156 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
1734 2157 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
1735 2158 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
1736 2159 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
1737 2160 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
1738 2161 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
1739 2162 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
1740 2163 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
1750 2173 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
1751 2174 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
1752 2175 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
1753 2176 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
1754 2177 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
1755 2178 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
1756 2179 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
1757 2180 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
1758 2181 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
1759 2182 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
1760 2183 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
1761 2184 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
1762 2185 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
1763 2186 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
1764 2187 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
1769 2192 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
1770 2193 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
1771 2194 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
1772 2195 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
1773 2196 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
1774 2197 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
1775 2198 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
1783 2206 2.843912 ATTGAAGGGGAGCCTTGGCG 62.844 60.000 5.95 0.00 0.00 5.69
1784 2207 0.615827 AATTGAAGGGGAGCCTTGGC 60.616 55.000 2.97 2.97 0.00 4.52
1785 2208 1.942776 AAATTGAAGGGGAGCCTTGG 58.057 50.000 0.00 0.00 0.00 3.61
1786 2209 6.129179 TCTATTAAATTGAAGGGGAGCCTTG 58.871 40.000 0.00 0.00 0.00 3.61
1787 2210 6.341408 TCTATTAAATTGAAGGGGAGCCTT 57.659 37.500 0.00 0.00 0.00 4.35
1788 2211 5.994416 TCTATTAAATTGAAGGGGAGCCT 57.006 39.130 0.00 0.00 0.00 4.58
1789 2212 6.517362 GCAATCTATTAAATTGAAGGGGAGCC 60.517 42.308 3.10 0.00 36.43 4.70
