Multiple sequence alignment - TraesCS1A01G307900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G307900 chr1A 100.000 4604 0 0 1 4604 499442429 499437826 0.000000e+00 8503
1 TraesCS1A01G307900 chr1A 81.237 485 73 9 2851 3320 499439465 499438984 4.350000e-100 375
2 TraesCS1A01G307900 chr1A 81.237 485 73 9 2965 3446 499439579 499439110 4.350000e-100 375
3 TraesCS1A01G307900 chr1D 89.554 3743 292 43 765 4457 403722962 403719269 0.000000e+00 4654
4 TraesCS1A01G307900 chr1D 84.919 557 27 17 1 533 403723797 403723274 1.140000e-140 510
5 TraesCS1A01G307900 chr1D 82.680 485 66 8 2851 3320 403720786 403720305 9.220000e-112 414
6 TraesCS1A01G307900 chr1D 82.062 485 69 8 2965 3446 403720900 403720431 9.280000e-107 398
7 TraesCS1A01G307900 chr1D 90.110 91 8 1 668 757 403723174 403723084 2.910000e-22 117
8 TraesCS1A01G307900 chr1D 82.203 118 21 0 2852 2969 403720425 403720308 8.150000e-18 102
9 TraesCS1A01G307900 chr1B 91.454 2820 211 14 765 3579 543084445 543081651 0.000000e+00 3845
10 TraesCS1A01G307900 chr1B 82.979 799 59 32 1 757 543085330 543084567 0.000000e+00 651
11 TraesCS1A01G307900 chr1B 92.405 316 17 7 3606 3916 543081656 543081343 1.180000e-120 444
12 TraesCS1A01G307900 chr1B 82.062 485 69 9 2851 3320 543082268 543081787 9.280000e-107 398
13 TraesCS1A01G307900 chr1B 81.781 483 74 6 2965 3446 543082382 543081913 4.320000e-105 392


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G307900 chr1A 499437826 499442429 4603 True 3084.333333 8503 87.491333 1 4604 3 chr1A.!!$R1 4603
1 TraesCS1A01G307900 chr1D 403719269 403723797 4528 True 1032.500000 4654 85.254667 1 4457 6 chr1D.!!$R1 4456
2 TraesCS1A01G307900 chr1B 543081343 543085330 3987 True 1146.000000 3845 86.136200 1 3916 5 chr1B.!!$R1 3915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 659 0.039165 GCCAGCCTTTTCTTGTTCGG 60.039 55.0 0.0 0.0 0.00 4.30 F
1418 1591 0.112218 TTTAGCAAGGCAAGGGCTGA 59.888 50.0 0.0 0.0 38.81 4.26 F
1661 1834 0.323178 AGCCTGTTTGAGGATGCTGG 60.323 55.0 0.0 0.0 46.33 4.85 F
2060 2233 0.379669 GTTGCTCCAATGCTCGATGG 59.620 55.0 0.0 0.0 38.09 3.51 F
2538 2711 0.392461 TCCGTATGCAAGTTCAGCCC 60.392 55.0 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 2213 0.027194 CATCGAGCATTGGAGCAACG 59.973 55.000 0.00 0.00 37.69 4.10 R
2236 2409 0.181114 TCCATTTGAGGATCCAGGCG 59.819 55.000 15.82 0.00 31.23 5.52 R
2763 2936 0.889186 GTCTCTCTTGGCCGCCAAAA 60.889 55.000 24.83 12.29 43.44 2.44 R
3282 3455 1.004918 GTCGGTGTGTTCCTCCTGG 60.005 63.158 0.00 0.00 0.00 4.45 R
4218 4421 0.033011 AGGTAGTCTGGATCCACGCT 60.033 55.000 11.44 13.91 0.00 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.157120 CCGTCCATGGGTCCGTCC 62.157 72.222 13.02 0.00 0.00 4.79
181 183 1.074248 AAACACGCGGGAAAGGGAT 59.926 52.632 19.19 0.00 0.00 3.85
182 184 0.958876 AAACACGCGGGAAAGGGATC 60.959 55.000 19.19 0.00 0.00 3.36
290 316 4.462280 CCGGGGACAACTACCGCC 62.462 72.222 0.00 0.00 45.93 6.13
291 317 4.462280 CGGGGACAACTACCGCCC 62.462 72.222 0.00 0.00 41.23 6.13
293 319 4.462280 GGGACAACTACCGCCCCG 62.462 72.222 0.00 0.00 34.39 5.73
305 336 4.832608 GCCCCGCGGAAGTACCAG 62.833 72.222 30.73 6.78 38.90 4.00
434 465 1.283793 CGCCACCTGCTTCACTTTG 59.716 57.895 0.00 0.00 38.05 2.77
435 466 1.165907 CGCCACCTGCTTCACTTTGA 61.166 55.000 0.00 0.00 38.05 2.69
436 467 0.595095 GCCACCTGCTTCACTTTGAG 59.405 55.000 0.00 0.00 36.87 3.02
437 468 1.815408 GCCACCTGCTTCACTTTGAGA 60.815 52.381 0.00 0.00 36.87 3.27
438 469 1.876156 CCACCTGCTTCACTTTGAGAC 59.124 52.381 0.00 0.00 0.00 3.36
439 470 2.486191 CCACCTGCTTCACTTTGAGACT 60.486 50.000 0.00 0.00 0.00 3.24
440 471 2.805099 CACCTGCTTCACTTTGAGACTC 59.195 50.000 0.00 0.00 0.00 3.36
441 472 2.224402 ACCTGCTTCACTTTGAGACTCC 60.224 50.000 0.00 0.00 0.00 3.85
442 473 2.038295 CCTGCTTCACTTTGAGACTCCT 59.962 50.000 0.00 0.00 0.00 3.69
443 474 3.495806 CCTGCTTCACTTTGAGACTCCTT 60.496 47.826 0.00 0.00 0.00 3.36
444 475 3.733337 TGCTTCACTTTGAGACTCCTTC 58.267 45.455 0.00 0.00 0.00 3.46
445 476 3.134623 TGCTTCACTTTGAGACTCCTTCA 59.865 43.478 0.00 0.00 0.00 3.02
446 477 3.496507 GCTTCACTTTGAGACTCCTTCAC 59.503 47.826 0.00 0.00 0.00 3.18
447 478 4.742138 GCTTCACTTTGAGACTCCTTCACT 60.742 45.833 0.00 0.00 0.00 3.41
448 479 5.359194 TTCACTTTGAGACTCCTTCACTT 57.641 39.130 0.00 0.00 0.00 3.16
449 480 5.359194 TCACTTTGAGACTCCTTCACTTT 57.641 39.130 0.00 0.00 0.00 2.66
470 501 2.237143 TCTTGAGCTCGGATCACCATTT 59.763 45.455 9.64 0.00 35.59 2.32
501 532 3.146847 TCGCTCCCCTTTTTCTTTCTTC 58.853 45.455 0.00 0.00 0.00 2.87
520 551 1.666209 CGGGATCACCATTGCCAACC 61.666 60.000 0.00 0.00 40.22 3.77
524 555 1.597797 ATCACCATTGCCAACCGCTG 61.598 55.000 0.00 0.00 38.78 5.18
528 559 2.598394 ATTGCCAACCGCTGCACT 60.598 55.556 0.00 0.00 37.18 4.40
551 582 4.996434 CCTGCCGGCGATCCCATC 62.996 72.222 23.90 0.00 0.00 3.51
553 584 4.240103 TGCCGGCGATCCCATCTG 62.240 66.667 23.90 0.00 0.00 2.90
556 587 1.595382 CCGGCGATCCCATCTGAAC 60.595 63.158 9.30 0.00 0.00 3.18
558 589 0.179073 CGGCGATCCCATCTGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
559 590 1.587547 GGCGATCCCATCTGAACTTC 58.412 55.000 0.00 0.00 0.00 3.01
560 591 1.587547 GCGATCCCATCTGAACTTCC 58.412 55.000 0.00 0.00 0.00 3.46
562 593 1.486310 CGATCCCATCTGAACTTCCCA 59.514 52.381 0.00 0.00 0.00 4.37
563 594 2.092968 CGATCCCATCTGAACTTCCCAA 60.093 50.000 0.00 0.00 0.00 4.12
565 596 2.631384 TCCCATCTGAACTTCCCAAGA 58.369 47.619 0.00 0.00 0.00 3.02
569 607 1.434188 TCTGAACTTCCCAAGAGGCA 58.566 50.000 0.00 0.00 34.51 4.75
575 613 1.709147 CTTCCCAAGAGGCAATCGCG 61.709 60.000 0.00 0.00 39.92 5.87
581 619 2.279784 GAGGCAATCGCGCTAGCT 60.280 61.111 13.93 0.00 42.32 3.32
585 623 2.325857 CAATCGCGCTAGCTTGCC 59.674 61.111 14.61 6.57 42.32 4.52
601 658 0.667993 TGCCAGCCTTTTCTTGTTCG 59.332 50.000 0.00 0.00 0.00 3.95
602 659 0.039165 GCCAGCCTTTTCTTGTTCGG 60.039 55.000 0.00 0.00 0.00 4.30
603 660 1.318576 CCAGCCTTTTCTTGTTCGGT 58.681 50.000 0.00 0.00 0.00 4.69
604 661 1.681264 CCAGCCTTTTCTTGTTCGGTT 59.319 47.619 0.00 0.00 0.00 4.44
605 662 2.543653 CCAGCCTTTTCTTGTTCGGTTG 60.544 50.000 0.00 0.00 0.00 3.77
607 664 2.758423 AGCCTTTTCTTGTTCGGTTGTT 59.242 40.909 0.00 0.00 0.00 2.83
608 665 3.113322 GCCTTTTCTTGTTCGGTTGTTC 58.887 45.455 0.00 0.00 0.00 3.18
609 666 3.702330 CCTTTTCTTGTTCGGTTGTTCC 58.298 45.455 0.00 0.00 0.00 3.62
610 667 3.380320 CCTTTTCTTGTTCGGTTGTTCCT 59.620 43.478 0.00 0.00 0.00 3.36
611 668 4.351192 CTTTTCTTGTTCGGTTGTTCCTG 58.649 43.478 0.00 0.00 0.00 3.86
612 669 1.961793 TCTTGTTCGGTTGTTCCTGG 58.038 50.000 0.00 0.00 0.00 4.45
613 670 0.310854 CTTGTTCGGTTGTTCCTGGC 59.689 55.000 0.00 0.00 0.00 4.85
621 678 1.115326 GTTGTTCCTGGCCTGCCTTT 61.115 55.000 9.97 0.00 36.94 3.11
626 683 1.210204 TCCTGGCCTGCCTTTGATCT 61.210 55.000 9.97 0.00 36.94 2.75
633 690 0.731417 CTGCCTTTGATCTTCTGCCG 59.269 55.000 0.00 0.00 0.00 5.69
640 697 2.821688 GATCTTCTGCCGCTGCTGC 61.822 63.158 9.23 9.23 38.71 5.25
746 803 4.389077 CGCTTAAAGGTACCAACTTCTGAG 59.611 45.833 15.94 2.09 0.00 3.35
750 807 1.625818 AGGTACCAACTTCTGAGGCTG 59.374 52.381 15.94 0.00 0.00 4.85
757 814 1.227497 CTTCTGAGGCTGCCGATCC 60.227 63.158 13.96 4.82 0.00 3.36
759 816 1.964608 TTCTGAGGCTGCCGATCCAG 61.965 60.000 13.96 17.65 35.93 3.86
762 819 0.760567 TGAGGCTGCCGATCCAGTAT 60.761 55.000 13.96 0.00 35.28 2.12
770 941 4.153117 GCTGCCGATCCAGTATTAATTCAG 59.847 45.833 0.00 0.00 35.28 3.02
774 945 4.386049 CCGATCCAGTATTAATTCAGCGTC 59.614 45.833 0.00 0.00 0.00 5.19
783 954 5.854010 ATTAATTCAGCGTCTCCAGAGTA 57.146 39.130 0.00 0.00 0.00 2.59
787 958 2.723273 TCAGCGTCTCCAGAGTAATCA 58.277 47.619 0.00 0.00 0.00 2.57
797 968 7.044181 GTCTCCAGAGTAATCATGTGAATTGA 58.956 38.462 0.00 0.00 0.00 2.57
800 971 8.812513 TCCAGAGTAATCATGTGAATTGAATT 57.187 30.769 0.00 0.00 0.00 2.17
808 979 8.456904 AATCATGTGAATTGAATTCTTGAACG 57.543 30.769 17.76 3.63 39.96 3.95
