Multiple sequence alignment - TraesCS1A01G307100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G307100 chr1A 100.000 3054 0 0 1 3054 498797721 498794668 0.000000e+00 5640.0
1 TraesCS1A01G307100 chr1A 83.148 1893 249 43 492 2336 498668498 498666628 0.000000e+00 1664.0
2 TraesCS1A01G307100 chr1A 77.446 1574 293 40 491 2016 30131993 30130434 0.000000e+00 883.0
3 TraesCS1A01G307100 chr1A 86.632 576 72 5 1638 2212 498599400 498598829 1.550000e-177 632.0
4 TraesCS1A01G307100 chr1A 80.882 272 41 7 449 717 498600929 498600666 1.440000e-48 204.0
5 TraesCS1A01G307100 chr1B 90.206 2522 208 22 4 2514 542768569 542766076 0.000000e+00 3253.0
6 TraesCS1A01G307100 chr1B 83.075 2068 272 48 492 2517 542715822 542713791 0.000000e+00 1808.0
7 TraesCS1A01G307100 chr1B 84.271 1475 199 20 743 2208 542582771 542581321 0.000000e+00 1408.0
8 TraesCS1A01G307100 chr1B 81.477 1760 266 35 505 2212 542726421 542724670 0.000000e+00 1389.0
9 TraesCS1A01G307100 chr1B 83.238 1229 171 21 452 1649 542762894 542761670 0.000000e+00 1096.0
10 TraesCS1A01G307100 chr1B 78.107 1384 252 33 668 2016 47626291 47624924 0.000000e+00 830.0
11 TraesCS1A01G307100 chr1B 78.176 1173 213 24 506 1649 542509870 542508712 0.000000e+00 708.0
12 TraesCS1A01G307100 chr1B 86.545 275 32 3 2101 2375 542760441 542760172 6.400000e-77 298.0
13 TraesCS1A01G307100 chr1B 88.306 248 28 1 2530 2776 542718802 542718555 2.300000e-76 296.0
14 TraesCS1A01G307100 chr1B 87.264 212 15 3 2697 2896 542765780 542765569 6.590000e-57 231.0
15 TraesCS1A01G307100 chr1B 91.139 158 6 1 2903 3052 542765514 542765357 1.110000e-49 207.0
16 TraesCS1A01G307100 chr1B 93.382 136 7 2 2524 2657 542765923 542765788 1.860000e-47 200.0
17 TraesCS1A01G307100 chr1B 80.515 272 42 7 449 717 542583108 542582845 6.680000e-47 198.0
18 TraesCS1A01G307100 chr1B 91.304 138 10 2 2903 3039 542718079 542717943 1.450000e-43 187.0
19 TraesCS1A01G307100 chr1B 87.805 82 7 2 2528 2609 542713694 542713616 3.240000e-15 93.5
20 TraesCS1A01G307100 chr1D 87.002 1931 205 31 482 2375 403518060 403516139 0.000000e+00 2134.0
21 TraesCS1A01G307100 chr1D 84.980 1478 195 19 749 2212 403338929 403337465 0.000000e+00 1474.0
22 TraesCS1A01G307100 chr1D 83.934 1525 211 22 876 2375 403550452 403548937 0.000000e+00 1428.0
23 TraesCS1A01G307100 chr1D 78.690 1633 288 39 491 2072 403377586 403375963 0.000000e+00 1033.0
24 TraesCS1A01G307100 chr1D 90.909 726 49 10 4 728 403554759 403554050 0.000000e+00 959.0
25 TraesCS1A01G307100 chr1D 77.230 1581 281 53 491 2016 30078101 30076545 0.000000e+00 852.0
26 TraesCS1A01G307100 chr1D 77.273 1386 268 35 665 2016 29812346 29813718 0.000000e+00 771.0
27 TraesCS1A01G307100 chr1D 85.891 567 70 5 1654 2212 403525277 403524713 2.030000e-166 595.0
28 TraesCS1A01G307100 chr1D 92.120 368 29 0 113 480 403518396 403518029 1.260000e-143 520.0
29 TraesCS1A01G307100 chr1D 81.072 597 94 9 506 1083 403529037 403528441 2.770000e-125 459.0
30 TraesCS1A01G307100 chr1D 82.353 272 37 7 449 717 403339272 403339009 3.060000e-55 226.0
31 TraesCS1A01G307100 chr1D 85.890 163 22 1 2527 2688 403524118 403523956 4.050000e-39 172.0
32 TraesCS1A01G307100 chr1D 89.535 86 9 0 2429 2514 403524288 403524203 3.220000e-20 110.0
33 TraesCS1A01G307100 chr1D 96.774 31 1 0 450 480 403554296 403554266 6.000000e-03 52.8
34 TraesCS1A01G307100 chr6B 81.997 1322 204 25 741 2053 117494780 117493484 0.000000e+00 1092.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G307100 chr1A 498794668 498797721 3053 True 5640.000000 5640 100.0000 1 3054 1 chr1A.!!$R3 3053
1 TraesCS1A01G307100 chr1A 498666628 498668498 1870 True 1664.000000 1664 83.1480 492 2336 1 chr1A.!!$R2 1844
2 TraesCS1A01G307100 chr1A 30130434 30131993 1559 True 883.000000 883 77.4460 491 2016 1 chr1A.!!$R1 1525
3 TraesCS1A01G307100 chr1A 498598829 498600929 2100 True 418.000000 632 83.7570 449 2212 2 chr1A.!!$R4 1763
4 TraesCS1A01G307100 chr1B 542724670 542726421 1751 True 1389.000000 1389 81.4770 505 2212 1 chr1B.!!$R3 1707
5 TraesCS1A01G307100 chr1B 542760172 542768569 8397 True 880.833333 3253 88.6290 4 3052 6 chr1B.!!$R6 3048
6 TraesCS1A01G307100 chr1B 47624924 47626291 1367 True 830.000000 830 78.1070 668 2016 1 chr1B.!!$R1 1348
7 TraesCS1A01G307100 chr1B 542581321 542583108 1787 True 803.000000 1408 82.3930 449 2208 2 chr1B.!!$R4 1759
8 TraesCS1A01G307100 chr1B 542508712 542509870 1158 True 708.000000 708 78.1760 506 1649 1 chr1B.!!$R2 1143
9 TraesCS1A01G307100 chr1B 542713616 542718802 5186 True 596.125000 1808 87.6225 492 3039 4 chr1B.!!$R5 2547
10 TraesCS1A01G307100 chr1D 403516139 403518396 2257 True 1327.000000 2134 89.5610 113 2375 2 chr1D.!!$R4 2262
11 TraesCS1A01G307100 chr1D 403375963 403377586 1623 True 1033.000000 1033 78.6900 491 2072 1 chr1D.!!$R2 1581
12 TraesCS1A01G307100 chr1D 30076545 30078101 1556 True 852.000000 852 77.2300 491 2016 1 chr1D.!!$R1 1525
13 TraesCS1A01G307100 chr1D 403337465 403339272 1807 True 850.000000 1474 83.6665 449 2212 2 chr1D.!!$R3 1763
14 TraesCS1A01G307100 chr1D 403548937 403554759 5822 True 813.266667 1428 90.5390 4 2375 3 chr1D.!!$R6 2371
15 TraesCS1A01G307100 chr1D 29812346 29813718 1372 False 771.000000 771 77.2730 665 2016 1 chr1D.!!$F1 1351
16 TraesCS1A01G307100 chr1D 403523956 403529037 5081 True 334.000000 595 85.5970 506 2688 4 chr1D.!!$R5 2182
17 TraesCS1A01G307100 chr6B 117493484 117494780 1296 True 1092.000000 1092 81.9970 741 2053 1 chr6B.!!$R1 1312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.551396 GGTCCCCAATCCCTCGATTT 59.449 55.0 0.0 0.0 36.54 2.17 F
1109 13108 0.236449 AGTTTACGCTTTTTCGCCGG 59.764 50.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1181 13186 0.036732 TGTGCCCACTGGATCAAGAC 59.963 55.0 3.42 0.0 0.00 3.01 R
2769 17928 0.033011 AGGAGTGTAGGACTGCCGAT 60.033 55.0 0.00 0.0 43.99 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 0.551396 GGTCCCCAATCCCTCGATTT 59.449 55.000 0.00 0.00 36.54 2.17
94 95 1.212935 CCTCGATTTGTTCCCCATCCT 59.787 52.381 0.00 0.00 0.00 3.24
102 103 2.297895 TTCCCCATCCTCCACCACG 61.298 63.158 0.00 0.00 0.00 4.94
487 488 1.745653 AGCGTCGATCTCACTGATGAA 59.254 47.619 0.00 0.00 35.14 2.57
488 489 2.164422 AGCGTCGATCTCACTGATGAAA 59.836 45.455 0.00 0.00 35.14 2.69
519 3010 0.870307 GCGTCGATCACATAAGCCGT 60.870 55.000 0.00 0.00 0.00 5.68
573 3064 1.140134 TTCTCCCCACCAAGGAAGGG 61.140 60.000 12.47 12.47 41.22 3.95
576 3067 3.589542 CCCACCAAGGAAGGGGCA 61.590 66.667 11.82 0.00 41.22 5.36
582 3073 3.570212 AAGGAAGGGGCACGCACT 61.570 61.111 0.00 0.00 46.88 4.40
622 3119 2.757917 GTCCGCTCTGGCTCTCCT 60.758 66.667 0.00 0.00 37.80 3.69
640 3137 1.303398 TCTCCTCTGAACCTCGCGT 60.303 57.895 5.77 0.00 0.00 6.01
642 3139 0.809385 CTCCTCTGAACCTCGCGTTA 59.191 55.000 5.77 0.00 33.74 3.18
798 6850 2.494073 CAACCTAGAGGAGTTCGAGCTT 59.506 50.000 2.39 0.00 38.94 3.74
874 6935 0.952010 GTTCCGCTTTTCGCCCACTA 60.952 55.000 0.00 0.00 36.73 2.74
887 6948 2.890474 CACTATCCGCGTGGCCAC 60.890 66.667 26.78 26.78 34.14 5.01
961 7035 2.350514 GCCTCAAGCAGCTGACCT 59.649 61.111 20.43 2.30 42.97 3.85
1058 12397 4.751098 GCTGATGAAAGTTTTTGGCATTGA 59.249 37.500 0.00 0.00 0.00 2.57
1089 12428 3.758554 GCATCAGCTCCCAAACTCTTAAA 59.241 43.478 0.00 0.00 37.91 1.52