1790 2213 6.040842 TGCAATCTATTAAATTGAAGGGGAGC 59.959 38.462 3.10 0.00 36.43 4.70
1791 2214 7.587037 TGCAATCTATTAAATTGAAGGGGAG 57.413 36.000 3.10 0.00 36.43 4.30
1792 2215 9.827198 ATATGCAATCTATTAAATTGAAGGGGA 57.173 29.630 0.00 0.00 36.43 4.81
1793 2216 9.865321 CATATGCAATCTATTAAATTGAAGGGG 57.135 33.333 0.00 0.00 36.43 4.79
1794 2217 9.362539 GCATATGCAATCTATTAAATTGAAGGG 57.637 33.333 22.84 0.00 41.59 3.95
1813 2236 8.616377 CAGATGCAAGATTAAATAGCATATGC 57.384 34.615 20.36 20.36 44.46 3.14
1830 2253 4.591929 TCTGACATCCAAATCAGATGCAA 58.408 39.130 0.00 0.00 45.01 4.08
1934 2357 9.729023 TTTCCAACAGCATAAAACATATATTCG 57.271 29.630 0.00 0.00 0.00 3.34
2006 2429 8.279361 CCTAATATTTAGGAGTGGAGGGAAAAA 58.721 37.037 7.42 0.00 36.85 1.94
2007 2430 7.630127 TCCTAATATTTAGGAGTGGAGGGAAAA 59.370 37.037 11.15 0.00 38.71 2.29
2009 2432 6.699688 TCCTAATATTTAGGAGTGGAGGGAA 58.300 40.000 11.15 0.00 38.71 3.97
2011 2434 6.518537 CGTTCCTAATATTTAGGAGTGGAGGG 60.519 46.154 14.01 0.00 43.85 4.30
2012 2435 6.456501 CGTTCCTAATATTTAGGAGTGGAGG 58.543 44.000 14.01 4.36 43.85 4.30
2013 2436 6.267014 TCCGTTCCTAATATTTAGGAGTGGAG 59.733 42.308 22.19 12.31 43.85 3.86
2014 2437 6.138263 TCCGTTCCTAATATTTAGGAGTGGA 58.862 40.000 22.19 22.19 43.85 4.02
2015 2438 6.415206 TCCGTTCCTAATATTTAGGAGTGG 57.585 41.667 19.75 19.75 43.85 4.00
2016 2439 6.929606 CCTTCCGTTCCTAATATTTAGGAGTG 59.070 42.308 14.01 11.06 43.85 3.51
2017 2440 6.842807 TCCTTCCGTTCCTAATATTTAGGAGT 59.157 38.462 14.01 0.00 43.85 3.85
2018 2441 7.015389 ACTCCTTCCGTTCCTAATATTTAGGAG 59.985 40.741 14.01 0.00 46.57 3.69
2019 2442 6.842807 ACTCCTTCCGTTCCTAATATTTAGGA 59.157 38.462 11.15 11.15 41.64 2.94
2020 2443 7.063934 ACTCCTTCCGTTCCTAATATTTAGG 57.936 40.000 6.94 6.94 36.06 2.69
2021 2444 8.858094 ACTACTCCTTCCGTTCCTAATATTTAG 58.142 37.037 0.00 0.00 0.00 1.85
2022 2445 8.773033 ACTACTCCTTCCGTTCCTAATATTTA 57.227 34.615 0.00 0.00 0.00 1.40
2023 2446 7.672122 ACTACTCCTTCCGTTCCTAATATTT 57.328 36.000 0.00 0.00 0.00 1.40
2024 2447 7.672122 AACTACTCCTTCCGTTCCTAATATT 57.328 36.000 0.00 0.00 0.00 1.28
2025 2448 7.343833 TGAAACTACTCCTTCCGTTCCTAATAT 59.656 37.037 0.00 0.00 0.00 1.28
2026 2449 6.664816 TGAAACTACTCCTTCCGTTCCTAATA 59.335 38.462 0.00 0.00 0.00 0.98
2027 2450 5.482878 TGAAACTACTCCTTCCGTTCCTAAT 59.517 40.000 0.00 0.00 0.00 1.73
2028 2451 4.834496 TGAAACTACTCCTTCCGTTCCTAA 59.166 41.667 0.00 0.00 0.00 2.69