810 981 6.857451 TCATGTGAATTGAATTCTTGAACGTG 59.143 34.615 17.76 16.84 39.96 4.49
813 985 5.340667 GTGAATTGAATTCTTGAACGTGCTC 59.659 40.000 17.76 0.00 39.96 4.26
822 994 1.234821 TGAACGTGCTCCCACATTTC 58.765 50.000 0.00 0.00 42.17 2.17
824 996 2.037902 TGAACGTGCTCCCACATTTCTA 59.962 45.455 0.00 0.00 42.17 2.10
826 998 1.623811 ACGTGCTCCCACATTTCTAGT 59.376 47.619 0.00 0.00 42.17 2.57
827 999 2.038557 ACGTGCTCCCACATTTCTAGTT 59.961 45.455 0.00 0.00 42.17 2.24
828 1000 3.074412 CGTGCTCCCACATTTCTAGTTT 58.926 45.455 0.00 0.00 42.17 2.66
834 1006 5.582665 GCTCCCACATTTCTAGTTTAGTCTG 59.417 44.000 0.00 0.00 0.00 3.51
902 1075 6.870971 TTAGGATCGTAACACAAGCTTTTT 57.129 33.333 0.00 0.00 0.00 1.94
921 1094 7.505923 AGCTTTTTGTAGAATTAAACCTCTGGT 59.494 33.333 0.00 0.00 37.65 4.00
933 1106 7.843490 TTAAACCTCTGGTAGAATTCATTCG 57.157 36.000 8.44 0.00 37.07 3.34
951 1124 2.554142 TCGATGAGCTAATGTTGCCAG 58.446 47.619 0.00 0.00 0.00 4.85
1008 1181 2.044946 GGAGTGGCCATGGGTGTC 60.045 66.667 9.72 0.00 36.34 3.67
1066 1239 9.507329 AAGTTTTGAAGTGCTCTATCAGAATAA 57.493 29.630 0.00 0.00 0.00 1.40
1159 1332 1.448013 CCGGGTCTCTTCGCTTTCC 60.448 63.158 0.00 0.00 0.00 3.13
1185 1358 5.970640 TCTCTCCACTTCCCCTGTAATTATT 59.029 40.000 0.00 0.00 0.00 1.40
1273 1446 2.753452 GACCGGAAGACTGACACAGATA 59.247 50.000 9.46 0.00 35.18 1.98
1286 1459 2.499289 ACACAGATAGTTCAGCTCCCAG 59.501 50.000 0.00 0.00 0.00 4.45
1319 1492 7.983307 TGTTTTTCCAGAAATGTTCATTTTGG 58.017 30.769 20.28 20.28 0.00 3.28
1326 1499 5.929992 CAGAAATGTTCATTTTGGAGCACAT 59.070 36.000 11.30 0.00 30.63 3.21
1338 1511 2.041485 TGGAGCACATCAGGGATTTTCA 59.959 45.455 0.00 0.00 0.00 2.69
1358 1531 1.277557 AGTGCCTGCAGTTAAGGAGAG 59.722 52.381 13.81 0.00 36.91 3.20
1361 1534 1.731720 CCTGCAGTTAAGGAGAGCAC 58.268 55.000 13.81 0.00 36.91 4.40
1371 1544 0.475906 AGGAGAGCACAGTTGGCTTT 59.524 50.000 0.00 0.00 42.78 3.51
1384 1557 5.104735 ACAGTTGGCTTTAAATGTTGGGAAA 60.105 36.000 0.00 0.00 35.58 3.13
1402 1575 6.413783 GGGAAATCAGAAACCCAAGTTTTA 57.586 37.500 0.00 0.00 46.25 1.52
1408 1581 4.340950 TCAGAAACCCAAGTTTTAGCAAGG 59.659 41.667 0.00 0.00 46.25 3.61
1409 1582 3.069586 AGAAACCCAAGTTTTAGCAAGGC 59.930 43.478 0.00 0.00 46.25 4.35
1410 1583 2.080654 ACCCAAGTTTTAGCAAGGCA 57.919 45.000 0.00 0.00 0.00 4.75
1411 1584 2.393646 ACCCAAGTTTTAGCAAGGCAA 58.606 42.857 0.00 0.00 0.00 4.52
1412 1585 2.365293 ACCCAAGTTTTAGCAAGGCAAG 59.635 45.455 0.00 0.00 0.00 4.01
1413 1586 2.289010 CCCAAGTTTTAGCAAGGCAAGG 60.289 50.000 0.00 0.00 0.00 3.61
1414 1587 2.289010 CCAAGTTTTAGCAAGGCAAGGG 60.289 50.000 0.00 0.00 0.00 3.95
1415 1588 0.969149 AGTTTTAGCAAGGCAAGGGC 59.031 50.000 0.00 0.00 40.13 5.19
1416 1589 0.969149 GTTTTAGCAAGGCAAGGGCT 59.031 50.000 0.00 0.00 41.24 5.19
1417 1590 0.968405 TTTTAGCAAGGCAAGGGCTG 59.032 50.000 0.00 0.00 38.81 4.85
1418 1591 0.112218 TTTAGCAAGGCAAGGGCTGA 59.888 50.000 0.00 0.00 38.81 4.26
1419 1592 0.609131 TTAGCAAGGCAAGGGCTGAC 60.609 55.000 0.00 0.00 38.81 3.51
1420 1593 1.778017 TAGCAAGGCAAGGGCTGACA 61.778 55.000 0.00 0.00 38.81 3.58
1421 1594 2.202395 GCAAGGCAAGGGCTGACAA 61.202 57.895 0.00 0.00 38.81 3.18
1422 1595 1.962144 CAAGGCAAGGGCTGACAAG 59.038 57.895 0.00 0.00 38.81 3.16
1460 1633 6.433847 TGATACTGTTCCTCTTTTGAAGGA 57.566 37.500 0.00 0.00 0.00 3.36
1493 1666 6.477053 TCAAGGAGATGAGAGAGTTTATGG 57.523 41.667 0.00 0.00 0.00 2.74
1507 1680 7.782168 AGAGAGTTTATGGACATGATAGACTCA 59.218 37.037 18.21 2.07 38.84 3.41
1512 1685 7.660030 TTATGGACATGATAGACTCACTGAA 57.340 36.000 0.00 0.00 36.48 3.02
1513 1686 5.330455 TGGACATGATAGACTCACTGAAC 57.670 43.478 0.00 0.00 36.48 3.18
1515 1688 5.126222 TGGACATGATAGACTCACTGAACTC 59.874 44.000 0.00 0.00 36.48 3.01
1519 1692 5.553290 TGATAGACTCACTGAACTCTTCG 57.447 43.478 0.00 0.00 0.00 3.79
1528 1701 5.784177 TCACTGAACTCTTCGCTTCTATTT 58.216 37.500 0.00 0.00 0.00 1.40
1533 1706 5.869888 TGAACTCTTCGCTTCTATTTCTTCC 59.130 40.000 0.00 0.00 0.00 3.46
1534 1707 5.407407 ACTCTTCGCTTCTATTTCTTCCA 57.593 39.130 0.00 0.00 0.00 3.53
1561 1734 0.764890 ACTGCAGCAAGAGGTTGGTA 59.235 50.000 15.27 0.00 42.60 3.25
1567 1740 2.237143 CAGCAAGAGGTTGGTATGGAGA 59.763 50.000 0.00 0.00 42.60 3.71
1579 1752 6.183360 GGTTGGTATGGAGAAATTCATGAAGG 60.183 42.308 14.54 0.00 0.00 3.46
1582 1755 5.009410 GGTATGGAGAAATTCATGAAGGCTG 59.991 44.000 14.54 0.00 0.00 4.85
1584 1757 4.863548 TGGAGAAATTCATGAAGGCTGAT 58.136 39.130 14.54 0.00 0.00 2.90
1613 1786 3.873952 CGGGAGTTCAGAGATCCATTTTC 59.126 47.826 5.57 0.00 34.62 2.29
1616 1789 5.256474 GGAGTTCAGAGATCCATTTTCCAA 58.744 41.667 0.00 0.00 33.08 3.53
1626 1799 9.430399 AGAGATCCATTTTCCAACAATGATAAT 57.570 29.630 0.00 0.00 34.05 1.28
1632 1805 9.965824 CCATTTTCCAACAATGATAATAGTACC 57.034 33.333 0.00 0.00 34.05 3.34
1645 1818 6.318144 TGATAATAGTACCGAGTATGCTAGCC 59.682 42.308 13.29 0.00 0.00 3.93
1661 1834 0.323178 AGCCTGTTTGAGGATGCTGG 60.323 55.000 0.00 0.00 46.33 4.85
1667 1840 2.886523 TGTTTGAGGATGCTGGTCAAAG 59.113 45.455 0.00 0.00 40.06 2.77
1687 1860 6.268617 TCAAAGAAGAGTTGATGAGAAGGAGA 59.731 38.462 0.00 0.00 30.08 3.71
1698 1871 3.149196 TGAGAAGGAGACAACATTTGGC 58.851 45.455 0.00 0.00 39.66 4.52
1733 1906 6.158520 TCCAGTGAGAATGATAGGGAAAATGA 59.841 38.462 0.00 0.00 0.00 2.57
1743 1916 9.699410 AATGATAGGGAAAATGATGAAACAGTA 57.301 29.630 0.00 0.00 0.00 2.74
1744 1917 9.699410 ATGATAGGGAAAATGATGAAACAGTAA 57.301 29.630 0.00 0.00 0.00 2.24
1745 1918 9.177608 TGATAGGGAAAATGATGAAACAGTAAG 57.822 33.333 0.00 0.00 0.00 2.34
1795 1968 7.281549 TGACAGATGATCAAAGTGATAATGTGG 59.718 37.037 14.20 1.51 41.13 4.17
1802 1975 4.536090 TCAAAGTGATAATGTGGGAGAGGT 59.464 41.667 0.00 0.00 0.00 3.85
1813 1986 4.425772 TGTGGGAGAGGTTTCAGAAGATA 58.574 43.478 0.00 0.00 0.00 1.98
1815 1988 5.179533 GTGGGAGAGGTTTCAGAAGATAAC 58.820 45.833 0.00 0.00 0.00 1.89
1863 2036 0.831711 AATGGGGCCGTGCTTTTTCT 60.832 50.000 0.00 0.00 0.00 2.52
1890 2063 3.688673 GTCAGAGAAAGAAGCTTGATGGG 59.311 47.826 2.10 0.00 0.00 4.00
1903 2076 4.826183 AGCTTGATGGGATAAAGATTGAGC 59.174 41.667 0.00 0.00 0.00 4.26
1929 2102 3.881089 TCAATGTTGATATCAGCAGCCAG 59.119 43.478 23.94 14.60 40.32 4.85
1930 2103 3.572632 ATGTTGATATCAGCAGCCAGT 57.427 42.857 23.94 7.46 40.32 4.00
1969 2142 0.467844 ACCATGTGCAAGAGTTGGCA 60.468 50.000 0.00 0.00 37.77 4.92
1983 2156 2.964464 AGTTGGCAACCATGATGTTTCA 59.036 40.909 25.81 0.00 36.00 2.69
1988 2161 3.444742 GGCAACCATGATGTTTCATCAGA 59.555 43.478 15.78 0.00 40.70 3.27
2000 2173 8.799367 TGATGTTTCATCAGATTTTGATTCTGT 58.201 29.630 8.14 0.00 44.14 3.41
2001 2174 9.286946 GATGTTTCATCAGATTTTGATTCTGTC 57.713 33.333 5.06 0.00 44.14 3.51
2007 2180 5.072055 TCAGATTTTGATTCTGTCAAGCCA 58.928 37.500 1.07 0.00 46.85 4.75
2011 2184 3.777106 TTGATTCTGTCAAGCCAGAGT 57.223 42.857 0.00 0.00 41.79 3.24
2012 2185 3.777106 TGATTCTGTCAAGCCAGAGTT 57.223 42.857 0.00 0.00 42.16 3.01
2040 2213 7.014711 TCCTCTTCTGATATCACTATGGTTGAC 59.985 40.741 0.00 0.00 0.00 3.18
2060 2233 0.379669 GTTGCTCCAATGCTCGATGG 59.620 55.000 0.00 0.00 38.09 3.51
2063 2236 1.209261 TGCTCCAATGCTCGATGGTAA 59.791 47.619 2.83 0.00 37.94 2.85
2077 2250 6.740944 TCGATGGTAATGATCCTCCTTTAA 57.259 37.500 0.00 0.00 0.00 1.52
2092 2265 6.544931 TCCTCCTTTAAGCAATGATGATTCTG 59.455 38.462 0.00 0.00 36.40 3.02
2093 2266 6.238953 CCTCCTTTAAGCAATGATGATTCTGG 60.239 42.308 0.00 0.00 36.40 3.86
2104 2277 5.798125 TGATGATTCTGGTAAGCTAGAGG 57.202 43.478 0.00 0.00 33.71 3.69
2105 2278 5.458595 TGATGATTCTGGTAAGCTAGAGGA 58.541 41.667 0.00 0.00 33.71 3.71
2184 2357 4.540715 CTCCTTTAGGCAATGAATTCCCT 58.459 43.478 2.27 4.65 34.44 4.20
2190 2363 1.332195 GCAATGAATTCCCTAGCCCC 58.668 55.000 2.27 0.00 0.00 5.80
2193 2366 1.059913 ATGAATTCCCTAGCCCCGAG 58.940 55.000 2.27 0.00 0.00 4.63
2201 2374 2.366301 TAGCCCCGAGCCCATTGA 60.366 61.111 0.00 0.00 45.47 2.57