1096 13095 7.012989 TCAGCTCCCAAACTCTTAAAAGTTTAC 59.987 37.037 6.60 0.00 45.36 2.01
1109 13108 0.236449 AGTTTACGCTTTTTCGCCGG 59.764 50.000 0.00 0.00 0.00 6.13
1116 13118 2.978018 CTTTTTCGCCGGCTGGACC 61.978 63.158 26.68 0.00 37.49 4.46
1137 13142 3.571401 CCAGTCAAGGTCTCTTTTTGCAT 59.429 43.478 0.00 0.00 0.00 3.96
1181 13186 1.929836 GTGCCTTGAGAGATTGCTACG 59.070 52.381 0.00 0.00 0.00 3.51
1182 13187 1.550524 TGCCTTGAGAGATTGCTACGT 59.449 47.619 0.00 0.00 0.00 3.57
1192 13197 4.047822 GAGATTGCTACGTCTTGATCCAG 58.952 47.826 0.00 0.00 0.00 3.86
1193 13198 3.449018 AGATTGCTACGTCTTGATCCAGT 59.551 43.478 0.00 0.00 0.00 4.00
1204 13212 0.478072 TGATCCAGTGGGCACAAAGT 59.522 50.000 9.92 0.00 0.00 2.66
1219 13227 6.980397 GGGCACAAAGTCCATAAAGATAATTG 59.020 38.462 0.00 0.00 43.39 2.32
1220 13228 6.980397 GGCACAAAGTCCATAAAGATAATTGG 59.020 38.462 0.00 0.00 0.00 3.16
1221 13229 7.363793 GGCACAAAGTCCATAAAGATAATTGGT 60.364 37.037 0.00 0.00 0.00 3.67
1222 13230 7.489113 GCACAAAGTCCATAAAGATAATTGGTG 59.511 37.037 0.00 0.00 0.00 4.17
1263 13275 4.785346 ATTGGGTATGCTGTCTGAAGAT 57.215 40.909 0.00 0.00 0.00 2.40
1311 13327 2.880890 AGTTTTTCAGGTAGCAGCAGTG 59.119 45.455 0.00 0.00 0.00 3.66
1325 13347 1.675483 AGCAGTGTTCGTCAATTGCAA 59.325 42.857 0.00 0.00 39.66 4.08
1365 13403 7.011857 GTGCAGGCTATTATTCTTATATCTGCC 59.988 40.741 0.00 0.00 41.95 4.85
1401 13450 4.510038 AATGATTGCTGTCAGTTTGACC 57.490 40.909 6.74 0.00 46.40 4.02
1551 13611 8.751335 CATAGTTGTTTGCGTTAAATTTCAGTT 58.249 29.630 0.00 0.00 0.00 3.16
1660 15714 4.878397 CAGTTCAAGTCATGGGAGGTTATC 59.122 45.833 0.00 0.00 0.00 1.75
1674 15945 5.238583 GGAGGTTATCAATAATGTCCGGAG 58.761 45.833 3.06 0.00 0.00 4.63
1675 15946 5.221661 GGAGGTTATCAATAATGTCCGGAGT 60.222 44.000 3.06 0.00 0.00 3.85
1681 15952 9.436957 GTTATCAATAATGTCCGGAGTTATGAT 57.563 33.333 18.08 20.21 0.00 2.45
1701 15972 3.085952 TCCACTGGACCCAATTGAATC 57.914 47.619 7.12 3.68 0.00 2.52
1839 16111 2.437716 ATTGCCTTACCACCGCCG 60.438 61.111 0.00 0.00 0.00 6.46
1858 16130 1.131126 CGGCACAGATGGTTTGCTAAG 59.869 52.381 0.00 0.00 36.46 2.18
1926 16198 5.716094 TCAAATTGAAATGAGATGTGGCAG 58.284 37.500 0.00 0.00 0.00 4.85
1928 16200 4.978083 ATTGAAATGAGATGTGGCAGTC 57.022 40.909 0.00 0.00 0.00 3.51
1947 16219 4.686091 CAGTCACGAGTATTTCACACACAT 59.314 41.667 0.00 0.00 0.00 3.21
1953 16225 4.641954 GAGTATTTCACACACATCAAGCG 58.358 43.478 0.00 0.00 0.00 4.68
1972 16244 2.747446 GCGTACCCATGATTTGTCAACT 59.253 45.455 0.00 0.00 0.00 3.16
2038 16310 1.611491 GAGAAGGGTCTAGGAGATGCG 59.389 57.143 0.00 0.00 32.80 4.73
2054 16326 7.057894 AGGAGATGCGGTATACCAAATTTAAA 58.942 34.615 21.76 0.00 35.14 1.52
2061 16333 9.175312 TGCGGTATACCAAATTTAAATAGAACA 57.825 29.630 21.76 0.00 35.14 3.18
2131 16941 4.213564 AGCCTTTCTCTGATGTAGTTGG 57.786 45.455 0.00 0.00 0.00 3.77
2140 16950 1.064758 TGATGTAGTTGGTGCCCATCC 60.065 52.381 0.00 0.00 32.78 3.51
2208 17027 2.494059 CCTATAATGTTGTCCCAGCCG 58.506 52.381 0.00 0.00 0.00 5.52
2223 17160 2.866762 CCAGCCGTCTACTTCATTTAGC 59.133 50.000 0.00 0.00 0.00 3.09
2224 17161 3.521560 CAGCCGTCTACTTCATTTAGCA 58.478 45.455 0.00 0.00 0.00 3.49
2279 17216 3.324207 GACAAAGGAGGTGGTGTCC 57.676 57.895 0.00 0.00 35.42 4.02
2338 17275 2.954316 TCTGTTCTATCGCGCTTGAAA 58.046 42.857 5.56 0.16 0.00 2.69
2343 17280 0.719465 CTATCGCGCTTGAAACGGTT 59.281 50.000 5.56 0.00 0.00 4.44
2344 17281 0.717224 TATCGCGCTTGAAACGGTTC 59.283 50.000 6.16 6.16 0.00 3.62
2345 17282 1.225376 ATCGCGCTTGAAACGGTTCA 61.225 50.000 12.93 12.93 42.12 3.18
2352 17289 3.181530 CGCTTGAAACGGTTCATCAGTAG 60.182 47.826 18.16 12.00 43.29 2.57
2374 17311 9.931210 AGTAGTTTATTTTATGTTCTATTGCGC 57.069 29.630 0.00 0.00 0.00 6.09
2375 17312 9.166126 GTAGTTTATTTTATGTTCTATTGCGCC 57.834 33.333 4.18 0.00 0.00 6.53
2377 17314 9.116067 AGTTTATTTTATGTTCTATTGCGCCTA 57.884 29.630 4.18 0.00 0.00 3.93
2393 17330 1.340114 GCCTAAAGGGGTTCCTCAGTG 60.340 57.143 0.00 0.00 44.07 3.66
2426 17363 1.302366 TCTATTGCGCTTGGATGCTG 58.698 50.000 9.73 0.00 0.00 4.41
2441 17510 5.782047 TGGATGCTGGTTTTTAATCTGTTG 58.218 37.500 0.00 0.00 0.00 3.33
2451 17520 9.930693 TGGTTTTTAATCTGTTGTGTTTAGTTT 57.069 25.926 0.00 0.00 0.00 2.66
2463 17532 7.710044 TGTTGTGTTTAGTTTGTAATCCTCGTA 59.290 33.333 0.00 0.00 0.00 3.43
2475 17544 5.810587 TGTAATCCTCGTATCTTTGCTGTTC 59.189 40.000 0.00 0.00 0.00 3.18
2504 17573 6.513806 TGTATCGTAAGCTAGTAACACCAA 57.486 37.500 0.00 0.00 37.18 3.67
2506 17575 4.178545 TCGTAAGCTAGTAACACCAACC 57.821 45.455 0.00 0.00 37.18 3.77
2519 17588 6.958255 GTAACACCAACCGTTACTACATTTT 58.042 36.000 6.05 0.00 43.43 1.82
2560 17719 1.727335 GAAGTCGCAAAGCAGAGTACC 59.273 52.381 0.00 0.00 0.00 3.34
2561 17720 0.388649 AGTCGCAAAGCAGAGTACCG 60.389 55.000 0.00 0.00 0.00 4.02
2563 17722 2.740714 CGCAAAGCAGAGTACCGCC 61.741 63.158 0.00 0.00 0.00 6.13
2564 17723 1.376037 GCAAAGCAGAGTACCGCCT 60.376 57.895 0.00 0.00 0.00 5.52
2565 17724 1.362406 GCAAAGCAGAGTACCGCCTC 61.362 60.000 0.00 0.00 0.00 4.70
2566 17725 0.741221 CAAAGCAGAGTACCGCCTCC 60.741 60.000 0.00 0.00 31.53 4.30
2603 17762 7.124599 AGAGATCCATAAATTGGCATGAAAACA 59.875 33.333 0.00 0.00 46.01 2.83
2604 17763 7.043565 AGATCCATAAATTGGCATGAAAACAC 58.956 34.615 0.00 0.00 46.01 3.32
2609 17768 5.676532 AAATTGGCATGAAAACACATGTG 57.323 34.783 24.25 24.25 46.25 3.21
2610 17769 2.151881 TGGCATGAAAACACATGTGC 57.848 45.000 25.68 9.88 46.25 4.57
2615 17774 2.702898 TGAAAACACATGTGCGATGG 57.297 45.000 25.68 0.99 0.00 3.51
2616 17775 1.335780 TGAAAACACATGTGCGATGGC 60.336 47.619 25.68 10.81 40.52 4.40
2638 17797 6.001460 GGCAACAAATATACTACCCAGCATA 58.999 40.000 0.00 0.00 0.00 3.14
2639 17798 6.072673 GGCAACAAATATACTACCCAGCATAC 60.073 42.308 0.00 0.00 0.00 2.39
2657 17816 5.702670 AGCATACATCTTTTCGTATGGATGG 59.297 40.000 9.04 0.00 42.41 3.51
2661 17820 4.876107 ACATCTTTTCGTATGGATGGTGTC 59.124 41.667 0.00 0.00 39.61 3.67
2676 17835 2.230508 TGGTGTCCTGTGATAGTCGTTC 59.769 50.000 0.00 0.00 0.00 3.95
2677 17836 2.416972 GGTGTCCTGTGATAGTCGTTCC 60.417 54.545 0.00 0.00 0.00 3.62
2683 17842 4.768448 TCCTGTGATAGTCGTTCCTTTACA 59.232 41.667 0.00 0.00 0.00 2.41
2688 17847 5.005779 GTGATAGTCGTTCCTTTACATGCTG 59.994 44.000 0.00 0.00 0.00 4.41
2689 17848 3.678056 AGTCGTTCCTTTACATGCTGA 57.322 42.857 0.00 0.00 0.00 4.26
2690 17849 4.002906 AGTCGTTCCTTTACATGCTGAA 57.997 40.909 0.00 0.00 0.00 3.02
2691 17850 3.746492 AGTCGTTCCTTTACATGCTGAAC 59.254 43.478 0.00 0.00 33.66 3.18
2692 17851 3.746492 GTCGTTCCTTTACATGCTGAACT 59.254 43.478 0.00 0.00 34.58 3.01
2693 17852 4.213482 GTCGTTCCTTTACATGCTGAACTT 59.787 41.667 0.00 0.00 34.58 2.66
2694 17853 5.407387 GTCGTTCCTTTACATGCTGAACTTA 59.593 40.000 0.00 0.00 34.58 2.24
2695 17854 6.092259 GTCGTTCCTTTACATGCTGAACTTAT 59.908 38.462 0.00 0.00 34.58 1.73
2696 17855 6.653320 TCGTTCCTTTACATGCTGAACTTATT 59.347 34.615 0.00 0.00 34.58 1.40
2697 17856 7.174253 TCGTTCCTTTACATGCTGAACTTATTT 59.826 33.333 0.00 0.00 34.58 1.40
2698 17857 7.807907 CGTTCCTTTACATGCTGAACTTATTTT 59.192 33.333 0.00 0.00 34.58 1.82
2699 17858 8.915654 GTTCCTTTACATGCTGAACTTATTTTG 58.084 33.333 0.00 0.00 34.08 2.44
2700 17859 7.090173 TCCTTTACATGCTGAACTTATTTTGC 58.910 34.615 0.00 0.00 0.00 3.68