2029 2452 4.410099 TGAAACTACTCCTTCCGTTCCTA 58.590 43.478 0.00 0.00 0.00 2.94
2030 2453 3.236896 TGAAACTACTCCTTCCGTTCCT 58.763 45.455 0.00 0.00 0.00 3.36
2031 2454 3.672767 TGAAACTACTCCTTCCGTTCC 57.327 47.619 0.00 0.00 0.00 3.62
2032 2455 5.963594 ACTATGAAACTACTCCTTCCGTTC 58.036 41.667 0.00 0.00 0.00 3.95
2033 2456 5.997384 ACTATGAAACTACTCCTTCCGTT 57.003 39.130 0.00 0.00 0.00 4.44
2034 2457 5.479375 TGAACTATGAAACTACTCCTTCCGT 59.521 40.000 0.00 0.00 0.00 4.69
2035 2458 5.962433 TGAACTATGAAACTACTCCTTCCG 58.038 41.667 0.00 0.00 0.00 4.30
2076 2499 7.833786 AGTTACGATGTCTGAAACTAATACCA 58.166 34.615 0.00 0.00 0.00 3.25
2162 2585 6.490566 AGTTTGGTACTTTATTAGGTTGCG 57.509 37.500 0.00 0.00 31.29 4.85
2236 2661 1.005924 AGCAAGGGGTTAGTGGGAATG 59.994 52.381 0.00 0.00 0.00 2.67
2267 2692 3.893399 GGACGGGGTTGTGGGGTT 61.893 66.667 0.00 0.00 0.00 4.11
2286 2909 5.455056 AGCAGACGGTAATACTGGATTAG 57.545 43.478 4.09 0.00 30.37 1.73
2302 2925 5.791666 TGATCATCAGATATCCAAGCAGAC 58.208 41.667 0.00 0.00 33.72 3.51
2307 2930 9.886132 TGATATGTTGATCATCAGATATCCAAG 57.114 33.333 18.01 0.00 37.91 3.61
2319 2942 6.093219 GCGAATAAGCCTGATATGTTGATCAT 59.907 38.462 0.00 0.00 35.32 2.45
2346 2970 9.614792 AGAGACGATAATACTAGGCAAAATTTT 57.385 29.630 0.00 0.00 0.00 1.82
2347 2971 9.614792 AAGAGACGATAATACTAGGCAAAATTT 57.385 29.630 0.00 0.00 0.00 1.82
2378 3003 9.965824 GGTCAACTGGTCATATAAAATAAATGG 57.034 33.333 0.00 0.00 0.00 3.16
2439 3065 3.290948 AGGCAGTACCACAAAACTCAA 57.709 42.857 0.00 0.00 43.14 3.02
2440 3066 3.290948 AAGGCAGTACCACAAAACTCA 57.709 42.857 0.00 0.00 43.14 3.41
2576 3683 8.684386 TGGAGTACATCAATTTAACAGACAAA 57.316 30.769 0.00 0.00 0.00 2.83
2579 3686 9.559958 CAAATGGAGTACATCAATTTAACAGAC 57.440 33.333 0.00 0.00 39.19 3.51
2588 3695 9.857656 AGAATGTATCAAATGGAGTACATCAAT 57.142 29.630 0.00 0.00 39.40 2.57
2589 3696 9.112725 CAGAATGTATCAAATGGAGTACATCAA 57.887 33.333 0.00 0.00 39.40 2.57
2592 3699 7.056006 TGCAGAATGTATCAAATGGAGTACAT 58.944 34.615 0.00 0.00 39.36 2.29
2594 3701 6.925610 TGCAGAATGTATCAAATGGAGTAC 57.074 37.500 0.00 0.00 39.31 2.73
2595 3702 8.523915 AAATGCAGAATGTATCAAATGGAGTA 57.476 30.769 0.00 0.00 41.90 2.59
2597 3704 7.223971 CCAAAATGCAGAATGTATCAAATGGAG 59.776 37.037 0.00 0.00 41.90 3.86
2598 3705 7.042950 CCAAAATGCAGAATGTATCAAATGGA 58.957 34.615 0.00 0.00 41.90 3.41
2599 3706 6.819649 ACCAAAATGCAGAATGTATCAAATGG 59.180 34.615 0.00 0.00 41.90 3.16
2600 3707 7.837202 ACCAAAATGCAGAATGTATCAAATG 57.163 32.000 0.00 0.00 41.90 2.32