2216 2389 4.098960 GCCCATTGACAATGATGATTCTGT 59.901 41.667 26.36 0.00 41.46 3.41
2229 2402 1.464997 GATTCTGTCTGCGGTTCCAAC 59.535 52.381 0.00 0.00 0.00 3.77
2236 2409 1.856265 CTGCGGTTCCAACTTCTGCC 61.856 60.000 0.00 0.00 0.00 4.85
2238 2411 2.954611 GGTTCCAACTTCTGCCGC 59.045 61.111 0.00 0.00 0.00 6.53
2240 2413 1.600916 GTTCCAACTTCTGCCGCCT 60.601 57.895 0.00 0.00 0.00 5.52
2261 2434 2.912295 TGGATCCTCAAATGGACAGTGA 59.088 45.455 14.23 0.00 39.17 3.41
2270 2443 7.770433 TCCTCAAATGGACAGTGATAATAACAG 59.230 37.037 0.00 0.00 0.00 3.16
2304 2477 8.970859 ATACTAGTAAAGCTGAAAATGATGCT 57.029 30.769 6.70 0.00 37.37 3.79
2431 2604 3.970842 AGGAGTCGTAGATTGGAGTTCT 58.029 45.455 0.00 0.00 40.67 3.01
2460 2633 6.157645 TGGCTAAGAGAAGATCAAGGAAGAAT 59.842 38.462 0.00 0.00 0.00 2.40
2538 2711 0.392461 TCCGTATGCAAGTTCAGCCC 60.392 55.000 0.00 0.00 0.00 5.19
2556 2729 3.117738 AGCCCATTTCAGTATCAAGGAGG 60.118 47.826 0.00 0.00 0.00 4.30
2700 2873 6.484643 GTGTATCTGCACATGATAACTTGGAT 59.515 38.462 0.00 0.00 39.07 3.41
2763 2936 5.378230 TCAAGAGGCATGATACCTTCAAT 57.622 39.130 0.00 0.00 37.77 2.57
2844 3017 7.283127 GCAATGGATATTCAGGAAGAAAGTACA 59.717 37.037 0.00 0.00 40.22 2.90
2925 3098 3.056035 AGTGTGATACCCTTTCTTCGGTC 60.056 47.826 0.00 0.00 33.36 4.79
3066 3239 2.154462 CAAGAGGAATGCAACGACCTT 58.846 47.619 0.00 0.00 32.53 3.50
3069 3242 1.197721 GAGGAATGCAACGACCTTGTG 59.802 52.381 0.00 0.00 32.53 3.33
3152 3325 0.889186 TCTGACGCCCTTTCTTTGGC 60.889 55.000 0.00 0.00 44.41 4.52
3243 3416 4.632153 ACAAGAGCATGTCGAAAGTAACT 58.368 39.130 0.00 0.00 0.00 2.24
3282 3455 1.574702 CCCTTTCTTTGGTCGCCGAC 61.575 60.000 9.15 9.15 0.00 4.79
3293 3466 3.691342 CGCCGACCAGGAGGAACA 61.691 66.667 9.51 0.00 45.00 3.18
3295 3468 2.879233 GCCGACCAGGAGGAACACA 61.879 63.158 9.51 0.00 45.00 3.72
3373 3546 1.664649 TCGAGGCAGAGCGTTGTTG 60.665 57.895 0.00 0.00 0.00 3.33
3396 3569 6.282930 TGCTGAATCTGATATCATTTCGTCA 58.717 36.000 5.72 10.71 0.00 4.35
3400 3573 7.491682 TGAATCTGATATCATTTCGTCAGTCA 58.508 34.615 5.72 0.00 39.22 3.41
3474 3647 3.313524 TCGCCAGAGCTGCCAAGA 61.314 61.111 0.00 0.00 36.60 3.02
3529 3703 1.339929 GCCCAGACACGGTTGATTTTT 59.660 47.619 0.00 0.00 0.00 1.94
3552 3726 2.424956 GGGTGATGAAACTCTGAATGCC 59.575 50.000 0.00 0.00 0.00 4.40
3574 3748 3.785859 TCGCCAGTGGGATGGAGC 61.786 66.667 12.15 0.00 43.57 4.70
3629 3803 6.018588 GCTCTGAATCTTCTGATCAAGTGATG 60.019 42.308 0.00 0.00 35.14 3.07
3643 3817 0.718343 GTGATGTCGAAGCACAGAGC 59.282 55.000 9.92 0.00 46.19 4.09
3790 3967 8.647796 TGTATGTTACAGGTTATTCCATCCTAG 58.352 37.037 0.00 0.00 39.02 3.02
3863 4042 1.871126 GCAGAAGTTTCCCAGCTGCC 61.871 60.000 8.66 0.00 44.50 4.85
3876 4056 0.896479 AGCTGCCATGCAATGTGTGA 60.896 50.000 0.00 0.00 44.81 3.58
3878 4058 1.705256 CTGCCATGCAATGTGTGAAC 58.295 50.000 0.00 0.00 44.81 3.18
3905 4085 1.279496 ATCTAGAACAGTGGCCAGCA 58.721 50.000 5.11 0.00 0.00 4.41
3907 4087 1.160137 CTAGAACAGTGGCCAGCAAC 58.840 55.000 5.11 0.00 0.00 4.17
3945 4126 3.416156 GAACTTGTGAGATTCTTGGCCT 58.584 45.455 3.32 0.00 0.00 5.19
3947 4128 1.471684 CTTGTGAGATTCTTGGCCTGC 59.528 52.381 3.32 0.00 0.00 4.85
3953 4134 1.372087 GATTCTTGGCCTGCGGTCTG 61.372 60.000 3.32 0.00 0.00 3.51
4001 4182 5.275067 TGGAAGCAAGCATACAAAGTTTT 57.725 34.783 0.00 0.00 0.00 2.43
4014 4195 7.655732 GCATACAAAGTTTTCCCTGTACATTTT 59.344 33.333 0.00 0.00 0.00 1.82
4019 4200 6.391227 AGTTTTCCCTGTACATTTTGTGAG 57.609 37.500 0.00 0.00 0.00 3.51
4022 4203 3.146066 TCCCTGTACATTTTGTGAGTGC 58.854 45.455 0.00 0.00 0.00 4.40
4036 4217 5.627499 TGTGAGTGCAATTGGATAGAAAC 57.373 39.130 7.72 1.52 0.00 2.78
4037 4218 5.069318 TGTGAGTGCAATTGGATAGAAACA 58.931 37.500 7.72 4.03 0.00 2.83
4038 4219 5.711506 TGTGAGTGCAATTGGATAGAAACAT 59.288 36.000 7.72 0.00 0.00 2.71
4039 4220 6.127925 TGTGAGTGCAATTGGATAGAAACATC 60.128 38.462 7.72 0.00 0.00 3.06
4040 4221 5.945191 TGAGTGCAATTGGATAGAAACATCA 59.055 36.000 7.72 0.00 0.00 3.07
4041 4222 6.604396 TGAGTGCAATTGGATAGAAACATCAT 59.396 34.615 7.72 0.00 0.00 2.45
4042 4223 7.774625 TGAGTGCAATTGGATAGAAACATCATA 59.225 33.333 7.72 0.00 0.00 2.15
4046 4227 9.276590 TGCAATTGGATAGAAACATCATAGTAG 57.723 33.333 7.72 0.00 0.00 2.57
4065 4246 5.079643 AGTAGTGTTCCAGATGCCATTTTT 58.920 37.500 0.00 0.00 0.00 1.94
4100 4281 3.186909 GCCTTGTGAAGTTGTTCCAAAC 58.813 45.455 0.00 0.00 0.00 2.93
4121 4308 6.817765 AACGAAATGAAAGGAAAGAGCATA 57.182 33.333 0.00 0.00 0.00 3.14
4131 4318 5.573337 AGGAAAGAGCATAATCTTTGTGC 57.427 39.130 6.45 0.00 46.84 4.57
4149 4352 1.338105 TGCCTGTCGGAGATTGTTGAG 60.338 52.381 0.00 0.00 40.67 3.02
4160 4363 6.778069 TCGGAGATTGTTGAGTATCCTTATCT 59.222 38.462 0.00 0.00 0.00 1.98
4178 4381 9.447279 TCCTTATCTAATTCTCAACCCTGATTA 57.553 33.333 0.00 0.00 0.00 1.75
4187 4390 6.024552 TCTCAACCCTGATTATTTGTTTGC 57.975 37.500 0.00 0.00 0.00 3.68
4188 4391 5.774690 TCTCAACCCTGATTATTTGTTTGCT 59.225 36.000 0.00 0.00 0.00 3.91
4192 4395 7.772757 TCAACCCTGATTATTTGTTTGCTTTTT 59.227 29.630 0.00 0.00 0.00 1.94
4211 4414 5.964958 TTTTACCAGAATTTCTCCAGCTG 57.035 39.130 6.78 6.78 0.00 4.24
4226 4429 4.850822 CTGAGATGCAGCGTGGAT 57.149 55.556 0.00 0.00 37.90 3.41
4230 4433 0.879400 GAGATGCAGCGTGGATCCAG 60.879 60.000 16.81 10.69 44.93 3.86
4231 4434 1.144716 GATGCAGCGTGGATCCAGA 59.855 57.895 16.81 0.00 39.00 3.86
4233 4436 1.620739 ATGCAGCGTGGATCCAGACT 61.621 55.000 16.81 12.87 0.00 3.24
4245 4457 2.060050 TCCAGACTACCTAGAGCAGC 57.940 55.000 0.00 0.00 0.00 5.25
4250 4462 2.043349 TACCTAGAGCAGCGGCCA 60.043 61.111 4.82 0.00 42.56 5.36
4270 4482 3.957468 CAAGAGTTGGAACTTGTGAAGC 58.043 45.455 0.00 0.00 39.88 3.86
4295 4511 0.250513 GCCCGTGGTCTGAAGATTCT 59.749 55.000 0.00 0.00 0.00 2.40
4296 4512 1.339151 GCCCGTGGTCTGAAGATTCTT 60.339 52.381 0.00 0.00 0.00 2.52
4303 4519 3.397618 TGGTCTGAAGATTCTTTTCCCCA 59.602 43.478 0.00 3.09 0.00 4.96
4305 4521 3.441922 GTCTGAAGATTCTTTTCCCCAGC 59.558 47.826 0.00 0.00 0.00 4.85
4354 4570 2.923426 CTTCAGCTCCGGCCGCAATA 62.923 60.000 22.85 3.31 39.73 1.90
4368 4584 3.457234 CCGCAATATCAGAAGCTACACA 58.543 45.455 0.00 0.00 0.00 3.72
4373 4589 5.446473 GCAATATCAGAAGCTACACACACAC 60.446 44.000 0.00 0.00 0.00 3.82
4375 4591 3.751479 TCAGAAGCTACACACACACAT 57.249 42.857 0.00 0.00 0.00 3.21
4376 4592 3.392882 TCAGAAGCTACACACACACATG 58.607 45.455 0.00 0.00 0.00 3.21
4377 4593 2.096069 CAGAAGCTACACACACACATGC 60.096 50.000 0.00 0.00 0.00 4.06
4378 4594 1.872952 GAAGCTACACACACACATGCA 59.127 47.619 0.00 0.00 0.00 3.96
4379 4595 1.229428 AGCTACACACACACATGCAC 58.771 50.000 0.00 0.00 0.00 4.57
4380 4596 0.110688 GCTACACACACACATGCACG 60.111 55.000 0.00 0.00 0.00 5.34
4381 4597 0.110688 CTACACACACACATGCACGC 60.111 55.000 0.00 0.00 0.00 5.34
4382 4598 1.826299 TACACACACACATGCACGCG 61.826 55.000 3.53 3.53 0.00 6.01
4383 4599 3.648982 ACACACACATGCACGCGG 61.649 61.111 12.47 0.00 0.00 6.46
4384 4600 3.648982 CACACACATGCACGCGGT 61.649 61.111 12.47 0.00 0.00 5.68
4385 4601 2.899838 ACACACATGCACGCGGTT 60.900 55.556 12.47 0.00 0.00 4.44
4399 4615 0.380378 GCGGTTGCTTCAGTGACAAA 59.620 50.000 0.00 0.00 38.39 2.83
4401 4617 2.733858 GCGGTTGCTTCAGTGACAAAAA 60.734 45.455 0.00 0.00 38.39 1.94
4422 4641 5.869753 AAATTCTCATCTTTGGTCACTCG 57.130 39.130 0.00 0.00 0.00 4.18
4434 4653 1.272781 GTCACTCGATTCAAGGAGCG 58.727 55.000 0.00 0.00 33.55 5.03
4447 4666 2.744768 GGAGCGGCAGAAGAAAGCG 61.745 63.158 1.45 0.00 0.00 4.68
4454 4673 0.664466 GCAGAAGAAAGCGCCCAAAC 60.664 55.000 2.29 0.00 0.00 2.93
4457 4676 0.603065 GAAGAAAGCGCCCAAACCAT 59.397 50.000 2.29 0.00 0.00 3.55
4458 4677 0.603065 AAGAAAGCGCCCAAACCATC 59.397 50.000 2.29 0.00 0.00 3.51
4459 4678 1.215382 GAAAGCGCCCAAACCATCC 59.785 57.895 2.29 0.00 0.00 3.51
4460 4679 1.531739 GAAAGCGCCCAAACCATCCA 61.532 55.000 2.29 0.00 0.00 3.41
4461 4680 1.118356 AAAGCGCCCAAACCATCCAA 61.118 50.000 2.29 0.00 0.00 3.53