2701 17860 6.867816 CCTTTACATGCTGAACTTATTTTGCA 59.132 34.615 0.00 0.00 33.13 4.08
2702 17861 7.384660 CCTTTACATGCTGAACTTATTTTGCAA 59.615 33.333 0.00 0.00 32.61 4.08
2703 17862 8.830201 TTTACATGCTGAACTTATTTTGCAAT 57.170 26.923 0.00 0.00 32.61 3.56
2704 17863 8.830201 TTACATGCTGAACTTATTTTGCAATT 57.170 26.923 0.00 0.00 32.61 2.32
2705 17864 7.355332 ACATGCTGAACTTATTTTGCAATTC 57.645 32.000 0.00 0.08 32.61 2.17
2706 17865 7.156673 ACATGCTGAACTTATTTTGCAATTCT 58.843 30.769 0.00 0.00 32.61 2.40
2707 17866 8.306038 ACATGCTGAACTTATTTTGCAATTCTA 58.694 29.630 0.00 0.00 32.61 2.10
2708 17867 9.309516 CATGCTGAACTTATTTTGCAATTCTAT 57.690 29.630 0.00 0.00 32.61 1.98
2709 17868 9.880157 ATGCTGAACTTATTTTGCAATTCTATT 57.120 25.926 0.00 0.00 32.61 1.73
2710 17869 9.142515 TGCTGAACTTATTTTGCAATTCTATTG 57.857 29.630 0.00 0.00 0.00 1.90
2711 17870 9.143631 GCTGAACTTATTTTGCAATTCTATTGT 57.856 29.630 0.00 0.00 0.00 2.71
2718 17877 9.995003 TTATTTTGCAATTCTATTGTGAAACCT 57.005 25.926 0.00 0.00 34.36 3.50
2720 17879 9.995003 ATTTTGCAATTCTATTGTGAAACCTAA 57.005 25.926 0.00 0.00 34.36 2.69
2721 17880 9.474920 TTTTGCAATTCTATTGTGAAACCTAAG 57.525 29.630 0.00 0.00 34.36 2.18
2722 17881 7.759489 TGCAATTCTATTGTGAAACCTAAGT 57.241 32.000 0.00 0.00 34.36 2.24
2723 17882 7.816640 TGCAATTCTATTGTGAAACCTAAGTC 58.183 34.615 0.00 0.00 34.36 3.01
2724 17883 7.665559 TGCAATTCTATTGTGAAACCTAAGTCT 59.334 33.333 0.00 0.00 34.36 3.24
2725 17884 7.965107 GCAATTCTATTGTGAAACCTAAGTCTG 59.035 37.037 0.00 0.00 34.36 3.51
2726 17885 9.219603 CAATTCTATTGTGAAACCTAAGTCTGA 57.780 33.333 0.00 0.00 34.36 3.27
2727 17886 9.793259 AATTCTATTGTGAAACCTAAGTCTGAA 57.207 29.630 0.00 0.00 34.36 3.02
2728 17887 9.793259 ATTCTATTGTGAAACCTAAGTCTGAAA 57.207 29.630 0.00 0.00 34.36 2.69
2729 17888 8.603242 TCTATTGTGAAACCTAAGTCTGAAAC 57.397 34.615 0.00 0.00 34.36 2.78
2730 17889 5.728351 TTGTGAAACCTAAGTCTGAAACG 57.272 39.130 0.00 0.00 34.36 3.60
2731 17890 5.013568 TGTGAAACCTAAGTCTGAAACGA 57.986 39.130 0.00 0.00 34.36 3.85
2732 17891 4.807304 TGTGAAACCTAAGTCTGAAACGAC 59.193 41.667 0.00 0.00 34.36 4.34
2733 17892 5.048507 GTGAAACCTAAGTCTGAAACGACT 58.951 41.667 0.00 0.00 45.73 4.18
2734 17893 5.175308 GTGAAACCTAAGTCTGAAACGACTC 59.825 44.000 0.00 0.00 43.14 3.36
2735 17894 3.938289 ACCTAAGTCTGAAACGACTCC 57.062 47.619 0.00 0.00 43.14 3.85
2736 17895 2.561858 ACCTAAGTCTGAAACGACTCCC 59.438 50.000 0.00 0.00 43.14 4.30
2737 17896 2.561419 CCTAAGTCTGAAACGACTCCCA 59.439 50.000 0.00 0.00 43.14 4.37
2738 17897 2.821991 AAGTCTGAAACGACTCCCAG 57.178 50.000 0.00 0.00 43.14 4.45
2739 17898 1.705873 AGTCTGAAACGACTCCCAGT 58.294 50.000 0.00 0.00 40.04 4.00
2740 17899 1.614413 AGTCTGAAACGACTCCCAGTC 59.386 52.381 0.00 0.00 40.04 3.51
2741 17900 1.614413 GTCTGAAACGACTCCCAGTCT 59.386 52.381 2.32 0.00 42.92 3.24
2742 17901 2.818432 GTCTGAAACGACTCCCAGTCTA 59.182 50.000 2.32 0.00 42.92 2.59
2743 17902 2.818432 TCTGAAACGACTCCCAGTCTAC 59.182 50.000 2.32 0.00 42.92 2.59
2744 17903 1.891150 TGAAACGACTCCCAGTCTACC 59.109 52.381 2.32 0.00 42.92 3.18
2745 17904 1.891150 GAAACGACTCCCAGTCTACCA 59.109 52.381 2.32 0.00 42.92 3.25
2746 17905 1.254954 AACGACTCCCAGTCTACCAC 58.745 55.000 2.32 0.00 42.92 4.16
2747 17906 0.404812 ACGACTCCCAGTCTACCACT 59.595 55.000 2.32 0.00 42.92 4.00
2760 17919 6.611613 AGTCTACCACTGAAATGAGATTCA 57.388 37.500 0.00 0.00 37.70 2.57
2772 17931 8.189709 TGAAATGAGATTCAGTTAGTTGATCG 57.810 34.615 0.00 0.00 34.57 3.69
2773 17932 7.278646 TGAAATGAGATTCAGTTAGTTGATCGG 59.721 37.037 0.00 0.00 34.57 4.18
2774 17933 4.433615 TGAGATTCAGTTAGTTGATCGGC 58.566 43.478 0.00 0.00 0.00 5.54
2775 17934 4.081697 TGAGATTCAGTTAGTTGATCGGCA 60.082 41.667 0.00 0.00 0.00 5.69
2776 17935 4.437239 AGATTCAGTTAGTTGATCGGCAG 58.563 43.478 0.00 0.00 0.00 4.85
2777 17936 3.678056 TTCAGTTAGTTGATCGGCAGT 57.322 42.857 0.00 0.00 0.00 4.40
2778 17937 3.232213 TCAGTTAGTTGATCGGCAGTC 57.768 47.619 0.00 0.00 0.00 3.51
2779 17938 2.094182 TCAGTTAGTTGATCGGCAGTCC 60.094 50.000 0.00 0.00 0.00 3.85
2780 17939 2.093973 CAGTTAGTTGATCGGCAGTCCT 60.094 50.000 0.00 0.00 0.00 3.85
2781 17940 3.130516 CAGTTAGTTGATCGGCAGTCCTA 59.869 47.826 0.00 0.00 0.00 2.94
2782 17941 3.130693 AGTTAGTTGATCGGCAGTCCTAC 59.869 47.826 0.00 0.00 0.00 3.18
2783 17942 1.557099 AGTTGATCGGCAGTCCTACA 58.443 50.000 0.00 0.00 0.00 2.74
2784 17943 1.204941 AGTTGATCGGCAGTCCTACAC 59.795 52.381 0.00 0.00 0.00 2.90
2785 17944 1.204941 GTTGATCGGCAGTCCTACACT 59.795 52.381 0.00 0.00 34.67 3.55
2786 17945 1.103803 TGATCGGCAGTCCTACACTC 58.896 55.000 0.00 0.00 30.26 3.51
2787 17946 0.386113 GATCGGCAGTCCTACACTCC 59.614 60.000 0.00 0.00 30.26 3.85
2788 17947 0.033011 ATCGGCAGTCCTACACTCCT 60.033 55.000 0.00 0.00 30.26 3.69
2789 17948 0.680280 TCGGCAGTCCTACACTCCTC 60.680 60.000 0.00 0.00 30.26 3.71
2790 17949 1.668101 CGGCAGTCCTACACTCCTCC 61.668 65.000 0.00 0.00 30.26 4.30
2791 17950 1.331399 GGCAGTCCTACACTCCTCCC 61.331 65.000 0.00 0.00 30.26 4.30
2792 17951 0.614979 GCAGTCCTACACTCCTCCCA 60.615 60.000 0.00 0.00 30.26 4.37
2793 17952 1.938585 CAGTCCTACACTCCTCCCAA 58.061 55.000 0.00 0.00 30.26 4.12
2794 17953 1.827969 CAGTCCTACACTCCTCCCAAG 59.172 57.143 0.00 0.00 30.26 3.61
2795 17954 1.433592 AGTCCTACACTCCTCCCAAGT 59.566 52.381 0.00 0.00 0.00 3.16
2796 17955 2.158143 AGTCCTACACTCCTCCCAAGTT 60.158 50.000 0.00 0.00 0.00 2.66
2797 17956 2.234168 GTCCTACACTCCTCCCAAGTTC 59.766 54.545 0.00 0.00 0.00 3.01
2798 17957 2.111972 TCCTACACTCCTCCCAAGTTCT 59.888 50.000 0.00 0.00 0.00 3.01
2799 17958 2.234908 CCTACACTCCTCCCAAGTTCTG 59.765 54.545 0.00 0.00 0.00 3.02
2800 17959 2.103153 ACACTCCTCCCAAGTTCTGA 57.897 50.000 0.00 0.00 0.00 3.27
2801 17960 2.408565 ACACTCCTCCCAAGTTCTGAA 58.591 47.619 0.00 0.00 0.00 3.02
2802 17961 2.777692 ACACTCCTCCCAAGTTCTGAAA 59.222 45.455 0.00 0.00 0.00 2.69
2803 17962 3.202151 ACACTCCTCCCAAGTTCTGAAAA 59.798 43.478 0.00 0.00 0.00 2.29
2804 17963 4.141158 ACACTCCTCCCAAGTTCTGAAAAT 60.141 41.667 0.00 0.00 0.00 1.82
2805 17964 4.217118 CACTCCTCCCAAGTTCTGAAAATG 59.783 45.833 0.00 0.00 0.00 2.32
2806 17965 4.104738 ACTCCTCCCAAGTTCTGAAAATGA 59.895 41.667 0.00 0.00 0.00 2.57
2807 17966 4.398319 TCCTCCCAAGTTCTGAAAATGAC 58.602 43.478 0.00 0.00 0.00 3.06
2808 17967 4.141274 TCCTCCCAAGTTCTGAAAATGACA 60.141 41.667 0.00 0.00 0.00 3.58
2809 17968 4.217118 CCTCCCAAGTTCTGAAAATGACAG 59.783 45.833 0.00 0.00 36.80 3.51
2810 17969 4.792068 TCCCAAGTTCTGAAAATGACAGT 58.208 39.130 0.00 0.00 36.81 3.55
2811 17970 4.821805 TCCCAAGTTCTGAAAATGACAGTC 59.178 41.667 0.00 0.00 36.81 3.51
2812 17971 4.022849 CCCAAGTTCTGAAAATGACAGTCC 60.023 45.833 0.00 0.00 36.81 3.85
2813 17972 4.580167 CCAAGTTCTGAAAATGACAGTCCA 59.420 41.667 0.00 0.00 36.81 4.02
2814 17973 5.278169 CCAAGTTCTGAAAATGACAGTCCAG 60.278 44.000 0.00 0.00 36.81 3.86
2815 17974 5.041191 AGTTCTGAAAATGACAGTCCAGT 57.959 39.130 0.00 0.00 36.81 4.00
2816 17975 6.174720 AGTTCTGAAAATGACAGTCCAGTA 57.825 37.500 0.00 0.00 36.81 2.74
2817 17976 6.591935 AGTTCTGAAAATGACAGTCCAGTAA 58.408 36.000 0.00 0.00 36.81 2.24
2818 17977 6.708054 AGTTCTGAAAATGACAGTCCAGTAAG 59.292 38.462 0.00 0.00 36.81 2.34
2819 17978 5.551233 TCTGAAAATGACAGTCCAGTAAGG 58.449 41.667 0.00 0.00 36.81 2.69