2601 3708 9.754382 GATACCAAAATGCAGAATGTATCAAAT 57.246 29.630 15.57 0.00 41.90 2.32
2603 3710 8.291191 TGATACCAAAATGCAGAATGTATCAA 57.709 30.769 18.61 8.79 41.90 2.57
2604 3711 7.469043 GCTGATACCAAAATGCAGAATGTATCA 60.469 37.037 19.23 19.23 41.90 2.15
2606 3713 6.321945 TGCTGATACCAAAATGCAGAATGTAT 59.678 34.615 0.00 0.00 45.81 2.29
2607 3714 5.651576 TGCTGATACCAAAATGCAGAATGTA 59.348 36.000 0.00 0.00 39.31 2.29
2608 3715 4.463539 TGCTGATACCAAAATGCAGAATGT 59.536 37.500 0.00 0.00 39.31 2.71
2609 3716 5.001237 TGCTGATACCAAAATGCAGAATG 57.999 39.130 0.00 0.00 40.87 2.67
2623 3736 3.126831 CGGAGTCTGGAAATGCTGATAC 58.873 50.000 0.00 0.00 0.00 2.24
2635 3749 4.814900 CGAATGGTCGGAGTCTGG 57.185 61.111 0.00 0.00 43.81 3.86
2662 3776 4.087182 TGGAAGGAAGTTCAGAGATACGT 58.913 43.478 5.01 0.00 36.82 3.57
2663 3777 4.720649 TGGAAGGAAGTTCAGAGATACG 57.279 45.455 5.01 0.00 36.82 3.06
2664 3778 6.097554 TGAGATGGAAGGAAGTTCAGAGATAC 59.902 42.308 5.01 0.00 36.82 2.24
2665 3779 6.097554 GTGAGATGGAAGGAAGTTCAGAGATA 59.902 42.308 5.01 0.00 36.82 1.98
2678 3792 5.183713 TGCAACAAATAAGTGAGATGGAAGG 59.816 40.000 0.00 0.00 0.00 3.46
2682 3796 6.198650 TGATGCAACAAATAAGTGAGATGG 57.801 37.500 0.00 0.00 0.00 3.51
2688 3802 8.974408 CCAATCATATGATGCAACAAATAAGTG 58.026 33.333 18.85 8.30 34.49 3.16
2700 3814 6.598457 AGATAGAACTGCCAATCATATGATGC 59.402 38.462 18.85 17.86 34.49 3.91
2701 3815 8.563123 AAGATAGAACTGCCAATCATATGATG 57.437 34.615 18.85 12.31 34.49 3.07
2704 3818 8.013947 CGAAAAGATAGAACTGCCAATCATATG 58.986 37.037 0.00 0.00 0.00 1.78
2714 3828 8.359060 AGATTATGTCGAAAAGATAGAACTGC 57.641 34.615 0.00 0.00 0.00 4.40
2748 3862 5.645929 TGAAACCACAATATGCTCACGTTAT 59.354 36.000 0.00 0.00 0.00 1.89
2752 3866 4.083324 AGTTGAAACCACAATATGCTCACG 60.083 41.667 0.00 0.00 32.36 4.35
2760 3875 7.658575 GTCCTAGTTGTAGTTGAAACCACAATA 59.341 37.037 9.77 4.47 41.26 1.90
2776 3891 7.097834 GCTTATTGTCTTACAGTCCTAGTTGT 58.902 38.462 0.00 0.00 0.00 3.32
2826 3941 8.716619 TTTAACACAATTACTTTCGTGCATAC 57.283 30.769 0.00 0.00 32.53 2.39
2844 3959 4.506288 GGTGGACAACATGCTTTTTAACAC 59.494 41.667 0.00 0.00 0.00 3.32
2857 3972 1.064003 ATGCTACCAGGTGGACAACA 58.936 50.000 7.25 0.00 38.94 3.33
2858 3973 2.084546 GAATGCTACCAGGTGGACAAC 58.915 52.381 7.25 0.76 38.94 3.32
2859 3974 1.985159 AGAATGCTACCAGGTGGACAA 59.015 47.619 7.25 0.00 38.94 3.18
2930 4045 8.547173 ACTTTGATCAATCTCTAACTCTGGATT 58.453 33.333 9.40 0.00 0.00 3.01