4462 4681 1.118356 AAGCGCCCAAACCATCCAAA 61.118 50.000 2.29 0.00 0.00 3.28
4463 4682 0.904394 AGCGCCCAAACCATCCAAAT 60.904 50.000 2.29 0.00 0.00 2.32
4464 4683 0.460109 GCGCCCAAACCATCCAAATC 60.460 55.000 0.00 0.00 0.00 2.17
4465 4684 1.185315 CGCCCAAACCATCCAAATCT 58.815 50.000 0.00 0.00 0.00 2.40
4466 4685 1.550072 CGCCCAAACCATCCAAATCTT 59.450 47.619 0.00 0.00 0.00 2.40
4467 4686 2.674747 CGCCCAAACCATCCAAATCTTG 60.675 50.000 0.00 0.00 0.00 3.02
4468 4687 2.936553 GCCCAAACCATCCAAATCTTGC 60.937 50.000 0.00 0.00 0.00 4.01
4469 4688 2.568509 CCCAAACCATCCAAATCTTGCT 59.431 45.455 0.00 0.00 0.00 3.91
4470 4689 3.008266 CCCAAACCATCCAAATCTTGCTT 59.992 43.478 0.00 0.00 0.00 3.91
4471 4690 3.998341 CCAAACCATCCAAATCTTGCTTG 59.002 43.478 0.00 0.00 0.00 4.01
4472 4691 3.323751 AACCATCCAAATCTTGCTTGC 57.676 42.857 0.00 0.00 0.00 4.01
4473 4692 1.203052 ACCATCCAAATCTTGCTTGCG 59.797 47.619 0.00 0.00 0.00 4.85
4474 4693 1.203052 CCATCCAAATCTTGCTTGCGT 59.797 47.619 0.00 0.00 0.00 5.24
4475 4694 2.256174 CATCCAAATCTTGCTTGCGTG 58.744 47.619 0.00 0.00 0.00 5.34
4476 4695 0.039256 TCCAAATCTTGCTTGCGTGC 60.039 50.000 0.00 0.00 0.00 5.34
4477 4696 0.318869 CCAAATCTTGCTTGCGTGCA 60.319 50.000 0.00 0.00 41.65 4.57
4478 4697 1.670674 CCAAATCTTGCTTGCGTGCAT 60.671 47.619 4.30 0.00 42.96 3.96
4479 4698 1.388768 CAAATCTTGCTTGCGTGCATG 59.611 47.619 0.09 0.09 42.96 4.06
4480 4699 0.883153 AATCTTGCTTGCGTGCATGA 59.117 45.000 10.93 17.09 46.20 3.07
4481 4700 0.169672 ATCTTGCTTGCGTGCATGAC 59.830 50.000 10.93 1.50 45.41 3.06
4482 4701 1.443194 CTTGCTTGCGTGCATGACC 60.443 57.895 10.93 0.00 42.96 4.02
4483 4702 3.252665 TTGCTTGCGTGCATGACCG 62.253 57.895 10.93 0.00 42.96 4.79
4484 4703 3.422303 GCTTGCGTGCATGACCGA 61.422 61.111 10.93 0.00 0.00 4.69
4485 4704 2.476051 CTTGCGTGCATGACCGAC 59.524 61.111 10.93 0.00 0.00 4.79
4486 4705 2.029288 CTTGCGTGCATGACCGACT 61.029 57.895 10.93 0.00 0.00 4.18
4487 4706 2.231745 CTTGCGTGCATGACCGACTG 62.232 60.000 10.93 0.00 0.00 3.51
4488 4707 4.152625 GCGTGCATGACCGACTGC 62.153 66.667 10.93 0.00 38.87 4.40
4489 4708 3.490759 CGTGCATGACCGACTGCC 61.491 66.667 0.00 0.00 37.59 4.85
4490 4709 3.127533 GTGCATGACCGACTGCCC 61.128 66.667 0.00 0.00 37.59 5.36
4491 4710 4.408821 TGCATGACCGACTGCCCC 62.409 66.667 0.00 0.00 37.59 5.80
4493 4712 4.082523 CATGACCGACTGCCCCGT 62.083 66.667 0.00 0.00 0.00 5.28
4494 4713 3.771160 ATGACCGACTGCCCCGTC 61.771 66.667 0.00 0.00 0.00 4.79
4495 4714 4.988716 TGACCGACTGCCCCGTCT 62.989 66.667 0.00 0.00 0.00 4.18
4496 4715 4.131088 GACCGACTGCCCCGTCTC 62.131 72.222 0.00 0.00 0.00 3.36
4502 4721 4.933064 CTGCCCCGTCTCGCGATC 62.933 72.222 10.36 5.22 44.77 3.69
4504 4723 4.933064 GCCCCGTCTCGCGATCAG 62.933 72.222 10.36 3.30 44.77 2.90
4505 4724 3.209812 CCCCGTCTCGCGATCAGA 61.210 66.667 10.36 0.00 44.77 3.27
4506 4725 2.556459 CCCCGTCTCGCGATCAGAT 61.556 63.158 10.36 0.00 44.77 2.90
4507 4726 1.360551 CCCGTCTCGCGATCAGATT 59.639 57.895 10.36 0.00 44.77 2.40
4508 4727 0.661780 CCCGTCTCGCGATCAGATTC 60.662 60.000 10.36 0.00 44.77 2.52
4509 4728 0.309302 CCGTCTCGCGATCAGATTCT 59.691 55.000 10.36 0.00 44.77 2.40
4510 4729 1.268794 CCGTCTCGCGATCAGATTCTT 60.269 52.381 10.36 0.00 44.77 2.52
4511 4730 2.040524 CGTCTCGCGATCAGATTCTTC 58.959 52.381 10.36 0.00 44.77 2.87
4512 4731 2.539750 CGTCTCGCGATCAGATTCTTCA 60.540 50.000 10.36 0.00 44.77 3.02
4513 4732 3.042189 GTCTCGCGATCAGATTCTTCAG 58.958 50.000 10.36 0.00 0.00 3.02
4514 4733 2.945668 TCTCGCGATCAGATTCTTCAGA 59.054 45.455 10.36 0.00 0.00 3.27
4515 4734 3.378427 TCTCGCGATCAGATTCTTCAGAA 59.622 43.478 10.36 0.00 38.56 3.02
4516 4735 3.439293 TCGCGATCAGATTCTTCAGAAC 58.561 45.455 3.71 0.00 36.80 3.01
4517 4736 3.129462 TCGCGATCAGATTCTTCAGAACT 59.871 43.478 3.71 0.00 36.80 3.01
4518 4737 3.862267 CGCGATCAGATTCTTCAGAACTT 59.138 43.478 0.00 0.00 36.80 2.66
4519 4738 4.328440 CGCGATCAGATTCTTCAGAACTTT 59.672 41.667 0.00 0.00 36.80 2.66
4520 4739 5.499971 CGCGATCAGATTCTTCAGAACTTTC 60.500 44.000 0.00 0.00 36.80 2.62
4521 4740 5.580297 GCGATCAGATTCTTCAGAACTTTCT 59.420 40.000 0.00 0.00 36.80 2.52
4522 4741 6.091986 GCGATCAGATTCTTCAGAACTTTCTT 59.908 38.462 0.00 0.00 36.80 2.52
4523 4742 7.673776 GCGATCAGATTCTTCAGAACTTTCTTC 60.674 40.741 0.00 0.00 36.80 2.87
4524 4743 7.462593 CGATCAGATTCTTCAGAACTTTCTTCG 60.463 40.741 0.00 0.00 36.80 3.79
4525 4744 5.928839 TCAGATTCTTCAGAACTTTCTTCGG 59.071 40.000 0.00 0.00 36.80 4.30
4526 4745 4.693095 AGATTCTTCAGAACTTTCTTCGGC 59.307 41.667 0.00 0.00 36.80 5.54
4527 4746 3.753294 TCTTCAGAACTTTCTTCGGCT 57.247 42.857 0.00 0.00 34.74 5.52
4528 4747 3.393800 TCTTCAGAACTTTCTTCGGCTG 58.606 45.455 0.00 0.00 34.74 4.85
4529 4748 3.069586 TCTTCAGAACTTTCTTCGGCTGA 59.930 43.478 0.00 0.00 34.74 4.26
4530 4749 3.469008 TCAGAACTTTCTTCGGCTGAA 57.531 42.857 7.94 7.94 34.74 3.02
4537 4756 2.046507 CTTCGGCTGAAGCTGGCT 60.047 61.111 21.92 0.00 44.70 4.75
4538 4757 1.673665 CTTCGGCTGAAGCTGGCTT 60.674 57.895 21.92 7.60 44.70 4.35
4539 4758 1.919956 CTTCGGCTGAAGCTGGCTTG 61.920 60.000 21.92 0.00 44.70 4.01
4540 4759 2.670934 CGGCTGAAGCTGGCTTGT 60.671 61.111 12.79 0.00 43.47 3.16
4541 4760 1.375908 CGGCTGAAGCTGGCTTGTA 60.376 57.895 12.79 1.19 43.47 2.41
4542 4761 1.364626 CGGCTGAAGCTGGCTTGTAG 61.365 60.000 12.79 11.15 43.47 2.74
4543 4762 0.322008 GGCTGAAGCTGGCTTGTAGT 60.322 55.000 12.79 0.00 41.70 2.73
4544 4763 1.066143 GGCTGAAGCTGGCTTGTAGTA 60.066 52.381 12.79 0.00 41.70 1.82
4545 4764 2.003301 GCTGAAGCTGGCTTGTAGTAC 58.997 52.381 12.79 0.00 36.26 2.73
4546 4765 2.354203 GCTGAAGCTGGCTTGTAGTACT 60.354 50.000 12.79 0.00 36.26 2.73
4547 4766 3.119101 GCTGAAGCTGGCTTGTAGTACTA 60.119 47.826 12.79 0.00 36.26 1.82
4548 4767 4.677584 CTGAAGCTGGCTTGTAGTACTAG 58.322 47.826 12.79 7.32 36.26 2.57
4549 4768 4.087182 TGAAGCTGGCTTGTAGTACTAGT 58.913 43.478 12.79 0.00 36.26 2.57
4550 4769 5.258841 TGAAGCTGGCTTGTAGTACTAGTA 58.741 41.667 12.79 0.00 36.26 1.82
4551 4770 5.357314 TGAAGCTGGCTTGTAGTACTAGTAG 59.643 44.000 12.79 11.65 36.26 2.57
4552 4771 4.857679 AGCTGGCTTGTAGTACTAGTAGT 58.142 43.478 14.57 14.57 0.00 2.73
4553 4772 5.999044 AGCTGGCTTGTAGTACTAGTAGTA 58.001 41.667 12.58 12.58 0.00 1.82
4554 4773 6.056884 AGCTGGCTTGTAGTACTAGTAGTAG 58.943 44.000 16.27 9.13 30.12 2.57
4555 4774 5.277925 GCTGGCTTGTAGTACTAGTAGTAGC 60.278 48.000 16.27 16.92 30.12 3.58
4556 4775 5.999044 TGGCTTGTAGTACTAGTAGTAGCT 58.001 41.667 21.90 12.31 30.12 3.32
4557 4776 6.421485 TGGCTTGTAGTACTAGTAGTAGCTT 58.579 40.000 21.90 2.80 30.12 3.74
4558 4777 6.541641 TGGCTTGTAGTACTAGTAGTAGCTTC 59.458 42.308 21.90 12.30 30.12 3.86
4559 4778 6.767423 GGCTTGTAGTACTAGTAGTAGCTTCT 59.233 42.308 21.90 6.81 30.12 2.85
4560 4779 7.254863 GGCTTGTAGTACTAGTAGTAGCTTCTG 60.255 44.444 21.90 10.79 30.12 3.02
4561 4780 7.551035 TTGTAGTACTAGTAGTAGCTTCTGC 57.449 40.000 16.27 8.19 40.05 4.26
4562 4781 6.054295 TGTAGTACTAGTAGTAGCTTCTGCC 58.946 44.000 16.27 4.72 40.80 4.85
4563 4782 5.113446 AGTACTAGTAGTAGCTTCTGCCA 57.887 43.478 10.38 0.00 40.80 4.92
4564 4783 4.883006 AGTACTAGTAGTAGCTTCTGCCAC 59.117 45.833 10.38 0.00 40.80 5.01
4565 4784 3.698289 ACTAGTAGTAGCTTCTGCCACA 58.302 45.455 0.00 0.00 40.80 4.17
4566 4785 3.444388 ACTAGTAGTAGCTTCTGCCACAC 59.556 47.826 0.00 0.00 40.80 3.82
4567 4786 1.202582 AGTAGTAGCTTCTGCCACACG 59.797 52.381 2.65 0.00 40.80 4.49
4568 4787 0.108804 TAGTAGCTTCTGCCACACGC 60.109 55.000 2.65 0.00 40.80 5.34
4569 4788 2.047274 TAGCTTCTGCCACACGCC 60.047 61.111 0.00 0.00 40.80 5.68
4570 4789 3.932580 TAGCTTCTGCCACACGCCG 62.933 63.158 0.00 0.00 40.80 6.46
4572 4791 2.972505 CTTCTGCCACACGCCGTT 60.973 61.111 0.00 0.00 36.24 4.44
4573 4792 2.954753 CTTCTGCCACACGCCGTTC 61.955 63.158 0.00 0.00 36.24 3.95
4574 4793 3.454587 TTCTGCCACACGCCGTTCT 62.455 57.895 0.00 0.00 36.24 3.01
4575 4794 2.933878 TTCTGCCACACGCCGTTCTT 62.934 55.000 0.00 0.00 36.24 2.52