2820 17979 5.071788 TCTGAAAATGACAGTCCAGTAAGGT 59.928 40.000 0.00 0.00 36.81 3.50
2821 17980 6.269077 TCTGAAAATGACAGTCCAGTAAGGTA 59.731 38.462 0.00 0.00 36.81 3.08
2822 17981 6.228258 TGAAAATGACAGTCCAGTAAGGTAC 58.772 40.000 0.00 0.00 39.02 3.34
2823 17982 5.818678 AAATGACAGTCCAGTAAGGTACA 57.181 39.130 0.00 0.00 39.02 2.90
2824 17983 5.818678 AATGACAGTCCAGTAAGGTACAA 57.181 39.130 0.00 0.00 39.02 2.41
2825 17984 4.595762 TGACAGTCCAGTAAGGTACAAC 57.404 45.455 0.00 0.00 39.02 3.32
2826 17985 3.322828 TGACAGTCCAGTAAGGTACAACC 59.677 47.826 0.00 0.00 38.99 3.77
2827 17986 3.311091 ACAGTCCAGTAAGGTACAACCA 58.689 45.455 0.00 0.00 41.95 3.67
2828 17987 3.908103 ACAGTCCAGTAAGGTACAACCAT 59.092 43.478 0.00 0.00 41.95 3.55
2829 17988 4.020485 ACAGTCCAGTAAGGTACAACCATC 60.020 45.833 0.00 0.00 41.95 3.51
2830 17989 4.020573 CAGTCCAGTAAGGTACAACCATCA 60.021 45.833 0.00 0.00 41.95 3.07
2831 17990 4.020485 AGTCCAGTAAGGTACAACCATCAC 60.020 45.833 0.00 0.00 41.95 3.06
2832 17991 3.262405 TCCAGTAAGGTACAACCATCACC 59.738 47.826 0.00 0.00 41.95 4.02
2833 17992 3.263425 CCAGTAAGGTACAACCATCACCT 59.737 47.826 0.00 0.00 44.66 4.00
2839 17998 5.836024 AGGTACAACCATCACCTTCTTAA 57.164 39.130 0.00 0.00 41.95 1.85
2840 17999 6.388619 AGGTACAACCATCACCTTCTTAAT 57.611 37.500 0.00 0.00 41.95 1.40
2841 18000 6.790319 AGGTACAACCATCACCTTCTTAATT 58.210 36.000 0.00 0.00 41.95 1.40
2842 18001 7.238710 AGGTACAACCATCACCTTCTTAATTT 58.761 34.615 0.00 0.00 41.95 1.82
2843 18002 8.387813 AGGTACAACCATCACCTTCTTAATTTA 58.612 33.333 0.00 0.00 41.95 1.40
2844 18003 9.185680 GGTACAACCATCACCTTCTTAATTTAT 57.814 33.333 0.00 0.00 38.42 1.40
2847 18006 8.531146 ACAACCATCACCTTCTTAATTTATTGG 58.469 33.333 0.00 0.00 0.00 3.16
2848 18007 8.748412 CAACCATCACCTTCTTAATTTATTGGA 58.252 33.333 0.00 0.00 0.00 3.53
2849 18008 8.525290 ACCATCACCTTCTTAATTTATTGGAG 57.475 34.615 0.00 0.00 0.00 3.86
2850 18009 7.068716 ACCATCACCTTCTTAATTTATTGGAGC 59.931 37.037 0.00 0.00 0.00 4.70
2851 18010 7.068593 CCATCACCTTCTTAATTTATTGGAGCA 59.931 37.037 0.00 0.00 0.00 4.26
2852 18011 7.630242 TCACCTTCTTAATTTATTGGAGCAG 57.370 36.000 0.00 0.00 0.00 4.24
2853 18012 6.095440 TCACCTTCTTAATTTATTGGAGCAGC 59.905 38.462 0.00 0.00 0.00 5.25
2854 18013 5.951747 ACCTTCTTAATTTATTGGAGCAGCA 59.048 36.000 0.00 0.00 0.00 4.41
2855 18014 6.096001 ACCTTCTTAATTTATTGGAGCAGCAG 59.904 38.462 0.00 0.00 0.00 4.24
2856 18015 5.505173 TCTTAATTTATTGGAGCAGCAGC 57.495 39.130 0.00 0.00 42.56 5.25
2876 18035 7.498070 GCAGCTGCTGTAAGTTTTAATTAAG 57.502 36.000 31.33 0.00 38.21 1.85
2877 18036 7.305474 GCAGCTGCTGTAAGTTTTAATTAAGA 58.695 34.615 31.33 0.00 38.21 2.10
2878 18037 7.807907 GCAGCTGCTGTAAGTTTTAATTAAGAA 59.192 33.333 31.33 0.00 38.21 2.52
2879 18038 9.677567 CAGCTGCTGTAAGTTTTAATTAAGAAA 57.322 29.630 21.21 0.00 35.30 2.52
2880 18039 9.678941 AGCTGCTGTAAGTTTTAATTAAGAAAC 57.321 29.630 0.00 5.09 36.31 2.78
2881 18040 8.912658 GCTGCTGTAAGTTTTAATTAAGAAACC 58.087 33.333 8.50 0.00 36.63 3.27
2883 18042 9.959749 TGCTGTAAGTTTTAATTAAGAAACCTG 57.040 29.630 8.50 1.97 36.63 4.00
2884 18043 9.406828 GCTGTAAGTTTTAATTAAGAAACCTGG 57.593 33.333 8.50 0.00 36.63 4.45
2896 18055 9.733556 AATTAAGAAACCTGGAAAAACAGTTTT 57.266 25.926 5.37 5.37 39.70 2.43
2900 18059 8.942338 AGAAACCTGGAAAAACAGTTTTAATC 57.058 30.769 11.76 6.78 37.07 1.75
2901 18060 8.536175 AGAAACCTGGAAAAACAGTTTTAATCA 58.464 29.630 11.76 9.33 37.07 2.57
2902 18061 9.157104 GAAACCTGGAAAAACAGTTTTAATCAA 57.843 29.630 11.76 0.04 37.07 2.57
2903 18062 8.716646 AACCTGGAAAAACAGTTTTAATCAAG 57.283 30.769 11.76 9.26 37.07 3.02
2904 18063 8.073467 ACCTGGAAAAACAGTTTTAATCAAGA 57.927 30.769 11.76 0.00 37.07 3.02
2905 18064 8.704668 ACCTGGAAAAACAGTTTTAATCAAGAT 58.295 29.630 11.76 0.00 37.07 2.40
2915 18074 9.778741 ACAGTTTTAATCAAGATACAACTCAGA 57.221 29.630 0.00 0.00 0.00 3.27
2922 18081 7.692460 ATCAAGATACAACTCAGAATTTGCA 57.308 32.000 0.00 0.00 0.00 4.08
2923 18082 7.137490 TCAAGATACAACTCAGAATTTGCAG 57.863 36.000 0.00 0.00 0.00 4.41
2924 18083 5.557891 AGATACAACTCAGAATTTGCAGC 57.442 39.130 0.00 0.00 0.00 5.25
2925 18084 5.005740 AGATACAACTCAGAATTTGCAGCA 58.994 37.500 0.00 0.00 0.00 4.41
2926 18085 3.637998 ACAACTCAGAATTTGCAGCAG 57.362 42.857 0.00 0.00 0.00 4.24
2927 18086 2.954318 ACAACTCAGAATTTGCAGCAGT 59.046 40.909 0.00 0.00 0.00 4.40
2928 18087 3.004106 ACAACTCAGAATTTGCAGCAGTC 59.996 43.478 0.00 0.00 0.00 3.51
2929 18088 3.137446 ACTCAGAATTTGCAGCAGTCT 57.863 42.857 0.00 0.00 0.00 3.24
2930 18089 4.277515 ACTCAGAATTTGCAGCAGTCTA 57.722 40.909 0.00 0.00 0.00 2.59
2931 18090 4.841422 ACTCAGAATTTGCAGCAGTCTAT 58.159 39.130 0.00 0.00 0.00 1.98
2932 18091 5.251764 ACTCAGAATTTGCAGCAGTCTATT 58.748 37.500 0.00 0.00 0.00 1.73
2933 18092 6.409704 ACTCAGAATTTGCAGCAGTCTATTA 58.590 36.000 0.00 0.00 0.00 0.98
2934 18093 7.052873 ACTCAGAATTTGCAGCAGTCTATTAT 58.947 34.615 0.00 0.00 0.00 1.28
2935 18094 8.206867 ACTCAGAATTTGCAGCAGTCTATTATA 58.793 33.333 0.00 0.00 0.00 0.98
2936 18095 8.962884 TCAGAATTTGCAGCAGTCTATTATAA 57.037 30.769 0.00 0.00 0.00 0.98
2937 18096 9.565090 TCAGAATTTGCAGCAGTCTATTATAAT 57.435 29.630 2.97 2.97 0.00 1.28
2963 18122 9.778741 TTATTCTCAACTCAAGTCAGTTTATGT 57.221 29.630 0.00 0.00 34.17 2.29
2964 18123 8.682936 ATTCTCAACTCAAGTCAGTTTATGTT 57.317 30.769 0.00 0.00 34.17 2.71
2965 18124 9.778741 ATTCTCAACTCAAGTCAGTTTATGTTA 57.221 29.630 0.00 0.00 34.17 2.41
2966 18125 9.607988 TTCTCAACTCAAGTCAGTTTATGTTAA 57.392 29.630 0.00 0.00 34.17 2.01
2967 18126 9.042008 TCTCAACTCAAGTCAGTTTATGTTAAC 57.958 33.333 0.00 0.00 34.17 2.01
2968 18127 8.725405 TCAACTCAAGTCAGTTTATGTTAACA 57.275 30.769 11.41 11.41 34.17 2.41
2969 18128 9.168451 TCAACTCAAGTCAGTTTATGTTAACAA 57.832 29.630 13.23 0.00 34.17 2.83
2970 18129 9.438291 CAACTCAAGTCAGTTTATGTTAACAAG 57.562 33.333 13.23 3.09 34.17 3.16
2971 18130 8.732746 ACTCAAGTCAGTTTATGTTAACAAGT 57.267 30.769 13.23 3.74 0.00 3.16
2972 18131 8.612619 ACTCAAGTCAGTTTATGTTAACAAGTG 58.387 33.333 13.23 9.59 0.00 3.16
2973 18132 8.725405 TCAAGTCAGTTTATGTTAACAAGTGA 57.275 30.769 13.23 11.77 0.00 3.41
2974 18133 8.826710 TCAAGTCAGTTTATGTTAACAAGTGAG 58.173 33.333 13.23 4.16 31.88 3.51
2975 18134 7.730364 AGTCAGTTTATGTTAACAAGTGAGG 57.270 36.000 13.23 2.11 31.88 3.86
2976 18135 6.204882 AGTCAGTTTATGTTAACAAGTGAGGC 59.795 38.462 13.23 4.62 31.88 4.70
2977 18136 6.017440 GTCAGTTTATGTTAACAAGTGAGGCA 60.017 38.462 13.23 0.00 31.88 4.75
2978 18137 6.017440 TCAGTTTATGTTAACAAGTGAGGCAC 60.017 38.462 13.23 1.80 34.10 5.01
2979 18138 5.825679 AGTTTATGTTAACAAGTGAGGCACA 59.174 36.000 13.23 0.00 36.74 4.57
2989 18148 2.015736 GTGAGGCACACTACATCCTG 57.984 55.000 7.87 0.00 45.13 3.86
2990 18149 1.276421 GTGAGGCACACTACATCCTGT 59.724 52.381 7.87 0.00 45.13 4.00
2991 18150 1.977854 TGAGGCACACTACATCCTGTT 59.022 47.619 0.00 0.00 0.00 3.16
2992 18151 2.371841 TGAGGCACACTACATCCTGTTT 59.628 45.455 0.00 0.00 0.00 2.83
2993 18152 2.744202 GAGGCACACTACATCCTGTTTG 59.256 50.000 0.00 0.00 0.00 2.93
2994 18153 2.106511 AGGCACACTACATCCTGTTTGT 59.893 45.455 0.00 0.00 0.00 2.83
2995 18154 2.884639 GGCACACTACATCCTGTTTGTT 59.115 45.455 0.00 0.00 0.00 2.83
2996 18155 3.317993 GGCACACTACATCCTGTTTGTTT 59.682 43.478 0.00 0.00 0.00 2.83
2997 18156 4.517453 GGCACACTACATCCTGTTTGTTTA 59.483 41.667 0.00 0.00 0.00 2.01