2931 4046 8.088463 ACTTTGATCAATCTCTAACTCTGGAT 57.912 34.615 9.40 0.00 0.00 3.41
2939 4054 9.496873 TTCGGTAAAACTTTGATCAATCTCTAA 57.503 29.630 9.40 0.00 0.00 2.10
2968 4083 9.757227 CAACCAAGACAAATACCTATTCAAAAA 57.243 29.630 0.00 0.00 0.00 1.94
2969 4084 7.870445 GCAACCAAGACAAATACCTATTCAAAA 59.130 33.333 0.00 0.00 0.00 2.44
2991 4106 5.160641 CCAAAACAGGTATGTACATGCAAC 58.839 41.667 23.01 11.71 41.29 4.17
3037 4154 7.337167 AGAGAAGAAATGTGTGCATAAGAGAT 58.663 34.615 0.00 0.00 34.39 2.75
3046 4163 6.089954 GGCAATTAAAGAGAAGAAATGTGTGC 59.910 38.462 0.00 0.00 0.00 4.57
3049 4166 7.373493 AGTGGCAATTAAAGAGAAGAAATGTG 58.627 34.615 0.00 0.00 0.00 3.21
3050 4167 7.530426 AGTGGCAATTAAAGAGAAGAAATGT 57.470 32.000 0.00 0.00 0.00 2.71
3070 4187 5.063204 TGAACATGTTCTGAAGGTTAGTGG 58.937 41.667 32.57 0.00 40.14 4.00
3298 4429 0.525761 CAATGAAATCGCCCCACGTT 59.474 50.000 0.00 0.00 44.19 3.99
3332 4463 1.748879 GCTGGGGCGCATAAGACAA 60.749 57.895 10.83 0.00 0.00 3.18
3399 4530 1.133025 GATCCACGAAGCCATGGTTTG 59.867 52.381 19.60 14.30 37.27 2.93
3413 4544 4.072131 TCTGCTTGGTTAACTTGATCCAC 58.928 43.478 5.42 0.00 0.00 4.02
3424 4555 5.680619 TCTTTCAGAACTTCTGCTTGGTTA 58.319 37.500 13.24 0.00 43.95 2.85
3484 4615 4.513692 TCAACTGAGGAAAACGTACCATTG 59.486 41.667 8.62 7.35 0.00 2.82
3723 4854 1.065854 AGCACAGGTCCTTGAGTATGC 60.066 52.381 0.00 0.00 0.00 3.14
3743 4874 4.892965 AAGTTGGCACCCTGCGCA 62.893 61.111 10.98 10.98 46.21 6.09
3980 5111 1.079336 GTACAGGTTGGGGTCTCGC 60.079 63.158 0.00 0.00 0.00 5.03
3986 5117 0.673644 CAAGAGCGTACAGGTTGGGG 60.674 60.000 0.00 0.00 0.00 4.96
4115 5247 3.233507 TCGGTGAACTAACCAAGGTACT 58.766 45.455 0.00 0.00 40.53 2.73
4116 5248 3.665745 TCGGTGAACTAACCAAGGTAC 57.334 47.619 0.00 0.00 40.53 3.34
4118 5250 3.782656 AATCGGTGAACTAACCAAGGT 57.217 42.857 0.00 0.00 40.53 3.50
4122 5254 4.345859 AGTGAAATCGGTGAACTAACCA 57.654 40.909 0.00 0.00 40.53 3.67
4125 5257 9.715121 ATTAAACTAGTGAAATCGGTGAACTAA 57.285 29.630 0.00 0.00 0.00 2.24
4154 5288 1.001048 TGCTGCAAGTGAAATCAGTGC 60.001 47.619 0.00 10.59 38.12 4.40
4155 5289 2.921069 GCTGCTGCAAGTGAAATCAGTG 60.921 50.000 11.11 0.00 39.41 3.66
4212 5346 6.817765 AGAGAAATCCTTTTTCGTATTGCA 57.182 33.333 0.00 0.00 33.86 4.08
4213 5347 6.033937 GCAAGAGAAATCCTTTTTCGTATTGC 59.966 38.462 15.30 15.30 38.02 3.56
4256 5390 2.514824 GGAGAATGCGTCTGCCCC 60.515 66.667 0.00 0.00 38.74 5.80
4267 5401 0.251916 TCGCGTTCCAATGGGAGAAT 59.748 50.000 5.77 0.00 46.01 2.40