4576 4795 3.240606 CTGCCACACGCCGTTCTTG 62.241 63.158 0.00 0.00 36.24 3.02
4577 4796 4.683334 GCCACACGCCGTTCTTGC 62.683 66.667 0.00 0.00 0.00 4.01
4578 4797 3.276091 CCACACGCCGTTCTTGCA 61.276 61.111 0.00 0.00 0.00 4.08
4579 4798 2.712539 CACACGCCGTTCTTGCAA 59.287 55.556 0.00 0.00 0.00 4.08
4580 4799 1.282570 CACACGCCGTTCTTGCAAT 59.717 52.632 0.00 0.00 0.00 3.56
4581 4800 0.725784 CACACGCCGTTCTTGCAATC 60.726 55.000 0.00 0.00 0.00 2.67
4582 4801 0.884704 ACACGCCGTTCTTGCAATCT 60.885 50.000 0.00 0.00 0.00 2.40
4583 4802 0.453282 CACGCCGTTCTTGCAATCTG 60.453 55.000 0.00 0.00 0.00 2.90
4584 4803 1.135315 CGCCGTTCTTGCAATCTGG 59.865 57.895 0.00 0.93 0.00 3.86
4585 4804 1.153958 GCCGTTCTTGCAATCTGGC 60.154 57.895 13.95 13.95 0.00 4.85
4586 4805 1.508088 CCGTTCTTGCAATCTGGCC 59.492 57.895 0.00 0.00 0.00 5.36
4587 4806 1.243342 CCGTTCTTGCAATCTGGCCA 61.243 55.000 4.71 4.71 0.00 5.36
4588 4807 0.813184 CGTTCTTGCAATCTGGCCAT 59.187 50.000 5.51 0.00 0.00 4.40
4589 4808 2.016318 CGTTCTTGCAATCTGGCCATA 58.984 47.619 5.51 0.00 0.00 2.74
4590 4809 2.423185 CGTTCTTGCAATCTGGCCATAA 59.577 45.455 5.51 0.00 0.00 1.90
4591 4810 3.119531 CGTTCTTGCAATCTGGCCATAAA 60.120 43.478 5.51 0.00 0.00 1.40
4592 4811 4.617995 CGTTCTTGCAATCTGGCCATAAAA 60.618 41.667 5.51 0.00 0.00 1.52
4593 4812 5.422145 GTTCTTGCAATCTGGCCATAAAAT 58.578 37.500 5.51 0.00 0.00 1.82
4594 4813 5.013568 TCTTGCAATCTGGCCATAAAATG 57.986 39.130 5.51 2.63 0.00 2.32
4595 4814 4.467082 TCTTGCAATCTGGCCATAAAATGT 59.533 37.500 5.51 0.00 0.00 2.71
4596 4815 4.389890 TGCAATCTGGCCATAAAATGTC 57.610 40.909 5.51 0.00 0.00 3.06
4597 4816 3.181488 TGCAATCTGGCCATAAAATGTCG 60.181 43.478 5.51 0.00 0.00 4.35
4598 4817 3.181487 GCAATCTGGCCATAAAATGTCGT 60.181 43.478 5.51 0.00 0.00 4.34
4599 4818 4.353737 CAATCTGGCCATAAAATGTCGTG 58.646 43.478 5.51 0.00 0.00 4.35
4600 4819 1.742831 TCTGGCCATAAAATGTCGTGC 59.257 47.619 5.51 0.00 0.00 5.34
4601 4820 0.814457 TGGCCATAAAATGTCGTGCC 59.186 50.000 0.00 0.00 35.34 5.01
4602 4821 1.102978 GGCCATAAAATGTCGTGCCT 58.897 50.000 0.00 0.00 33.03 4.75
4603 4822 1.065551 GGCCATAAAATGTCGTGCCTC 59.934 52.381 0.00 0.00 33.03 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.641437 TTCATGCCAAGACTTTTTCCG 57.359 42.857 0.00 0.00 0.00 4.30
58 59 3.426525 CGCTTTCATGCCAAGACTTTTTC 59.573 43.478 8.29 0.00 0.00 2.29
59 60 3.383761 CGCTTTCATGCCAAGACTTTTT 58.616 40.909 8.29 0.00 0.00 1.94
163 164 0.958876 GATCCCTTTCCCGCGTGTTT 60.959 55.000 4.92 0.00 0.00 2.83
290 316 4.077184 TGCTGGTACTTCCGCGGG 62.077 66.667 27.83 13.23 38.10 6.13
291 317 2.501223 TTCTGCTGGTACTTCCGCGG 62.501 60.000 22.12 22.12 40.64 6.46
292 318 1.078759 CTTCTGCTGGTACTTCCGCG 61.079 60.000 0.00 0.00 38.10 6.46
293 319 0.246635 TCTTCTGCTGGTACTTCCGC 59.753 55.000 0.00 0.00 39.52 5.54
294 320 1.819288 TCTCTTCTGCTGGTACTTCCG 59.181 52.381 0.00 0.00 39.52 4.30
295 321 3.431486 CCATCTCTTCTGCTGGTACTTCC 60.431 52.174 0.00 0.00 0.00 3.46
296 322 3.196685 ACCATCTCTTCTGCTGGTACTTC 59.803 47.826 0.00 0.00 40.16 3.01
297 323 3.055530 CACCATCTCTTCTGCTGGTACTT 60.056 47.826 0.00 0.00 39.96 2.24
298 324 2.499289 CACCATCTCTTCTGCTGGTACT 59.501 50.000 0.00 0.00 39.96 2.73
299 325 2.234908 ACACCATCTCTTCTGCTGGTAC 59.765 50.000 0.00 0.00 39.96 3.34
305 336 3.196463 CTCATCACACCATCTCTTCTGC 58.804 50.000 0.00 0.00 0.00 4.26
434 465 3.993736 GCTCAAGAAAGTGAAGGAGTCTC 59.006 47.826 0.00 0.00 0.00 3.36
435 466 3.645687 AGCTCAAGAAAGTGAAGGAGTCT 59.354 43.478 0.00 0.00 0.00 3.24
436 467 3.993736 GAGCTCAAGAAAGTGAAGGAGTC 59.006 47.826 9.40 0.00 0.00 3.36
437 468 3.553922 CGAGCTCAAGAAAGTGAAGGAGT 60.554 47.826 15.40 0.00 0.00 3.85
438 469 2.992543 CGAGCTCAAGAAAGTGAAGGAG 59.007 50.000 15.40 0.00 0.00 3.69
439 470 2.289072 CCGAGCTCAAGAAAGTGAAGGA 60.289 50.000 15.40 0.00 0.00 3.36
440 471 2.072298 CCGAGCTCAAGAAAGTGAAGG 58.928 52.381 15.40 0.00 0.00 3.46
441 472 3.032017 TCCGAGCTCAAGAAAGTGAAG 57.968 47.619 15.40 0.00 0.00 3.02
442 473 3.006859 TGATCCGAGCTCAAGAAAGTGAA 59.993 43.478 15.40 0.00 0.00 3.18
443 474 2.562738 TGATCCGAGCTCAAGAAAGTGA 59.437 45.455 15.40 0.00 0.00 3.41
444 475 2.670414 GTGATCCGAGCTCAAGAAAGTG 59.330 50.000 15.40 0.00 0.00 3.16
445 476 2.354203 GGTGATCCGAGCTCAAGAAAGT 60.354 50.000 15.40 0.00 0.00 2.66
446 477 2.275318 GGTGATCCGAGCTCAAGAAAG 58.725 52.381 15.40 0.00 0.00 2.62
447 478 1.623311 TGGTGATCCGAGCTCAAGAAA 59.377 47.619 15.40 0.33 36.30 2.52
448 479 1.266178 TGGTGATCCGAGCTCAAGAA 58.734 50.000 15.40 0.00 36.30 2.52
449 480 1.489481 ATGGTGATCCGAGCTCAAGA 58.511 50.000 15.40 10.29 36.30 3.02
470 501 0.840722 AGGGGAGCGAAGGAAAGGAA 60.841 55.000 0.00 0.00 0.00 3.36
501 532 1.666209 GGTTGGCAATGGTGATCCCG 61.666 60.000 1.92 0.00 35.15 5.14
535 566 3.933722 AGATGGGATCGCCGGCAG 61.934 66.667 28.98 19.33 33.83 4.85
536 567 4.240103 CAGATGGGATCGCCGGCA 62.240 66.667 28.98 14.46 33.83 5.69
538 569 1.595382 GTTCAGATGGGATCGCCGG 60.595 63.158 7.38 0.00 33.83 6.13
543 574 3.200825 TCTTGGGAAGTTCAGATGGGATC 59.799 47.826 5.01 0.00 0.00 3.36
544 575 3.192944 TCTTGGGAAGTTCAGATGGGAT 58.807 45.455 5.01 0.00 0.00 3.85
545 576 2.573462 CTCTTGGGAAGTTCAGATGGGA 59.427 50.000 5.01 0.00 0.00 4.37
548 579 2.290514 TGCCTCTTGGGAAGTTCAGATG 60.291 50.000 5.01 0.00 37.23 2.90
549 580 1.988107 TGCCTCTTGGGAAGTTCAGAT 59.012 47.619 5.01 0.00 37.23 2.90
550 581 1.434188 TGCCTCTTGGGAAGTTCAGA 58.566 50.000 5.01 0.00 37.23 3.27
551 582 2.276732 TTGCCTCTTGGGAAGTTCAG 57.723 50.000 5.01 0.00 38.80 3.02
553 584 1.740025 CGATTGCCTCTTGGGAAGTTC 59.260 52.381 0.00 0.00 46.70 3.01
556 587 1.709147 CGCGATTGCCTCTTGGGAAG 61.709 60.000 0.00 0.00 46.70 3.46
558 589 2.125147 CGCGATTGCCTCTTGGGA 60.125 61.111 0.00 0.00 38.08 4.37
559 590 2.923426 TAGCGCGATTGCCTCTTGGG 62.923 60.000 12.10 0.00 38.08 4.12
560 591 1.493950 CTAGCGCGATTGCCTCTTGG 61.494 60.000 12.10 0.00 38.08 3.61
562 593 1.884926 GCTAGCGCGATTGCCTCTT 60.885 57.895 19.78 0.00 38.08 2.85
563 594 2.279784 GCTAGCGCGATTGCCTCT 60.280 61.111 19.78 2.24 38.08 3.69
565 596 2.176273 CAAGCTAGCGCGATTGCCT 61.176 57.895 25.91 11.90 42.32 4.75
569 607 2.125147 TGGCAAGCTAGCGCGATT 60.125 55.556 12.10 0.00 42.32 3.34
581 619 1.066908 CGAACAAGAAAAGGCTGGCAA 59.933 47.619 3.38 0.00 0.00 4.52
585 623 2.099098 ACAACCGAACAAGAAAAGGCTG 59.901 45.455 0.00 0.00 0.00 4.85
601 658 2.991540 GGCAGGCCAGGAACAACC 60.992 66.667 5.01 0.00 39.35 3.77
602 659 1.115326 AAAGGCAGGCCAGGAACAAC 61.115 55.000 13.63 0.00 38.92 3.32
603 660 1.114722 CAAAGGCAGGCCAGGAACAA 61.115 55.000 13.63 0.00 38.92 2.83
604 661 1.531365 CAAAGGCAGGCCAGGAACA 60.531 57.895 13.63 0.00 38.92 3.18
605 662 0.613012 ATCAAAGGCAGGCCAGGAAC 60.613 55.000 13.63 0.00 38.92 3.62
607 664 1.210204 AGATCAAAGGCAGGCCAGGA 61.210 55.000 13.63 7.03 38.92 3.86
608 665 0.324091 AAGATCAAAGGCAGGCCAGG 60.324 55.000 13.63 0.00 38.92 4.45
609 666 1.101331 GAAGATCAAAGGCAGGCCAG 58.899 55.000 13.63 0.00 38.92 4.85
610 667 0.700564 AGAAGATCAAAGGCAGGCCA 59.299 50.000 13.63 0.00 38.92 5.36
611 668 1.101331 CAGAAGATCAAAGGCAGGCC 58.899 55.000 0.97 0.97 0.00 5.19
612 669 0.455005 GCAGAAGATCAAAGGCAGGC 59.545 55.000 0.00 0.00 0.00 4.85
613 670 1.101331 GGCAGAAGATCAAAGGCAGG 58.899 55.000 0.00 0.00 0.00 4.85
621 678 1.449070 CAGCAGCGGCAGAAGATCA 60.449 57.895 12.44 0.00 44.61 2.92
667 724 2.593956 AAGAACAGAGGACCGGGGC 61.594 63.158 6.32 0.00 0.00 5.80
669 726 1.376037 GCAAGAACAGAGGACCGGG 60.376 63.158 6.32 0.00 0.00 5.73
713 770 1.488261 CCTTTAAGCGGACGCCGATC 61.488 60.000 20.06 5.36 44.45 3.69
718 775 0.390209 TGGTACCTTTAAGCGGACGC 60.390 55.000 14.36 8.91 42.33 5.19
723 780 4.312443 TCAGAAGTTGGTACCTTTAAGCG 58.688 43.478 14.36 0.00 0.00 4.68
728 785 2.711547 AGCCTCAGAAGTTGGTACCTTT 59.288 45.455 14.36 5.03 0.00 3.11
746 803 2.543777 TTAATACTGGATCGGCAGCC 57.456 50.000 0.00 0.00 0.00 4.85
750 807 3.123621 CGCTGAATTAATACTGGATCGGC 59.876 47.826 6.38 6.38 36.17 5.54