2998 18157 5.449304 GCACACTACATCCTGTTTGTTTAC 58.551 41.667 0.00 0.00 0.00 2.01
2999 18158 5.562113 GCACACTACATCCTGTTTGTTTACC 60.562 44.000 0.00 0.00 0.00 2.85
3000 18159 5.048991 CACACTACATCCTGTTTGTTTACCC 60.049 44.000 0.00 0.00 0.00 3.69
3001 18160 5.067273 CACTACATCCTGTTTGTTTACCCA 58.933 41.667 0.00 0.00 0.00 4.51
3002 18161 5.710099 CACTACATCCTGTTTGTTTACCCAT 59.290 40.000 0.00 0.00 0.00 4.00
3003 18162 5.944007 ACTACATCCTGTTTGTTTACCCATC 59.056 40.000 0.00 0.00 0.00 3.51
3004 18163 4.086457 ACATCCTGTTTGTTTACCCATCC 58.914 43.478 0.00 0.00 0.00 3.51
3005 18164 4.202673 ACATCCTGTTTGTTTACCCATCCT 60.203 41.667 0.00 0.00 0.00 3.24
3006 18165 5.014755 ACATCCTGTTTGTTTACCCATCCTA 59.985 40.000 0.00 0.00 0.00 2.94
3007 18166 5.586155 TCCTGTTTGTTTACCCATCCTAA 57.414 39.130 0.00 0.00 0.00 2.69
3008 18167 6.147437 TCCTGTTTGTTTACCCATCCTAAT 57.853 37.500 0.00 0.00 0.00 1.73
3009 18168 7.273457 TCCTGTTTGTTTACCCATCCTAATA 57.727 36.000 0.00 0.00 0.00 0.98
3010 18169 7.878495 TCCTGTTTGTTTACCCATCCTAATAT 58.122 34.615 0.00 0.00 0.00 1.28
3011 18170 8.340757 TCCTGTTTGTTTACCCATCCTAATATT 58.659 33.333 0.00 0.00 0.00 1.28
3012 18171 8.413229 CCTGTTTGTTTACCCATCCTAATATTG 58.587 37.037 0.00 0.00 0.00 1.90
3013 18172 8.887264 TGTTTGTTTACCCATCCTAATATTGT 57.113 30.769 0.00 0.00 0.00 2.71
3014 18173 9.315363 TGTTTGTTTACCCATCCTAATATTGTT 57.685 29.630 0.00 0.00 0.00 2.83
3015 18174 9.581099 GTTTGTTTACCCATCCTAATATTGTTG 57.419 33.333 0.00 0.00 0.00 3.33
3016 18175 8.887264 TTGTTTACCCATCCTAATATTGTTGT 57.113 30.769 0.00 0.00 0.00 3.32
3017 18176 8.514330 TGTTTACCCATCCTAATATTGTTGTC 57.486 34.615 0.00 0.00 0.00 3.18
3018 18177 8.333235 TGTTTACCCATCCTAATATTGTTGTCT 58.667 33.333 0.00 0.00 0.00 3.41
3019 18178 8.621286 GTTTACCCATCCTAATATTGTTGTCTG 58.379 37.037 0.00 0.00 0.00 3.51
3020 18179 5.694995 ACCCATCCTAATATTGTTGTCTGG 58.305 41.667 0.00 0.00 0.00 3.86
3021 18180 5.193728 ACCCATCCTAATATTGTTGTCTGGT 59.806 40.000 0.00 0.00 0.00 4.00
3022 18181 6.129179 CCCATCCTAATATTGTTGTCTGGTT 58.871 40.000 0.00 0.00 0.00 3.67
3023 18182 6.607198 CCCATCCTAATATTGTTGTCTGGTTT 59.393 38.462 0.00 0.00 0.00 3.27
3024 18183 7.777910 CCCATCCTAATATTGTTGTCTGGTTTA 59.222 37.037 0.00 0.00 0.00 2.01
3025 18184 9.354673 CCATCCTAATATTGTTGTCTGGTTTAT 57.645 33.333 0.00 0.00 0.00 1.40
3027 18186 9.920946 ATCCTAATATTGTTGTCTGGTTTATGT 57.079 29.630 0.00 0.00 0.00 2.29
3033 18192 7.817418 ATTGTTGTCTGGTTTATGTACAAGT 57.183 32.000 0.00 0.00 31.19 3.16
3034 18193 6.612247 TGTTGTCTGGTTTATGTACAAGTG 57.388 37.500 0.00 0.00 31.19 3.16
3035 18194 5.008217 TGTTGTCTGGTTTATGTACAAGTGC 59.992 40.000 0.00 0.00 31.19 4.40
3036 18195 4.968259 TGTCTGGTTTATGTACAAGTGCT 58.032 39.130 0.00 0.00 0.00 4.40
3037 18196 4.754618 TGTCTGGTTTATGTACAAGTGCTG 59.245 41.667 0.00 0.00 0.00 4.41
3038 18197 4.755123 GTCTGGTTTATGTACAAGTGCTGT 59.245 41.667 0.00 0.00 42.47 4.40
3039 18198 4.754618 TCTGGTTTATGTACAAGTGCTGTG 59.245 41.667 0.00 0.00 39.20 3.66
3040 18199 4.456535 TGGTTTATGTACAAGTGCTGTGT 58.543 39.130 0.00 0.00 39.20 3.72
3041 18200 4.513692 TGGTTTATGTACAAGTGCTGTGTC 59.486 41.667 0.00 0.00 39.20 3.67
3042 18201 4.513692 GGTTTATGTACAAGTGCTGTGTCA 59.486 41.667 0.00 0.00 39.20 3.58
3043 18202 5.008217 GGTTTATGTACAAGTGCTGTGTCAA 59.992 40.000 0.00 0.00 39.20 3.18
3044 18203 5.666969 TTATGTACAAGTGCTGTGTCAAC 57.333 39.130 0.00 0.00 39.20 3.18
3045 18204 3.260475 TGTACAAGTGCTGTGTCAACT 57.740 42.857 0.00 0.00 39.20 3.16
3046 18205 2.935849 TGTACAAGTGCTGTGTCAACTG 59.064 45.455 0.00 0.00 39.20 3.16
3047 18206 2.401583 ACAAGTGCTGTGTCAACTGA 57.598 45.000 0.00 0.00 36.69 3.41
3048 18207 2.283298 ACAAGTGCTGTGTCAACTGAG 58.717 47.619 0.00 0.00 36.69 3.35
3049 18208 1.003116 CAAGTGCTGTGTCAACTGAGC 60.003 52.381 0.00 0.00 0.00 4.26
3050 18209 0.178767 AGTGCTGTGTCAACTGAGCA 59.821 50.000 0.00 0.00 39.11 4.26
3051 18210 1.202734 AGTGCTGTGTCAACTGAGCAT 60.203 47.619 0.00 0.00 43.07 3.79
3052 18211 1.069432 GTGCTGTGTCAACTGAGCATG 60.069 52.381 0.00 0.00 43.07 4.06
3053 18212 0.520404 GCTGTGTCAACTGAGCATGG 59.480 55.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.801873 CCAAATAAATCAACGGTTTAGATTGAT 57.198 29.630 7.07 3.55 43.29 2.57
1 2 9.015367 TCCAAATAAATCAACGGTTTAGATTGA 57.985 29.630 7.07 1.61 36.81 2.57
2 3 9.072294 GTCCAAATAAATCAACGGTTTAGATTG 57.928 33.333 7.07 0.00 32.69 2.67
82 83 1.151699 TGGTGGAGGATGGGGAACA 60.152 57.895 0.00 0.00 0.00 3.18
94 95 1.373435 GTGGGAATGTCGTGGTGGA 59.627 57.895 0.00 0.00 0.00 4.02
102 103 2.700773 GGCGGCTTGTGGGAATGTC 61.701 63.158 0.00 0.00 0.00 3.06
447 448 1.134128 TCCCCACATCAACATCATCGG 60.134 52.381 0.00 0.00 0.00 4.18
487 488 1.153168 CGACGCTCCCCCATCAATT 60.153 57.895 0.00 0.00 0.00 2.32
488 489 1.410850 ATCGACGCTCCCCCATCAAT 61.411 55.000 0.00 0.00 0.00 2.57
537 3028 1.342819 AGAAGAGATACGATGCTGCCC 59.657 52.381 0.00 0.00 0.00 5.36
576 3067 2.581354 GAGATGGCCTGAGTGCGT 59.419 61.111 3.32 0.00 0.00 5.24
617 3114 1.065053 CGAGGTTCAGAGGAGAGGAGA 60.065 57.143 0.00 0.00 0.00 3.71
622 3119 0.894184 AACGCGAGGTTCAGAGGAGA 60.894 55.000 15.93 0.00 31.79 3.71
640 3137 1.483415 GCTATTGGGTCCACGGTCTAA 59.517 52.381 0.00 0.00 0.00 2.10
642 3139 0.907704 TGCTATTGGGTCCACGGTCT 60.908 55.000 0.00 0.00 0.00 3.85
798 6850 0.542467 TGCCCCAGAACGTGTAGGTA 60.542 55.000 0.00 0.00 0.00 3.08
874 6935 1.966901 TAGAATGTGGCCACGCGGAT 61.967 55.000 30.07 15.72 0.00 4.18
887 6948 2.222027 GGAAATGGGAGCCGTAGAATG 58.778 52.381 0.00 0.00 0.00 2.67
961 7035 1.003118 CGAGATGGTGACCCTTTCCAA 59.997 52.381 0.00 0.00 34.80 3.53
997 12336 3.210528 GCAGCCAGAGAGCATGCC 61.211 66.667 15.66 6.03 33.53 4.40
1040 12379 3.740321 GCGATCAATGCCAAAAACTTTCA 59.260 39.130 0.00 0.00 0.00 2.69
1058 12397 1.099879 GGAGCTGATGCAAAGGCGAT 61.100 55.000 0.00 0.00 45.35 4.58
1065 12404 1.074405 AGAGTTTGGGAGCTGATGCAA 59.926 47.619 0.00 0.00 42.74 4.08
1089 12428 1.334329 CCGGCGAAAAAGCGTAAACTT 60.334 47.619 9.30 0.00 38.18 2.66
1096 13095 4.759096 CCAGCCGGCGAAAAAGCG 62.759 66.667 23.20 3.02 38.18 4.68
1116 13118 4.276678 TCATGCAAAAAGAGACCTTGACTG 59.723 41.667 0.00 0.00 31.91 3.51
1120 13122 4.843220 ACTCATGCAAAAAGAGACCTTG 57.157 40.909 13.53 0.00 33.69 3.61
1137 13142 2.094182 GGCGTCCTCAATGACTAACTCA 60.094 50.000 0.00 0.00 32.97 3.41
1181 13186 0.036732 TGTGCCCACTGGATCAAGAC 59.963 55.000 3.42 0.00 0.00 3.01
1182 13187 0.770499 TTGTGCCCACTGGATCAAGA 59.230 50.000 3.42 0.00 0.00 3.02
1192 13197 3.153919 TCTTTATGGACTTTGTGCCCAC 58.846 45.455 0.00 0.00 32.07 4.61
1193 13198 3.517296 TCTTTATGGACTTTGTGCCCA 57.483 42.857 0.00 0.00 0.00 5.36
1204 13212 4.078922 TGCCCCACCAATTATCTTTATGGA 60.079 41.667 0.00 0.00 36.75 3.41
1220 13228 1.977009 GCCAGTTTAGGTGCCCCAC 60.977 63.158 0.00 0.00 0.00 4.61
1221 13229 2.438795 GCCAGTTTAGGTGCCCCA 59.561 61.111 0.00 0.00 0.00 4.96
1222 13230 2.552231 ATCGCCAGTTTAGGTGCCCC 62.552 60.000 0.00 0.00 39.04 5.80
1238 13247 4.257267 TCAGACAGCATACCCAATATCG 57.743 45.455 0.00 0.00 0.00 2.92
1325 13347 2.874701 GCCTGCACATAAGAATGTCGAT 59.125 45.455 0.00 0.00 44.70 3.59
1401 13450 2.610976 CCTCATGGTGTGCATTTTGGTG 60.611 50.000 0.00 0.00 0.00 4.17
1533 13588 7.757097 TGCTTAAACTGAAATTTAACGCAAA 57.243 28.000 0.00 0.00 36.44 3.68