4291 5425 1.442526 CGCATCACTGGAAGATGGGC 61.443 60.000 7.19 0.00 45.32 5.36
4315 5449 3.091545 CTGCACCATTGTAGACCCATTT 58.908 45.455 0.00 0.00 37.65 2.32
4318 5452 0.327924 CCTGCACCATTGTAGACCCA 59.672 55.000 0.00 0.00 37.65 4.51
4328 5462 2.987125 GGTCGGTACCTGCACCAT 59.013 61.111 10.90 0.00 43.08 3.55
4365 5499 6.476380 TCAGTCAAATGCAAGTTCAACAATTC 59.524 34.615 0.00 0.00 0.00 2.17
4374 5508 2.541588 GCGTGTCAGTCAAATGCAAGTT 60.542 45.455 0.00 0.00 0.00 2.66
4420 5554 3.335356 AAGGGATGCCGCTCACAGG 62.335 63.158 0.00 0.00 34.16 4.00
4422 5556 2.268920 GAAGGGATGCCGCTCACA 59.731 61.111 0.00 0.00 34.16 3.58
4430 5568 1.084370 CGTCTGGTTCGAAGGGATGC 61.084 60.000 0.00 0.00 0.00 3.91
4518 5663 1.087501 GGCTGAACACGAGGGAATTC 58.912 55.000 0.00 0.00 0.00 2.17
4531 5676 1.165907 CGTCTTGCAGGTTGGCTGAA 61.166 55.000 0.00 0.00 34.04 3.02
4534 5679 2.980233 GCGTCTTGCAGGTTGGCT 60.980 61.111 0.00 0.00 45.45 4.75
4535 5680 4.389576 CGCGTCTTGCAGGTTGGC 62.390 66.667 0.00 0.00 46.97 4.52
4546 5691 3.044305 GCCAAAGTGAGCGCGTCT 61.044 61.111 8.43 5.17 0.00 4.18
4549 5694 3.659092 TTGGCCAAAGTGAGCGCG 61.659 61.111 17.98 0.00 0.00 6.86
4565 5710 2.676748 TCAGTGGGCATTTTGAAGGTT 58.323 42.857 0.00 0.00 0.00 3.50
4566 5711 2.380064 TCAGTGGGCATTTTGAAGGT 57.620 45.000 0.00 0.00 0.00 3.50
4584 5729 5.476614 ACAATGAACCTCCTTACGTACTTC 58.523 41.667 0.00 0.00 0.00 3.01
4587 5732 4.992951 ACAACAATGAACCTCCTTACGTAC 59.007 41.667 0.00 0.00 0.00 3.67
4590 5735 3.435671 GGACAACAATGAACCTCCTTACG 59.564 47.826 0.00 0.00 0.00 3.18
4595 5740 2.029918 GCTTGGACAACAATGAACCTCC 60.030 50.000 0.00 0.00 38.65 4.30
4630 5775 2.993264 AGGTGGGCAGCAATGTGC 60.993 61.111 0.00 0.00 45.46 4.57
4653 5798 1.671901 CCTCCGTCTCCTCCAGAAGC 61.672 65.000 0.00 0.00 30.72 3.86
4657 5802 1.040339 CCTTCCTCCGTCTCCTCCAG 61.040 65.000 0.00 0.00 0.00 3.86
4667 5812 0.395862 TAGGTGCTCTCCTTCCTCCG 60.396 60.000 0.00 0.00 38.86 4.63
4729 5874 1.395826 CCCTGATGGAGGAGACGGAC 61.396 65.000 0.00 0.00 46.33 4.79
4755 5900 2.912025 ACGCCTTTTGCCCACAGG 60.912 61.111 0.00 0.00 36.24 4.00
4756 5901 2.644992 GACGCCTTTTGCCCACAG 59.355 61.111 0.00 0.00 36.24 3.66
4757 5902 3.283684 CGACGCCTTTTGCCCACA 61.284 61.111 0.00 0.00 36.24 4.17
4759 5904 4.947147 AGCGACGCCTTTTGCCCA 62.947 61.111 17.79 0.00 36.24 5.36
4760 5905 3.207547 AAAGCGACGCCTTTTGCCC 62.208 57.895 17.79 0.00 36.24 5.36
4761 5906 2.016165 CAAAGCGACGCCTTTTGCC 61.016 57.895 17.79 0.00 32.97 4.52