757 814 5.592054 TCTGGAGACGCTGAATTAATACTG 58.408 41.667 0.00 0.00 0.00 2.74
759 816 5.593010 ACTCTGGAGACGCTGAATTAATAC 58.407 41.667 4.49 0.00 0.00 1.89
762 819 5.654603 TTACTCTGGAGACGCTGAATTAA 57.345 39.130 4.49 0.00 0.00 1.40
770 941 3.119291 CACATGATTACTCTGGAGACGC 58.881 50.000 0.00 0.00 0.00 5.19
774 945 7.854557 TTCAATTCACATGATTACTCTGGAG 57.145 36.000 0.00 0.00 0.00 3.86
783 954 8.084073 ACGTTCAAGAATTCAATTCACATGATT 58.916 29.630 12.74 0.00 41.71 2.57
787 958 5.630680 GCACGTTCAAGAATTCAATTCACAT 59.369 36.000 12.74 0.00 41.71 3.21
797 968 1.880027 GTGGGAGCACGTTCAAGAATT 59.120 47.619 0.00 0.00 0.00 2.17
800 971 0.396435 ATGTGGGAGCACGTTCAAGA 59.604 50.000 0.00 0.00 0.00 3.02
806 977 1.623811 ACTAGAAATGTGGGAGCACGT 59.376 47.619 0.00 0.00 0.00 4.49
807 978 2.386661 ACTAGAAATGTGGGAGCACG 57.613 50.000 0.00 0.00 0.00 5.34
808 979 5.246307 ACTAAACTAGAAATGTGGGAGCAC 58.754 41.667 0.00 0.00 0.00 4.40
810 981 5.582665 CAGACTAAACTAGAAATGTGGGAGC 59.417 44.000 0.00 0.00 0.00 4.70
813 985 9.265901 CATATCAGACTAAACTAGAAATGTGGG 57.734 37.037 0.00 0.00 0.00 4.61
834 1006 9.822185 ATGGCTTTCAATTCTAAAAACCATATC 57.178 29.630 9.22 0.00 33.95 1.63
902 1075 9.886132 GAATTCTACCAGAGGTTTAATTCTACA 57.114 33.333 18.73 0.00 39.62 2.74
921 1094 8.768019 CAACATTAGCTCATCGAATGAATTCTA 58.232 33.333 12.09 0.00 39.28 2.10
951 1124 3.743396 CAGACCTAGCAGAGAAAACACAC 59.257 47.826 0.00 0.00 0.00 3.82
1008 1181 1.991121 ATGTATCATGCTTGGCCTGG 58.009 50.000 3.32 0.00 0.00 4.45
1066 1239 3.963374 TGTTCAGAGGCACATCTATAGCT 59.037 43.478 0.00 0.00 0.00 3.32
1159 1332 1.650528 ACAGGGGAAGTGGAGAGAAG 58.349 55.000 0.00 0.00 0.00 2.85
1185 1358 1.150536 AAGAAGAAGGGTGGCGCAA 59.849 52.632 10.83 0.00 0.00 4.85
1221 1394 0.325933 CAGGAAGATGTGTGCTCCCA 59.674 55.000 0.00 0.00 0.00 4.37
1273 1446 0.111253 CCAAACCTGGGAGCTGAACT 59.889 55.000 0.00 0.00 39.30 3.01
1319 1492 3.128242 CACTGAAAATCCCTGATGTGCTC 59.872 47.826 0.00 0.00 0.00 4.26
1338 1511 1.277557 CTCTCCTTAACTGCAGGCACT 59.722 52.381 19.93 1.77 43.88 4.40
1358 1531 3.494251 CCAACATTTAAAGCCAACTGTGC 59.506 43.478 0.00 0.00 0.00 4.57
1361 1534 4.599047 TCCCAACATTTAAAGCCAACTG 57.401 40.909 0.00 0.00 0.00 3.16
1371 1544 5.841237 TGGGTTTCTGATTTCCCAACATTTA 59.159 36.000 10.97 0.00 45.66 1.40
1384 1557 5.011023 CCTTGCTAAAACTTGGGTTTCTGAT 59.989 40.000 0.00 0.00 43.90 2.90
1402 1575 2.282745 GTCAGCCCTTGCCTTGCT 60.283 61.111 0.00 0.00 38.69 3.91
1423 1596 5.528043 ACAGTATCATCCAGCTCAGTAAG 57.472 43.478 0.00 0.00 0.00 2.34
1424 1597 5.163405 GGAACAGTATCATCCAGCTCAGTAA 60.163 44.000 0.00 0.00 33.30 2.24
1425 1598 4.342378 GGAACAGTATCATCCAGCTCAGTA 59.658 45.833 0.00 0.00 33.30 2.74
1426 1599 3.133721 GGAACAGTATCATCCAGCTCAGT 59.866 47.826 0.00 0.00 33.30 3.41
1427 1600 3.387374 AGGAACAGTATCATCCAGCTCAG 59.613 47.826 0.00 0.00 35.62 3.35
1428 1601 3.378512 AGGAACAGTATCATCCAGCTCA 58.621 45.455 0.00 0.00 35.62 4.26
1432 1605 6.409704 TCAAAAGAGGAACAGTATCATCCAG 58.590 40.000 0.00 0.00 35.62 3.86
1433 1606 6.373005 TCAAAAGAGGAACAGTATCATCCA 57.627 37.500 0.00 0.00 35.62 3.41
1460 1633 6.383436 TCTCTCATCTCCTTGATCAACTGATT 59.617 38.462 3.38 0.00 34.37 2.57
1493 1666 6.449635 AGAGTTCAGTGAGTCTATCATGTC 57.550 41.667 5.49 0.00 40.92 3.06
1507 1680 6.031751 AGAAATAGAAGCGAAGAGTTCAGT 57.968 37.500 0.00 0.00 0.00 3.41
1512 1685 5.407407 TGGAAGAAATAGAAGCGAAGAGT 57.593 39.130 0.00 0.00 0.00 3.24
1513 1686 5.236047 CCATGGAAGAAATAGAAGCGAAGAG 59.764 44.000 5.56 0.00 0.00 2.85
1515 1688 4.878397 ACCATGGAAGAAATAGAAGCGAAG 59.122 41.667 21.47 0.00 0.00 3.79
1519 1692 4.943705 TGTCACCATGGAAGAAATAGAAGC 59.056 41.667 21.47 2.30 0.00 3.86
1528 1701 0.764271 TGCAGTGTCACCATGGAAGA 59.236 50.000 21.47 13.24 0.00 2.87
1533 1706 0.240145 CTTGCTGCAGTGTCACCATG 59.760 55.000 16.64 2.12 0.00 3.66
1534 1707 0.109153 TCTTGCTGCAGTGTCACCAT 59.891 50.000 16.64 0.00 0.00 3.55
1561 1734 4.863548 TCAGCCTTCATGAATTTCTCCAT 58.136 39.130 8.96 0.00 0.00 3.41
1579 1752 1.936547 GAACTCCCGTTCATGATCAGC 59.063 52.381 0.09 0.00 46.88 4.26
1598 1771 6.247676 TCATTGTTGGAAAATGGATCTCTGA 58.752 36.000 0.00 0.00 36.01 3.27
1613 1786 9.140286 CATACTCGGTACTATTATCATTGTTGG 57.860 37.037 0.00 0.00 0.00 3.77
1616 1789 8.123639 AGCATACTCGGTACTATTATCATTGT 57.876 34.615 0.00 0.00 0.00 2.71
1626 1799 3.181447 ACAGGCTAGCATACTCGGTACTA 60.181 47.826 18.24 0.00 0.00 1.82
1632 1805 3.119291 CTCAAACAGGCTAGCATACTCG 58.881 50.000 18.24 0.00 0.00 4.18
1645 1818 2.189594 TGACCAGCATCCTCAAACAG 57.810 50.000 0.00 0.00 0.00 3.16
1661 1834 6.226787 TCCTTCTCATCAACTCTTCTTTGAC 58.773 40.000 0.00 0.00 35.82 3.18
1667 1840 5.398603 TGTCTCCTTCTCATCAACTCTTC 57.601 43.478 0.00 0.00 0.00 2.87
1687 1860 4.082026 GGAAGAGCATAAGCCAAATGTTGT 60.082 41.667 0.00 0.00 43.56 3.32
1698 1871 5.668471 TCATTCTCACTGGAAGAGCATAAG 58.332 41.667 0.00 0.00 37.43 1.73
1733 1906 9.971922 CTTGATTTTCCTTTCTTACTGTTTCAT 57.028 29.630 0.00 0.00 0.00 2.57
1763 1936 7.514784 TCACTTTGATCATCTGTCAACAATT 57.485 32.000 0.00 0.00 35.47 2.32
1765 1938 8.620116 TTATCACTTTGATCATCTGTCAACAA 57.380 30.769 0.00 0.00 38.26 2.83
1768 1941 8.671028 CACATTATCACTTTGATCATCTGTCAA 58.329 33.333 0.00 0.00 38.26 3.18
1770 1943 7.255035 CCCACATTATCACTTTGATCATCTGTC 60.255 40.741 0.00 0.00 38.26 3.51
1777 1950 5.762218 CCTCTCCCACATTATCACTTTGATC 59.238 44.000 0.00 0.00 38.26 2.92
1778 1951 5.192522 ACCTCTCCCACATTATCACTTTGAT 59.807 40.000 0.00 0.00 40.72 2.57
1779 1952 4.536090 ACCTCTCCCACATTATCACTTTGA 59.464 41.667 0.00 0.00 0.00 2.69
1795 1968 4.225267 TGGGTTATCTTCTGAAACCTCTCC 59.775 45.833 8.45 0.87 41.95 3.71
1829 2002 0.171007 CCATTTGCAAGTACCAGCCG 59.829 55.000 0.00 0.00 0.00 5.52
1863 2036 1.964223 AGCTTCTTTCTCTGACGGACA 59.036 47.619 0.00 0.00 0.00 4.02
1918 2091 2.465813 AGAGTCTAACTGGCTGCTGAT 58.534 47.619 0.00 0.00 0.00 2.90
1929 2102 7.216973 TGGTGAAACTAGAGAAGAGTCTAAC 57.783 40.000 0.00 0.00 36.74 2.34
1930 2103 7.451877 ACATGGTGAAACTAGAGAAGAGTCTAA 59.548 37.037 0.00 0.00 36.74 2.10
1969 2142 7.898918 TCAAAATCTGATGAAACATCATGGTT 58.101 30.769 13.54 0.00 0.00 3.67
1983 2156 5.713389 TGGCTTGACAGAATCAAAATCTGAT 59.287 36.000 10.27 0.00 46.80 2.90
1988 2161 5.075493 ACTCTGGCTTGACAGAATCAAAAT 58.925 37.500 7.64 0.00 46.80 1.82
2011 2184 8.324191 ACCATAGTGATATCAGAAGAGGAAAA 57.676 34.615 5.42 0.00 0.00 2.29
2012 2185 7.921041 ACCATAGTGATATCAGAAGAGGAAA 57.079 36.000 5.42 0.00 0.00 3.13
2040 2213 0.027194 CATCGAGCATTGGAGCAACG 59.973 55.000 0.00 0.00 37.69 4.10
2060 2233 7.807977 TCATTGCTTAAAGGAGGATCATTAC 57.192 36.000 0.00 0.00 38.69 1.89
2063 2236 6.607970 TCATCATTGCTTAAAGGAGGATCAT 58.392 36.000 0.00 0.00 34.74 2.45
2077 2250 4.789807 AGCTTACCAGAATCATCATTGCT 58.210 39.130 0.00 0.00 0.00 3.91
2184 2357 2.366301 TCAATGGGCTCGGGGCTA 60.366 61.111 9.45 1.65 41.46 3.93
2190 2363 2.291365 TCATCATTGTCAATGGGCTCG 58.709 47.619 22.44 9.15 39.38 5.03
2193 2366 4.098960 ACAGAATCATCATTGTCAATGGGC 59.901 41.667 22.44 8.31 39.38 5.36
2201 2374 2.941064 CCGCAGACAGAATCATCATTGT 59.059 45.455 0.00 0.00 0.00 2.71
2216 2389 0.884704 GCAGAAGTTGGAACCGCAGA 60.885 55.000 0.00 0.00 0.00 4.26
2229 2402 2.203126 GGATCCAGGCGGCAGAAG 60.203 66.667 13.08 0.00 0.00 2.85
2236 2409 0.181114 TCCATTTGAGGATCCAGGCG 59.819 55.000 15.82 0.00 31.23 5.52
2238 2411 2.240667 ACTGTCCATTTGAGGATCCAGG 59.759 50.000 15.82 5.82 40.42 4.45
2240 2413 2.912295 TCACTGTCCATTTGAGGATCCA 59.088 45.455 15.82 0.00 40.42 3.41
2261 2434 7.967908 ACTAGTATCAGGCTTGCTGTTATTAT 58.032 34.615 0.00 0.00 0.00 1.28
2270 2443 4.509600 CAGCTTTACTAGTATCAGGCTTGC 59.490 45.833 8.14 3.36 0.00 4.01
2304 2477 6.952605 TCCTTCTTCTTTTCTCCATCCTTA 57.047 37.500 0.00 0.00 0.00 2.69
2431 2604 5.426509 TCCTTGATCTTCTCTTAGCCATCAA 59.573 40.000 0.00 0.00 0.00 2.57
2538 2711 4.133078 GGCTCCTCCTTGATACTGAAATG 58.867 47.826 0.00 0.00 0.00 2.32
2556 2729 1.270826 GAAGCAAGGTCAAAAGGGCTC 59.729 52.381 0.00 0.00 0.00 4.70