1545 13605 5.851720 TGCCAATCAAATGCTTAAACTGAA 58.148 33.333 0.00 0.00 0.00 3.02
1551 13611 4.203654 TGCATGCCAATCAAATGCTTAA 57.796 36.364 16.68 0.00 45.51 1.85
1660 15714 6.147821 GTGGATCATAACTCCGGACATTATTG 59.852 42.308 0.00 3.92 35.41 1.90
1674 15945 3.644966 TTGGGTCCAGTGGATCATAAC 57.355 47.619 23.95 7.10 33.80 1.89
1675 15946 4.229353 TCAATTGGGTCCAGTGGATCATAA 59.771 41.667 23.95 17.48 33.80 1.90
1681 15952 2.291540 GGATTCAATTGGGTCCAGTGGA 60.292 50.000 8.12 8.12 0.00 4.02
1723 15994 4.454161 CCGTCATAATTCTTCAACACCACA 59.546 41.667 0.00 0.00 0.00 4.17
1839 16111 1.135286 GCTTAGCAAACCATCTGTGCC 60.135 52.381 0.00 0.00 39.13 5.01
1858 16130 0.654683 CTCGTAGCAGGCTGAATTGC 59.345 55.000 20.86 2.49 40.57 3.56
1926 16198 4.684242 TGATGTGTGTGAAATACTCGTGAC 59.316 41.667 0.00 0.00 0.00 3.67
1928 16200 5.590104 TTGATGTGTGTGAAATACTCGTG 57.410 39.130 0.00 0.00 0.00 4.35
1933 16205 4.404507 ACGCTTGATGTGTGTGAAATAC 57.595 40.909 0.00 0.00 38.09 1.89
1947 16219 3.006940 GACAAATCATGGGTACGCTTGA 58.993 45.455 24.47 24.47 0.00 3.02
1953 16225 4.142902 CGTCAGTTGACAAATCATGGGTAC 60.143 45.833 12.33 0.00 44.99 3.34
1972 16244 0.534203 GCAAGTCAAAGGGGTCGTCA 60.534 55.000 0.00 0.00 0.00 4.35
2002 16274 4.214332 CCCTTCTCTTTACACTTTGAGCAC 59.786 45.833 0.00 0.00 0.00 4.40
2054 16326 2.530460 TTGGCAGCCCAATGTTCTAT 57.470 45.000 9.64 0.00 46.01 1.98
2131 16941 2.827921 AGTCAATTTTCAGGATGGGCAC 59.172 45.455 0.00 0.00 36.16 5.01
2140 16950 6.757947 TGAAAAGAAGGCAAGTCAATTTTCAG 59.242 34.615 6.19 0.00 39.14 3.02
2208 17027 7.989826 ACATTCCATTGCTAAATGAAGTAGAC 58.010 34.615 10.00 0.00 45.17 2.59
2223 17160 2.224475 TGGGCCACAAAACATTCCATTG 60.224 45.455 0.00 0.00 0.00 2.82
2224 17161 2.053244 TGGGCCACAAAACATTCCATT 58.947 42.857 0.00 0.00 0.00 3.16
2299 17236 9.128107 AGAACAGAAAATACATTACGCAAATTG 57.872 29.630 0.00 0.00 0.00 2.32
2302 17239 9.982291 GATAGAACAGAAAATACATTACGCAAA 57.018 29.630 0.00 0.00 0.00 3.68
2338 17275 9.444600 ACATAAAATAAACTACTGATGAACCGT 57.555 29.630 0.00 0.00 0.00 4.83
2352 17289 9.724839 TTAGGCGCAATAGAACATAAAATAAAC 57.275 29.630 10.83 0.00 0.00 2.01
2361 17298 3.214328 CCCTTTAGGCGCAATAGAACAT 58.786 45.455 10.83 0.00 0.00 2.71
2368 17305 0.683179 GGAACCCCTTTAGGCGCAAT 60.683 55.000 10.83 0.00 0.00 3.56
2371 17308 1.451567 GAGGAACCCCTTTAGGCGC 60.452 63.158 0.00 0.00 44.53 6.53
2372 17309 0.107654 CTGAGGAACCCCTTTAGGCG 60.108 60.000 0.00 0.00 44.53 5.52
2373 17310 0.992695 ACTGAGGAACCCCTTTAGGC 59.007 55.000 0.00 0.00 44.53 3.93
2374 17311 1.282157 CCACTGAGGAACCCCTTTAGG 59.718 57.143 0.00 0.00 44.53 2.69
2375 17312 1.985895 ACCACTGAGGAACCCCTTTAG 59.014 52.381 0.00 0.00 44.53 1.85
2377 17314 1.231963 AACCACTGAGGAACCCCTTT 58.768 50.000 0.00 0.00 44.53 3.11
2393 17330 6.322491 AGCGCAATAGAACAGAAAATAAACC 58.678 36.000 11.47 0.00 0.00 3.27
2441 17510 8.699283 AGATACGAGGATTACAAACTAAACAC 57.301 34.615 0.00 0.00 0.00 3.32
2451 17520 5.339008 ACAGCAAAGATACGAGGATTACA 57.661 39.130 0.00 0.00 0.00 2.41
2463 17532 2.851195 ACAAGACCGAACAGCAAAGAT 58.149 42.857 0.00 0.00 0.00 2.40
2475 17544 4.548991 ACTAGCTTACGATACAAGACCG 57.451 45.455 0.00 0.00 0.00 4.79
2519 17588 9.391006 GACTTCCAGACCATACATGTATAAAAA 57.609 33.333 17.86 5.69 0.00 1.94
2521 17590 7.207383 CGACTTCCAGACCATACATGTATAAA 58.793 38.462 17.86 0.00 0.00 1.40
2523 17592 5.278808 GCGACTTCCAGACCATACATGTATA 60.279 44.000 17.86 0.00 0.00 1.47
2560 17719 1.070445 CTGCTTATGGGAGGAGGCG 59.930 63.158 0.00 0.00 32.11 5.52
2561 17720 0.396060 CTCTGCTTATGGGAGGAGGC 59.604 60.000 0.00 0.00 35.96 4.70
2563 17722 2.566724 GGATCTCTGCTTATGGGAGGAG 59.433 54.545 0.00 0.00 36.54 3.69
2564 17723 2.090550 TGGATCTCTGCTTATGGGAGGA 60.091 50.000 0.00 0.00 33.98 3.71
2565 17724 2.333069 TGGATCTCTGCTTATGGGAGG 58.667 52.381 0.00 0.00 33.98 4.30
2566 17725 5.752036 TTATGGATCTCTGCTTATGGGAG 57.248 43.478 0.00 0.00 34.52 4.30
2609 17768 4.083484 GGGTAGTATATTTGTTGCCATCGC 60.083 45.833 0.00 0.00 0.00 4.58
2610 17769 5.060506 TGGGTAGTATATTTGTTGCCATCG 58.939 41.667 0.00 0.00 0.00 3.84
2615 17774 6.485313 TGTATGCTGGGTAGTATATTTGTTGC 59.515 38.462 0.00 0.00 34.64 4.17
2616 17775 8.621532 ATGTATGCTGGGTAGTATATTTGTTG 57.378 34.615 0.00 0.00 34.64 3.33
2618 17777 8.207350 AGATGTATGCTGGGTAGTATATTTGT 57.793 34.615 0.00 0.00 34.64 2.83
2629 17788 3.350219 ACGAAAAGATGTATGCTGGGT 57.650 42.857 0.00 0.00 0.00 4.51
2630 17789 4.214119 CCATACGAAAAGATGTATGCTGGG 59.786 45.833 6.80 0.00 44.12 4.45
2631 17790 5.056480 TCCATACGAAAAGATGTATGCTGG 58.944 41.667 6.80 0.00 44.12 4.85
2638 17797 4.843728 ACACCATCCATACGAAAAGATGT 58.156 39.130 0.00 0.00 35.42 3.06
2639 17798 5.409643 GACACCATCCATACGAAAAGATG 57.590 43.478 0.00 0.00 36.66 2.90
2657 17816 2.492484 AGGAACGACTATCACAGGACAC 59.508 50.000 0.00 0.00 0.00 3.67
2661 17820 5.068234 TGTAAAGGAACGACTATCACAGG 57.932 43.478 0.00 0.00 0.00 4.00
2662 17821 5.005779 GCATGTAAAGGAACGACTATCACAG 59.994 44.000 0.00 0.00 0.00 3.66
2676 17835 6.867816 TGCAAAATAAGTTCAGCATGTAAAGG 59.132 34.615 0.00 0.00 37.40 3.11
2677 17836 7.872163 TGCAAAATAAGTTCAGCATGTAAAG 57.128 32.000 0.00 0.00 37.40 1.85
2683 17842 9.880157 AATAGAATTGCAAAATAAGTTCAGCAT 57.120 25.926 1.71 0.00 30.45 3.79
2692 17851 9.995003 AGGTTTCACAATAGAATTGCAAAATAA 57.005 25.926 1.71 0.00 0.00 1.40
2694 17853 9.995003 TTAGGTTTCACAATAGAATTGCAAAAT 57.005 25.926 1.71 0.00 0.00 1.82
2695 17854 9.474920 CTTAGGTTTCACAATAGAATTGCAAAA 57.525 29.630 1.71 0.00 0.00 2.44
2696 17855 8.637986 ACTTAGGTTTCACAATAGAATTGCAAA 58.362 29.630 1.71 0.00 0.00 3.68
2697 17856 8.177119 ACTTAGGTTTCACAATAGAATTGCAA 57.823 30.769 0.00 0.00 0.00 4.08
2698 17857 7.665559 AGACTTAGGTTTCACAATAGAATTGCA 59.334 33.333 0.00 0.00 0.00 4.08
2699 17858 7.965107 CAGACTTAGGTTTCACAATAGAATTGC 59.035 37.037 0.00 0.00 0.00 3.56
2700 17859 9.219603 TCAGACTTAGGTTTCACAATAGAATTG 57.780 33.333 0.00 0.00 0.00 2.32
2701 17860 9.793259 TTCAGACTTAGGTTTCACAATAGAATT 57.207 29.630 0.00 0.00 0.00 2.17
2702 17861 9.793259 TTTCAGACTTAGGTTTCACAATAGAAT 57.207 29.630 0.00 0.00 0.00 2.40
2703 17862 9.052759 GTTTCAGACTTAGGTTTCACAATAGAA 57.947 33.333 0.00 0.00 0.00 2.10
2704 17863 7.384115 CGTTTCAGACTTAGGTTTCACAATAGA 59.616 37.037 0.00 0.00 0.00 1.98
2705 17864 7.384115 TCGTTTCAGACTTAGGTTTCACAATAG 59.616 37.037 0.00 0.00 0.00 1.73
2706 17865 7.170320 GTCGTTTCAGACTTAGGTTTCACAATA 59.830 37.037 0.00 0.00 38.09 1.90
2707 17866 6.018180 GTCGTTTCAGACTTAGGTTTCACAAT 60.018 38.462 0.00 0.00 38.09 2.71
2708 17867 5.292589 GTCGTTTCAGACTTAGGTTTCACAA 59.707 40.000 0.00 0.00 38.09 3.33
2709 17868 4.807304 GTCGTTTCAGACTTAGGTTTCACA 59.193 41.667 0.00 0.00 38.09 3.58
2710 17869 5.326120 GTCGTTTCAGACTTAGGTTTCAC 57.674 43.478 0.00 0.00 38.09 3.18
2721 17880 2.067414 GACTGGGAGTCGTTTCAGAC 57.933 55.000 0.00 0.00 35.28 3.51
2737 17896 6.611613 TGAATCTCATTTCAGTGGTAGACT 57.388 37.500 0.00 0.00 32.07 3.24
2738 17897 6.900568 CTGAATCTCATTTCAGTGGTAGAC 57.099 41.667 6.12 0.00 44.90 2.59
2747 17906 7.278646 CCGATCAACTAACTGAATCTCATTTCA 59.721 37.037 0.00 0.00 34.55 2.69
2748 17907 7.625553 CCGATCAACTAACTGAATCTCATTTC 58.374 38.462 0.00 0.00 0.00 2.17
2749 17908 6.037610 GCCGATCAACTAACTGAATCTCATTT 59.962 38.462 0.00 0.00 0.00 2.32
2750 17909 5.525378 GCCGATCAACTAACTGAATCTCATT 59.475 40.000 0.00 0.00 0.00 2.57