4801 5946 3.244911 CCAACCTACTCATTCAACCTGGT 60.245 47.826 0.00 0.00 0.00 4.00
4802 5947 3.009033 TCCAACCTACTCATTCAACCTGG 59.991 47.826 0.00 0.00 0.00 4.45
4803 5948 4.003648 GTCCAACCTACTCATTCAACCTG 58.996 47.826 0.00 0.00 0.00 4.00
4804 5949 3.650942 TGTCCAACCTACTCATTCAACCT 59.349 43.478 0.00 0.00 0.00 3.50
4805 5950 4.015872 TGTCCAACCTACTCATTCAACC 57.984 45.455 0.00 0.00 0.00 3.77
4806 5951 6.575162 AAATGTCCAACCTACTCATTCAAC 57.425 37.500 0.00 0.00 0.00 3.18
4807 5952 6.775142 TGAAAATGTCCAACCTACTCATTCAA 59.225 34.615 0.00 0.00 0.00 2.69
4817 5962 2.035832 CGGCTTTGAAAATGTCCAACCT 59.964 45.455 0.00 0.00 0.00 3.50
4820 5965 2.311463 TCCGGCTTTGAAAATGTCCAA 58.689 42.857 0.00 0.00 0.00 3.53
4857 6002 2.125952 TCAGTCGACATGCGCCAG 60.126 61.111 19.50 0.00 40.61 4.85
4903 6049 3.087031 AGGTGCCAAAGTTCTGATGATG 58.913 45.455 0.00 0.00 0.00 3.07
4911 6058 1.566018 CGACGGAGGTGCCAAAGTTC 61.566 60.000 0.00 0.00 35.94 3.01
5036 6183 7.330946 CCGAATTCGCAGATATATAAAACCTCA 59.669 37.037 22.36 0.00 38.18 3.86
5058 6214 0.106918 AAAACACACTGGCCTCCGAA 60.107 50.000 3.32 0.00 0.00 4.30
5062 6218 1.334869 CAGACAAAACACACTGGCCTC 59.665 52.381 3.32 0.00 0.00 4.70
5065 6221 2.923020 CAAACAGACAAAACACACTGGC 59.077 45.455 0.00 0.00 35.08 4.85
5072 6228 5.760743 TCACGGATATCAAACAGACAAAACA 59.239 36.000 4.83 0.00 0.00 2.83
5077 6233 4.332543 GCATTCACGGATATCAAACAGACA 59.667 41.667 4.83 0.00 0.00 3.41
5113 6269 2.679837 CAATGTGAACTCCCGGATCTTG 59.320 50.000 0.73 0.00 0.00 3.02
5132 6288 7.502060 AATACTGATCTTCTCTTCCTTCCAA 57.498 36.000 0.00 0.00 0.00 3.53
5166 6322 2.581354 GGATCTCCTGCTGTGCGT 59.419 61.111 0.00 0.00 0.00 5.24
5167 6323 2.584418 CGGATCTCCTGCTGTGCG 60.584 66.667 0.00 0.00 0.00 5.34
5176 6332 5.476752 GCATAATAAAGATGCGGATCTCC 57.523 43.478 20.43 0.00 40.29 3.71
5204 6361 4.341520 ACGAATCTACCACTGTATTCCTCC 59.658 45.833 0.00 0.00 0.00 4.30
5205 6362 5.163540 ACACGAATCTACCACTGTATTCCTC 60.164 44.000 0.00 0.00 0.00 3.71
5207 6364 5.007385 ACACGAATCTACCACTGTATTCC 57.993 43.478 0.00 0.00 0.00 3.01
5208 6365 5.515626 GTGACACGAATCTACCACTGTATTC 59.484 44.000 0.00 0.00 0.00 1.75
5210 6367 4.438336 CGTGACACGAATCTACCACTGTAT 60.438 45.833 23.39 0.00 46.05 2.29
5211 6368 3.120095 CGTGACACGAATCTACCACTGTA 60.120 47.826 23.39 0.00 46.05 2.74
5212 6369 2.351447 CGTGACACGAATCTACCACTGT 60.351 50.000 23.39 0.00 46.05 3.55
5252 6536 0.523072 CAAGCCAGCAATAGCACGTT 59.477 50.000 0.00 0.00 45.49 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.