2671 2844 2.401583 TCATGTGCAGATACACCACC 57.598 50.000 0.00 0.00 39.93 4.61
2673 2846 5.357742 AGTTATCATGTGCAGATACACCA 57.642 39.130 0.00 0.00 39.93 4.17
2674 2847 5.008019 CCAAGTTATCATGTGCAGATACACC 59.992 44.000 0.00 0.00 39.93 4.16
2700 2873 5.707298 GGAACCTGTCATGATTTCTTGAGAA 59.293 40.000 0.00 0.00 31.81 2.87
2763 2936 0.889186 GTCTCTCTTGGCCGCCAAAA 60.889 55.000 24.83 12.29 43.44 2.44
2844 3017 1.377994 CTGCCTCTGGAAACTGCCT 59.622 57.895 0.00 0.00 0.00 4.75
2925 3098 1.730501 TGCTTTCCTCTTGATCAGCG 58.269 50.000 0.00 0.00 34.00 5.18
3038 3211 1.937391 CATTCCTCTTGATCGGCGC 59.063 57.895 0.00 0.00 0.00 6.53
3066 3239 4.584325 CACCTCTGGAAATCCTTTTTCACA 59.416 41.667 0.44 0.00 36.82 3.58
3069 3242 4.152647 ACCACCTCTGGAAATCCTTTTTC 58.847 43.478 0.44 0.00 40.55 2.29
3152 3325 2.434359 GTTCCTCTTGACCGGCGG 60.434 66.667 27.06 27.06 0.00 6.13
3243 3416 2.487762 GGCATCGGATTCAGAAACAACA 59.512 45.455 0.00 0.00 0.00 3.33
3282 3455 1.004918 GTCGGTGTGTTCCTCCTGG 60.005 63.158 0.00 0.00 0.00 4.45
3293 3466 4.941873 GGAAATCCTTATTGAAGTCGGTGT 59.058 41.667 0.00 0.00 0.00 4.16
3295 3468 5.437191 AGGAAATCCTTATTGAAGTCGGT 57.563 39.130 0.00 0.00 46.09 4.69
3373 3546 6.423302 ACTGACGAAATGATATCAGATTCAGC 59.577 38.462 23.35 17.42 40.92 4.26
3396 3569 1.187087 GGTCCTCTTGATCGGTGACT 58.813 55.000 0.00 0.00 0.00 3.41
3474 3647 4.262164 GCATTTCCAACATCACTTTCCTGT 60.262 41.667 0.00 0.00 0.00 4.00
3529 3703 3.507233 GCATTCAGAGTTTCATCACCCAA 59.493 43.478 0.00 0.00 0.00 4.12
3530 3704 3.084039 GCATTCAGAGTTTCATCACCCA 58.916 45.455 0.00 0.00 0.00 4.51
3574 3748 1.880894 CATTGCACACTGGCTCAGG 59.119 57.895 7.06 0.01 35.51 3.86
3643 3817 6.748132 ACATTCACAAAATGTACAGGGAAAG 58.252 36.000 0.33 0.23 38.94 2.62
3748 3924 9.944663 TGTAACATACACAAAAATTGTTCTCTC 57.055 29.630 0.00 0.00 43.23 3.20
3752 3928 8.865590 ACCTGTAACATACACAAAAATTGTTC 57.134 30.769 0.00 0.00 43.23 3.18
3761 3938 7.554835 GGATGGAATAACCTGTAACATACACAA 59.445 37.037 0.00 0.00 39.86 3.33
3811 3990 5.012893 ACAGGAATCAGGGTTGAAGATTTC 58.987 41.667 0.00 0.00 36.78 2.17
3816 3995 3.305608 GCAAACAGGAATCAGGGTTGAAG 60.306 47.826 5.53 0.00 36.78 3.02
3863 4042 2.068837 GTGGGTTCACACATTGCATG 57.931 50.000 0.00 0.00 43.13 4.06
3876 4056 5.745227 CCACTGTTCTAGATAATGTGGGTT 58.255 41.667 18.87 0.00 39.58 4.11
3878 4058 4.130118 GCCACTGTTCTAGATAATGTGGG 58.870 47.826 23.73 10.81 42.42 4.61
3884 4064 2.837591 TGCTGGCCACTGTTCTAGATAA 59.162 45.455 0.00 0.00 0.00 1.75
3905 4085 3.182996 AAGTCTTGGGCGGGGGTT 61.183 61.111 0.00 0.00 0.00 4.11
3920 4101 4.320788 GCCAAGAATCTCACAAGTTCCAAG 60.321 45.833 0.00 0.00 0.00 3.61
3945 4126 1.328279 TCTTCTTCAGACAGACCGCA 58.672 50.000 0.00 0.00 0.00 5.69
3947 4128 3.175152 CGAATCTTCTTCAGACAGACCG 58.825 50.000 0.00 0.00 32.83 4.79
3953 4134 3.685272 GGGGAAACGAATCTTCTTCAGAC 59.315 47.826 0.00 0.00 32.83 3.51
3992 4173 6.816140 CACAAAATGTACAGGGAAAACTTTGT 59.184 34.615 0.33 4.47 35.47 2.83
4001 4182 3.146066 GCACTCACAAAATGTACAGGGA 58.854 45.455 0.33 0.00 0.00 4.20
4014 4195 5.069318 TGTTTCTATCCAATTGCACTCACA 58.931 37.500 0.00 0.00 0.00 3.58
4019 4200 7.934457 ACTATGATGTTTCTATCCAATTGCAC 58.066 34.615 0.00 0.00 0.00 4.57
4036 4217 4.993584 GGCATCTGGAACACTACTATGATG 59.006 45.833 0.00 0.00 34.82 3.07
4037 4218 4.655649 TGGCATCTGGAACACTACTATGAT 59.344 41.667 0.00 0.00 0.00 2.45
4038 4219 4.030216 TGGCATCTGGAACACTACTATGA 58.970 43.478 0.00 0.00 0.00 2.15
4039 4220 4.406648 TGGCATCTGGAACACTACTATG 57.593 45.455 0.00 0.00 0.00 2.23
4040 4221 5.636903 AATGGCATCTGGAACACTACTAT 57.363 39.130 0.00 0.00 0.00 2.12
4041 4222 5.435686 AAATGGCATCTGGAACACTACTA 57.564 39.130 0.00 0.00 0.00 1.82
4042 4223 4.307032 AAATGGCATCTGGAACACTACT 57.693 40.909 0.00 0.00 0.00 2.57
4065 4246 2.811431 CACAAGGCCTATTGACGTTCAA 59.189 45.455 5.16 0.00 41.09 2.69
4071 4252 3.821033 ACAACTTCACAAGGCCTATTGAC 59.179 43.478 5.16 0.00 34.20 3.18
4074 4255 3.826729 GGAACAACTTCACAAGGCCTATT 59.173 43.478 5.16 0.00 0.00 1.73
4077 4258 1.064017 TGGAACAACTTCACAAGGCCT 60.064 47.619 0.00 0.00 31.92 5.19
4100 4281 7.701445 AGATTATGCTCTTTCCTTTCATTTCG 58.299 34.615 0.00 0.00 0.00 3.46
4121 4308 1.347707 TCTCCGACAGGCACAAAGATT 59.652 47.619 0.00 0.00 37.47 2.40
4131 4318 2.751166 ACTCAACAATCTCCGACAGG 57.249 50.000 0.00 0.00 39.46 4.00
4149 4352 8.871125 TCAGGGTTGAGAATTAGATAAGGATAC 58.129 37.037 0.00 0.00 0.00 2.24
4165 4368 6.029346 AGCAAACAAATAATCAGGGTTGAG 57.971 37.500 0.00 0.00 36.61 3.02
4178 4381 9.394767 AGAAATTCTGGTAAAAAGCAAACAAAT 57.605 25.926 0.00 0.00 0.00 2.32
4179 4382 8.785329 AGAAATTCTGGTAAAAAGCAAACAAA 57.215 26.923 0.00 0.00 0.00 2.83
4180 4383 7.494298 GGAGAAATTCTGGTAAAAAGCAAACAA 59.506 33.333 0.00 0.00 0.00 2.83
4181 4384 6.983890 GGAGAAATTCTGGTAAAAAGCAAACA 59.016 34.615 0.00 0.00 0.00 2.83
4182 4385 6.983890 TGGAGAAATTCTGGTAAAAAGCAAAC 59.016 34.615 0.00 0.00 0.00 2.93
4185 4388 5.278957 GCTGGAGAAATTCTGGTAAAAAGCA 60.279 40.000 0.00 0.00 0.00 3.91
4186 4389 5.047731 AGCTGGAGAAATTCTGGTAAAAAGC 60.048 40.000 0.00 0.00 0.00 3.51
4187 4390 6.207417 TCAGCTGGAGAAATTCTGGTAAAAAG 59.793 38.462 15.13 0.00 0.00 2.27
4188 4391 6.068010 TCAGCTGGAGAAATTCTGGTAAAAA 58.932 36.000 15.13 0.00 0.00 1.94
4211 4414 0.879400 CTGGATCCACGCTGCATCTC 60.879 60.000 11.44 0.00 0.00 2.75
4218 4421 0.033011 AGGTAGTCTGGATCCACGCT 60.033 55.000 11.44 13.91 0.00 5.07
4219 4422 1.609555 CTAGGTAGTCTGGATCCACGC 59.390 57.143 11.44 6.52 0.00 5.34
4220 4423 3.142951 CTCTAGGTAGTCTGGATCCACG 58.857 54.545 11.44 7.61 32.40 4.94
4223 4426 3.153919 CTGCTCTAGGTAGTCTGGATCC 58.846 54.545 4.20 4.20 32.40 3.36
4226 4429 1.747552 CGCTGCTCTAGGTAGTCTGGA 60.748 57.143 0.00 0.00 0.00 3.86
4230 4433 1.360911 GCCGCTGCTCTAGGTAGTC 59.639 63.158 0.00 0.00 33.53 2.59
4231 4434 2.128507 GGCCGCTGCTCTAGGTAGT 61.129 63.158 0.00 0.00 37.74 2.73
4233 4436 1.676678 CTTGGCCGCTGCTCTAGGTA 61.677 60.000 0.00 0.00 37.74 3.08
4250 4462 3.879892 GAGCTTCACAAGTTCCAACTCTT 59.120 43.478 0.00 0.00 38.57 2.85
4269 4481 4.021925 AGACCACGGGCCAAGAGC 62.022 66.667 4.39 0.00 42.60 4.09
4270 4482 2.046892 CAGACCACGGGCCAAGAG 60.047 66.667 4.39 0.00 0.00 2.85
4295 4511 0.105760 TTGCTTCCAGCTGGGGAAAA 60.106 50.000 32.23 17.85 45.87 2.29
4296 4512 0.540365 CTTGCTTCCAGCTGGGGAAA 60.540 55.000 32.23 22.72 45.87 3.13
4303 4519 3.285371 GCATGCTTGCTTCCAGCT 58.715 55.556 16.80 0.00 45.77 4.24
4341 4557 0.249868 TTCTGATATTGCGGCCGGAG 60.250 55.000 29.38 11.51 0.00 4.63
4342 4558 0.249868 CTTCTGATATTGCGGCCGGA 60.250 55.000 29.38 24.35 0.00 5.14
4351 4567 5.793817 TGTGTGTGTGTAGCTTCTGATATT 58.206 37.500 0.00 0.00 0.00 1.28
4352 4568 5.405935 TGTGTGTGTGTAGCTTCTGATAT 57.594 39.130 0.00 0.00 0.00 1.63
4354 4570 3.751479 TGTGTGTGTGTAGCTTCTGAT 57.249 42.857 0.00 0.00 0.00 2.90
4368 4584 2.899838 AACCGCGTGCATGTGTGT 60.900 55.556 17.79 12.21 0.00 3.72
4376 4592 3.649986 ACTGAAGCAACCGCGTGC 61.650 61.111 13.32 13.32 45.49 5.34
4377 4593 2.243957 TCACTGAAGCAACCGCGTG 61.244 57.895 4.92 0.00 45.49 5.34
4378 4594 2.108157 TCACTGAAGCAACCGCGT 59.892 55.556 4.92 0.00 45.49 6.01
4379 4595 1.771073 TTGTCACTGAAGCAACCGCG 61.771 55.000 0.00 0.00 45.49 6.46
4380 4596 0.380378 TTTGTCACTGAAGCAACCGC 59.620 50.000 0.00 0.00 38.99 5.68
4381 4597 2.842208 TTTTGTCACTGAAGCAACCG 57.158 45.000 0.00 0.00 0.00 4.44
4399 4615 5.997746 TCGAGTGACCAAAGATGAGAATTTT 59.002 36.000 0.00 0.00 0.00 1.82
4401 4617 5.152623 TCGAGTGACCAAAGATGAGAATT 57.847 39.130 0.00 0.00 0.00 2.17
4403 4619 4.808414 ATCGAGTGACCAAAGATGAGAA 57.192 40.909 0.00 0.00 0.00 2.87
4404 4620 4.220602 TGAATCGAGTGACCAAAGATGAGA 59.779 41.667 0.00 0.00 0.00 3.27
4405 4621 4.498241 TGAATCGAGTGACCAAAGATGAG 58.502 43.478 0.00 0.00 0.00 2.90
4406 4622 4.535526 TGAATCGAGTGACCAAAGATGA 57.464 40.909 0.00 0.00 0.00 2.92
4407 4623 4.093998 CCTTGAATCGAGTGACCAAAGATG 59.906 45.833 0.00 0.00 0.00 2.90