2751 17910 5.053145 GCCGATCAACTAACTGAATCTCAT 58.947 41.667 0.00 0.00 0.00 2.90
2752 17911 4.081697 TGCCGATCAACTAACTGAATCTCA 60.082 41.667 0.00 0.00 0.00 3.27
2753 17912 4.433615 TGCCGATCAACTAACTGAATCTC 58.566 43.478 0.00 0.00 0.00 2.75
2754 17913 4.081420 ACTGCCGATCAACTAACTGAATCT 60.081 41.667 0.00 0.00 0.00 2.40
2755 17914 4.184629 ACTGCCGATCAACTAACTGAATC 58.815 43.478 0.00 0.00 0.00 2.52
2756 17915 4.184629 GACTGCCGATCAACTAACTGAAT 58.815 43.478 0.00 0.00 0.00 2.57
2757 17916 3.585862 GACTGCCGATCAACTAACTGAA 58.414 45.455 0.00 0.00 0.00 3.02
2758 17917 2.094182 GGACTGCCGATCAACTAACTGA 60.094 50.000 0.00 0.00 0.00 3.41
2759 17918 2.093973 AGGACTGCCGATCAACTAACTG 60.094 50.000 0.00 0.00 39.96 3.16
2760 17919 2.180276 AGGACTGCCGATCAACTAACT 58.820 47.619 0.00 0.00 39.96 2.24
2761 17920 2.674796 AGGACTGCCGATCAACTAAC 57.325 50.000 0.00 0.00 39.96 2.34
2762 17921 3.093814 TGTAGGACTGCCGATCAACTAA 58.906 45.455 0.00 0.00 39.96 2.24
2763 17922 2.426024 GTGTAGGACTGCCGATCAACTA 59.574 50.000 0.00 0.00 39.96 2.24
2764 17923 1.204941 GTGTAGGACTGCCGATCAACT 59.795 52.381 0.00 0.00 39.96 3.16
2765 17924 1.204941 AGTGTAGGACTGCCGATCAAC 59.795 52.381 0.00 0.00 39.96 3.18
2766 17925 1.476891 GAGTGTAGGACTGCCGATCAA 59.523 52.381 0.00 0.00 39.96 2.57
2767 17926 1.103803 GAGTGTAGGACTGCCGATCA 58.896 55.000 0.00 0.00 39.96 2.92
2768 17927 0.386113 GGAGTGTAGGACTGCCGATC 59.614 60.000 0.00 0.00 37.05 3.69
2769 17928 0.033011 AGGAGTGTAGGACTGCCGAT 60.033 55.000 0.00 0.00 43.99 4.18
2770 17929 0.680280 GAGGAGTGTAGGACTGCCGA 60.680 60.000 0.00 0.00 43.99 5.54
2771 17930 1.668101 GGAGGAGTGTAGGACTGCCG 61.668 65.000 0.00 0.00 43.99 5.69
2772 17931 1.331399 GGGAGGAGTGTAGGACTGCC 61.331 65.000 0.00 0.00 43.99 4.85
2773 17932 0.614979 TGGGAGGAGTGTAGGACTGC 60.615 60.000 0.00 0.00 43.28 4.40
2774 17933 1.827969 CTTGGGAGGAGTGTAGGACTG 59.172 57.143 0.00 0.00 33.83 3.51
2775 17934 1.433592 ACTTGGGAGGAGTGTAGGACT 59.566 52.381 0.00 0.00 37.76 3.85
2776 17935 1.939980 ACTTGGGAGGAGTGTAGGAC 58.060 55.000 0.00 0.00 0.00 3.85
2777 17936 2.111972 AGAACTTGGGAGGAGTGTAGGA 59.888 50.000 0.00 0.00 0.00 2.94
2778 17937 2.234908 CAGAACTTGGGAGGAGTGTAGG 59.765 54.545 0.00 0.00 0.00 3.18
2779 17938 3.165875 TCAGAACTTGGGAGGAGTGTAG 58.834 50.000 0.00 0.00 0.00 2.74
2780 17939 3.254093 TCAGAACTTGGGAGGAGTGTA 57.746 47.619 0.00 0.00 0.00 2.90
2781 17940 2.103153 TCAGAACTTGGGAGGAGTGT 57.897 50.000 0.00 0.00 0.00 3.55
2782 17941 3.492102 TTTCAGAACTTGGGAGGAGTG 57.508 47.619 0.00 0.00 0.00 3.51
2783 17942 4.104738 TCATTTTCAGAACTTGGGAGGAGT 59.895 41.667 0.00 0.00 0.00 3.85
2784 17943 4.457257 GTCATTTTCAGAACTTGGGAGGAG 59.543 45.833 0.00 0.00 0.00 3.69
2785 17944 4.141274 TGTCATTTTCAGAACTTGGGAGGA 60.141 41.667 0.00 0.00 0.00 3.71
2786 17945 4.144297 TGTCATTTTCAGAACTTGGGAGG 58.856 43.478 0.00 0.00 0.00 4.30
2787 17946 4.823989 ACTGTCATTTTCAGAACTTGGGAG 59.176 41.667 0.00 0.00 36.81 4.30
2788 17947 4.792068 ACTGTCATTTTCAGAACTTGGGA 58.208 39.130 0.00 0.00 36.81 4.37
2789 17948 4.022849 GGACTGTCATTTTCAGAACTTGGG 60.023 45.833 10.38 0.00 36.81 4.12
2790 17949 4.580167 TGGACTGTCATTTTCAGAACTTGG 59.420 41.667 10.38 0.00 36.81 3.61
2791 17950 5.297776 ACTGGACTGTCATTTTCAGAACTTG 59.702 40.000 15.00 0.00 36.81 3.16
2792 17951 5.440610 ACTGGACTGTCATTTTCAGAACTT 58.559 37.500 15.00 0.00 36.81 2.66
2793 17952 5.041191 ACTGGACTGTCATTTTCAGAACT 57.959 39.130 15.00 0.00 36.81 3.01
2794 17953 6.073003 CCTTACTGGACTGTCATTTTCAGAAC 60.073 42.308 15.00 0.00 38.35 3.01
2795 17954 5.997746 CCTTACTGGACTGTCATTTTCAGAA 59.002 40.000 15.00 6.77 38.35 3.02
2796 17955 5.071788 ACCTTACTGGACTGTCATTTTCAGA 59.928 40.000 15.00 0.81 39.71 3.27
2797 17956 5.308825 ACCTTACTGGACTGTCATTTTCAG 58.691 41.667 10.38 9.43 39.71 3.02
2798 17957 5.304686 ACCTTACTGGACTGTCATTTTCA 57.695 39.130 10.38 0.00 39.71 2.69
2799 17958 6.228258 TGTACCTTACTGGACTGTCATTTTC 58.772 40.000 10.38 0.00 39.71 2.29
2800 17959 6.182507 TGTACCTTACTGGACTGTCATTTT 57.817 37.500 10.38 0.00 39.71 1.82
2801 17960 5.818678 TGTACCTTACTGGACTGTCATTT 57.181 39.130 10.38 0.00 39.71 2.32
2802 17961 5.512576 GGTTGTACCTTACTGGACTGTCATT 60.513 44.000 10.38 0.00 39.71 2.57
2803 17962 4.020485 GGTTGTACCTTACTGGACTGTCAT 60.020 45.833 10.38 0.00 39.71 3.06
2804 17963 3.322828 GGTTGTACCTTACTGGACTGTCA 59.677 47.826 10.38 0.00 39.71 3.58
2805 17964 3.322828 TGGTTGTACCTTACTGGACTGTC 59.677 47.826 0.00 0.00 39.58 3.51
2806 17965 3.311091 TGGTTGTACCTTACTGGACTGT 58.689 45.455 0.00 0.00 39.58 3.55
2807 17966 4.020573 TGATGGTTGTACCTTACTGGACTG 60.021 45.833 0.00 0.00 39.58 3.51
2808 17967 4.020485 GTGATGGTTGTACCTTACTGGACT 60.020 45.833 0.00 0.00 39.58 3.85
2809 17968 4.251268 GTGATGGTTGTACCTTACTGGAC 58.749 47.826 0.00 0.00 39.58 4.02
2810 17969 3.262405 GGTGATGGTTGTACCTTACTGGA 59.738 47.826 0.00 0.00 39.58 3.86
2811 17970 3.263425 AGGTGATGGTTGTACCTTACTGG 59.737 47.826 0.00 0.00 41.93 4.00
2812 17971 4.553330 AGGTGATGGTTGTACCTTACTG 57.447 45.455 0.00 0.00 41.93 2.74
2817 17976 5.836024 TTAAGAAGGTGATGGTTGTACCT 57.164 39.130 0.00 0.00 46.38 3.08
2818 17977 7.462571 AAATTAAGAAGGTGATGGTTGTACC 57.537 36.000 0.00 0.00 39.22 3.34
2821 17980 8.531146 CCAATAAATTAAGAAGGTGATGGTTGT 58.469 33.333 0.00 0.00 0.00 3.32
2822 17981 8.748412 TCCAATAAATTAAGAAGGTGATGGTTG 58.252 33.333 0.00 0.00 0.00 3.77
2823 17982 8.893563 TCCAATAAATTAAGAAGGTGATGGTT 57.106 30.769 0.00 0.00 0.00 3.67
2824 17983 7.068716 GCTCCAATAAATTAAGAAGGTGATGGT 59.931 37.037 0.00 0.00 0.00 3.55
2825 17984 7.068593 TGCTCCAATAAATTAAGAAGGTGATGG 59.931 37.037 0.00 0.00 0.00 3.51
2826 17985 7.999679 TGCTCCAATAAATTAAGAAGGTGATG 58.000 34.615 0.00 0.00 0.00 3.07
2827 17986 7.201857 GCTGCTCCAATAAATTAAGAAGGTGAT 60.202 37.037 0.00 0.00 0.00 3.06
2828 17987 6.095440 GCTGCTCCAATAAATTAAGAAGGTGA 59.905 38.462 0.00 0.00 0.00 4.02
2829 17988 6.127647 TGCTGCTCCAATAAATTAAGAAGGTG 60.128 38.462 0.00 0.00 0.00 4.00
2830 17989 5.951747 TGCTGCTCCAATAAATTAAGAAGGT 59.048 36.000 0.00 0.00 0.00 3.50
2831 17990 6.455360 TGCTGCTCCAATAAATTAAGAAGG 57.545 37.500 0.00 0.00 0.00 3.46
2832 17991 5.975939 GCTGCTGCTCCAATAAATTAAGAAG 59.024 40.000 8.53 0.00 36.03 2.85
2833 17992 5.894807 GCTGCTGCTCCAATAAATTAAGAA 58.105 37.500 8.53 0.00 36.03 2.52
2834 17993 5.505173 GCTGCTGCTCCAATAAATTAAGA 57.495 39.130 8.53 0.00 36.03 2.10
2852 18011 7.305474 TCTTAATTAAAACTTACAGCAGCTGC 58.695 34.615 31.53 31.53 42.49 5.25
2853 18012 9.677567 TTTCTTAATTAAAACTTACAGCAGCTG 57.322 29.630 21.54 21.54 37.52 4.24
2854 18013 9.678941 GTTTCTTAATTAAAACTTACAGCAGCT 57.321 29.630 0.00 0.00 33.57 4.24
2855 18014 8.912658 GGTTTCTTAATTAAAACTTACAGCAGC 58.087 33.333 10.93 0.00 36.01 5.25
2857 18016 9.959749 CAGGTTTCTTAATTAAAACTTACAGCA 57.040 29.630 10.93 0.00 31.53 4.41
2858 18017 9.406828 CCAGGTTTCTTAATTAAAACTTACAGC 57.593 33.333 10.93 0.00 31.53 4.40
2870 18029 9.733556 AAAACTGTTTTTCCAGGTTTCTTAATT 57.266 25.926 12.50 0.00 46.70 1.40
2874 18033 9.378551 GATTAAAACTGTTTTTCCAGGTTTCTT 57.621 29.630 22.07 0.00 46.70 2.52
2875 18034 8.536175 TGATTAAAACTGTTTTTCCAGGTTTCT 58.464 29.630 22.07 0.00 46.70 2.52
2876 18035 8.710835 TGATTAAAACTGTTTTTCCAGGTTTC 57.289 30.769 22.07 9.38 46.70 2.78
2878 18037 8.536175 TCTTGATTAAAACTGTTTTTCCAGGTT 58.464 29.630 22.07 0.00 44.10 3.50
2879 18038 8.073467 TCTTGATTAAAACTGTTTTTCCAGGT 57.927 30.769 22.07 0.56 36.32 4.00
2889 18048 9.778741 TCTGAGTTGTATCTTGATTAAAACTGT 57.221 29.630 8.79 0.00 29.25 3.55
2896 18055 9.230122 TGCAAATTCTGAGTTGTATCTTGATTA 57.770 29.630 0.00 0.00 33.58 1.75
2897 18056 8.114331 TGCAAATTCTGAGTTGTATCTTGATT 57.886 30.769 0.00 0.00 33.58 2.57
2898 18057 7.627939 GCTGCAAATTCTGAGTTGTATCTTGAT 60.628 37.037 0.00 0.00 33.58 2.57
2899 18058 6.348786 GCTGCAAATTCTGAGTTGTATCTTGA 60.349 38.462 0.00 0.00 33.58 3.02
2900 18059 5.798934 GCTGCAAATTCTGAGTTGTATCTTG 59.201 40.000 0.00 0.00 33.58 3.02
2901 18060 5.474532 TGCTGCAAATTCTGAGTTGTATCTT 59.525 36.000 0.00 0.00 33.58 2.40
2902 18061 5.005740 TGCTGCAAATTCTGAGTTGTATCT 58.994 37.500 0.00 0.00 33.58 1.98
2903 18062 5.106396 ACTGCTGCAAATTCTGAGTTGTATC 60.106 40.000 3.02 0.00 33.58 2.24
2904 18063 4.763793 ACTGCTGCAAATTCTGAGTTGTAT 59.236 37.500 3.02 0.00 33.58 2.29
2905 18064 4.136796 ACTGCTGCAAATTCTGAGTTGTA 58.863 39.130 3.02 1.12 33.58 2.41
2906 18065 2.954318 ACTGCTGCAAATTCTGAGTTGT 59.046 40.909 3.02 0.00 33.58 3.32
2907 18066 3.252701 AGACTGCTGCAAATTCTGAGTTG 59.747 43.478 3.02 0.26 34.14 3.16
2908 18067 3.484407 AGACTGCTGCAAATTCTGAGTT 58.516 40.909 3.02 0.00 0.00 3.01
2909 18068 3.137446 AGACTGCTGCAAATTCTGAGT 57.863 42.857 3.02 0.00 0.00 3.41
2910 18069 5.814764 AATAGACTGCTGCAAATTCTGAG 57.185 39.130 14.92 0.11 0.00 3.35
2911 18070 8.962884 TTATAATAGACTGCTGCAAATTCTGA 57.037 30.769 14.92 4.65 0.00 3.27
2937 18096 9.778741 ACATAAACTGACTTGAGTTGAGAATAA 57.221 29.630 0.00 0.00 36.28 1.40
2938 18097 9.778741 AACATAAACTGACTTGAGTTGAGAATA 57.221 29.630 0.00 0.00 36.28 1.75
2939 18098 8.682936 AACATAAACTGACTTGAGTTGAGAAT 57.317 30.769 0.00 0.00 36.28 2.40
2940 18099 9.607988 TTAACATAAACTGACTTGAGTTGAGAA 57.392 29.630 0.00 0.00 36.28 2.87
2941 18100 9.042008 GTTAACATAAACTGACTTGAGTTGAGA 57.958 33.333 0.00 0.00 36.28 3.27
2942 18101 8.826710 TGTTAACATAAACTGACTTGAGTTGAG 58.173 33.333 3.59 0.00 36.28 3.02
2943 18102 8.725405 TGTTAACATAAACTGACTTGAGTTGA 57.275 30.769 3.59 0.00 36.28 3.18
2944 18103 9.438291 CTTGTTAACATAAACTGACTTGAGTTG 57.562 33.333 9.56 0.00 36.28 3.16
2945 18104 9.174166 ACTTGTTAACATAAACTGACTTGAGTT 57.826 29.630 9.56 0.00 37.81 3.01
2946 18105 8.612619 CACTTGTTAACATAAACTGACTTGAGT 58.387 33.333 9.56 2.12 0.00 3.41
2947 18106 8.826710 TCACTTGTTAACATAAACTGACTTGAG 58.173 33.333 9.56 1.47 0.00 3.02
2948 18107 8.725405 TCACTTGTTAACATAAACTGACTTGA 57.275 30.769 9.56 0.00 0.00 3.02
2949 18108 8.070171 CCTCACTTGTTAACATAAACTGACTTG 58.930 37.037 9.56 0.00 0.00 3.16
2950 18109 7.255139 GCCTCACTTGTTAACATAAACTGACTT 60.255 37.037 9.56 0.00 0.00 3.01
2951 18110 6.204882 GCCTCACTTGTTAACATAAACTGACT 59.795 38.462 9.56 0.00 0.00 3.41
2952 18111 6.017440 TGCCTCACTTGTTAACATAAACTGAC 60.017 38.462 9.56 0.00 0.00 3.51
2953 18112 6.017440 GTGCCTCACTTGTTAACATAAACTGA 60.017 38.462 9.56 5.31 0.00 3.41
2954 18113 6.142817 GTGCCTCACTTGTTAACATAAACTG 58.857 40.000 9.56 1.23 0.00 3.16
2955 18114 5.825679 TGTGCCTCACTTGTTAACATAAACT 59.174 36.000 9.56 0.00 35.11 2.66
2956 18115 5.912955 GTGTGCCTCACTTGTTAACATAAAC 59.087 40.000 9.56 1.26 43.13 2.01
2957 18116 6.067263 GTGTGCCTCACTTGTTAACATAAA 57.933 37.500 9.56 0.00 43.13 1.40
2958 18117 5.682943 GTGTGCCTCACTTGTTAACATAA 57.317 39.130 9.56 0.00 43.13 1.90
2970 18129 2.015736 CAGGATGTAGTGTGCCTCAC 57.984 55.000 1.58 1.58 46.46 3.51
2983 18142 4.344104 AGGATGGGTAAACAAACAGGATG 58.656 43.478 0.00 0.00 46.00 3.51
2984 18143 4.675063 AGGATGGGTAAACAAACAGGAT 57.325 40.909 0.00 0.00 0.00 3.24
2985 18144 5.586155 TTAGGATGGGTAAACAAACAGGA 57.414 39.130 0.00 0.00 0.00 3.86
2986 18145 8.413229 CAATATTAGGATGGGTAAACAAACAGG 58.587 37.037 0.00 0.00 0.00 4.00
2987 18146 8.966868 ACAATATTAGGATGGGTAAACAAACAG 58.033 33.333 0.00 0.00 0.00 3.16
2988 18147 8.887264 ACAATATTAGGATGGGTAAACAAACA 57.113 30.769 0.00 0.00 0.00 2.83
2989 18148 9.581099 CAACAATATTAGGATGGGTAAACAAAC 57.419 33.333 0.00 0.00 0.00 2.93
2990 18149 9.315363 ACAACAATATTAGGATGGGTAAACAAA 57.685 29.630 0.00 0.00 0.00 2.83
2991 18150 8.887264 ACAACAATATTAGGATGGGTAAACAA 57.113 30.769 0.00 0.00 0.00 2.83
2992 18151 8.333235 AGACAACAATATTAGGATGGGTAAACA 58.667 33.333 0.00 0.00 0.00 2.83
2993 18152 8.621286 CAGACAACAATATTAGGATGGGTAAAC 58.379 37.037 0.00 0.00 0.00 2.01
2994 18153 7.777910 CCAGACAACAATATTAGGATGGGTAAA 59.222 37.037 0.00 0.00 0.00 2.01
2995 18154 7.092174 ACCAGACAACAATATTAGGATGGGTAA 60.092 37.037 0.00 0.00 0.00 2.85
2996 18155 6.388689 ACCAGACAACAATATTAGGATGGGTA 59.611 38.462 0.00 0.00 0.00 3.69
2997 18156 5.193728 ACCAGACAACAATATTAGGATGGGT 59.806 40.000 0.00 0.00 0.00 4.51
2998 18157 5.694995 ACCAGACAACAATATTAGGATGGG 58.305 41.667 0.00 0.00 0.00 4.00
2999 18158 7.645058 AAACCAGACAACAATATTAGGATGG 57.355 36.000 0.00 0.00 0.00 3.51
3001 18160 9.920946 ACATAAACCAGACAACAATATTAGGAT 57.079 29.630 0.00 0.00 0.00 3.24
3007 18166 9.515226 ACTTGTACATAAACCAGACAACAATAT 57.485 29.630 0.00 0.00 0.00 1.28
3008 18167 8.779303 CACTTGTACATAAACCAGACAACAATA 58.221 33.333 0.00 0.00 0.00 1.90
3009 18168 7.648142 CACTTGTACATAAACCAGACAACAAT 58.352 34.615 0.00 0.00 0.00 2.71
3010 18169 6.459024 GCACTTGTACATAAACCAGACAACAA 60.459 38.462 0.00 0.00 0.00 2.83
3011 18170 5.008217 GCACTTGTACATAAACCAGACAACA 59.992 40.000 0.00 0.00 0.00 3.33
3012 18171 5.238650 AGCACTTGTACATAAACCAGACAAC 59.761 40.000 0.00 0.00 0.00 3.32
3013 18172 5.238432 CAGCACTTGTACATAAACCAGACAA 59.762 40.000 0.00 0.00 0.00 3.18
3014 18173 4.754618 CAGCACTTGTACATAAACCAGACA 59.245 41.667 0.00 0.00 0.00 3.41
3015 18174 4.755123 ACAGCACTTGTACATAAACCAGAC 59.245 41.667 0.00 0.00 38.56 3.51
3016 18175 4.754618 CACAGCACTTGTACATAAACCAGA 59.245 41.667 0.00 0.00 38.16 3.86
3017 18176 4.515191 ACACAGCACTTGTACATAAACCAG 59.485 41.667 0.00 0.00 38.16 4.00
3018 18177 4.456535 ACACAGCACTTGTACATAAACCA 58.543 39.130 0.00 0.00 38.16 3.67
3019 18178 4.513692 TGACACAGCACTTGTACATAAACC 59.486 41.667 0.00 0.00 38.16 3.27
3020 18179 5.666969 TGACACAGCACTTGTACATAAAC 57.333 39.130 0.00 0.00 38.16 2.01
3021 18180 5.820423 AGTTGACACAGCACTTGTACATAAA 59.180 36.000 0.00 0.00 38.16 1.40
3022 18181 5.236263 CAGTTGACACAGCACTTGTACATAA 59.764 40.000 0.00 0.00 38.16 1.90
3023 18182 4.749598 CAGTTGACACAGCACTTGTACATA 59.250 41.667 0.00 0.00 38.16 2.29
3024 18183 3.561310 CAGTTGACACAGCACTTGTACAT 59.439 43.478 0.00 0.00 38.16 2.29
3025 18184 2.935849 CAGTTGACACAGCACTTGTACA 59.064 45.455 0.00 0.00 38.16 2.90
3026 18185 3.194861 TCAGTTGACACAGCACTTGTAC 58.805 45.455 0.00 0.00 38.16 2.90
3027 18186 3.457234 CTCAGTTGACACAGCACTTGTA 58.543 45.455 0.00 0.00 38.16 2.41
3028 18187 2.283298 CTCAGTTGACACAGCACTTGT 58.717 47.619 0.00 0.00 41.94 3.16
3029 18188 1.003116 GCTCAGTTGACACAGCACTTG 60.003 52.381 0.00 0.00 0.00 3.16
3030 18189 1.303309 GCTCAGTTGACACAGCACTT 58.697 50.000 0.00 0.00 0.00 3.16
3031 18190 0.178767 TGCTCAGTTGACACAGCACT 59.821 50.000 3.66 0.00 36.96 4.40
3032 18191 1.069432 CATGCTCAGTTGACACAGCAC 60.069 52.381 8.61 0.00 44.44 4.40
3033 18192 1.232119 CATGCTCAGTTGACACAGCA 58.768 50.000 8.80 8.80 45.65 4.41
3034 18193 0.520404 CCATGCTCAGTTGACACAGC 59.480 55.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.