4408 4624 4.020218 TCCTTGAATCGAGTGACCAAAGAT 60.020 41.667 0.00 0.00 0.00 2.40
4409 4625 3.323691 TCCTTGAATCGAGTGACCAAAGA 59.676 43.478 0.00 0.00 0.00 2.52
4410 4626 3.664107 TCCTTGAATCGAGTGACCAAAG 58.336 45.455 0.00 0.00 0.00 2.77
4412 4628 2.612972 GCTCCTTGAATCGAGTGACCAA 60.613 50.000 0.00 0.00 0.00 3.67
4422 4641 1.012841 CTTCTGCCGCTCCTTGAATC 58.987 55.000 0.00 0.00 0.00 2.52
4434 4653 1.805428 TTTGGGCGCTTTCTTCTGCC 61.805 55.000 7.64 0.00 46.82 4.85
4447 4666 2.936553 GCAAGATTTGGATGGTTTGGGC 60.937 50.000 0.00 0.00 0.00 5.36
4454 4673 1.203052 ACGCAAGCAAGATTTGGATGG 59.797 47.619 0.00 0.00 45.62 3.51
4457 4676 0.039256 GCACGCAAGCAAGATTTGGA 60.039 50.000 0.00 0.00 45.62 3.53
4458 4677 0.318869 TGCACGCAAGCAAGATTTGG 60.319 50.000 0.00 0.00 42.46 3.28
4459 4678 3.182538 TGCACGCAAGCAAGATTTG 57.817 47.368 0.00 0.00 42.46 2.32
4467 4686 3.422303 TCGGTCATGCACGCAAGC 61.422 61.111 0.00 0.00 45.62 4.01
4469 4688 2.030412 AGTCGGTCATGCACGCAA 59.970 55.556 0.00 0.00 0.00 4.85
4470 4689 2.738139 CAGTCGGTCATGCACGCA 60.738 61.111 0.00 0.00 0.00 5.24
4471 4690 4.152625 GCAGTCGGTCATGCACGC 62.153 66.667 0.00 1.11 42.11 5.34
4472 4691 3.490759 GGCAGTCGGTCATGCACG 61.491 66.667 0.00 2.93 44.37 5.34
4473 4692 3.127533 GGGCAGTCGGTCATGCAC 61.128 66.667 0.00 0.00 44.37 4.57
4474 4693 4.408821 GGGGCAGTCGGTCATGCA 62.409 66.667 0.00 0.00 44.37 3.96
4476 4695 4.082523 ACGGGGCAGTCGGTCATG 62.083 66.667 0.00 0.00 0.00 3.07
4477 4696 3.771160 GACGGGGCAGTCGGTCAT 61.771 66.667 0.00 0.00 37.09 3.06
4478 4697 4.988716 AGACGGGGCAGTCGGTCA 62.989 66.667 11.82 0.00 45.26 4.02
4479 4698 4.131088 GAGACGGGGCAGTCGGTC 62.131 72.222 6.69 0.32 45.26 4.79
4485 4704 4.933064 GATCGCGAGACGGGGCAG 62.933 72.222 16.66 0.00 46.97 4.85
4487 4706 4.933064 CTGATCGCGAGACGGGGC 62.933 72.222 16.66 0.00 46.97 5.80
4488 4707 2.076622 AATCTGATCGCGAGACGGGG 62.077 60.000 16.66 6.15 46.97 5.73
4489 4708 0.661780 GAATCTGATCGCGAGACGGG 60.662 60.000 16.66 8.46 46.97 5.28
4490 4709 0.309302 AGAATCTGATCGCGAGACGG 59.691 55.000 16.66 16.06 46.97 4.79
4491 4710 2.040524 GAAGAATCTGATCGCGAGACG 58.959 52.381 16.66 4.88 46.97 4.18
4492 4711 3.042189 CTGAAGAATCTGATCGCGAGAC 58.958 50.000 16.66 12.04 46.97 3.36
4493 4712 4.732064 GTTCTGAAGAATCTGATCGCGAGA 60.732 45.833 16.66 7.03 39.66 4.04
4494 4713 3.346430 TCTGAAGAATCTGATCGCGAG 57.654 47.619 16.66 0.16 0.00 5.03
4495 4714 3.129462 AGTTCTGAAGAATCTGATCGCGA 59.871 43.478 13.09 13.09 36.33 5.87
4496 4715 3.443037 AGTTCTGAAGAATCTGATCGCG 58.557 45.455 0.00 0.00 36.33 5.87
4497 4716 5.580297 AGAAAGTTCTGAAGAATCTGATCGC 59.420 40.000 0.00 0.00 35.89 4.58
4498 4717 7.462593 CGAAGAAAGTTCTGAAGAATCTGATCG 60.463 40.741 0.00 0.40 37.65 3.69
4499 4718 7.201513 CCGAAGAAAGTTCTGAAGAATCTGATC 60.202 40.741 0.00 0.00 37.65 2.92
4500 4719 6.593382 CCGAAGAAAGTTCTGAAGAATCTGAT 59.407 38.462 0.00 0.00 37.65 2.90
4501 4720 5.928839 CCGAAGAAAGTTCTGAAGAATCTGA 59.071 40.000 0.00 0.00 37.65 3.27
4502 4721 5.390356 GCCGAAGAAAGTTCTGAAGAATCTG 60.390 44.000 0.00 0.00 37.65 2.90
4503 4722 4.693095 GCCGAAGAAAGTTCTGAAGAATCT 59.307 41.667 0.00 0.00 37.65 2.40
4504 4723 4.693095 AGCCGAAGAAAGTTCTGAAGAATC 59.307 41.667 0.00 0.00 37.65 2.52
4505 4724 4.453819 CAGCCGAAGAAAGTTCTGAAGAAT 59.546 41.667 0.00 0.00 37.65 2.40
4506 4725 3.809832 CAGCCGAAGAAAGTTCTGAAGAA 59.190 43.478 0.00 0.00 37.65 2.52
4507 4726 3.069586 TCAGCCGAAGAAAGTTCTGAAGA 59.930 43.478 0.00 0.00 37.65 2.87
4508 4727 3.393800 TCAGCCGAAGAAAGTTCTGAAG 58.606 45.455 0.00 0.00 37.65 3.02
4509 4728 3.469008 TCAGCCGAAGAAAGTTCTGAA 57.531 42.857 0.00 0.00 37.65 3.02
4510 4729 3.469008 TTCAGCCGAAGAAAGTTCTGA 57.531 42.857 0.00 0.00 37.65 3.27
4521 4740 1.968017 CAAGCCAGCTTCAGCCGAA 60.968 57.895 0.90 0.00 43.38 4.30
4522 4741 1.826340 TACAAGCCAGCTTCAGCCGA 61.826 55.000 0.90 0.00 43.38 5.54
4523 4742 1.364626 CTACAAGCCAGCTTCAGCCG 61.365 60.000 0.90 0.00 43.38 5.52
4524 4743 0.322008 ACTACAAGCCAGCTTCAGCC 60.322 55.000 0.90 0.00 43.38 4.85
4525 4744 2.003301 GTACTACAAGCCAGCTTCAGC 58.997 52.381 0.90 0.00 42.49 4.26
4526 4745 3.601443 AGTACTACAAGCCAGCTTCAG 57.399 47.619 0.90 5.54 33.42 3.02
4527 4746 4.087182 ACTAGTACTACAAGCCAGCTTCA 58.913 43.478 0.90 0.00 33.42 3.02
4528 4747 4.722361 ACTAGTACTACAAGCCAGCTTC 57.278 45.455 0.90 0.00 33.42 3.86
4529 4748 5.262804 ACTACTAGTACTACAAGCCAGCTT 58.737 41.667 0.00 0.00 36.60 3.74
4530 4749 4.857679 ACTACTAGTACTACAAGCCAGCT 58.142 43.478 0.00 0.00 0.00 4.24
4531 4750 5.277925 GCTACTACTAGTACTACAAGCCAGC 60.278 48.000 0.00 7.96 0.00 4.85
4532 4751 6.056884 AGCTACTACTAGTACTACAAGCCAG 58.943 44.000 0.00 2.51 0.00 4.85
4533 4752 5.999044 AGCTACTACTAGTACTACAAGCCA 58.001 41.667 0.00 0.00 0.00 4.75
4534 4753 6.767423 AGAAGCTACTACTAGTACTACAAGCC 59.233 42.308 0.00 0.00 0.00 4.35
4535 4754 7.632721 CAGAAGCTACTACTAGTACTACAAGC 58.367 42.308 0.00 4.17 0.00 4.01
4536 4755 7.254863 GGCAGAAGCTACTACTAGTACTACAAG 60.255 44.444 0.00 2.08 41.70 3.16
4537 4756 6.541641 GGCAGAAGCTACTACTAGTACTACAA 59.458 42.308 0.00 0.00 41.70 2.41
4538 4757 6.054295 GGCAGAAGCTACTACTAGTACTACA 58.946 44.000 0.00 0.00 41.70 2.74
4539 4758 6.054295 TGGCAGAAGCTACTACTAGTACTAC 58.946 44.000 0.00 0.00 41.70 2.73
4540 4759 6.244552 TGGCAGAAGCTACTACTAGTACTA 57.755 41.667 1.89 1.89 41.70 1.82
4541 4760 5.113446 TGGCAGAAGCTACTACTAGTACT 57.887 43.478 0.00 0.00 41.70 2.73
4552 4771 2.047274 GGCGTGTGGCAGAAGCTA 60.047 61.111 20.60 0.00 46.16 3.32
4555 4774 2.954753 GAACGGCGTGTGGCAGAAG 61.955 63.158 15.70 0.00 46.16 2.85
4556 4775 2.933878 AAGAACGGCGTGTGGCAGAA 62.934 55.000 15.70 0.00 46.16 3.02
4557 4776 3.454587 AAGAACGGCGTGTGGCAGA 62.455 57.895 15.70 0.00 46.16 4.26
4558 4777 2.972505 AAGAACGGCGTGTGGCAG 60.973 61.111 15.70 0.00 46.16 4.85
4559 4778 3.276091 CAAGAACGGCGTGTGGCA 61.276 61.111 15.70 0.00 46.16 4.92
4560 4779 4.683334 GCAAGAACGGCGTGTGGC 62.683 66.667 15.70 10.09 42.51 5.01
4561 4780 2.128853 ATTGCAAGAACGGCGTGTGG 62.129 55.000 15.70 2.43 0.00 4.17
4562 4781 0.725784 GATTGCAAGAACGGCGTGTG 60.726 55.000 15.70 13.76 0.00 3.82
4563 4782 0.884704 AGATTGCAAGAACGGCGTGT 60.885 50.000 15.70 3.46 0.00 4.49
4564 4783 0.453282 CAGATTGCAAGAACGGCGTG 60.453 55.000 15.70 1.08 0.00 5.34
4565 4784 1.577328 CCAGATTGCAAGAACGGCGT 61.577 55.000 6.77 6.77 0.00 5.68
4566 4785 1.135315 CCAGATTGCAAGAACGGCG 59.865 57.895 4.80 4.80 0.00 6.46
4567 4786 1.153958 GCCAGATTGCAAGAACGGC 60.154 57.895 13.98 13.98 0.00 5.68
4568 4787 1.243342 TGGCCAGATTGCAAGAACGG 61.243 55.000 0.00 3.95 0.00 4.44
4569 4788 0.813184 ATGGCCAGATTGCAAGAACG 59.187 50.000 13.05 0.00 0.00 3.95
4570 4789 4.454728 TTTATGGCCAGATTGCAAGAAC 57.545 40.909 13.05 0.00 0.00 3.01
4571 4790 5.046448 ACATTTTATGGCCAGATTGCAAGAA 60.046 36.000 13.05 0.00 33.60 2.52
4572 4791 4.467082 ACATTTTATGGCCAGATTGCAAGA 59.533 37.500 13.05 0.00 33.60 3.02
4573 4792 4.761975 ACATTTTATGGCCAGATTGCAAG 58.238 39.130 13.05 0.00 33.60 4.01
4574 4793 4.677514 CGACATTTTATGGCCAGATTGCAA 60.678 41.667 13.05 0.00 33.66 4.08
4575 4794 3.181488 CGACATTTTATGGCCAGATTGCA 60.181 43.478 13.05 0.00 33.66 4.08
4576 4795 3.181487 ACGACATTTTATGGCCAGATTGC 60.181 43.478 13.05 1.48 33.66 3.56
4577 4796 4.353737 CACGACATTTTATGGCCAGATTG 58.646 43.478 13.05 7.75 33.66 2.67
4578 4797 3.181487 GCACGACATTTTATGGCCAGATT 60.181 43.478 13.05 0.00 33.66 2.40
4579 4798 2.358898 GCACGACATTTTATGGCCAGAT 59.641 45.455 13.05 0.00 33.66 2.90
4580 4799 1.742831 GCACGACATTTTATGGCCAGA 59.257 47.619 13.05 2.53 33.66 3.86
4581 4800 1.202290 GGCACGACATTTTATGGCCAG 60.202 52.381 13.05 0.00 39.66 4.85
4582 4801 0.814457 GGCACGACATTTTATGGCCA 59.186 50.000 8.56 8.56 39.66 5.36
4583 4802 1.065551 GAGGCACGACATTTTATGGCC 59.934 52.381 0.00 0.00 38.33 5.36
4584 4803 2.475200 GAGGCACGACATTTTATGGC 57.525 50.000 0.00 0.00 37.87 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.